AlfalfaGEDB | Msa0369570

M. sativa cultivar zhongmu-4 / Msa0369570

KEGG: -
GO: -
PFAM: PF00364.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0369570	XP_003601001.1	94.891	274	9	1	1	269	1	274	0.0	532

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0369570	G7J2E7	94.891	274	9	1	1	269	1	274	0.0	532

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0369570	-0.819835	9.428046e-53	-8.615850e-47
Msa0001950	Msa0369570	0.851268	9.911800e-61	-8.615850e-47
Msa0003470	Msa0369570	0.815180	1.054960e-51	-8.615850e-47
Msa0005050	Msa0369570	0.809932	1.481621e-50	-8.615850e-47
Msa0008830	Msa0369570	0.810544	1.093647e-50	-8.615850e-47
Msa0011720	Msa0369570	0.853889	1.772384e-61	-8.615850e-47
Msa0012440	Msa0369570	0.834387	3.087318e-56	-8.615850e-47
Msa0014920	Msa0369570	0.815541	8.768799e-52	-8.615850e-47
Msa0017120	Msa0369570	0.824734	6.874726e-54	-8.615850e-47
Msa0017510	Msa0369570	0.804051	2.600847e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0369570	MtrunA17_Chr3g0114231	94.891	274	9	1	1	269	1	274	0.0	532
Msa0369570	MtrunA17_Chr5g0437771	54.949	293	94	6	1	269	1	279	2.14e-95	281
Msa0369570	MtrunA17_Chr2g0332621	41.294	201	97	8	78	269	85	273	6.90e-33	121

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0369570	AT3G56130.1	51.049	286	114	8	1	268	1	278	2.59e-80	244
Msa0369570	AT3G56130.2	59.788	189	67	3	87	268	16	202	4.93e-69	212
Msa0369570	AT3G56130.4	49.064	267	110	8	1	249	1	259	1.15e-66	209
Msa0369570	AT3G56130.3	57.692	182	62	4	100	268	12	191	2.51e-59	187
Msa0369570	AT3G56130.5	47.951	244	103	7	1	226	1	238	2.60e-58	186
Msa0369570	AT3G15690.2	34.599	237	121	7	44	269	47	260	1.18e-35	128
Msa0369570	AT1G52670.1	32.645	242	130	6	44	269	47	271	1.59e-34	125
Msa0369570	AT3G15690.1	33.180	217	111	7	44	249	47	240	1.65e-26	104
Msa0369570	AT3G15690.3	33.180	217	111	7	44	249	49	242	1.72e-26	104

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Find 110 sgRNAs with CRISPR-Local

