AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0295980


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0295980 MtrunA17_Chr2g0318341 91.483 317 27 0 285 601 25 341 0.0 603
Msa0295980 MtrunA17_Chr2g0318341 87.834 337 8 2 1 304 1 337 0.0 603
Msa0295980 MtrunA17_Chr2g0318311 87.048 332 40 1 270 601 13 341 0.0 592
Msa0295980 MtrunA17_Chr2g0318311 84.570 337 19 2 1 304 1 337 0.0 581
Msa0295980 MtrunA17_Chr8g0360691 67.173 329 108 0 273 601 13 341 7.46e-162 466
Msa0295980 MtrunA17_Chr8g0360691 62.310 329 90 3 10 304 9 337 4.55e-138 405
Msa0295980 MtrunA17_Chr4g0029291 48.571 280 137 4 306 582 120 395 2.16e-88 279
Msa0295980 MtrunA17_Chr4g0029291 43.750 288 122 7 38 289 112 395 3.81e-71 234
Msa0295980 MtrunA17_Chr4g0029271 47.500 280 141 4 306 582 110 386 6.16e-88 278
Msa0295980 MtrunA17_Chr4g0029271 43.158 285 123 5 41 289 105 386 1.20e-72 238
Msa0295980 MtrunA17_Chr2g0287361 42.574 303 142 7 307 601 53 331 1.23e-76 246
Msa0295980 MtrunA17_Chr2g0287361 36.610 295 130 8 33 293 38 309 1.62e-54 188
Msa0295980 MtrunA17_Chr2g0292811 42.384 302 142 7 308 601 53 330 5.90e-75 242
Msa0295980 MtrunA17_Chr2g0292811 37.591 274 123 6 33 274 37 294 1.76e-53 185
Msa0295980 MtrunA17_Chr2g0292801 43.509 285 138 6 325 601 324 593 3.55e-72 243
Msa0295980 MtrunA17_Chr2g0292801 34.951 309 149 8 31 304 298 589 4.26e-51 185
Msa0295980 MtrunA17_Chr2g0292821 43.571 280 145 5 325 601 324 593 2.14e-71 241
Msa0295980 MtrunA17_Chr2g0292821 34.951 309 149 8 31 304 298 589 1.51e-50 184
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0295980 AT5G54370.1 64.883 299 100 2 306 601 41 337 3.76e-146 426
Msa0295980 AT5G54370.1 54.192 334 113 5 7 304 4 333 5.95e-123 367
Msa0295980 AT1G54890.1 60.927 302 113 3 305 601 46 347 1.35e-135 399
Msa0295980 AT1G54890.1 53.172 331 113 5 16 304 13 343 2.19e-118 355
Msa0295980 AT4G27400.1 56.289 318 132 3 289 601 26 341 2.84e-131 388
Msa0295980 AT4G27400.1 49.398 332 126 5 13 304 8 337 1.01e-106 325
Msa0295980 AT5G60520.1 52.075 265 123 3 306 567 64 327 2.97e-93 290
Msa0295980 AT5G60520.1 45.487 277 113 5 34 274 53 327 1.71e-75 244
Msa0295980 AT5G60530.1 49.817 273 132 3 306 574 164 435 3.09e-92 291
Msa0295980 AT5G60530.1 45.263 285 117 6 34 281 153 435 3.18e-78 254
Msa0295980 AT3G19430.2 40.594 303 159 6 303 601 297 582 6.63e-73 244
Msa0295980 AT3G19430.2 36.039 308 143 8 34 304 288 578 2.42e-53 192
Msa0295980 AT3G19430.1 40.594 303 159 6 303 601 274 559 6.75e-73 244
Msa0295980 AT3G19430.1 36.039 308 143 8 34 304 265 555 2.61e-53 191

Find 158 sgRNAs with CRISPR-Local

Find 334 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGCCACACCATCATCAATT+TGG 0.212135 2_3:-48821633 Msa0295980:CDS
AGATAGCAAACTTTGTCTTT+TGG 0.252280 2_3:+48822179 None:intergenic
ACAGATATTTCAGCAACTTC+TGG 0.256973 2_3:+48821466 None:intergenic
ACAGATATTTCAGCAACTTC+TGG 0.256973 2_3:+48824760 None:intergenic
CATCAGGAATCTGATAATTA+TGG 0.264771 2_3:+48821407 None:intergenic
CATCAGGAATCTGATAATTA+TGG 0.264771 2_3:+48824701 None:intergenic
ATTGCCACGCCTGGCTTTGC+CGG 0.284921 2_3:+48821283 Msa0295970:CDS
GATCCGCGACCATTACAATT+TGG 0.285841 2_3:+48821862 None:intergenic
TCCAAGAACTCCTTCAACTT+TGG 0.319801 2_3:+48821333 None:intergenic
GATGTGCAGTTCAAATTCTA+TGG 0.321248 2_3:-48821364 Msa0295980:CDS
GATGTGCAGTTCAAATTCTA+TGG 0.321248 2_3:-48824658 Msa0295980:intron
CACGTGGAGAGGTGACCTTC+AGG 0.323310 2_3:+48824850 None:intergenic
CACGTAGAGAGGTGACCTTC+AGG 0.324319 2_3:+48821556 None:intergenic
ATAGCCACACCTGGCTTTGC+CGG 0.333888 2_3:+48824577 None:intergenic
TCCAAAGTTGAAGGAGTTCT+TGG 0.337116 2_3:-48821334 Msa0295980:CDS
TCCAAAGTTGAAGGAGTTCT+TGG 0.337116 2_3:-48824628 Msa0295980:intron
TAAAACGAGCATTGATTTGA+AGG 0.368629 2_3:+48821743 None:intergenic
TAAAACGAGCATTGATTTGA+AGG 0.375773 2_3:+48825037 None:intergenic
GGGTTAGCTGGTGATCTTGA+AGG 0.383234 2_3:+48822200 None:intergenic
CAGATATTTCAGCAACTTCT+GGG 0.400574 2_3:+48821467 None:intergenic
CAGATATTTCAGCAACTTCT+GGG 0.400574 2_3:+48824761 None:intergenic
AGCCACACCATCATCAATTT+GGG 0.401698 2_3:-48821632 Msa0295980:CDS
GAAGGCTTGGAGATTGAATA+TGG 0.405534 2_3:-48821163 Msa0295980:CDS
GATCTGCATGCTTGGACCCT+CGG 0.418311 2_3:-48821843 Msa0295980:CDS
GGCGTGGCAATGCCGGTCAT+TGG 0.420807 2_3:-48821271 Msa0295980:CDS
TATACTTGGATTCAAGCATT+GGG 0.425530 2_3:-48821688 Msa0295980:CDS
TATACTTGGATTCAAGCATT+GGG 0.425530 2_3:-48824982 Msa0295980:CDS
TGGCCGCGGATCTGCGTGCT+TGG 0.430493 2_3:-48825145 Msa0295980:CDS
CCTCGTTTCGTTGGTGCGGA+TGG 0.440785 2_3:-48825120 Msa0295980:CDS
TGAGAAAACAACGGCTCTTA+CGG 0.441610 2_3:+48825692 None:intergenic
GGGTTAGCTGGTGATCTTGA+AGG 0.441826 2_3:+48825643 None:intergenic
AACTATACCATTACCACTGC+TGG 0.442336 2_3:+48821117 Msa0295970:CDS
GAAGGCATGGATATTGAGTA+TGG 0.445718 2_3:-48824457 Msa0295980:CDS
ACGAGCATTGATTTGAAGGT+TGG 0.446132 2_3:+48825041 None:intergenic
CCTCGGTTCGTTGGTGCGGA+TGG 0.452228 2_3:-48821826 Msa0295980:CDS
AGATTCAGTGCAGGAAGGCT+TGG 0.454274 2_3:-48821176 Msa0295980:CDS
AAAGCCAGGCGTGGCAATGC+CGG 0.457703 2_3:-48821278 Msa0295980:CDS
TTGGTCTCCCTTGCGGCCTA+AGG 0.460474 2_3:+48821716 None:intergenic
TTGGTCTCCCTTGCGGCCTA+AGG 0.460474 2_3:+48825010 None:intergenic
GGAGACCAAGGGATTATACT+TGG 0.461637 2_3:-48821702 Msa0295980:CDS
GGAGACCAAGGGATTATACT+TGG 0.461637 2_3:-48824996 Msa0295980:CDS
