AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1382580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1382580 MtrunA17_Chr1g0155291 91.723 592 34 2 1 591 1 578 0.0 1070
Msa1382580 MtrunA17_Chr1g0156141 98.519 135 2 0 330 464 1 135 1.54e-88 270
Msa1382580 MtrunA17_Chr3g0141661 39.759 249 76 12 371 585 55 263 1.96e-33 129
Msa1382580 MtrunA17_Chr7g0276061 36.283 113 64 4 437 543 246 356 2.78e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1382580 AT1G75260.1 30.820 305 171 10 314 589 218 511 6.72e-24 105

Find 130 sgRNAs with CRISPR-Local

Find 338 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCTTCAGCAGAAGAATT+TGG 0.192471 tig0020520:-50673 None:intergenic
AAAATCCCTTCTTGGCTATC+AGG 0.245435 tig0020520:+50277 Msa1382580:CDS
TCTACCTCGCAAGAAGAAAA+AGG 0.256159 tig0020520:+51003 Msa1382580:CDS
TTCAATGGGGACTTCATCTT+TGG 0.269120 tig0020520:-51066 Msa1382590:three_prime_UTR
GTCTTTATCGTCGTGGTTGA+TGG 0.275216 tig0020520:-51880 Msa1382590:three_prime_UTR
AATAATTCACTCATGTTTCA+TGG 0.298043 tig0020520:+51798 Msa1382580:CDS
TCTCTTTCTCTTTAGTTTGA+AGG 0.302700 tig0020520:-51206 Msa1382590:three_prime_UTR
GGACGACGAGACATTGATTC+AGG 0.324415 tig0020520:-50304 None:intergenic
AAGGGTCAATCCACATTCAT+AGG 0.332387 tig0020520:+51640 Msa1382580:CDS
CGCTCTAGGGCCGAAGGATA+TGG 0.340717 tig0020520:-50880 Msa1382590:three_prime_UTR
ATTTGGCTTTGGCACCTTCA+TGG 0.372180 tig0020520:-50656 None:intergenic
ATCTTTGGTTCTGCTTCACT+TGG 0.374825 tig0020520:-51051 Msa1382590:three_prime_UTR
CAGCCAACAGTTCGCCGTTA+TGG 0.376958 tig0020520:+51957 Msa1382580:CDS
GATAATGGTGTTGGCTTAGT+TGG 0.377781 tig0020520:-50484 None:intergenic
TGTAGCGGCTTCTTGAGTTT+TGG 0.384330 tig0020520:-50431 None:intergenic
ACAAACACTGACGATGATAA+TGG 0.389981 tig0020520:-50499 None:intergenic
CTCTTCGGACTCAGTCTTGT+AGG 0.397966 tig0020520:-51664 Msa1382590:three_prime_UTR
TTTGTGTCTGAACGTGTAAT+TGG 0.401935 tig0020520:-50343 None:intergenic
GGTTCTGCTTCACTTGGAAC+CGG 0.405060 tig0020520:-51045 Msa1382590:three_prime_UTR
ACATGGTTTGGCGATGTTGA+TGG 0.413588 tig0020520:-50550 None:intergenic
GGAAAGGCACCAATGCAAAA+AGG 0.413609 tig0020520:+51465 Msa1382580:CDS
TCAGCAGAAGAATTTGGCTT+TGG 0.419185 tig0020520:-50667 None:intergenic
TGTGCCTGAAGAAGATGCTT+TGG 0.420059 tig0020520:-51304 Msa1382590:three_prime_UTR
ATCATCTCATGCAGCATCTC+AGG 0.426612 tig0020520:+50588 Msa1382580:CDS
CATGCCAAAGCATCTTCTTC+AGG 0.430172 tig0020520:+51300 Msa1382580:CDS
ATCTCCTTGGACCTGGACCC+CGG 0.433688 tig0020520:+50924 Msa1382580:CDS
GTGTGCTTAGAAAGATTCTC+TGG 0.434313 tig0020520:-51108 Msa1382590:three_prime_UTR
AAGGGAAAAGGAAAATGAAA+AGG 0.436087 tig0020520:+51443 Msa1382580:CDS
TGAGTTTCCAAAGGGGACTT+TGG 0.437954 tig0020520:-51174 Msa1382590:three_prime_UTR
GCATCATCTACCATCTCCTT+TGG 0.454093 tig0020520:+50786 Msa1382580:CDS
GTTATGAGAGAGGGCCTAGA+TGG 0.455776 tig0020520:-50382 None:intergenic
TAGTTGGGTGAGGCGGTGAA+TGG 0.458825 tig0020520:-50468 None:intergenic
GGGGTCCAGGTCCAAGGAGA+TGG 0.458939 tig0020520:-50922 Msa1382590:three_prime_UTR
AATAACACCAAAGTCCCCTT+TGG 0.463540 tig0020520:+51167 Msa1382580:CDS
CATAACGGCGAACTGTTGGC+TGG 0.467257 tig0020520:-51956 Msa1382590:three_prime_UTR
GCATCATCCACCGTCGACTT+TGG 0.467942 tig0020520:+50744 Msa1382580:CDS
CTTTGGCATGTTGATTCGGT+TGG 0.469572 tig0020520:-51287 Msa1382590:three_prime_UTR
GGGCCTAGATGGTCTTTGAA+TGG 0.471208 tig0020520:-50371 None:intergenic
GGTGGAGAGTTGACATGGTT+TGG 0.472367 tig0020520:-50562 None:intergenic
ATAATGGTGTTGGCTTAGTT+GGG 0.473846 tig0020520:-50483 None:intergenic
TCGTGGTTGATGGTTTCTAC+AGG 0.474450 tig0020520:-51870 Msa1382590:three_prime_UTR
TTTCCCTTTCCTCGCTCGAT+GGG 0.476396 tig0020520:-51428 Msa1382590:three_prime_UTR
CGCTCTAGGGCCGAAGGAGA+TGG 0.477305 tig0020520:-50838 Msa1382590:three_prime_UTR
TGTCACATCAATGCTCTCTT+CGG 0.477554 tig0020520:-51679 Msa1382590:three_prime_UTR
GATGCTTTGGCATGTTGATT+CGG 0.479473 tig0020520:-51291 Msa1382590:three_prime_UTR
CAATGGAACATGGTGAGGTC+GGG 0.480101 tig0020520:+51742 Msa1382580:CDS
AGCATCGTCCACCATCTCCT+TGG 0.484267 tig0020520:+50911 Msa1382580:CDS
TGCTCTGGGGCCAAAGTCGA+CGG 0.489813 tig0020520:-50754 None:intergenic
GGTGGATGATGCTGAGAAGC+TGG 0.491016 tig0020520:-50733 None:intergenic
TGTCCCATCGAGCGAGGAAA+GGG 0.494803 tig0020520:+51425 Msa1382580:CDS
TCTGAATCAGATAAGAAAGA+AGG 0.496204 tig0020520:+51621 Msa1382580:CDS
TGAGGTTGAGTTGAGACAAC+AGG 0.500660 tig0020520:-50613 None:intergenic
ATCGAGCGAGGAAAGGGAAA+AGG 0.501898 tig0020520:+51431 Msa1382580:CDS
GGCCTAGATGGTCTTTGAAT+GGG 0.503318 tig0020520:-50370 None:intergenic
AGTGCAACCAACACAACCTA+TGG 0.506396 tig0020520:+51533 Msa1382580:CDS