Find 452 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCTTTCAATACGGTAA+CGG	0.626342	3_1:+66916507	None:intergenic
AAAGGATCGAATGGCAGCGG+AGG	0.605922	3_1:-66916682	None:intergenic
AACGGAGAACTTGATGAGAG+TGG	0.641274	3_1:+66916525	Msa0369570:five_prime_UTR
AACTACAGCTGCCCTCTCAA+TGG	0.493028	3_1:-66918323	None:intergenic
AAGCTACTTGTTGAGGAGGG+AGG	0.613027	3_1:+66922044	Msa0369570:CDS
AATCACCTTAACGGGAATTC+CGG	0.390251	3_1:-66921919	None:intergenic
AATCGCTGAACTGAGATTAA+AGG	0.279265	3_1:+66919627	Msa0369570:CDS
AATCGTTTGTGCTTTCATAT+TGG	0.250894	3_1:+66923113	Msa0369570:three_prime_UTR
AATGGCAGCGGAGGAATCCA+TGG	0.511605	3_1:-66916673	None:intergenic
AATTAATTGAAGTGCTTCAT+TGG	0.313276	3_1:-66916556	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGTAGATACAAAGAGAGA+GGG	-	chr3_1:66916724-66916743	None:intergenic	30.0%
AAATGTAGATACAAAGAGAG+AGG	-	chr3_1:66916725-66916744	None:intergenic	30.0%
CTGTAAATGTTGAGATTGTT+AGG	+	chr3_1:66917115-66917134	Msa0369570:intron	30.0%
GCTTAAAAAACCAGTTACTT+TGG	-	chr3_1:66917275-66917294	None:intergenic	30.0%
TAATCCTATAGCTATGTCAT+TGG	-	chr3_1:66917538-66917557	None:intergenic	30.0%
TGATAACACAATCATTGTGT+TGG	-	chr3_1:66917868-66917887	None:intergenic	30.0%
TAGCAATAGGGACTTAATAT+AGG	-	chr3_1:66918198-66918217	None:intergenic	30.0%
TCATTCAAATAGCAACCAAA+AGG	-	chr3_1:66918487-66918506	None:intergenic	30.0%
TATTAGGAACAAGACAGAAT+AGG	+	chr3_1:66919034-66919053	Msa0369570:intron	30.0%
GTTATTGATAAAAGAAGGGA+AGG	+	chr3_1:66919078-66919097	Msa0369570:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_1	gene	66916511	66923409	66916511	ID=Msa0369570;Name=Msa0369570
chr3_1	mRNA	66916511	66923409	66916511	ID=Msa0369570-mRNA-1;Parent=Msa0369570;Name=Msa0369570-mRNA-1;_AED=0.08;_eAED=0.08;_QI=164\|0.87\|0.88\|1\|0.87\|0.88\|9\|382\|269
chr3_1	exon	66916511	66916708	66916511	ID=Msa0369570-mRNA-1:exon:13652;Parent=Msa0369570-mRNA-1
chr3_1	exon	66918290	66918442	66918290	ID=Msa0369570-mRNA-1:exon:13653;Parent=Msa0369570-mRNA-1
chr3_1	exon	66919270	66919346	66919270	ID=Msa0369570-mRNA-1:exon:13654;Parent=Msa0369570-mRNA-1
chr3_1	exon	66919595	66919648	66919595	ID=Msa0369570-mRNA-1:exon:13655;Parent=Msa0369570-mRNA-1
chr3_1	exon	66920387	66920632	66920387	ID=Msa0369570-mRNA-1:exon:13656;Parent=Msa0369570-mRNA-1
chr3_1	exon	66920811	66920873	66920811	ID=Msa0369570-mRNA-1:exon:13657;Parent=Msa0369570-mRNA-1
chr3_1	exon	66921861	66921935	66921861	ID=Msa0369570-mRNA-1:exon:13658;Parent=Msa0369570-mRNA-1
chr3_1	exon	66922020	66922065	66922020	ID=Msa0369570-mRNA-1:exon:13659;Parent=Msa0369570-mRNA-1
chr3_1	exon	66922966	66923409	66922966	ID=Msa0369570-mRNA-1:exon:13660;Parent=Msa0369570-mRNA-1
chr3_1	five_prime_UTR	66916511	66916674	66916511	ID=Msa0369570-mRNA-1:five_prime_utr;Parent=Msa0369570-mRNA-1
chr3_1	CDS	66916675	66916708	66916675	ID=Msa0369570-mRNA-1:cds;Parent=Msa0369570-mRNA-1
chr3_1	CDS	66918290	66918442	66918290	ID=Msa0369570-mRNA-1:cds;Parent=Msa0369570-mRNA-1
chr3_1	CDS	66919270	66919346	66919270	ID=Msa0369570-mRNA-1:cds;Parent=Msa0369570-mRNA-1
chr3_1	CDS	66919595	66919648	66919595	ID=Msa0369570-mRNA-1:cds;Parent=Msa0369570-mRNA-1
chr3_1	CDS	66920387	66920632	66920387	ID=Msa0369570-mRNA-1:cds;Parent=Msa0369570-mRNA-1
chr3_1	CDS	66920811	66920873	66920811	ID=Msa0369570-mRNA-1:cds;Parent=Msa0369570-mRNA-1
chr3_1	CDS	66921861	66921935	66921861	ID=Msa0369570-mRNA-1:cds;Parent=Msa0369570-mRNA-1
chr3_1	CDS	66922020	66922065	66922020	ID=Msa0369570-mRNA-1:cds;Parent=Msa0369570-mRNA-1
chr3_1	CDS	66922966	66923027	66922966	ID=Msa0369570-mRNA-1:cds;Parent=Msa0369570-mRNA-1
chr3_1	three_prime_UTR	66923028	66923409	66923028	ID=Msa0369570-mRNA-1:three_prime_utr;Parent=Msa0369570-mRNA-1

Gene Sequence

>Msa0369570

ATGGATTCCTCCGCTGCCATTCGATCCTTTCACTATCCCATAGGCACTATATCCCATGTGCGATCCTCCATTGAGAGGGCAGCTGTAGTTCCCTGCCATAAAATCAGATGGAACTCTAATAGAGGGAAGAAGACATTGATTTCGTGTGCAAAAGCAGTTGAAGCTATCAACACAACCAAGTCTGATGCTTCTTTGGACAGCACTCAACAAGACAAATTAGAGAAAAAGCCATTGCAAACTGCTACTTTTCCTAATGGATTTGAGGCTTTGATATTAGATGTCTGTGACGAGACTGAAATCGCTGAACTGAGATTAAAGGTTGGTGAGTTTGAGATGCATCTTAAGCGTAACATTGGAGCAACAAAAGCTCCATTGTCTAACATTTCACCAACTACACCACCACCTATTCCAAGCAAACCTATGGATGAATCAGCGCCGGCTACCGCACAGCCATTGCCACCAACATCATCTTCAGAAAAAACCAACCCATTTGCAAATGTTTCCTCACAAAAGTCATCAAAGTTAATAGCATTGGAGGCTTCTGGTACCAATACATACGCGTTAGTTGGCTCATTCCGAAGAGGTAGAACAGTTAAAGGGAAGAAGCATCCTCCCATCTGTAAAGAGGGTGATGTAATCAGAGAAGGGCAGGTGATAGGGTATTTGGATCAGTTTGGGGTTGGGGCCGGAATTCCCGTTAAGTCAGATGTGGCTGGAGAAGTGTTAAAGCTACTTGTTGAGGAGGGAGATCCTGTCGGTTTTGGAGATCCCATTCTTGCCGTCTTGCCATCATTCCATGACATTAAGTGA

Protein sequence

>Msa0369570

MDSSAAIRSFHYPIGTISHVRSSIERAAVVPCHKIRWNSNRGKKTLISCAKAVEAINTTKSDASLDSTQQDKLEKKPLQTATFPNGFEALILDVCDETEIAELRLKVGEFEMHLKRNIGATKAPLSNISPTTPPPIPSKPMDESAPATAQPLPPTSSSEKTNPFANVSSQKSSKLIALEASGTNTYALVGSFRRGRTVKGKKHPPICKEGDVIREGQVIGYLDQFGVGAGIPVKSDVAGEVLKLLVEEGDPVGFGDPILAVLPSFHDIK*