ATGACCGGCATTGCCACGCC+TGG 0.467891 2_3:+48821274 Msa0295970:CDS
ATGGATTCTACTGTCCTCCT+TGG 0.475359 2_3:+48821426 None:intergenic
ATGGATTCTACTGTCCTCCT+TGG 0.475359 2_3:+48824720 None:intergenic
ATCTTGAAGGGCACTGAGTA+GGG 0.476219 2_3:+48822213 None:intergenic
GTGGCAATGCCGGTCATTGG+AGG 0.478744 2_3:-48821268 Msa0295980:CDS
TTATACTTGGATTCAAGCAT+TGG 0.481860 2_3:-48821689 Msa0295980:CDS
TTATACTTGGATTCAAGCAT+TGG 0.481860 2_3:-48824983 Msa0295980:CDS
TTGTCTTCCCCTCCAACTAC+TGG 0.482550 2_3:+48824553 None:intergenic
TGAGCAAAACAATCATCATC+AGG 0.483129 2_3:+48821391 None:intergenic
TGAGCAAAACAATCATCATC+AGG 0.483129 2_3:+48824685 None:intergenic
TTTCAAAATCCGGCAAAGCC+AGG 0.488564 2_3:-48821292 Msa0295980:CDS
GGTTAGCTGGTGATCTTGAA+GGG 0.489453 2_3:+48822201 None:intergenic
TGGTCGCGGATCTGCATGCT+TGG 0.491252 2_3:-48821851 Msa0295980:CDS
GGTCGTAAAGCAAATTGTAA+TGG 0.494042 2_3:-48825165 Msa0295980:CDS
CTACTGTCCTCCTTGGTGAC+AGG 0.494181 2_3:+48821433 None:intergenic
CTACTGTCCTCCTTGGTGAC+AGG 0.494181 2_3:+48824727 None:intergenic
TTTCAAAATCCGGCAAAGCC+AGG 0.497033 2_3:-48824586 Msa0295980:CDS
CCTCGGATTGCCACGTGGAG+AGG 0.499460 2_3:+48824839 None:intergenic
CGTCGGATTGCCACGTAGAG+AGG 0.506458 2_3:+48821545 None:intergenic
GGTGGTGCCAGCAGTGGTAA+TGG 0.506919 2_3:-48821124 Msa0295980:CDS
GGAGATTGAATATGGTATGA+TGG 0.508182 2_3:-48821155 Msa0295980:CDS
TGCTTGGACCCTCGGTTCGT+TGG 0.509275 2_3:-48821835 Msa0295980:CDS
GATCTTGAAGGACATTGAGC+AGG 0.512583 2_3:+48825655 None:intergenic
AATGCTCATTCCTCCTTCCA+TGG 0.514259 2_3:+48825082 None:intergenic
GGTGTGGCTATGCCAGTAGT+TGG 0.516923 2_3:-48824565 Msa0295980:CDS
GGATATTGAGTATGGTATGA+TGG 0.518205 2_3:-48824449 Msa0295980:CDS
TGGCAATGCCGGTCATTGGA+GGG 0.520893 2_3:-48821267 Msa0295980:CDS
AGATTCAGTGCAGGAAGGCA+TGG 0.525207 2_3:-48824470 Msa0295980:CDS
TGCTTGGACCCTCGTTTCGT+TGG 0.528337 2_3:-48825129 Msa0295980:CDS
GATCTTGAAGGGCACTGAGT+AGG 0.531784 2_3:+48822212 None:intergenic
ACGTGGAGAGGTGACCTTCA+GGG 0.531866 2_3:+48824851 None:intergenic
GGACCCTCGGTTCGTTGGTG+CGG 0.532291 2_3:-48821830 Msa0295980:CDS
TTGTCTTCCCCTCCAATGAC+CGG 0.533192 2_3:+48821259 Msa0295970:CDS
ATCTGAAGATGCAAGGGATG+TGG 0.533450 2_3:+48824522 None:intergenic
CAAGACAATCTGAAGAAACA+AGG 0.537212 2_3:+48821221 Msa0295970:CDS
ACGTAGAGAGGTGACCTTCA+GGG 0.537243 2_3:+48821557 None:intergenic
TTTATCGGCCTTAGGCCGCA+AGG 0.538998 2_3:-48821724 Msa0295980:CDS
TTTATCGGCCTTAGGCCGCA+AGG 0.538998 2_3:-48825018 Msa0295980:CDS
GGTTTATCGTCCAAAGTTGA+AGG 0.540641 2_3:-48821343 Msa0295980:CDS
TGAATCCAAGTATAATCCCT+TGG 0.542313 2_3:+48821697 None:intergenic
TGAATCCAAGTATAATCCCT+TGG 0.542313 2_3:+48824991 None:intergenic
CGTCATAAGAGAGCTTCAAA+TGG 0.545184 2_3:+48821596 None:intergenic
AGTGCTCATTCCTCCTTCCA+TGG 0.545876 2_3:+48821788 None:intergenic
ATCTGAAGAAACAAGGGATG+TGG 0.547311 2_3:+48821228 Msa0295970:CDS
TGCACGGGTGGTGCCAGCAG+TGG 0.547740 2_3:-48821130 Msa0295980:CDS
TTCTGCTAAAGATTCAGTGC+AGG 0.549391 2_3:-48821185 Msa0295980:CDS
TTCTGCTAAAGATTCAGTGC+AGG 0.549391 2_3:-48824479 Msa0295980:CDS
GGCAATGCCGGTCATTGGAG+GGG 0.549475 2_3:-48821266 Msa0295980:CDS
GGTCGTAAACCAAATTGTAA+TGG 0.554034 2_3:-48821871 Msa0295980:CDS
TCGTCATCCCAAATTGATGA+TGG 0.560527 2_3:+48821625 None:intergenic
GTGGCTATGCCAGTAGTTGG+AGG 0.563541 2_3:-48824562 Msa0295980:CDS
CAAGACAATCTGAAGATGCA+AGG 0.565565 2_3:+48824515 None:intergenic
GGTATGATGGATTGCACTGG+TGG 0.568752 2_3:-48824436 Msa0295980:CDS
AAAAGTTGTGTGAATCAAAG+AGG 0.574407 2_3:+48821662 None:intergenic
CATTTGAAGCTCTCTTATGA+CGG 0.574479 2_3:-48821595 Msa0295980:CDS
CATTTGAAGCTCTCTTATGA+CGG 0.574479 2_3:-48824889 Msa0295980:intron
TTAGGCCGCAAGGGAGACCA+AGG 0.575605 2_3:-48821714 Msa0295980:CDS
TTAGGCCGCAAGGGAGACCA+AGG 0.575605 2_3:-48825008 Msa0295980:CDS
GAAGCTCTCTTATGACGGAA+AGG 0.577165 2_3:-48821590 Msa0295980:CDS
GAAGCTCTCTTATGACGGAA+AGG 0.577165 2_3:-48824884 Msa0295980:intron
GGCTATGCCAGTAGTTGGAG+GGG 0.579023 2_3:-48824560 Msa0295980:CDS
TGGCTATGCCAGTAGTTGGA+GGG 0.587831 2_3:-48824561 Msa0295980:CDS
GAGGAATGAGCATTTCAGCT+TGG 0.589342 2_3:-48825073 Msa0295980:CDS
ATCGAATGAGAACGGTGTCA+TGG 0.591031 2_3:-48821497 Msa0295980:CDS
ATCGAATGAGAACGGTGTCA+TGG 0.591031 2_3:-48824791 Msa0295980:CDS
AAACCAAATTGTAATGGTCG+CGG 0.592477 2_3:-48821865 Msa0295980:CDS
CAAGATCACCAGCTAACCCA+AGG 0.593988 2_3:-48825639 Msa0295980:CDS
GAGGAATGAGCACTTCAGCT+TGG 0.594491 2_3:-48821779 Msa0295980:CDS
TAATCCCTTGGTCTCCCTTG+CGG 0.596610 2_3:+48821709 None:intergenic
TAATCCCTTGGTCTCCCTTG+CGG 0.596610 2_3:+48825003 None:intergenic
AAAACAACGGCTCTTACGGT+TGG 0.597533 2_3:+48825696 None:intergenic
ACTACTGGCATAGCCACACC+TGG 0.600637 2_3:+48824568 None:intergenic
GGTGGTGCTAGCAGTGGCAA+TGG 0.602514 2_3:-48824418 Msa0295980:CDS
GAAGGACATTGAGCAGGGCA+AGG 0.603155 2_3:+48825661 None:intergenic
AAGACAATCTGAAGATGCAA+GGG 0.603290 2_3:+48824516 None:intergenic
AAAGCAAATTGTAATGGCCG+CGG 0.604200 2_3:-48825159 Msa0295980:CDS
TTATCGGCCTTAGGCCGCAA+GGG 0.605783 2_3:-48821723 Msa0295980:CDS
TTATCGGCCTTAGGCCGCAA+GGG 0.605783 2_3:-48825017 Msa0295980:CDS
CCTCTCCACGTGGCAATCCG+AGG 0.606272 2_3:-48824839 Msa0295980:CDS
GGTCCAAGCACGCAGATCCG+CGG 0.606584 2_3:+48825142 None:intergenic
GCTAAAGATTCAGTGCAGGA+AGG 0.607245 2_3:-48821181 Msa0295980:CDS
GGACCCTCGTTTCGTTGGTG+CGG 0.615729 2_3:-48825124 Msa0295980:CDS
