AlfalfaGEDB | Msa0855430

M. sativa cultivar zhongmu-4 / Msa0855430

KEGG: K05663
GO: GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006732 GO:0006777 GO:0006793 GO:0006796 GO:0006807 GO:0006873 GO:0006875 GO:0006879 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009507 GO:0009526 GO:0009536 GO:0009555 GO:0009657 GO:0009658 GO:0009889 GO:0009941 GO:0009987 GO:0010035 GO:0010038 GO:0010288 GO:0010380 GO:0016020 GO:0016043 GO:0018130 GO:0019222 GO:0019538 GO:0019637 GO:0019720 GO:0019725 GO:0019866 GO:0022622 GO:0030003 GO:0031090 GO:0031323 GO:0031326 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0042221 GO:0042592 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043545 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0046686 GO:0046916 GO:0048229 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050790 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051186 GO:0051188 GO:0051189 GO:0051193 GO:0051276 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0065009 GO:0071704 GO:0071840 GO:0090056 GO:0090407 GO:0098771 GO:0099402 GO:1901360 GO:1901362 GO:1901401 GO:1901463 GO:1901564 GO:1901566 GO:1901576
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0855430	XP_020238628.1	91.398	93	8	0	13	105	21	113	1.47e-55	178

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0855430	sp\|Q9LVM1\|AB25B_ARATH	76.667	90	21	0	14	103	638	727	1.98e-41	147

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0855430	A0A072UQS7	96.739	92	3	0	14	105	513	604	2.85e-54	187

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0855430	-0.810776	9.743513e-51	-8.615850e-47
Msa0011720	Msa0855430	0.827363	1.630657e-54	-8.615850e-47
Msa0030380	Msa0855430	0.800006	1.764564e-48	-8.615850e-47
Msa0032610	Msa0855430	0.802724	4.898239e-49	-8.615850e-47
Msa0039420	Msa0855430	-0.802075	6.663073e-49	-8.615850e-47
Msa0044710	Msa0855430	0.830905	2.257396e-55	-8.615850e-47
Msa0050760	Msa0855430	0.800242	1.579668e-48	-8.615850e-47
Msa0069310	Msa0855430	0.810858	9.352550e-51	-8.615850e-47
Msa0071240	Msa0855430	0.843297	1.527774e-58	-8.615850e-47
Msa0079250	Msa0855430	0.811100	8.289326e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0855430	MtrunA17_Chr5g0433051	96.739	92	3	0	14	105	625	716	2.27e-57	187
Msa0855430	MtrunA17_Chr5g0433071	91.304	92	8	0	14	105	627	718	3.41e-54	179
Msa0855430	MtrunA17_Chr1g0156821	51.250	80	39	0	14	93	533	612	6.78e-18	77.4
Msa0855430	MtrunA17_Chr1g0156821	48.649	74	37	1	14	86	1155	1228	2.96e-14	67.0
Msa0855430	MtrunA17_Chr8g0344651	46.067	89	43	2	3	86	1389	1477	2.64e-16	72.8
Msa0855430	MtrunA17_Chr8g0344651	47.945	73	38	0	14	86	759	831	5.50e-15	69.3
Msa0855430	MtrunA17_Chr5g0412741	43.000	100	50	2	3	95	602	701	2.31e-15	70.1
Msa0855430	MtrunA17_Chr3g0128391	47.436	78	41	0	14	91	476	553	4.92e-15	69.3
Msa0855430	MtrunA17_Chr2g0285301	43.678	87	48	1	11	96	522	608	7.68e-15	68.6
Msa0855430	MtrunA17_Chr2g0285301	45.455	77	41	1	11	86	1180	1256	2.92e-13	64.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0855430	AT5G58270.1	76.667	90	21	0	14	103	638	727	2.01e-42	147
Msa0855430	AT4G28620.1	70.732	82	24	0	14	95	598	679	6.89e-35	125
Msa0855430	AT4G28630.1	69.512	82	25	0	14	95	596	677	4.07e-34	124
Msa0855430	AT3G28380.1	51.899	79	36	1	14	90	1158	1236	1.78e-16	73.9
Msa0855430	AT3G28380.1	50.000	74	36	1	14	86	520	593	3.91e-13	64.3
Msa0855430	AT3G28390.1	53.521	71	33	0	14	84	1143	1213	1.48e-15	71.2
Msa0855430	AT3G28390.1	50.000	74	36	1	14	86	508	581	1.02e-13	65.9
Msa0855430	AT3G28345.1	43.137	102	56	2	4	104	511	611	2.01e-15	70.9
Msa0855430	AT3G28345.1	53.846	65	30	0	14	78	1158	1222	2.07e-14	67.8
Msa0855430	AT3G28860.1	47.945	73	38	0	14	86	526	598	2.15e-15	70.9

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Find 29 sgRNAs with CRISPR-Local