CGCTCTATATCCAAAGGAGA+TGG 0.507278 tig0020520:-50796 None:intergenic
TGCTCCGGGGTCCAGGTCCA+AGG 0.507731 tig0020520:-50928 Msa1382590:three_prime_UTR
TTAGAAACTCGGGGTGATGT+AGG 0.508330 tig0020520:-50703 None:intergenic
GGAAGTGTAACTTGAACTCC+AGG 0.513147 tig0020520:-51840 Msa1382590:three_prime_UTR
GGACTAGGAGAAAATTCTGC+AGG 0.513377 tig0020520:-50406 None:intergenic
AGATTCTCTGGTTGTGACAC+GGG 0.514523 tig0020520:-51096 Msa1382590:three_prime_UTR
GAAGATGTCAATGTCTGATC+CGG 0.516487 tig0020520:+51026 Msa1382580:CDS
GGAACATGGTGAGGTCGGGC+AGG 0.517884 tig0020520:+51746 Msa1382580:CDS
AGGGAAAAGGAAAATGAAAA+GGG 0.518930 tig0020520:+51444 Msa1382580:CDS
TTGTCCTCCATAGGTTGTGT+TGG 0.520819 tig0020520:-51540 Msa1382590:three_prime_UTR
ACTTCCTTTGAGTTTCCAAA+GGG 0.524701 tig0020520:-51182 Msa1382590:three_prime_UTR
GCATTATCCACCATCTCCTT+CGG 0.525548 tig0020520:+50828 Msa1382580:CDS
GCATCATCCACCATATCCTT+CGG 0.526033 tig0020520:+50870 Msa1382580:CDS
TGATGGCTTTCTTTGTGCCA+TGG 0.529229 tig0020520:-50245 None:intergenic
AGCATTGATGTGACAACAGA+TGG 0.531129 tig0020520:+51687 Msa1382580:CDS
GGTGTTGGCTTAGTTGGGTG+AGG 0.539545 tig0020520:-50478 None:intergenic
GTCCACCATCTCCTTGGACC+TGG 0.539700 tig0020520:+50917 Msa1382580:CDS
TCAATGGAACATGGTGAGGT+CGG 0.539979 tig0020520:+51741 Msa1382580:CDS
TTCAGTGTCATAACACTGAC+TGG 0.540460 tig0020520:+51567 Msa1382580:CDS
GGCGATGTTGATGGAGAAGG+TGG 0.541251 tig0020520:-50541 None:intergenic
GGTGTTCCTGATAGCCAAGA+AGG 0.547165 tig0020520:-50283 None:intergenic
TCAATCAATGAAAGAGACCC+TGG 0.549089 tig0020520:+51822 Msa1382580:CDS
TGAGATGCTGCATGAGATGA+TGG 0.549906 tig0020520:-50586 None:intergenic
CGACCATAACGGCGAACTGT+TGG 0.551046 tig0020520:-51960 Msa1382590:three_prime_UTR
CAATGAGGAAGAAGACTCAA+TGG 0.551065 tig0020520:+51725 Msa1382580:CDS
AACTTCCTTTGAGTTTCCAA+AGG 0.552524 tig0020520:-51183 Msa1382590:three_prime_UTR
GGACTGAGTTTAACATTAGT+CGG 0.558841 tig0020520:+51916 Msa1382580:CDS
GTCCAGGTCCAAGGAGATGG+TGG 0.560062 tig0020520:-50919 Msa1382590:three_prime_UTR
TTGTCCCATCGAGCGAGGAA+AGG 0.563695 tig0020520:+51424 Msa1382580:CDS
TTCCCATTCAAAGACCATCT+AGG 0.566568 tig0020520:+50368 Msa1382580:CDS
TATGGTCGCAAGTTCAGTTG+TGG 0.571661 tig0020520:+51975 Msa1382580:CDS
AAAGGAAAATGAAAAGGGAA+AGG 0.572297 tig0020520:+51449 Msa1382580:CDS
CTGAATCAGATAAGAAAGAA+GGG 0.574236 tig0020520:+51622 Msa1382580:CDS
TTTCCACATCAAACTCTAGT+GGG 0.574624 tig0020520:+51379 Msa1382580:CDS
AACTGAACTTGCGACCATAA+CGG 0.579458 tig0020520:-51971 Msa1382590:three_prime_UTR
AGGGTCAATCCACATTCATA+GGG 0.580060 tig0020520:+51641 Msa1382580:CDS
CTCTCATCATGACACCATGA+AGG 0.582906 tig0020520:+50642 Msa1382580:CDS
AAGATTCTCTGGTTGTGACA+CGG 0.584236 tig0020520:-51097 Msa1382590:three_prime_UTR
TCTTGTAGGCCCTATGAATG+TGG 0.587297 tig0020520:-51650 Msa1382590:three_prime_UTR
TTTCCCACTAGAGTTTGATG+TGG 0.593804 tig0020520:-51382 Msa1382590:three_prime_UTR
TTTGGCGATGTTGATGGAGA+AGG 0.595989 tig0020520:-50544 None:intergenic
AAGAATTGTCCCATCGAGCG+AGG 0.597091 tig0020520:+51419 Msa1382580:CDS
TTCTGCAGGGGTTATGAGAG+AGG 0.599326 tig0020520:-50392 None:intergenic
TTCATGGTGTCATGATGAGA+GGG 0.599426 tig0020520:-50640 None:intergenic
CTTCATGGTGTCATGATGAG+AGG 0.599937 tig0020520:-50641 None:intergenic
AGCATCTTCTTCAGGCACAA+AGG 0.605435 tig0020520:+51308 Msa1382580:CDS
ATAAAGACACTCACAATCGC+AGG 0.606983 tig0020520:+51895 Msa1382580:CDS
ACAAAGGATAAGAAGCATCA+TGG 0.606998 tig0020520:+51324 Msa1382580:CDS
ATGGTGGTGGAGAGTTGACA+TGG 0.608320 tig0020520:-50567 None:intergenic
GACTAGGAGAAAATTCTGCA+GGG 0.610417 tig0020520:-50405 None:intergenic
GTTGGCTTAGTTGGGTGAGG+CGG 0.613775 tig0020520:-50475 None:intergenic
GATTCTCTGGTTGTGACACG+GGG 0.616837 tig0020520:-51095 Msa1382590:three_prime_UTR
AGTCCCCTTTGGAAACTCAA+AGG 0.618613 tig0020520:+51178 Msa1382580:CDS
ACACTGACTGGTGACAATAG+AGG 0.621058 tig0020520:+51579 Msa1382580:CDS
GCTGCATGAGATGATGGTGG+TGG 0.628158 tig0020520:-50580 None:intergenic
AGAGGAGCAACAATGCATGT+TGG 0.629716 tig0020520:+51597 Msa1382580:CDS
GCAACCAACACAACCTATGG+AGG 0.633233 tig0020520:+51536 Msa1382580:CDS
GTGTTCCTGATAGCCAAGAA+GGG 0.637553 tig0020520:-50282 None:intergenic
ACTGACGATGATAATGGTGT+TGG 0.638275 tig0020520:-50493 None:intergenic
TCTGCAGGGGTTATGAGAGA+GGG 0.638447 tig0020520:-50391 None:intergenic
CTAACCATGAAGAAAACACT+CGG 0.642497 tig0020520:+50971 Msa1382580:CDS
AGACTCAATGGAACATGGTG+AGG 0.644780 tig0020520:+51737 Msa1382580:CDS
GAAGAAGACTCAATGGAACA+TGG 0.649274 tig0020520:+51732 Msa1382580:CDS
TCTAGGGCCGAAGGAGATGG+TGG 0.656152 tig0020520:-50835 Msa1382590:three_prime_UTR