CCATCCGCACCAACGAAACG+AGG 0.619171 2_3:+48825120 None:intergenic
ATCTTGAAGGACATTGAGCA+GGG 0.621400 2_3:+48825656 None:intergenic
CAATGTGGTGCCTGTCACCA+AGG 0.622527 2_3:-48821443 Msa0295980:CDS
CAATGTGGTGCCTGTCACCA+AGG 0.622527 2_3:-48824737 Msa0295980:CDS
GGTATGATGGATTGCACGGG+TGG 0.622663 2_3:-48821142 Msa0295980:CDS
ATACTTGGATTCAAGCATTG+GGG 0.623520 2_3:-48821687 Msa0295980:CDS
ATACTTGGATTCAAGCATTG+GGG 0.623520 2_3:-48824981 Msa0295980:CDS
TGCACTGGTGGTGCTAGCAG+TGG 0.625033 2_3:-48824424 Msa0295980:CDS
CATCCGCACCAACGAACCGA+GGG 0.629982 2_3:+48821827 None:intergenic
AAGGATCTCGTAATCCCTGA+AGG 0.634498 2_3:-48821571 Msa0295980:CDS
AAGGATCTCGTAATCCCTGA+AGG 0.634498 2_3:-48824865 Msa0295980:CDS
CCATCCGCACCAACGAACCG+AGG 0.635702 2_3:+48821826 None:intergenic
ATCCCAAATTGATGATGGTG+TGG 0.638854 2_3:+48821630 None:intergenic
AAGACAATCTGAAGAAACAA+GGG 0.640149 2_3:+48821222 Msa0295970:CDS
GCTAAAGATTCAGTGCAGGA+AGG 0.646657 2_3:-48824475 Msa0295980:CDS
AAATCCGGCAAAGCCAGGCG+TGG 0.649193 2_3:-48821287 Msa0295980:CDS
GAGAGAACATCGAATGAGAA+CGG 0.650582 2_3:-48821505 Msa0295980:CDS
GAGAGAACATCGAATGAGAA+CGG 0.650582 2_3:-48824799 Msa0295980:CDS
TATGGTATGATGGATTGCAC+TGG 0.652916 2_3:-48824439 Msa0295980:CDS
AAATCCGGCAAAGCCAGGTG+TGG 0.653931 2_3:-48824581 Msa0295980:CDS
TACTTGGATTCAAGCATTGG+GGG 0.654990 2_3:-48821686 Msa0295980:CDS
TACTTGGATTCAAGCATTGG+GGG 0.654990 2_3:-48824980 Msa0295980:intron
ATATGGTATGATGGATTGCA+CGG 0.657387 2_3:-48821146 Msa0295980:CDS
CTGAAGGTCACCTCTCTACG+TGG 0.671125 2_3:-48821555 Msa0295980:CDS
GTAGTTTCTTGAGAAAACAA+CGG 0.671848 2_3:+48825683 None:intergenic
CTGAAGGTCACCTCTCCACG+TGG 0.671875 2_3:-48824849 Msa0295980:CDS
AAGATCACCAGCTAACCCAA+GGG 0.673008 2_3:-48825638 Msa0295980:CDS
CATCCGCACCAACGAAACGA+GGG 0.683977 2_3:+48825121 None:intergenic
TATGGTATGATGGATTGCAC+GGG 0.687913 2_3:-48821145 Msa0295980:CDS
TAGGCCGCAAGGGAGACCAA+GGG 0.706685 2_3:-48821713 Msa0295980:CDS
TAGGCCGCAAGGGAGACCAA+GGG 0.706685 2_3:-48825007 Msa0295980:CDS
TGCTGAAATATCTGTCAATG+TGG 0.712131 2_3:-48821458 Msa0295980:CDS
TGCTGAAATATCTGTCAATG+TGG 0.712131 2_3:-48824752 Msa0295980:CDS
TGTGGTGCCTGTCACCAAGG+AGG 0.732407 2_3:-48821440 Msa0295980:CDS
TGTGGTGCCTGTCACCAAGG+AGG 0.732407 2_3:-48824734 Msa0295980:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTCTTGTGATAAATTTAATA+AGG - chr2_3:48821403-48821422 Msa0295980:CDS 15.0%
!!! TTTTATACATAGTACATAAT+AGG - chr2_3:48823399-48823418 Msa0295980:intron 15.0%
!!! TTTTTCGTATTTTATGATAA+TGG - chr2_3:48824840-48824859 Msa0295980:CDS 15.0%
!! GTGATAAATTTAATAAGGTT+TGG - chr2_3:48821408-48821427 Msa0295980:CDS 20.0%
!! AACAAGTGATCATTATATAT+TGG - chr2_3:48821662-48821681 Msa0295980:CDS 20.0%
!! AACAAGTGTTCATTATATAT+TGG - chr2_3:48821707-48821726 Msa0295980:CDS 20.0%
!! ATTATATATTGGATGTGAAT+AGG - chr2_3:48821673-48821692 Msa0295980:CDS 20.0%
!! TAATACAATTCTTACTCAAA+AGG + chr2_3:48822641-48822660 None:intergenic 20.0%
!! AAATTGGATGTTTATTCATT+CGG + chr2_3:48823060-48823079 None:intergenic 20.0%
!! TGCATGTAAAAATAAGATAA+AGG - chr2_3:48823323-48823342 Msa0295980:intron 20.0%
!! GATTATTTATGTTCAATACT+TGG - chr2_3:48824790-48824809 Msa0295980:CDS 20.0%
!! AACAAGTGTTAATTATATAG+TGG - chr2_3:48824999-48825018 Msa0295980:CDS 20.0%
!! GAAATAATCCTATTTGAGAT+CGG + chr2_3:48821564-48821583 None:intergenic 25.0%
!! TAGTTTGCAGAAGATAAATT+TGG - chr2_3:48822511-48822530 Msa0295980:intron 25.0%
!! ACGTAATTATAAGAAAGCAT+TGG + chr2_3:48822543-48822562 None:intergenic 25.0%
! AACTCAGAAAAAAATGTTTG+TGG - chr2_3:48822574-48822593 Msa0295980:intron 25.0%
! ACTCAGAAAAAAATGTTTGT+GGG - chr2_3:48822575-48822594 Msa0295980:intron 25.0%
!! ATGGTTACAAAACAACATTT+TGG + chr2_3:48822614-48822633 None:intergenic 25.0%
! TTCTTACTCAAAAGGAAATA+TGG + chr2_3:48822633-48822652 None:intergenic 25.0%
! AGTTAATACGCTTATTCAAA+AGG + chr2_3:48822697-48822716 None:intergenic 25.0%
! TTTGAATAAGCGTATTAACT+TGG - chr2_3:48822697-48822716 Msa0295980:intron 25.0%
! CAATCACAATAGAAAAACAA+TGG + chr2_3:48822728-48822747 None:intergenic 25.0%
! TAACTCAAAGAAACATGTTA+TGG - chr2_3:48822755-48822774 Msa0295980:intron 25.0%
! AACTCAAAGAAACATGTTAT+GGG - chr2_3:48822756-48822775 Msa0295980:intron 25.0%
! TTCATTTGCATATAATCACT+AGG + chr2_3:48822824-48822843 None:intergenic 25.0%
! CAACAATAGATTTCAATACA+AGG + chr2_3:48822882-48822901 None:intergenic 25.0%
!!! TGTTGCATTCTAAAGTATTA+TGG - chr2_3:48823090-48823109 Msa0295980:intron 25.0%
! ATAGATAAAATAGCGAGAAT+AGG - chr2_3:48823352-48823371 Msa0295980:intron 25.0%
! TCAATTAACTCTAAATTGGA+AGG + chr2_3:48823848-48823867 None:intergenic 25.0%
! ATTAGAAGGGAAAAATACTA+AGG - chr2_3:48823947-48823966 Msa0295980:intron 25.0%
!! AAAATTCAAAACGCAGATTT+TGG - chr2_3:48824041-48824060 Msa0295980:intron 25.0%
! GGTATATGATAAGTTATGTA+GGG + chr2_3:48824173-48824192 None:intergenic 25.0%
! GTGCAGTTATATAAAAGATT+GGG + chr2_3:48824194-48824213 None:intergenic 25.0%
! TGTGCAGTTATATAAAAGAT+TGG + chr2_3:48824195-48824214 None:intergenic 25.0%
!! TTGAGTTTTCTATAAGCAAA+AGG - chr2_3:48824462-48824481 Msa0295980:CDS 25.0%
! AAGCAAAAGGATAGTATATA+AGG - chr2_3:48824475-48824494 Msa0295980:CDS 25.0%
GTAGTTTCTTGAGAAAACAA+CGG + chr2_3:48821224-48821243 Msa0295970:CDS 30.0%
!! GATAACAAACTTTTTCCCTT+GGG + chr2_3:48821284-48821303 Msa0295970:CDS 30.0%
!! AGATAACAAACTTTTTCCCT+TGG + chr2_3:48821285-48821304 Msa0295970:CDS 30.0%