Find 140 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AATGGAAAGGTGGTTGAGCA+TGG	0.564000	5_4:-48712440	Msa0855430:CDS
AATTGATACAGCCATCAAAG+TGG	0.690779	5_4:-48712342	Msa0855430:CDS
AGGAAGATATGCACAGCTTT+GGG	0.333688	5_4:-48712390	Msa0855430:CDS
AGTCTAGCACTCAATATACA+AGG	0.598470	5_4:+48711963	None:intergenic
ATACAAAATCTTGCTGTCCA+CGG	0.587784	5_4:+48712055	None:intergenic
ATTGATACAGCCATCAAAGT+GGG	0.631411	5_4:-48712341	Msa0855430:CDS
CAATATTCAGATCATTGTTT+TGG	0.288251	5_4:-48712465	Msa0855430:intron
CACTGCAATGCAGTGTGATG+AGG	0.671303	5_4:-48712785	Msa0855430:intron
CAGGAAGATATGCACAGCTT+TGG	0.409037	5_4:-48712391	Msa0855430:CDS
CATAATTTATTGGTGTTCAA+AGG	0.474740	5_4:-48712117	Msa0855430:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCGGTATTCAAATTTGGATA+TGG	-	chr5_4:48712057-48712076	Msa0855430:three_prime_UTR	30.0%
CATATTCATACATGATTGAC+AGG	-	chr5_4:48712144-48712163	Msa0855430:three_prime_UTR	30.0%
ACTTCTTACATTTCCAGAAT+GGG	+	chr5_4:48712211-48712230	None:intergenic	30.0%
TAATGAAACAAGTGTCTGTA+TGG	+	chr5_4:48712305-48712324	None:intergenic	30.0%
TATTCCAGAACACATATTAC+TGG	-	chr5_4:48712602-48712621	Msa0855430:intron	30.0%
AAAACCAGTAATATGTGTTC+TGG	+	chr5_4:48712609-48712628	None:intergenic	30.0%
TCGGTATTCAAATTTGGATA+TGG	-	chr5_4:48712057-48712076	Msa0855430:three_prime_UTR	30.0%
CATATTCATACATGATTGAC+AGG	-	chr5_4:48712144-48712163	Msa0855430:three_prime_UTR	30.0%
ACTTCTTACATTTCCAGAAT+GGG	+	chr5_4:48712211-48712230	None:intergenic	30.0%
TAATGAAACAAGTGTCTGTA+TGG	+	chr5_4:48712305-48712324	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	48711906	48713376	48711906	ID=Msa0855430;Name=Msa0855430
chr5_4	mRNA	48711906	48713376	48711906	ID=Msa0855430-mRNA-1;Parent=Msa0855430;Name=Msa0855430-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0\|0.5\|0.33\|0.66\|1\|1\|3\|428\|105
chr5_4	exon	48711906	48712477	48711906	ID=Msa0855430-mRNA-1:exon:15392;Parent=Msa0855430-mRNA-1
chr5_4	exon	48712786	48712921	48712786	ID=Msa0855430-mRNA-1:exon:15391;Parent=Msa0855430-mRNA-1
chr5_4	exon	48713339	48713376	48713339	ID=Msa0855430-mRNA-1:exon:15390;Parent=Msa0855430-mRNA-1
chr5_4	CDS	48713339	48713376	48713339	ID=Msa0855430-mRNA-1:cds;Parent=Msa0855430-mRNA-1
chr5_4	CDS	48712786	48712921	48712786	ID=Msa0855430-mRNA-1:cds;Parent=Msa0855430-mRNA-1
chr5_4	CDS	48712334	48712477	48712334	ID=Msa0855430-mRNA-1:cds;Parent=Msa0855430-mRNA-1
chr5_4	three_prime_UTR	48711906	48712333	48711906	ID=Msa0855430-mRNA-1:three_prime_utr;Parent=Msa0855430-mRNA-1

Gene Sequence	>Msa0855430 ATGGACATTGCCATTGTGACTGCTAAGACACGGACTAGGTTGTGTGATGAAGCTACAAGTGCTCTTGACAGCACAACAGAAGCAGAGATTTTAAGTGCATTGAAGTCAATATCAACTAATCGAACTTCCATATTCATTGCTCACAGGCTCACCACTGCAATGCAGTGTGATGAGATCATTGTTTTGGTAAATGGAAAGGTGGTTGAGCATGGACCACATGAAGTGCTCTTAGCAAATGCAGGAAGATATGCACAGCTTTGGGGACAGCAAAATAACACTATTGATGCAATTGATACAGCCATCAAAGTGGGAGCATAA
Protein sequence	>Msa0855430 MDIAIVTAKTRTRLCDEATSALDSTTEAEILSALKSISTNRTSIFIAHRLTTAMQCDEIIVLVNGKVVEHGPHEVLLANAGRYAQLWGQQNNTIDAIDTAIKVGA*