TCTAGGGCCGAAGGATATGG+TGG 0.657238 tig0020520:-50877 Msa1382590:three_prime_UTR
TCTGGGGCCAAAGTCGACGG+TGG 0.660567 tig0020520:-50751 None:intergenic
TGTGAGTGTCTTTATCGTCG+TGG 0.661271 tig0020520:-51887 Msa1382590:three_prime_UTR
GATGTGACAACAGATGGAGA+AGG 0.661909 tig0020520:+51693 Msa1382580:CDS
ACTAGGAGAAAATTCTGCAG+GGG 0.680257 tig0020520:-50404 None:intergenic
CTTCCTTTGAGTTTCCAAAG+GGG 0.694307 tig0020520:-51181 Msa1382590:three_prime_UTR
AGAAGGAAACACTAACAATG+AGG 0.700109 tig0020520:+51710 Msa1382580:CDS
TCATGATGAGAGGGAGACTG+AGG 0.703551 tig0020520:-50631 None:intergenic
GATGCTGCATGAGATGATGG+TGG 0.727541 tig0020520:-50583 None:intergenic
AGGTTGTGTTGGTTGCACTG+AGG 0.746719 tig0020520:-51529 Msa1382590:three_prime_UTR
GAAGTGTAACTTGAACTCCA+GGG 0.753989 tig0020520:-51839 Msa1382590:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTGTTTCTTACTTTTT+TGG - tig0020520:51247-51266 Msa1382590:three_prime_UTR 20.0%
!!! TTTTGTGTTTCTTACTTTTT+TGG - tig0020520:51247-51266 Msa1382590:three_prime_UTR 20.0%
! CACAAAAACAAAATTAGATG+AGG + tig0020520:51128-51147 Msa1382580:CDS 25.0%
! AATAATTCACTCATGTTTCA+TGG + tig0020520:51798-51817 Msa1382580:CDS 25.0%
! CACAAAAACAAAATTAGATG+AGG + tig0020520:51128-51147 Msa1382580:CDS 25.0%
! AATAATTCACTCATGTTTCA+TGG + tig0020520:51798-51817 Msa1382580:CDS 25.0%
!!! GGGATTTTAAAACGAAATGA+TGG - tig0020520:50265-50284 None:intergenic 30.0%
!!! TTCGTTTTAAAATCCCTTCT+TGG + tig0020520:50269-50288 Msa1382580:CDS 30.0%
!!! TTTTTTCGCTCTATATCCAA+AGG - tig0020520:50805-50824 None:intergenic 30.0%
! GCAAAAAAATGAGGTGTTAA+AGG + tig0020520:50948-50967 Msa1382580:CDS 30.0%
!! TCTCTTTCTCTTTAGTTTGA+AGG - tig0020520:51209-51228 Msa1382590:three_prime_UTR 30.0%
AAGGGAAAAGGAAAATGAAA+AGG + tig0020520:51443-51462 Msa1382580:CDS 30.0%
AGGGAAAAGGAAAATGAAAA+GGG + tig0020520:51444-51463 Msa1382580:CDS 30.0%
AAAGGAAAATGAAAAGGGAA+AGG + tig0020520:51449-51468 Msa1382580:CDS 30.0%
! TCTTTGATACCTTTTTGCAT+TGG - tig0020520:51477-51496 Msa1382590:three_prime_UTR 30.0%
TCTGAATCAGATAAGAAAGA+AGG + tig0020520:51621-51640 Msa1382580:CDS 30.0%
CTGAATCAGATAAGAAAGAA+GGG + tig0020520:51622-51641 Msa1382580:CDS 30.0%
!!! GGGATTTTAAAACGAAATGA+TGG - tig0020520:50265-50284 None:intergenic 30.0%
!!! TTCGTTTTAAAATCCCTTCT+TGG + tig0020520:50269-50288 Msa1382580:CDS 30.0%
!!! TTTTTTCGCTCTATATCCAA+AGG - tig0020520:50805-50824 None:intergenic 30.0%
! GCAAAAAAATGAGGTGTTAA+AGG + tig0020520:50948-50967 Msa1382580:CDS 30.0%
!! TCTCTTTCTCTTTAGTTTGA+AGG - tig0020520:51209-51228 Msa1382590:three_prime_UTR 30.0%
AAGGGAAAAGGAAAATGAAA+AGG + tig0020520:51443-51462 Msa1382580:CDS 30.0%
AGGGAAAAGGAAAATGAAAA+GGG + tig0020520:51444-51463 Msa1382580:CDS 30.0%
AAAGGAAAATGAAAAGGGAA+AGG + tig0020520:51449-51468 Msa1382580:CDS 30.0%
! TCTTTGATACCTTTTTGCAT+TGG - tig0020520:51477-51496 Msa1382590:three_prime_UTR 30.0%
TCTGAATCAGATAAGAAAGA+AGG + tig0020520:51621-51640 Msa1382580:CDS 30.0%
CTGAATCAGATAAGAAAGAA+GGG + tig0020520:51622-51641 Msa1382580:CDS 30.0%
!!! ATTGGTTTTGATGCGTCTTT+CGG - tig0020520:50328-50347 None:intergenic 35.0%
TTTGTGTCTGAACGTGTAAT+TGG - tig0020520:50346-50365 None:intergenic 35.0%
!!! GTTTTGAGGTTCAATTGTAG+CGG - tig0020520:50449-50468 None:intergenic 35.0%
!! ATAATGGTGTTGGCTTAGTT+GGG - tig0020520:50486-50505 None:intergenic 35.0%
ACAAACACTGACGATGATAA+TGG - tig0020520:50502-50521 None:intergenic 35.0%
CTTTCTTCAGCAGAAGAATT+TGG - tig0020520:50676-50695 None:intergenic 35.0%
!! TGGCTCAATTTTAGAAACTC+GGG - tig0020520:50716-50735 None:intergenic 35.0%
!! CTGGCTCAATTTTAGAAACT+CGG - tig0020520:50717-50736 None:intergenic 35.0%
!!! ATGCTCATTTTTTTGCTCTG+GGG - tig0020520:50770-50789 None:intergenic 35.0%
!!! GATGCTCATTTTTTTGCTCT+GGG - tig0020520:50771-50790 None:intergenic 35.0%
!!! TGATGCTCATTTTTTTGCTC+TGG - tig0020520:50772-50791 None:intergenic 35.0%
!!! ATGCTCATTTTTTCGCTCTA+GGG - tig0020520:50812-50831 Msa1382590:three_prime_UTR 35.0%
!!! ATGCTCATTTTTTCGCTCTA+GGG - tig0020520:50812-50831 Msa1382590:three_prime_UTR 35.0%
!!! AACACCTCATTTTTTTGCTC+CGG - tig0020520:50946-50965 Msa1382590:three_prime_UTR 35.0%
CTAACCATGAAGAAAACACT+CGG + tig0020520:50971-50990 Msa1382580:CDS 35.0%
! ACTTCCTTTGAGTTTCCAAA+GGG - tig0020520:51185-51204 Msa1382590:three_prime_UTR 35.0%
! AACTTCCTTTGAGTTTCCAA+AGG - tig0020520:51186-51205 Msa1382590:three_prime_UTR 35.0%
!! ACAAAGGATAAGAAGCATCA+TGG + tig0020520:51324-51343 Msa1382580:CDS 35.0%
! TTTTCCACATCAAACTCTAG+TGG + tig0020520:51378-51397 Msa1382580:CDS 35.0%
TTTCCACATCAAACTCTAGT+GGG + tig0020520:51379-51398 Msa1382580:CDS 35.0%
!!! CTGAATTTTTTGTCCTCCAT+AGG - tig0020520:51552-51571 Msa1382590:three_prime_UTR 35.0%