! TTGTTTTCTATTTCCATGGA+AGG - chr2_3:48821809-48821828 Msa0295980:CDS 30.0%
!! TAAAACGAGCATTGATTTGA+AGG + chr2_3:48821870-48821889 None:intergenic 30.0%
! CAAATCAATGCTCGTTTTAT+CGG - chr2_3:48821871-48821890 Msa0295980:CDS 30.0%
TTATACTTGGATTCAAGCAT+TGG - chr2_3:48821921-48821940 Msa0295980:intron 30.0%
TATACTTGGATTCAAGCATT+GGG - chr2_3:48821922-48821941 Msa0295980:intron 30.0%
AAAAGTTGTGTGAATCAAAG+AGG + chr2_3:48821951-48821970 None:intergenic 30.0%
CATCAGGAATCTGATAATTA+TGG + chr2_3:48822206-48822225 None:intergenic 30.0%
!! TGATGATTGTTTTGCTCATT+TGG - chr2_3:48822224-48822243 Msa0295980:CDS 30.0%
CGCTTATTCAAAAGGAAATA+TGG + chr2_3:48822689-48822708 None:intergenic 30.0%
ACAATCAGATATCCATAGTT+CGG - chr2_3:48823757-48823776 Msa0295980:intron 30.0%
TTAACTCTAAATTGGAAGGT+AGG + chr2_3:48823844-48823863 None:intergenic 30.0%
CCACTCAATTAACTCTAAAT+TGG + chr2_3:48823852-48823871 None:intergenic 30.0%
! CCAATTTAGAGTTAATTGAG+TGG - chr2_3:48823849-48823868 Msa0295980:intron 30.0%
ACAAATCACTCAAGATTAGA+AGG - chr2_3:48823933-48823952 Msa0295980:intron 30.0%
CAAATCACTCAAGATTAGAA+GGG - chr2_3:48823934-48823953 Msa0295980:intron 30.0%
!!! TCACTAGTAAGTTTTAGAAG+AGG + chr2_3:48823995-48824014 None:intergenic 30.0%
!! GTTTTGAATTTTGTGTCACT+TGG + chr2_3:48824033-48824052 None:intergenic 30.0%
GGGTATATGATAAGTTATGT+AGG + chr2_3:48824174-48824193 None:intergenic 30.0%
! GATAATGAAAGTTGACTTAG+TGG + chr2_3:48824335-48824354 None:intergenic 30.0%
TGAATTGCTGGAATTATTTG+TGG + chr2_3:48824397-48824416 None:intergenic 30.0%
CTTATAGAAAACTCAACAAG+TGG + chr2_3:48824458-48824477 None:intergenic 30.0%
AAAGGATAGTATATAAGGTG+AGG - chr2_3:48824480-48824499 Msa0295980:CDS 30.0%
CAAACAAGAGAAAATCATCA+TGG - chr2_3:48824529-48824548 Msa0295980:CDS 30.0%
TCAGTTTCTTGAGAAAACAA+CGG + chr2_3:48824667-48824686 None:intergenic 30.0%
! GATAGCAAACTTTGTCTTTT+GGG + chr2_3:48824727-48824746 None:intergenic 30.0%
! AGATAGCAAACTTTGTCTTT+TGG + chr2_3:48824728-48824747 None:intergenic 30.0%
!! TAAAACGAGCATTGATTTGA+AGG + chr2_3:48821870-48821889 None:intergenic 30.0%
! CAAATCAATGCTCGTTTTAT+CGG - chr2_3:48821871-48821890 Msa0295980:CDS 30.0%
TTATACTTGGATTCAAGCAT+TGG - chr2_3:48821921-48821940 Msa0295980:intron 30.0%
TATACTTGGATTCAAGCATT+GGG - chr2_3:48821922-48821941 Msa0295980:intron 30.0%
AAAAGTTGTGTGAATCAAAG+AGG + chr2_3:48821951-48821970 None:intergenic 30.0%
CATCAGGAATCTGATAATTA+TGG + chr2_3:48822206-48822225 None:intergenic 30.0%
!! TGATGATTGTTTTGCTCATT+TGG - chr2_3:48822224-48822243 Msa0295980:CDS 30.0%
AAGACAATCTGAAGAAACAA+GGG + chr2_3:48825685-48825704 None:intergenic 30.0%
AAAACTAACATGCTCTCACT+AGG + chr2_3:48821434-48821453 None:intergenic 35.0%
!!! GCATGTTAGTTTTGCAAATG+TGG - chr2_3:48821441-48821460 Msa0295980:CDS 35.0%
ATGTTCTACCGATCTCAAAT+AGG - chr2_3:48821553-48821572 Msa0295980:CDS 35.0%
GGTCGTAAAGCAAATTGTAA+TGG - chr2_3:48821739-48821758 Msa0295980:CDS 35.0%
! GGCATTGTTTTCTATTTCCA+TGG - chr2_3:48821805-48821824 Msa0295980:CDS 35.0%
! TTTTCTATTTCCATGGAAGG+AGG - chr2_3:48821812-48821831 Msa0295980:CDS 35.0%
TGAATCCAAGTATAATCCCT+TGG + chr2_3:48821916-48821935 None:intergenic 35.0%
! ATACTTGGATTCAAGCATTG+GGG - chr2_3:48821923-48821942 Msa0295980:intron 35.0%
TCATCATCCCAAATTGATGA+TGG + chr2_3:48821988-48822007 None:intergenic 35.0%
! CATTTGAAGCTCTCTTATGA+CGG - chr2_3:48822015-48822034 Msa0295980:intron 35.0%
!!! GACTCTAAGTTGATTTTCCT+CGG + chr2_3:48822085-48822104 None:intergenic 35.0%
CAGATATTTCAGCAACTTCT+GGG + chr2_3:48822146-48822165 None:intergenic 35.0%
ACAGATATTTCAGCAACTTC+TGG + chr2_3:48822147-48822166 None:intergenic 35.0%
TGCTGAAATATCTGTCAATG+TGG - chr2_3:48822152-48822171 Msa0295980:CDS 35.0%
TGAGCAAAACAATCATCATC+AGG + chr2_3:48822222-48822241 None:intergenic 35.0%
GATGTGCAGTTCAAATTCTA+TGG - chr2_3:48822246-48822265 Msa0295980:intron 35.0%
! TCAGCCAGATTTTCAAAATC+CGG - chr2_3:48822308-48822327 Msa0295980:intron 35.0%
!! TTTGCCGGATTTTGAAAATC+TGG + chr2_3:48822315-48822334 None:intergenic 35.0%
AAGACAATCTGAAGATGCAA+GGG + chr2_3:48822391-48822410 None:intergenic 35.0%
GGATATTGAGTATGGTATGA+TGG - chr2_3:48822455-48822474 Msa0295980:intron 35.0%
AACATGTTATGGGATGTACT+CGG - chr2_3:48822766-48822785 Msa0295980:intron 35.0%
TATTGATACAAGCACAAGCA+TGG - chr2_3:48822906-48822925 Msa0295980:intron 35.0%
ATTGATACAAGCACAAGCAT+GGG - chr2_3:48822907-48822926 Msa0295980:intron 35.0%
TTATGGAAAGTTGCACACTA+TGG + chr2_3:48823586-48823605 None:intergenic 35.0%
TATAACGTCACTAACCACAA+GGG + chr2_3:48823631-48823650 None:intergenic 35.0%
TTATAACGTCACTAACCACA+AGG + chr2_3:48823632-48823651 None:intergenic 35.0%
TGGTTAGTGACGTTATAAAC+AGG - chr2_3:48823634-48823653 Msa0295980:intron 35.0%
AAGTCAAAGCTTAGTAGAAC+TGG + chr2_3:48823685-48823704 None:intergenic 35.0%
AGCTATAGATCAATGTCAAG+TGG + chr2_3:48823896-48823915 None:intergenic 35.0%
!!! GTAAGTTTTAGAAGAGGCTA+AGG + chr2_3:48823989-48824008 None:intergenic 35.0%
TGACTTTCAACCATGAAATG+TGG + chr2_3:48824276-48824295 None:intergenic 35.0%
! GTTGACTTAGTGGTTTAGAA+TGG + chr2_3:48824325-48824344 None:intergenic 35.0%
!! TTATGATAATGGTCGCAGTA+AGG - chr2_3:48824851-48824870 Msa0295980:CDS 35.0%
!! TATGATAATGGTCGCAGTAA+GGG - chr2_3:48824852-48824871 Msa0295980:CDS 35.0%
CTTTGTGATCCTTGATATTG+CGG - chr2_3:48824884-48824903 Msa0295980:intron 35.0%
AAAACAATGTGATCGCAATC+GGG + chr2_3:48824940-48824959 None:intergenic 35.0%
CAAAACAATGTGATCGCAAT+CGG + chr2_3:48824941-48824960 None:intergenic 35.0%
!! TATATAGTGGATATGAGAGC+AGG - chr2_3:48825012-48825031 Msa0295980:CDS 35.0%
GGTCGTAAACCAAATTGTAA+TGG - chr2_3:48825033-48825052 Msa0295980:CDS 35.0%
AAACCAAATTGTAATGGTCG+CGG - chr2_3:48825039-48825058 Msa0295980:CDS 35.0%
! TTGTTTTCTACTTCCATGGA+AGG - chr2_3:48825103-48825122 Msa0295980:CDS 35.0%
TGAATCCAAGTATAATCCCT+TGG + chr2_3:48821916-48821935 None:intergenic 35.0%
! ATACTTGGATTCAAGCATTG+GGG - chr2_3:48821923-48821942 Msa0295980:intron 35.0%
! CATTTGAAGCTCTCTTATGA+CGG - chr2_3:48822015-48822034 Msa0295980:intron 35.0%
!!! GACTCTAAGTTGATTTTCGT+CGG + chr2_3:48825379-48825398 None:intergenic 35.0%
CAGATATTTCAGCAACTTCT+GGG + chr2_3:48822146-48822165 None:intergenic 35.0%
ACAGATATTTCAGCAACTTC+TGG + chr2_3:48822147-48822166 None:intergenic 35.0%
TGCTGAAATATCTGTCAATG+TGG - chr2_3:48822152-48822171 Msa0295980:CDS 35.0%
TGAGCAAAACAATCATCATC+AGG + chr2_3:48822222-48822241 None:intergenic 35.0%
GATGTGCAGTTCAAATTCTA+TGG - chr2_3:48822246-48822265 Msa0295980:intron 35.0%
! TCAGCCAGATTTTCAAAATC+CGG - chr2_3:48822308-48822327 Msa0295980:intron 35.0%
!! TTTGCCGGATTTTGAAAATC+TGG + chr2_3:48822315-48822334 None:intergenic 35.0%
CAAGACAATCTGAAGAAACA+AGG + chr2_3:48825686-48825705 None:intergenic 35.0%
GGAGATTGAATATGGTATGA+TGG - chr2_3:48825749-48825768 Msa0295980:CDS 35.0%
!! ATATGGTATGATGGATTGCA+CGG - chr2_3:48825758-48825777 Msa0295980:CDS 35.0%
TGAGAAAACAACGGCTCTTA+CGG + chr2_3:48821215-48821234 Msa0295970:CDS 40.0%
ATCTTGAAGGACATTGAGCA+GGG + chr2_3:48821251-48821270 Msa0295970:CDS 40.0%
! TTGCACTGAGTTTTGCACAT+AGG + chr2_3:48821321-48821340 None:intergenic 40.0%
AAATCAAACGAGAGACCTCT+CGG + chr2_3:48821492-48821511 None:intergenic 40.0%
AAAGCAAATTGTAATGGCCG+CGG - chr2_3:48821745-48821764 Msa0295980:CDS 40.0%
!! ACGAGCATTGATTTGAAGGT+TGG + chr2_3:48821866-48821885 None:intergenic 40.0%
!! TACTTGGATTCAAGCATTGG+GGG - chr2_3:48821924-48821943 Msa0295980:intron 40.0%
AAGCCACACCATCATCAATT+TGG - chr2_3:48821977-48821996 Msa0295980:intron 40.0%
AGCCACACCATCATCAATTT+GGG - chr2_3:48821978-48821997 Msa0295980:intron 40.0%
!! ATCCCAAATTGATGATGGTG+TGG + chr2_3:48821983-48822002 None:intergenic 40.0%
CGTCATAAGAGAGCTTCAAA+TGG + chr2_3:48822017-48822036 None:intergenic 40.0%
GAGAGAACATCGAATGAGAA+CGG - chr2_3:48822105-48822124 Msa0295980:intron 40.0%
GGTTTATCGTCCAAAGTTGA+AGG - chr2_3:48822267-48822286 Msa0295980:intron 40.0%
TCCAAAGTTGAAGGAGTTCT+TGG - chr2_3:48822276-48822295 Msa0295980:intron 40.0%
TCCAAGAACTCCTTCAACTT+TGG + chr2_3:48822280-48822299 None:intergenic 40.0%
CAAGACAATCTGAAGATGCA+AGG + chr2_3:48822392-48822411 None:intergenic 40.0%
TTCTGCTAAAGATTCAGTGC+AGG - chr2_3:48822425-48822444 Msa0295980:intron 40.0%
! GAAGGCATGGATATTGAGTA+TGG - chr2_3:48822447-48822466 Msa0295980:intron 40.0%
!! TATGGTATGATGGATTGCAC+TGG - chr2_3:48822465-48822484 Msa0295980:intron 40.0%
! TGTTTGTGGGTTGTACTAAG+TGG - chr2_3:48822588-48822607 Msa0295980:intron 40.0%
AGAGCAAGGTTGTACTCATT+CGG + chr2_3:48822980-48822999 None:intergenic 40.0%
GCAACAACTCACTGAGAAAT+TGG + chr2_3:48823076-48823095 None:intergenic 40.0%
CTGCACTCAATCAGATTCAT+GGG + chr2_3:48823152-48823171 None:intergenic 40.0%
GAGGCTAAAATCAGCAACTT+TGG - chr2_3:48823185-48823204 Msa0295980:intron 40.0%
TTTGGCAACAAAGTTAGCTG+AGG - chr2_3:48823203-48823222 Msa0295980:intron 40.0%
AACTGAACTTAACGCTCTAC+GGG + chr2_3:48823279-48823298 None:intergenic 40.0%
CAACTGAACTTAACGCTCTA+CGG + chr2_3:48823280-48823299 None:intergenic 40.0%
! GTAAGCCATGTCATTTCAGT+CGG + chr2_3:48823449-48823468 None:intergenic 40.0%
TTACAATGTCTAGTCCCGTT+CGG - chr2_3:48823465-48823484 Msa0295980:intron 40.0%
CACACTATGGACCTTATCAA+CGG + chr2_3:48823573-48823592 None:intergenic 40.0%
! GAGTACGGACACATGTTTTA+TGG + chr2_3:48823603-48823622 None:intergenic 40.0%
ATAACGTCACTAACCACAAG+GGG + chr2_3:48823630-48823649 None:intergenic 40.0%
ATTGGAAGGTAGGTGATTAG+AGG + chr2_3:48823834-48823853 None:intergenic 40.0%
TTACCGAAAGCCACATTTCA+TGG - chr2_3:48824263-48824282 Msa0295980:intron 40.0%
CAACCATGAAATGTGGCTTT+CGG + chr2_3:48824269-48824288 None:intergenic 40.0%
TGAGAAAACAACGGCTCTTA+CGG + chr2_3:48821215-48821234 Msa0295970:CDS 40.0%
!!! ACTTTGTCTTTTGGGTTAGC+TGG + chr2_3:48824719-48824738 None:intergenic 40.0%
TCATGGTCAAATGTGACTGA+TGG - chr2_3:48824911-48824930 Msa0295980:intron 40.0%
AAACAATGTGATCGCAATCG+GGG + chr2_3:48824939-48824958 None:intergenic 40.0%
! GGCATTGTTTTCTACTTCCA+TGG - chr2_3:48825099-48825118 Msa0295980:CDS 40.0%
! TTTTCTACTTCCATGGAAGG+AGG - chr2_3:48825106-48825125 Msa0295980:CDS 40.0%
!! TACTTGGATTCAAGCATTGG+GGG - chr2_3:48821924-48821943 Msa0295980:intron 40.0%
AAGCCACACCATCATCAATT+TGG - chr2_3:48821977-48821996 Msa0295980:intron 40.0%
AGCCACACCATCATCAATTT+GGG - chr2_3:48821978-48821997 Msa0295980:intron 40.0%
!! ATCCCAAATTGATGATGGTG+TGG + chr2_3:48821983-48822002 None:intergenic 40.0%
TCGTCATCCCAAATTGATGA+TGG + chr2_3:48825282-48825301 None:intergenic 40.0%
CGTCATAAGAGAGCTTCAAA+TGG + chr2_3:48822017-48822036 None:intergenic 40.0%
GAGAGAACATCGAATGAGAA+CGG - chr2_3:48822105-48822124 Msa0295980:intron 40.0%
GGTTTATCGTCCAAAGTTGA+AGG - chr2_3:48822267-48822286 Msa0295980:intron 40.0%