AGAAGGAAACACTAACAATG+AGG + tig0020520:51710-51729 Msa1382580:CDS 35.0%
GGACTGAGTTTAACATTAGT+CGG + tig0020520:51916-51935 Msa1382580:CDS 35.0%
!!! ATTGGTTTTGATGCGTCTTT+CGG - tig0020520:50328-50347 None:intergenic 35.0%
TTTGTGTCTGAACGTGTAAT+TGG - tig0020520:50346-50365 None:intergenic 35.0%
!!! GTTTTGAGGTTCAATTGTAG+CGG - tig0020520:50449-50468 None:intergenic 35.0%
!! ATAATGGTGTTGGCTTAGTT+GGG - tig0020520:50486-50505 None:intergenic 35.0%
ACAAACACTGACGATGATAA+TGG - tig0020520:50502-50521 None:intergenic 35.0%
CTTTCTTCAGCAGAAGAATT+TGG - tig0020520:50676-50695 None:intergenic 35.0%
!! TGGCTCAATTTTAGAAACTC+GGG - tig0020520:50716-50735 None:intergenic 35.0%
!! CTGGCTCAATTTTAGAAACT+CGG - tig0020520:50717-50736 None:intergenic 35.0%
!!! ATGCTCATTTTTTTGCTCTG+GGG - tig0020520:50770-50789 None:intergenic 35.0%
!!! GATGCTCATTTTTTTGCTCT+GGG - tig0020520:50771-50790 None:intergenic 35.0%
!!! TGATGCTCATTTTTTTGCTC+TGG - tig0020520:50772-50791 None:intergenic 35.0%
!!! ATGCTCATTTTTTCGCTCTA+GGG - tig0020520:50812-50831 Msa1382590:three_prime_UTR 35.0%
!!! ATGCTCATTTTTTCGCTCTA+GGG - tig0020520:50812-50831 Msa1382590:three_prime_UTR 35.0%
!!! AACACCTCATTTTTTTGCTC+CGG - tig0020520:50946-50965 Msa1382590:three_prime_UTR 35.0%
CTAACCATGAAGAAAACACT+CGG + tig0020520:50971-50990 Msa1382580:CDS 35.0%
! ACTTCCTTTGAGTTTCCAAA+GGG - tig0020520:51185-51204 Msa1382590:three_prime_UTR 35.0%
! AACTTCCTTTGAGTTTCCAA+AGG - tig0020520:51186-51205 Msa1382590:three_prime_UTR 35.0%
!! ACAAAGGATAAGAAGCATCA+TGG + tig0020520:51324-51343 Msa1382580:CDS 35.0%
! TTTTCCACATCAAACTCTAG+TGG + tig0020520:51378-51397 Msa1382580:CDS 35.0%
TTTCCACATCAAACTCTAGT+GGG + tig0020520:51379-51398 Msa1382580:CDS 35.0%
!!! CTGAATTTTTTGTCCTCCAT+AGG - tig0020520:51552-51571 Msa1382590:three_prime_UTR 35.0%
AGAAGGAAACACTAACAATG+AGG + tig0020520:51710-51729 Msa1382580:CDS 35.0%
GGACTGAGTTTAACATTAGT+CGG + tig0020520:51916-51935 Msa1382580:CDS 35.0%
AAAATCCCTTCTTGGCTATC+AGG + tig0020520:50277-50296 Msa1382580:CDS 40.0%
TTCCCATTCAAAGACCATCT+AGG + tig0020520:50368-50387 Msa1382580:CDS 40.0%
ACTAGGAGAAAATTCTGCAG+GGG - tig0020520:50407-50426 None:intergenic 40.0%
GACTAGGAGAAAATTCTGCA+GGG - tig0020520:50408-50427 None:intergenic 40.0%
!! TCTTGAGTTTTGGTAGGACT+AGG - tig0020520:50424-50443 None:intergenic 40.0%
!! GATAATGGTGTTGGCTTAGT+TGG - tig0020520:50487-50506 None:intergenic 40.0%
!! ACTGACGATGATAATGGTGT+TGG - tig0020520:50496-50515 None:intergenic 40.0%
!! TTCATGGTGTCATGATGAGA+GGG - tig0020520:50643-50662 None:intergenic 40.0%
! TCAGCAGAAGAATTTGGCTT+TGG - tig0020520:50670-50689 None:intergenic 40.0%
!! GGCTCAATTTTAGAAACTCG+GGG - tig0020520:50715-50734 None:intergenic 40.0%
!!! GATGCTCATTTTTTCGCTCT+AGG - tig0020520:50855-50874 Msa1382590:three_prime_UTR 40.0%
!!! GATGCTCATTTTTTCGCTCT+AGG - tig0020520:50855-50874 Msa1382590:three_prime_UTR 40.0%
!!! ACACCTCATTTTTTTGCTCC+GGG - tig0020520:50945-50964 Msa1382590:three_prime_UTR 40.0%
! TATGCCGAGTGTTTTCTTCA+TGG - tig0020520:50978-50997 Msa1382590:three_prime_UTR 40.0%
TCTACCTCGCAAGAAGAAAA+AGG + tig0020520:51003-51022 Msa1382580:CDS 40.0%
CTACCTCGCAAGAAGAAAAA+GGG + tig0020520:51004-51023 Msa1382580:CDS 40.0%
GAAGATGTCAATGTCTGATC+CGG + tig0020520:51026-51045 Msa1382580:CDS 40.0%
!! ATCTTTGGTTCTGCTTCACT+TGG - tig0020520:51054-51073 Msa1382590:three_prime_UTR 40.0%
TTCAATGGGGACTTCATCTT+TGG - tig0020520:51069-51088 Msa1382590:three_prime_UTR 40.0%
! ACACGGGGATGATTTTCAAT+GGG - tig0020520:51083-51102 Msa1382590:three_prime_UTR 40.0%
AAGATTCTCTGGTTGTGACA+CGG - tig0020520:51100-51119 Msa1382590:three_prime_UTR 40.0%
GTGTGCTTAGAAAGATTCTC+TGG - tig0020520:51111-51130 Msa1382590:three_prime_UTR 40.0%
AATAACACCAAAGTCCCCTT+TGG + tig0020520:51167-51186 Msa1382580:CDS 40.0%
! CTTCCTTTGAGTTTCCAAAG+GGG - tig0020520:51184-51203 Msa1382590:three_prime_UTR 40.0%
! GATGCTTTGGCATGTTGATT+CGG - tig0020520:51294-51313 Msa1382590:three_prime_UTR 40.0%
TTTCCCACTAGAGTTTGATG+TGG - tig0020520:51385-51404 Msa1382590:three_prime_UTR 40.0%
TTCAGTGTCATAACACTGAC+TGG + tig0020520:51567-51586 Msa1382580:CDS 40.0%
AAGGGTCAATCCACATTCAT+AGG + tig0020520:51640-51659 Msa1382580:CDS 40.0%
AGGGTCAATCCACATTCATA+GGG + tig0020520:51641-51660 Msa1382580:CDS 40.0%
TGTCACATCAATGCTCTCTT+CGG - tig0020520:51682-51701 Msa1382590:three_prime_UTR 40.0%
!! AGCATTGATGTGACAACAGA+TGG + tig0020520:51687-51706 Msa1382580:CDS 40.0%
CAATGAGGAAGAAGACTCAA+TGG + tig0020520:51725-51744 Msa1382580:CDS 40.0%
GAAGAAGACTCAATGGAACA+TGG + tig0020520:51732-51751 Msa1382580:CDS 40.0%
TCAATCAATGAAAGAGACCC+TGG + tig0020520:51822-51841 Msa1382580:CDS 40.0%