TCCAAAGTTGAAGGAGTTCT+TGG - chr2_3:48822276-48822295 Msa0295980:intron 40.0%
TCCAAGAACTCCTTCAACTT+TGG + chr2_3:48822280-48822299 None:intergenic 40.0%
ATCTGAAGAAACAAGGGATG+TGG + chr2_3:48825679-48825698 None:intergenic 40.0%
TTCTGCTAAAGATTCAGTGC+AGG - chr2_3:48822425-48822444 Msa0295980:intron 40.0%
GAAGGCTTGGAGATTGAATA+TGG - chr2_3:48825741-48825760 Msa0295980:CDS 40.0%
!! TATGGTATGATGGATTGCAC+GGG - chr2_3:48822465-48822484 Msa0295980:intron 40.0%
AACTATACCATTACCACTGC+TGG + chr2_3:48825790-48825809 None:intergenic 40.0%
AAAACAACGGCTCTTACGGT+TGG + chr2_3:48821211-48821230 Msa0295970:CDS 45.0%
GATCTTGAAGGACATTGAGC+AGG + chr2_3:48821252-48821271 Msa0295970:CDS 45.0%
AAGATCACCAGCTAACCCAA+GGG - chr2_3:48821266-48821285 Msa0295980:CDS 45.0%
!!! ACTTTTTCCCTTGGGTTAGC+TGG + chr2_3:48821276-48821295 Msa0295970:CDS 45.0%
CAAAGATACTCGTTACCGAG+AGG - chr2_3:48821474-48821493 Msa0295980:CDS 45.0%
AATGCTCATTCCTCCTTCCA+TGG + chr2_3:48821825-48821844 None:intergenic 45.0%
GAGGAATGAGCATTTCAGCT+TGG - chr2_3:48821831-48821850 Msa0295980:CDS 45.0%
! ATGCTCGTTTTATCGGCCTT+AGG - chr2_3:48821878-48821897 Msa0295980:intron 45.0%
GGAGACCAAGGGATTATACT+TGG - chr2_3:48821908-48821927 Msa0295980:intron 45.0%
! GAAGCTCTCTTATGACGGAA+AGG - chr2_3:48822020-48822039 Msa0295980:intron 45.0%
AAGGATCTCGTAATCCCTGA+AGG - chr2_3:48822039-48822058 Msa0295980:intron 45.0%
! ATCGAATGAGAACGGTGTCA+TGG - chr2_3:48822113-48822132 Msa0295980:intron 45.0%
ATGGATTCTACTGTCCTCCT+TGG + chr2_3:48822187-48822206 None:intergenic 45.0%
TTTCAAAATCCGGCAAAGCC+AGG - chr2_3:48822318-48822337 Msa0295980:intron 45.0%
ATCTGAAGATGCAAGGGATG+TGG + chr2_3:48822385-48822404 None:intergenic 45.0%
GCTAAAGATTCAGTGCAGGA+AGG - chr2_3:48822429-48822448 Msa0295980:intron 45.0%
ATGTTATGGGATGTACTCGG+TGG - chr2_3:48822769-48822788 Msa0295980:intron 45.0%
TGAGTACAACCTTGCTCTCT+AGG - chr2_3:48822982-48823001 Msa0295980:intron 45.0%
! TACAACCTTGCTCTCTAGGA+AGG - chr2_3:48822986-48823005 Msa0295980:intron 45.0%
! TGAAGTGCTATGCACAAGAC+CGG + chr2_3:48823025-48823044 None:intergenic 45.0%
CCTGCACTCAATCAGATTCA+TGG + chr2_3:48823153-48823172 None:intergenic 45.0%
CCATGAATCTGATTGAGTGC+AGG - chr2_3:48823150-48823169 Msa0295980:intron 45.0%
AATCTGATTGAGTGCAGGAC+CGG - chr2_3:48823155-48823174 Msa0295980:intron 45.0%
!! GATTTTAGCCTCTCCAAAGC+CGG + chr2_3:48823177-48823196 None:intergenic 45.0%
GTTAAGCAACTCAGAGCTGA+GGG + chr2_3:48823252-48823271 None:intergenic 45.0%
AGTTAAGCAACTCAGAGCTG+AGG + chr2_3:48823253-48823272 None:intergenic 45.0%
! CGTAGAGCGTTAAGTTCAGT+TGG - chr2_3:48823278-48823297 Msa0295980:intron 45.0%
! TCATGCCGACTGAAATGACA+TGG - chr2_3:48823441-48823460 Msa0295980:intron 45.0%
TACCCACAGAAATAGCCGAA+CGG + chr2_3:48823483-48823502 None:intergenic 45.0%
!! GTGTTTGTTTTCCCTCGTTG+AGG - chr2_3:48823505-48823524 Msa0295980:intron 45.0%
ATGAAATGCAGCCGAAAGTG+GGG + chr2_3:48823542-48823561 None:intergenic 45.0%
CATGAAATGCAGCCGAAAGT+GGG + chr2_3:48823543-48823562 None:intergenic 45.0%
CATGGCATGATCCGTTGATA+AGG - chr2_3:48823559-48823578 Msa0295980:intron 45.0%
GACGTTATAAACAGGCAGCA+TGG - chr2_3:48823642-48823661 Msa0295980:intron 45.0%
TGACTTCTACACGCACGTAT+TGG - chr2_3:48823718-48823737 Msa0295980:intron 45.0%
AGGCTATATCAGCCGAACTA+TGG + chr2_3:48823772-48823791 None:intergenic 45.0%
ACGTGAGTGAGATGAATTGC+TGG + chr2_3:48824409-48824428 None:intergenic 45.0%
AAAACAACGGCTCTTACGGT+TGG + chr2_3:48821211-48821230 Msa0295970:CDS 45.0%
!! ATCTTGAAGGGCACTGAGTA+GGG + chr2_3:48824694-48824713 None:intergenic 45.0%
! GGTTAGCTGGTGATCTTGAA+GGG + chr2_3:48821263-48821282 Msa0295970:CDS 45.0%
! TTGCACTGAGTTTTGCACAC+AGG + chr2_3:48824764-48824783 None:intergenic 45.0%
CATGACTCTCCGCAATATCA+AGG + chr2_3:48824896-48824915 None:intergenic 45.0%
CTTGATATTGCGGAGAGTCA+TGG - chr2_3:48824894-48824913 Msa0295980:intron 45.0%
GATCCGCGACCATTACAATT+TGG + chr2_3:48825045-48825064 None:intergenic 45.0%
! ATGCTCGTTTTATCGGCCTT+AGG - chr2_3:48821878-48821897 Msa0295980:intron 45.0%
GGAGACCAAGGGATTATACT+TGG - chr2_3:48821908-48821927 Msa0295980:intron 45.0%
! GAAGCTCTCTTATGACGGAA+AGG - chr2_3:48822020-48822039 Msa0295980:intron 45.0%
AAGGATCTCGTAATCCCTGA+AGG - chr2_3:48822039-48822058 Msa0295980:intron 45.0%
! ATCGAATGAGAACGGTGTCA+TGG - chr2_3:48822113-48822132 Msa0295980:intron 45.0%
ATGGATTCTACTGTCCTCCT+TGG + chr2_3:48822187-48822206 None:intergenic 45.0%
TTTCAAAATCCGGCAAAGCC+AGG - chr2_3:48822318-48822337 Msa0295980:intron 45.0%
GCTAAAGATTCAGTGCAGGA+AGG - chr2_3:48822429-48822448 Msa0295980:intron 45.0%
!! GGGTTAGCTGGTGATCTTGA+AGG + chr2_3:48821264-48821283 Msa0295970:CDS 50.0%
CAAGATCACCAGCTAACCCA+AGG - chr2_3:48821265-48821284 Msa0295980:CDS 50.0%
TAATCCCTTGGTCTCCCTTG+CGG + chr2_3:48821904-48821923 None:intergenic 50.0%
! ATTTTCCTCGGATTGCCACG+TGG + chr2_3:48822073-48822092 None:intergenic 50.0%
TGGCTATGCCAGTAGTTGGA+GGG - chr2_3:48822343-48822362 Msa0295980:intron 50.0%
TTGTCTTCCCCTCCAACTAC+TGG + chr2_3:48822354-48822373 None:intergenic 50.0%
AGATTCAGTGCAGGAAGGCA+TGG - chr2_3:48822434-48822453 Msa0295980:intron 50.0%
!! GGTATGATGGATTGCACTGG+TGG - chr2_3:48822468-48822487 Msa0295980:intron 50.0%
! CTTGCTCTCTAGGAAGGACA+GGG - chr2_3:48822992-48823011 Msa0295980:intron 50.0%
CAATCAGATTCATGGGCGCT+CGG + chr2_3:48823145-48823164 None:intergenic 50.0%
!! TCCCGTTCGGCTATTTCTGT+GGG - chr2_3:48823478-48823497 Msa0295980:intron 50.0%
ACCCACAGAAATAGCCGAAC+GGG + chr2_3:48823482-48823501 None:intergenic 50.0%
TGCTACGATCACCTCAACGA+GGG + chr2_3:48823519-48823538 None:intergenic 50.0%
TGATCGTAGCACCCCACTTT+CGG - chr2_3:48823528-48823547 Msa0295980:intron 50.0%
CCATGAAATGCAGCCGAAAG+TGG + chr2_3:48823544-48823563 None:intergenic 50.0%
CCACTTTCGGCTGCATTTCA+TGG - chr2_3:48823541-48823560 Msa0295980:intron 50.0%
GCCTTCGCTTAACATTCCCT+CGG - chr2_3:48823788-48823807 Msa0295980:intron 50.0%
!! GATCTTGAAGGGCACTGAGT+AGG + chr2_3:48824695-48824714 None:intergenic 50.0%
!! GGGTTAGCTGGTGATCTTGA+AGG + chr2_3:48821264-48821283 Msa0295970:CDS 50.0%
AGTGCTCATTCCTCCTTCCA+TGG + chr2_3:48825119-48825138 None:intergenic 50.0%
GAGGAATGAGCACTTCAGCT+TGG - chr2_3:48825125-48825144 Msa0295980:CDS 50.0%
TAATCCCTTGGTCTCCCTTG+CGG + chr2_3:48821904-48821923 None:intergenic 50.0%
ACGTAGAGAGGTGACCTTCA+GGG + chr2_3:48825350-48825369 None:intergenic 50.0%
TTGTCTTCCCCTCCAATGAC+CGG + chr2_3:48825648-48825667 None:intergenic 50.0%
AGATTCAGTGCAGGAAGGCT+TGG - chr2_3:48825728-48825747 Msa0295980:CDS 50.0%
GAAGGACATTGAGCAGGGCA+AGG + chr2_3:48821246-48821265 Msa0295970:CDS 55.0%
TGCTTGGACCCTCGTTTCGT+TGG - chr2_3:48821775-48821794 Msa0295980:CDS 55.0%
CATCCGCACCAACGAAACGA+GGG + chr2_3:48821786-48821805 None:intergenic 55.0%
TTTATCGGCCTTAGGCCGCA+AGG - chr2_3:48821886-48821905 Msa0295980:intron 55.0%
TTATCGGCCTTAGGCCGCAA+GGG - chr2_3:48821887-48821906 Msa0295980:intron 55.0%
ACGTGGAGAGGTGACCTTCA+GGG + chr2_3:48822056-48822075 None:intergenic 55.0%
CAATGTGGTGCCTGTCACCA+AGG - chr2_3:48822167-48822186 Msa0295980:CDS 55.0%
! CTACTGTCCTCCTTGGTGAC+AGG + chr2_3:48822180-48822199 None:intergenic 55.0%
AAATCCGGCAAAGCCAGGTG+TGG - chr2_3:48822323-48822342 Msa0295980:intron 55.0%
!! ATAGCCACACCTGGCTTTGC+CGG + chr2_3:48822330-48822349 None:intergenic 55.0%
ACTACTGGCATAGCCACACC+TGG + chr2_3:48822339-48822358 None:intergenic 55.0%
GGTGTGGCTATGCCAGTAGT+TGG - chr2_3:48822339-48822358 Msa0295980:intron 55.0%
GTGGCTATGCCAGTAGTTGG+AGG - chr2_3:48822342-48822361 Msa0295980:intron 55.0%
GGCTATGCCAGTAGTTGGAG+GGG - chr2_3:48822344-48822363 Msa0295980:intron 55.0%
CCTGTCCTTCCTAGAGAGCA+AGG + chr2_3:48822994-48823013 None:intergenic 55.0%
! CCTTGCTCTCTAGGAAGGAC+AGG - chr2_3:48822991-48823010 Msa0295980:intron 55.0%
! ATTGAGTGCAGGACCGGCTT+TGG - chr2_3:48823161-48823180 Msa0295980:intron 55.0%
!! GTCCCGTTCGGCTATTTCTG+TGG - chr2_3:48823477-48823496 Msa0295980:intron 55.0%
GTGCTACGATCACCTCAACG+AGG + chr2_3:48823520-48823539 None:intergenic 55.0%
ACCACAAGGGGCGATGAGTA+CGG + chr2_3:48823618-48823637 None:intergenic 55.0%
GCCGAGGGAATGTTAAGCGA+AGG + chr2_3:48823792-48823811 None:intergenic 55.0%
TCGCTTAACATTCCCTCGGC+TGG - chr2_3:48823792-48823811 Msa0295980:intron 55.0%
CGCTTAACATTCCCTCGGCT+GGG - chr2_3:48823793-48823812 Msa0295980:intron 55.0%
TTAACATTCCCTCGGCTGGG+AGG - chr2_3:48823796-48823815 Msa0295980:intron 55.0%
GATCTGCATGCTTGGACCCT+CGG - chr2_3:48825061-48825080 Msa0295980:CDS 55.0%
TTTATCGGCCTTAGGCCGCA+AGG - chr2_3:48821886-48821905 Msa0295980:intron 55.0%
TTATCGGCCTTAGGCCGCAA+GGG - chr2_3:48821887-48821906 Msa0295980:intron 55.0%
CACGTAGAGAGGTGACCTTC+AGG + chr2_3:48825351-48825370 None:intergenic 55.0%
CTGAAGGTCACCTCTCTACG+TGG - chr2_3:48825349-48825368 Msa0295980:intron 55.0%
CAATGTGGTGCCTGTCACCA+AGG - chr2_3:48822167-48822186 Msa0295980:CDS 55.0%
! CTACTGTCCTCCTTGGTGAC+AGG + chr2_3:48822180-48822199 None:intergenic 55.0%
TGGCAATGCCGGTCATTGGA+GGG - chr2_3:48825637-48825656 Msa0295980:CDS 55.0%
!! GGTATGATGGATTGCACGGG+TGG - chr2_3:48825762-48825781 Msa0295980:CDS 55.0%
GGACCCTCGTTTCGTTGGTG+CGG - chr2_3:48821780-48821799 Msa0295980:CDS 60.0%
CCATCCGCACCAACGAAACG+AGG + chr2_3:48821787-48821806 None:intergenic 60.0%
CCTCGTTTCGTTGGTGCGGA+TGG - chr2_3:48821784-48821803 Msa0295980:CDS 60.0%
TTGGTCTCCCTTGCGGCCTA+AGG + chr2_3:48821897-48821916 None:intergenic 60.0%
TTAGGCCGCAAGGGAGACCA+AGG - chr2_3:48821896-48821915 Msa0295980:intron 60.0%
TAGGCCGCAAGGGAGACCAA+GGG - chr2_3:48821897-48821916 Msa0295980:intron 60.0%
CACGTGGAGAGGTGACCTTC+AGG + chr2_3:48822057-48822076 None:intergenic 60.0%
CTGAAGGTCACCTCTCCACG+TGG - chr2_3:48822055-48822074 Msa0295980:intron 60.0%
TGTGGTGCCTGTCACCAAGG+AGG - chr2_3:48822170-48822189 Msa0295980:CDS 60.0%
! TGCACTGGTGGTGCTAGCAG+TGG - chr2_3:48822480-48822499 Msa0295980:intron 60.0%
! GGTGGTGCTAGCAGTGGCAA+TGG - chr2_3:48822486-48822505 Msa0295980:intron 60.0%
TCCGTACTCATCGCCCCTTG+TGG - chr2_3:48823614-48823633 Msa0295980:intron 60.0%
ACGAGTTTCCTCCCAGCCGA+GGG + chr2_3:48823807-48823826 None:intergenic 60.0%
TGGTCGCGGATCTGCATGCT+TGG - chr2_3:48825053-48825072 Msa0295980:CDS 60.0%
! TGCTTGGACCCTCGGTTCGT+TGG - chr2_3:48825069-48825088 Msa0295980:CDS 60.0%
CATCCGCACCAACGAACCGA+GGG + chr2_3:48825080-48825099 None:intergenic 60.0%
TTGGTCTCCCTTGCGGCCTA+AGG + chr2_3:48821897-48821916 None:intergenic 60.0%
TTAGGCCGCAAGGGAGACCA+AGG - chr2_3:48821896-48821915 Msa0295980:intron 60.0%
TAGGCCGCAAGGGAGACCAA+GGG - chr2_3:48821897-48821916 Msa0295980:intron 60.0%
CGTCGGATTGCCACGTAGAG+AGG + chr2_3:48825362-48825381 None:intergenic 60.0%
TGTGGTGCCTGTCACCAAGG+AGG - chr2_3:48822170-48822189 Msa0295980:CDS 60.0%
AAATCCGGCAAAGCCAGGCG+TGG - chr2_3:48825617-48825636 Msa0295980:CDS 60.0%