GAAGTGTAACTTGAACTCCA+GGG - tig0020520:51842-51861 Msa1382590:three_prime_UTR 40.0%
! ATGGTTTCTACAGGCTTTTG+TGG - tig0020520:51864-51883 Msa1382590:three_prime_UTR 40.0%
ATAAAGACACTCACAATCGC+AGG + tig0020520:51895-51914 Msa1382580:CDS 40.0%
AACTGAACTTGCGACCATAA+CGG - tig0020520:51974-51993 Msa1382590:three_prime_UTR 40.0%
AAAATCCCTTCTTGGCTATC+AGG + tig0020520:50277-50296 Msa1382580:CDS 40.0%
TTCCCATTCAAAGACCATCT+AGG + tig0020520:50368-50387 Msa1382580:CDS 40.0%
ACTAGGAGAAAATTCTGCAG+GGG - tig0020520:50407-50426 None:intergenic 40.0%
GACTAGGAGAAAATTCTGCA+GGG - tig0020520:50408-50427 None:intergenic 40.0%
!! TCTTGAGTTTTGGTAGGACT+AGG - tig0020520:50424-50443 None:intergenic 40.0%
!! GATAATGGTGTTGGCTTAGT+TGG - tig0020520:50487-50506 None:intergenic 40.0%
!! ACTGACGATGATAATGGTGT+TGG - tig0020520:50496-50515 None:intergenic 40.0%
!! TTCATGGTGTCATGATGAGA+GGG - tig0020520:50643-50662 None:intergenic 40.0%
! TCAGCAGAAGAATTTGGCTT+TGG - tig0020520:50670-50689 None:intergenic 40.0%
!! GGCTCAATTTTAGAAACTCG+GGG - tig0020520:50715-50734 None:intergenic 40.0%
!!! GATGCTCATTTTTTCGCTCT+AGG - tig0020520:50855-50874 Msa1382590:three_prime_UTR 40.0%
!!! GATGCTCATTTTTTCGCTCT+AGG - tig0020520:50855-50874 Msa1382590:three_prime_UTR 40.0%
!!! ACACCTCATTTTTTTGCTCC+GGG - tig0020520:50945-50964 Msa1382590:three_prime_UTR 40.0%
! TATGCCGAGTGTTTTCTTCA+TGG - tig0020520:50978-50997 Msa1382590:three_prime_UTR 40.0%
TCTACCTCGCAAGAAGAAAA+AGG + tig0020520:51003-51022 Msa1382580:CDS 40.0%
CTACCTCGCAAGAAGAAAAA+GGG + tig0020520:51004-51023 Msa1382580:CDS 40.0%
GAAGATGTCAATGTCTGATC+CGG + tig0020520:51026-51045 Msa1382580:CDS 40.0%
!! ATCTTTGGTTCTGCTTCACT+TGG - tig0020520:51054-51073 Msa1382590:three_prime_UTR 40.0%
TTCAATGGGGACTTCATCTT+TGG - tig0020520:51069-51088 Msa1382590:three_prime_UTR 40.0%
! ACACGGGGATGATTTTCAAT+GGG - tig0020520:51083-51102 Msa1382590:three_prime_UTR 40.0%
AAGATTCTCTGGTTGTGACA+CGG - tig0020520:51100-51119 Msa1382590:three_prime_UTR 40.0%
GTGTGCTTAGAAAGATTCTC+TGG - tig0020520:51111-51130 Msa1382590:three_prime_UTR 40.0%
AATAACACCAAAGTCCCCTT+TGG + tig0020520:51167-51186 Msa1382580:CDS 40.0%
! CTTCCTTTGAGTTTCCAAAG+GGG - tig0020520:51184-51203 Msa1382590:three_prime_UTR 40.0%
! GATGCTTTGGCATGTTGATT+CGG - tig0020520:51294-51313 Msa1382590:three_prime_UTR 40.0%
TTTCCCACTAGAGTTTGATG+TGG - tig0020520:51385-51404 Msa1382590:three_prime_UTR 40.0%
TTCAGTGTCATAACACTGAC+TGG + tig0020520:51567-51586 Msa1382580:CDS 40.0%
AAGGGTCAATCCACATTCAT+AGG + tig0020520:51640-51659 Msa1382580:CDS 40.0%
AGGGTCAATCCACATTCATA+GGG + tig0020520:51641-51660 Msa1382580:CDS 40.0%
TGTCACATCAATGCTCTCTT+CGG - tig0020520:51682-51701 Msa1382590:three_prime_UTR 40.0%
!! AGCATTGATGTGACAACAGA+TGG + tig0020520:51687-51706 Msa1382580:CDS 40.0%
CAATGAGGAAGAAGACTCAA+TGG + tig0020520:51725-51744 Msa1382580:CDS 40.0%
GAAGAAGACTCAATGGAACA+TGG + tig0020520:51732-51751 Msa1382580:CDS 40.0%
TCAATCAATGAAAGAGACCC+TGG + tig0020520:51822-51841 Msa1382580:CDS 40.0%
GAAGTGTAACTTGAACTCCA+GGG - tig0020520:51842-51861 Msa1382590:three_prime_UTR 40.0%
! ATGGTTTCTACAGGCTTTTG+TGG - tig0020520:51864-51883 Msa1382590:three_prime_UTR 40.0%
ATAAAGACACTCACAATCGC+AGG + tig0020520:51895-51914 Msa1382580:CDS 40.0%
AACTGAACTTGCGACCATAA+CGG - tig0020520:51974-51993 Msa1382590:three_prime_UTR 40.0%
GTGTTCCTGATAGCCAAGAA+GGG - tig0020520:50285-50304 None:intergenic 45.0%
GGCCTAGATGGTCTTTGAAT+GGG - tig0020520:50373-50392 None:intergenic 45.0%
GGACTAGGAGAAAATTCTGC+AGG - tig0020520:50409-50428 None:intergenic 45.0%
! TGTAGCGGCTTCTTGAGTTT+TGG - tig0020520:50434-50453 None:intergenic 45.0%
!!! AGAAGGTGGTTTTGAGTGAG+TGG - tig0020520:50530-50549 None:intergenic 45.0%
! TTTGGCGATGTTGATGGAGA+AGG - tig0020520:50547-50566 None:intergenic 45.0%
! ACATGGTTTGGCGATGTTGA+TGG - tig0020520:50553-50572 None:intergenic 45.0%
TGAGATGCTGCATGAGATGA+TGG - tig0020520:50589-50608 None:intergenic 45.0%
ATCATCTCATGCAGCATCTC+AGG + tig0020520:50588-50607 Msa1382580:CDS 45.0%
!! TGAGGTTGAGTTGAGACAAC+AGG - tig0020520:50616-50635 None:intergenic 45.0%
!! CTTCATGGTGTCATGATGAG+AGG - tig0020520:50644-50663 None:intergenic 45.0%
CTCTCATCATGACACCATGA+AGG + tig0020520:50642-50661 Msa1382580:CDS 45.0%
!! ATTTGGCTTTGGCACCTTCA+TGG - tig0020520:50659-50678 None:intergenic 45.0%
TTAGAAACTCGGGGTGATGT+AGG - tig0020520:50706-50725 None:intergenic 45.0%
GCATCATCTACCATCTCCTT+TGG + tig0020520:50786-50805 Msa1382580:CDS 45.0%
CGCTCTATATCCAAAGGAGA+TGG - tig0020520:50799-50818 None:intergenic 45.0%
GCATTATCCACCATCTCCTT+CGG + tig0020520:50828-50847 Msa1382580:CDS 45.0%
GCATCATCCACCATATCCTT+CGG + tig0020520:50870-50889 Msa1382580:CDS 45.0%
!!! CACCTCATTTTTTTGCTCCG+GGG - tig0020520:50944-50963 Msa1382590:three_prime_UTR 45.0%
! CTTCCCTTTTTCTTCTTGCG+AGG - tig0020520:51010-51029 Msa1382590:three_prime_UTR 45.0%
! CACGGGGATGATTTTCAATG+GGG - tig0020520:51082-51101 Msa1382590:three_prime_UTR 45.0%
! GACACGGGGATGATTTTCAA+TGG - tig0020520:51084-51103 Msa1382590:three_prime_UTR 45.0%
AGATTCTCTGGTTGTGACAC+GGG - tig0020520:51099-51118 Msa1382590:three_prime_UTR 45.0%
TGAGTTTCCAAAGGGGACTT+TGG - tig0020520:51177-51196 Msa1382590:three_prime_UTR 45.0%
! AGTCCCCTTTGGAAACTCAA+AGG + tig0020520:51178-51197 Msa1382580:CDS 45.0%
!! CTTTGGCATGTTGATTCGGT+TGG - tig0020520:51290-51309 Msa1382590:three_prime_UTR 45.0%
! CATGCCAAAGCATCTTCTTC+AGG + tig0020520:51300-51319 Msa1382580:CDS 45.0%
TGTGCCTGAAGAAGATGCTT+TGG - tig0020520:51307-51326 Msa1382590:three_prime_UTR 45.0%
AGCATCTTCTTCAGGCACAA+AGG + tig0020520:51308-51327 Msa1382580:CDS 45.0%
!! GGAAAGGCACCAATGCAAAA+AGG + tig0020520:51465-51484 Msa1382580:CDS 45.0%
AGTGCAACCAACACAACCTA+TGG + tig0020520:51533-51552 Msa1382580:CDS 45.0%
TTGTCCTCCATAGGTTGTGT+TGG - tig0020520:51543-51562 Msa1382590:three_prime_UTR 45.0%
! ACACTGACTGGTGACAATAG+AGG + tig0020520:51579-51598 Msa1382580:CDS 45.0%
AGAGGAGCAACAATGCATGT+TGG + tig0020520:51597-51616 Msa1382580:CDS 45.0%
TCTTGTAGGCCCTATGAATG+TGG - tig0020520:51653-51672 Msa1382590:three_prime_UTR 45.0%
GATGTGACAACAGATGGAGA+AGG + tig0020520:51693-51712 Msa1382580:CDS 45.0%
AGACTCAATGGAACATGGTG+AGG + tig0020520:51737-51756 Msa1382580:CDS 45.0%
TCAATGGAACATGGTGAGGT+CGG + tig0020520:51741-51760 Msa1382580:CDS 45.0%
! GGAAGTGTAACTTGAACTCC+AGG - tig0020520:51843-51862 Msa1382590:three_prime_UTR 45.0%
!! TCGTGGTTGATGGTTTCTAC+AGG - tig0020520:51873-51892 Msa1382590:three_prime_UTR 45.0%
GTCTTTATCGTCGTGGTTGA+TGG - tig0020520:51883-51902 Msa1382590:three_prime_UTR 45.0%
TGTGAGTGTCTTTATCGTCG+TGG - tig0020520:51890-51909 Msa1382590:three_prime_UTR 45.0%
TATGGTCGCAAGTTCAGTTG+TGG + tig0020520:51975-51994 Msa1382580:CDS 45.0%
GTGTTCCTGATAGCCAAGAA+GGG - tig0020520:50285-50304 None:intergenic 45.0%
GGCCTAGATGGTCTTTGAAT+GGG - tig0020520:50373-50392 None:intergenic 45.0%
GGACTAGGAGAAAATTCTGC+AGG - tig0020520:50409-50428 None:intergenic 45.0%
! TGTAGCGGCTTCTTGAGTTT+TGG - tig0020520:50434-50453 None:intergenic 45.0%
!!! AGAAGGTGGTTTTGAGTGAG+TGG - tig0020520:50530-50549 None:intergenic 45.0%
! TTTGGCGATGTTGATGGAGA+AGG - tig0020520:50547-50566 None:intergenic 45.0%
! ACATGGTTTGGCGATGTTGA+TGG - tig0020520:50553-50572 None:intergenic 45.0%
TGAGATGCTGCATGAGATGA+TGG - tig0020520:50589-50608 None:intergenic 45.0%
ATCATCTCATGCAGCATCTC+AGG + tig0020520:50588-50607 Msa1382580:CDS 45.0%
!! TGAGGTTGAGTTGAGACAAC+AGG - tig0020520:50616-50635 None:intergenic 45.0%
!! CTTCATGGTGTCATGATGAG+AGG - tig0020520:50644-50663 None:intergenic 45.0%
CTCTCATCATGACACCATGA+AGG + tig0020520:50642-50661 Msa1382580:CDS 45.0%
!! ATTTGGCTTTGGCACCTTCA+TGG - tig0020520:50659-50678 None:intergenic 45.0%
TTAGAAACTCGGGGTGATGT+AGG - tig0020520:50706-50725 None:intergenic 45.0%
GCATCATCTACCATCTCCTT+TGG + tig0020520:50786-50805 Msa1382580:CDS 45.0%
CGCTCTATATCCAAAGGAGA+TGG - tig0020520:50799-50818 None:intergenic 45.0%
GCATTATCCACCATCTCCTT+CGG + tig0020520:50828-50847 Msa1382580:CDS 45.0%
GCATCATCCACCATATCCTT+CGG + tig0020520:50870-50889 Msa1382580:CDS 45.0%
!!! CACCTCATTTTTTTGCTCCG+GGG - tig0020520:50944-50963 Msa1382590:three_prime_UTR 45.0%
! CTTCCCTTTTTCTTCTTGCG+AGG - tig0020520:51010-51029 Msa1382590:three_prime_UTR 45.0%
! CACGGGGATGATTTTCAATG+GGG - tig0020520:51082-51101 Msa1382590:three_prime_UTR 45.0%
! GACACGGGGATGATTTTCAA+TGG - tig0020520:51084-51103 Msa1382590:three_prime_UTR 45.0%
AGATTCTCTGGTTGTGACAC+GGG - tig0020520:51099-51118 Msa1382590:three_prime_UTR 45.0%
TGAGTTTCCAAAGGGGACTT+TGG - tig0020520:51177-51196 Msa1382590:three_prime_UTR 45.0%
! AGTCCCCTTTGGAAACTCAA+AGG + tig0020520:51178-51197 Msa1382580:CDS 45.0%
!! CTTTGGCATGTTGATTCGGT+TGG - tig0020520:51290-51309 Msa1382590:three_prime_UTR 45.0%
! CATGCCAAAGCATCTTCTTC+AGG + tig0020520:51300-51319 Msa1382580:CDS 45.0%
TGTGCCTGAAGAAGATGCTT+TGG - tig0020520:51307-51326 Msa1382590:three_prime_UTR 45.0%
AGCATCTTCTTCAGGCACAA+AGG + tig0020520:51308-51327 Msa1382580:CDS 45.0%
!! GGAAAGGCACCAATGCAAAA+AGG + tig0020520:51465-51484 Msa1382580:CDS 45.0%
AGTGCAACCAACACAACCTA+TGG + tig0020520:51533-51552 Msa1382580:CDS 45.0%
TTGTCCTCCATAGGTTGTGT+TGG - tig0020520:51543-51562 Msa1382590:three_prime_UTR 45.0%
! ACACTGACTGGTGACAATAG+AGG + tig0020520:51579-51598 Msa1382580:CDS 45.0%