!! ATTGCCACGCCTGGCTTTGC+CGG + chr2_3:48825624-48825643 None:intergenic 60.0%
AAAGCCAGGCGTGGCAATGC+CGG - chr2_3:48825626-48825645 Msa0295980:CDS 60.0%
GTGGCAATGCCGGTCATTGG+AGG - chr2_3:48825636-48825655 Msa0295980:CDS 60.0%
GGCAATGCCGGTCATTGGAG+GGG - chr2_3:48825638-48825657 Msa0295980:CDS 60.0%
! GGTGGTGCCAGCAGTGGTAA+TGG - chr2_3:48825780-48825799 Msa0295980:CDS 60.0%
GGTCCAAGCACGCAGATCCG+CGG + chr2_3:48821765-48821784 None:intergenic 65.0%
CCTCGGATTGCCACGTGGAG+AGG + chr2_3:48822068-48822087 None:intergenic 65.0%
CCTCTCCACGTGGCAATCCG+AGG - chr2_3:48822065-48822084 Msa0295980:intron 65.0%
GGAAGGACAGGGTTCAGCGC+CGG - chr2_3:48823003-48823022 Msa0295980:intron 65.0%
!! GTGCAGGACCGGCTTTGGAG+AGG - chr2_3:48823166-48823185 Msa0295980:intron 65.0%
GACGAGTTTCCTCCCAGCCG+AGG + chr2_3:48823808-48823827 None:intergenic 65.0%
! GGACCCTCGGTTCGTTGGTG+CGG - chr2_3:48825074-48825093 Msa0295980:CDS 65.0%
CCATCCGCACCAACGAACCG+AGG + chr2_3:48825081-48825100 None:intergenic 65.0%
! CCTCGGTTCGTTGGTGCGGA+TGG - chr2_3:48825078-48825097 Msa0295980:CDS 65.0%
ATGACCGGCATTGCCACGCC+TGG + chr2_3:48825633-48825652 None:intergenic 65.0%
GGCGTGGCAATGCCGGTCAT+TGG - chr2_3:48825633-48825652 Msa0295980:CDS 65.0%
TGGCCGCGGATCTGCGTGCT+TGG - chr2_3:48821759-48821778 Msa0295980:CDS 70.0%
! TGCACGGGTGGTGCCAGCAG+TGG - chr2_3:48825774-48825793 Msa0295980:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 48821105 48825821 48821105 ID=Msa0295980;Name=Msa0295980
chr2_3 mRNA 48821105 48825821 48821105 ID=Msa0295980-mRNA-1;Parent=Msa0295980;Name=Msa0295980-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|0.2|0.16|6|0|601
chr2_3 exon 48825584 48825821 48825584 ID=Msa0295980-mRNA-1:exon:15374;Parent=Msa0295980-mRNA-1
chr2_3 exon 48824981 48825186 48824981 ID=Msa0295980-mRNA-1:exon:15373;Parent=Msa0295980-mRNA-1
chr2_3 exon 48824659 48824902 48824659 ID=Msa0295980-mRNA-1:exon:15372;Parent=Msa0295980-mRNA-1
chr2_3 exon 48824414 48824637 48824414 ID=Msa0295980-mRNA-1:exon:15371;Parent=Msa0295980-mRNA-1
chr2_3 exon 48822141 48822246 48822141 ID=Msa0295980-mRNA-1:exon:15370;Parent=Msa0295980-mRNA-1
chr2_3 exon 48821105 48821892 48821105 ID=Msa0295980-mRNA-1:exon:15369;Parent=Msa0295980-mRNA-1
chr2_3 CDS 48825584 48825821 48825584 ID=Msa0295980-mRNA-1:cds;Parent=Msa0295980-mRNA-1
chr2_3 CDS 48824981 48825186 48824981 ID=Msa0295980-mRNA-1:cds;Parent=Msa0295980-mRNA-1
chr2_3 CDS 48824659 48824902 48824659 ID=Msa0295980-mRNA-1:cds;Parent=Msa0295980-mRNA-1
chr2_3 CDS 48824414 48824637 48824414 ID=Msa0295980-mRNA-1:cds;Parent=Msa0295980-mRNA-1
chr2_3 CDS 48822141 48822246 48822141 ID=Msa0295980-mRNA-1:cds;Parent=Msa0295980-mRNA-1
chr2_3 CDS 48821105 48821892 48821105 ID=Msa0295980-mRNA-1:cds;Parent=Msa0295980-mRNA-1
Gene Sequence

>Msa0295980

ATGGATTTCTCAAGCAACAACAAATGCTTAATGTTTGTTTTGTGTTTATTTGTTTTTGTATCTTCATGTGTGATGTGTGTTAATGTTGATACTCAAACATGTACCAACCGTAAGAGCCGTTGTTTTCTCAAGAAACTACCTTGCCCTGCTCAATGTCCTTCAAGATCACCAGCTAACCCAAGGGAAAAAGTTTGTTATCTTGATTGTGATTCTCCTATGTGCAAAACTCAGTGCAAAAGTCGTAAAGCAAATTGTAATGGCCGCGGATCTGCGTGCTTGGACCCTCGTTTCGTTGGTGCGGATGGCATTGTTTTCTATTTCCATGGAAGGAGGAATGAGCATTTCAGCTTGGTATCTGACACCAACCTTCAAATCAATGCTCGTTTTATCGGCCTTAGGCCGCAAGGGAGACCAAGGGATTATACTTGGATTCAAGCATTGGGGCTCTCTTATGACGGAAAGGATCTCGTAATCCCTGAAGGTCACCTCTCCACGTGGCAATCCGAGGAAAATCAACTTAGAGTCGAGAGAACATCGAATGAGAACGGTGTCATGGTTACAATCCCAGAAGTTGCTGAAATATCTGTCAATGTGGTGCCTGTCACCAAGGAGGACAGTAGAATCCATAATTATCAGATTCCTGATGATGATTGTTTTGCTCATTTGGATGTGCAGTTCAAATTCTATGGAGTTCTTGGAAGAACTTATCAGCCAGATTTTCAAAATCCGGCAAAGCCAGGTGTGGCTATGCCAGTAGTTGGAGGGGAAGACAAGTATAGAACCACATCCCTTGCATCTTCAGATTGTCTTGCTTGTATATTCTCTTCTGCTAAAGATTCAGTGCAGGAAGGCATGGATATTGAGTATGGTATGATGGATTGCACTGGTGGTGCTAGCAGTGGCAATGGTATAAAACTGAGTTGCCCTACTCAGTGCCCTTCAAGATCACCAGCTAACCCAAAAGACAAAGTTTGCTATCTTGATTGTGATTCTCCTGTGTGCAAAACTCAGTGCAAAAGTCGTAAACCAAATTGTAATGGTCGCGGATCTGCATGCTTGGACCCTCGGTTCGTTGGTGCGGATGGCATTGTTTTCTACTTCCATGGAAGGAGGAATGAGCACTTCAGCTTGGTATCTGACGTGAACCTTCAAATCAATGCTCGTTTTATCGGCCTTAGGCCGCAAGGGAGACCAAGGGATTATACTTGGATTCAAGCATTGGGGGTCCTCTTTGATTCACACAACTTTTCTATTGAAGCCACACCATCATCAATTTGGGATGACGAAGTTGACCATTTGAAGCTCTCTTATGACGGAAAGGATCTCGTAATCCCTGAAGGTCACCTCTCTACGTGGCAATCCGACGAAAATCAACTTAGAGTCGAGAGAACATCGAATGAGAACGGTGTCATGGTTACAATCCCAGAAGTTGCTGAAATATCTGTCAATGTGGTGCCTGTCACCAAGGAGGACAGTAGAATCCATAATTATCAGATTCCTGATGATGATTGTTTTGCTCATTTGGATGTGCAGTTCAAATTCTATGGTTTATCGTCCAAAGTTGAAGGAGTTCTTGGAAGAACTTATCAGCCAGATTTTCAAAATCCGGCAAAGCCAGGCGTGGCAATGCCGGTCATTGGAGGGGAAGACAAGTATAGAACCACATCCCTTGTTTCTTCAGATTGTCTTGCTTGTATATTCTCTTCTGCTAAAGATTCAGTGCAGGAAGGCTTGGAGATTGAATATGGTATGATGGATTGCACGGGTGGTGCCAGCAGTGGTAATGGTATAGTTTGCAGAAGATAA

Protein sequence

>Msa0295980

MDFSSNNKCLMFVLCLFVFVSSCVMCVNVDTQTCTNRKSRCFLKKLPCPAQCPSRSPANPREKVCYLDCDSPMCKTQCKSRKANCNGRGSACLDPRFVGADGIVFYFHGRRNEHFSLVSDTNLQINARFIGLRPQGRPRDYTWIQALGLSYDGKDLVIPEGHLSTWQSEENQLRVERTSNENGVMVTIPEVAEISVNVVPVTKEDSRIHNYQIPDDDCFAHLDVQFKFYGVLGRTYQPDFQNPAKPGVAMPVVGGEDKYRTTSLASSDCLACIFSSAKDSVQEGMDIEYGMMDCTGGASSGNGIKLSCPTQCPSRSPANPKDKVCYLDCDSPVCKTQCKSRKPNCNGRGSACLDPRFVGADGIVFYFHGRRNEHFSLVSDVNLQINARFIGLRPQGRPRDYTWIQALGVLFDSHNFSIEATPSSIWDDEVDHLKLSYDGKDLVIPEGHLSTWQSDENQLRVERTSNENGVMVTIPEVAEISVNVVPVTKEDSRIHNYQIPDDDCFAHLDVQFKFYGLSSKVEGVLGRTYQPDFQNPAKPGVAMPVIGGEDKYRTTSLVSSDCLACIFSSAKDSVQEGLEIEYGMMDCTGGASSGNGIVCRR*