AGAGGAGCAACAATGCATGT+TGG + tig0020520:51597-51616 Msa1382580:CDS 45.0%
TCTTGTAGGCCCTATGAATG+TGG - tig0020520:51653-51672 Msa1382590:three_prime_UTR 45.0%
GATGTGACAACAGATGGAGA+AGG + tig0020520:51693-51712 Msa1382580:CDS 45.0%
AGACTCAATGGAACATGGTG+AGG + tig0020520:51737-51756 Msa1382580:CDS 45.0%
TCAATGGAACATGGTGAGGT+CGG + tig0020520:51741-51760 Msa1382580:CDS 45.0%
! GGAAGTGTAACTTGAACTCC+AGG - tig0020520:51843-51862 Msa1382590:three_prime_UTR 45.0%
!! TCGTGGTTGATGGTTTCTAC+AGG - tig0020520:51873-51892 Msa1382590:three_prime_UTR 45.0%
GTCTTTATCGTCGTGGTTGA+TGG - tig0020520:51883-51902 Msa1382590:three_prime_UTR 45.0%
TGTGAGTGTCTTTATCGTCG+TGG - tig0020520:51890-51909 Msa1382590:three_prime_UTR 45.0%
TATGGTCGCAAGTTCAGTTG+TGG + tig0020520:51975-51994 Msa1382580:CDS 45.0%
GGTGTTCCTGATAGCCAAGA+AGG - tig0020520:50286-50305 None:intergenic 50.0%
!! GGACGACGAGACATTGATTC+AGG - tig0020520:50307-50326 None:intergenic 50.0%
GGGCCTAGATGGTCTTTGAA+TGG - tig0020520:50374-50393 None:intergenic 50.0%
GTTATGAGAGAGGGCCTAGA+TGG - tig0020520:50385-50404 None:intergenic 50.0%
TCTGCAGGGGTTATGAGAGA+GGG - tig0020520:50394-50413 None:intergenic 50.0%
TTCTGCAGGGGTTATGAGAG+AGG - tig0020520:50395-50414 None:intergenic 50.0%
!! GCGGCTTCTTGAGTTTTGGT+AGG - tig0020520:50430-50449 None:intergenic 50.0%
!! TGAGGCGGTGAATGGTTTTG+AGG - tig0020520:50463-50482 None:intergenic 50.0%
GGTGGAGAGTTGACATGGTT+TGG - tig0020520:50565-50584 None:intergenic 50.0%
!! ATGGTGGTGGAGAGTTGACA+TGG - tig0020520:50570-50589 None:intergenic 50.0%
! GATGCTGCATGAGATGATGG+TGG - tig0020520:50586-50605 None:intergenic 50.0%
TCATGATGAGAGGGAGACTG+AGG - tig0020520:50634-50653 None:intergenic 50.0%
!!! TTTTTTCGCTCTAGGGCCGA+AGG - tig0020520:50847-50866 Msa1382590:three_prime_UTR 50.0%
!!! TTTTTTCGCTCTAGGGCCGA+AGG - tig0020520:50847-50866 Msa1382590:three_prime_UTR 50.0%
!!! ATTTTTTTGCTCCGGGGTCC+AGG - tig0020520:50938-50957 Msa1382590:three_prime_UTR 50.0%
GACCCCGGAGCAAAAAAATG+AGG + tig0020520:50939-50958 Msa1382580:CDS 50.0%
GGTTCTGCTTCACTTGGAAC+CGG - tig0020520:51048-51067 Msa1382590:three_prime_UTR 50.0%
GATTCTCTGGTTGTGACACG+GGG - tig0020520:51098-51117 Msa1382590:three_prime_UTR 50.0%
AAGAATTGTCCCATCGAGCG+AGG + tig0020520:51419-51438 Msa1382580:CDS 50.0%
TTTCCCTTTCCTCGCTCGAT+GGG - tig0020520:51431-51450 Msa1382590:three_prime_UTR 50.0%
! TTTTCCCTTTCCTCGCTCGA+TGG - tig0020520:51432-51451 Msa1382590:three_prime_UTR 50.0%
ATCGAGCGAGGAAAGGGAAA+AGG + tig0020520:51431-51450 Msa1382580:CDS 50.0%
!! AGGTTGTGTTGGTTGCACTG+AGG - tig0020520:51532-51551 Msa1382590:three_prime_UTR 50.0%
GCAACCAACACAACCTATGG+AGG + tig0020520:51536-51555 Msa1382580:CDS 50.0%
! CTCTTCGGACTCAGTCTTGT+AGG - tig0020520:51667-51686 Msa1382590:three_prime_UTR 50.0%
CAATGGAACATGGTGAGGTC+GGG + tig0020520:51742-51761 Msa1382580:CDS 50.0%
GGTGTTCCTGATAGCCAAGA+AGG - tig0020520:50286-50305 None:intergenic 50.0%
!! GGACGACGAGACATTGATTC+AGG - tig0020520:50307-50326 None:intergenic 50.0%
GGGCCTAGATGGTCTTTGAA+TGG - tig0020520:50374-50393 None:intergenic 50.0%
GTTATGAGAGAGGGCCTAGA+TGG - tig0020520:50385-50404 None:intergenic 50.0%
TCTGCAGGGGTTATGAGAGA+GGG - tig0020520:50394-50413 None:intergenic 50.0%
TTCTGCAGGGGTTATGAGAG+AGG - tig0020520:50395-50414 None:intergenic 50.0%
!! GCGGCTTCTTGAGTTTTGGT+AGG - tig0020520:50430-50449 None:intergenic 50.0%
!! TGAGGCGGTGAATGGTTTTG+AGG - tig0020520:50463-50482 None:intergenic 50.0%
GGTGGAGAGTTGACATGGTT+TGG - tig0020520:50565-50584 None:intergenic 50.0%
!! ATGGTGGTGGAGAGTTGACA+TGG - tig0020520:50570-50589 None:intergenic 50.0%
! GATGCTGCATGAGATGATGG+TGG - tig0020520:50586-50605 None:intergenic 50.0%
TCATGATGAGAGGGAGACTG+AGG - tig0020520:50634-50653 None:intergenic 50.0%
!!! TTTTTTCGCTCTAGGGCCGA+AGG - tig0020520:50847-50866 Msa1382590:three_prime_UTR 50.0%
!!! TTTTTTCGCTCTAGGGCCGA+AGG - tig0020520:50847-50866 Msa1382590:three_prime_UTR 50.0%
!!! ATTTTTTTGCTCCGGGGTCC+AGG - tig0020520:50938-50957 Msa1382590:three_prime_UTR 50.0%
GACCCCGGAGCAAAAAAATG+AGG + tig0020520:50939-50958 Msa1382580:CDS 50.0%
GGTTCTGCTTCACTTGGAAC+CGG - tig0020520:51048-51067 Msa1382590:three_prime_UTR 50.0%
GATTCTCTGGTTGTGACACG+GGG - tig0020520:51098-51117 Msa1382590:three_prime_UTR 50.0%
AAGAATTGTCCCATCGAGCG+AGG + tig0020520:51419-51438 Msa1382580:CDS 50.0%
TTTCCCTTTCCTCGCTCGAT+GGG - tig0020520:51431-51450 Msa1382590:three_prime_UTR 50.0%
! TTTTCCCTTTCCTCGCTCGA+TGG - tig0020520:51432-51451 Msa1382590:three_prime_UTR 50.0%
ATCGAGCGAGGAAAGGGAAA+AGG + tig0020520:51431-51450 Msa1382580:CDS 50.0%
!! AGGTTGTGTTGGTTGCACTG+AGG - tig0020520:51532-51551 Msa1382590:three_prime_UTR 50.0%
GCAACCAACACAACCTATGG+AGG + tig0020520:51536-51555 Msa1382580:CDS 50.0%
! CTCTTCGGACTCAGTCTTGT+AGG - tig0020520:51667-51686 Msa1382590:three_prime_UTR 50.0%
CAATGGAACATGGTGAGGTC+GGG + tig0020520:51742-51761 Msa1382580:CDS 50.0%
TAGTTGGGTGAGGCGGTGAA+TGG - tig0020520:50471-50490 None:intergenic 55.0%
! GTTGGCTTAGTTGGGTGAGG+CGG - tig0020520:50478-50497 None:intergenic 55.0%
!! GGTGTTGGCTTAGTTGGGTG+AGG - tig0020520:50481-50500 None:intergenic 55.0%
! GGCGATGTTGATGGAGAAGG+TGG - tig0020520:50544-50563 None:intergenic 55.0%
!! GCTGCATGAGATGATGGTGG+TGG - tig0020520:50583-50602 None:intergenic 55.0%
GGTGGATGATGCTGAGAAGC+TGG - tig0020520:50736-50755 None:intergenic 55.0%
!! GCATCATCCACCGTCGACTT+TGG + tig0020520:50744-50763 Msa1382580:CDS 55.0%
! TCTAGGGCCGAAGGATATGG+TGG - tig0020520:50880-50899 Msa1382590:three_prime_UTR 55.0%
AGCATCGTCCACCATCTCCT+TGG + tig0020520:50911-50930 Msa1382580:CDS 55.0%
TTGTCCCATCGAGCGAGGAA+AGG + tig0020520:51424-51443 Msa1382580:CDS 55.0%
TGTCCCATCGAGCGAGGAAA+GGG + tig0020520:51425-51444 Msa1382580:CDS 55.0%
CATAACGGCGAACTGTTGGC+TGG - tig0020520:51959-51978 Msa1382590:three_prime_UTR 55.0%
CAGCCAACAGTTCGCCGTTA+TGG + tig0020520:51957-51976 Msa1382580:CDS 55.0%
CGACCATAACGGCGAACTGT+TGG - tig0020520:51963-51982 Msa1382590:three_prime_UTR 55.0%
TAGTTGGGTGAGGCGGTGAA+TGG - tig0020520:50471-50490 None:intergenic 55.0%
! GTTGGCTTAGTTGGGTGAGG+CGG - tig0020520:50478-50497 None:intergenic 55.0%
!! GGTGTTGGCTTAGTTGGGTG+AGG - tig0020520:50481-50500 None:intergenic 55.0%
! GGCGATGTTGATGGAGAAGG+TGG - tig0020520:50544-50563 None:intergenic 55.0%
!! GCTGCATGAGATGATGGTGG+TGG - tig0020520:50583-50602 None:intergenic 55.0%
GGTGGATGATGCTGAGAAGC+TGG - tig0020520:50736-50755 None:intergenic 55.0%
!! GCATCATCCACCGTCGACTT+TGG + tig0020520:50744-50763 Msa1382580:CDS 55.0%
! TCTAGGGCCGAAGGATATGG+TGG - tig0020520:50880-50899 Msa1382590:three_prime_UTR 55.0%
AGCATCGTCCACCATCTCCT+TGG + tig0020520:50911-50930 Msa1382580:CDS 55.0%
TTGTCCCATCGAGCGAGGAA+AGG + tig0020520:51424-51443 Msa1382580:CDS 55.0%
TGTCCCATCGAGCGAGGAAA+GGG + tig0020520:51425-51444 Msa1382580:CDS 55.0%
CATAACGGCGAACTGTTGGC+TGG - tig0020520:51959-51978 Msa1382590:three_prime_UTR 55.0%
CAGCCAACAGTTCGCCGTTA+TGG + tig0020520:51957-51976 Msa1382580:CDS 55.0%
CGACCATAACGGCGAACTGT+TGG - tig0020520:51963-51982 Msa1382590:three_prime_UTR 55.0%
!! TGCTCTGGGGCCAAAGTCGA+CGG - tig0020520:50757-50776 None:intergenic 60.0%
! TCTAGGGCCGAAGGAGATGG+TGG - tig0020520:50838-50857 Msa1382590:three_prime_UTR 60.0%
!! CGCTCTAGGGCCGAAGGATA+TGG - tig0020520:50883-50902 Msa1382590:three_prime_UTR 60.0%
GTCCACCATCTCCTTGGACC+TGG + tig0020520:50917-50936 Msa1382580:CDS 60.0%
GTCCAGGTCCAAGGAGATGG+TGG - tig0020520:50922-50941 Msa1382590:three_prime_UTR 60.0%
ATCTCCTTGGACCTGGACCC+CGG + tig0020520:50924-50943 Msa1382580:CDS 60.0%
!! TGCTCTGGGGCCAAAGTCGA+CGG - tig0020520:50757-50776 None:intergenic 60.0%
! TCTAGGGCCGAAGGAGATGG+TGG - tig0020520:50838-50857 Msa1382590:three_prime_UTR 60.0%
!! CGCTCTAGGGCCGAAGGATA+TGG - tig0020520:50883-50902 Msa1382590:three_prime_UTR 60.0%
GTCCACCATCTCCTTGGACC+TGG + tig0020520:50917-50936 Msa1382580:CDS 60.0%
GTCCAGGTCCAAGGAGATGG+TGG - tig0020520:50922-50941 Msa1382590:three_prime_UTR 60.0%
ATCTCCTTGGACCTGGACCC+CGG + tig0020520:50924-50943 Msa1382580:CDS 60.0%
! TCTGGGGCCAAAGTCGACGG+TGG - tig0020520:50754-50773 None:intergenic 65.0%
!! CGCTCTAGGGCCGAAGGAGA+TGG - tig0020520:50841-50860 Msa1382590:three_prime_UTR 65.0%
GGGGTCCAGGTCCAAGGAGA+TGG - tig0020520:50925-50944 Msa1382590:three_prime_UTR 65.0%
GGAACATGGTGAGGTCGGGC+AGG + tig0020520:51746-51765 Msa1382580:CDS 65.0%
! TCTGGGGCCAAAGTCGACGG+TGG - tig0020520:50754-50773 None:intergenic 65.0%
!! CGCTCTAGGGCCGAAGGAGA+TGG - tig0020520:50841-50860 Msa1382590:three_prime_UTR 65.0%
GGGGTCCAGGTCCAAGGAGA+TGG - tig0020520:50925-50944 Msa1382590:three_prime_UTR 65.0%
GGAACATGGTGAGGTCGGGC+AGG + tig0020520:51746-51765 Msa1382580:CDS 65.0%
TGCTCCGGGGTCCAGGTCCA+AGG - tig0020520:50931-50950 Msa1382590:three_prime_UTR 70.0%
TGCTCCGGGGTCCAGGTCCA+AGG - tig0020520:50931-50950 Msa1382590:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
tig0020520 gene 50247 52022 50247 ID=Msa1382580;Name=Msa1382580
tig0020520 mRNA 50247 52022 50247 ID=Msa1382580-mRNA-1;Parent=Msa1382580;Name=Msa1382580-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|591
tig0020520 exon 50247 52022 50247 ID=Msa1382580-mRNA-1:exon:8160;Parent=Msa1382580-mRNA-1
tig0020520 CDS 50247 52022 50247 ID=Msa1382580-mRNA-1:cds;Parent=Msa1382580-mRNA-1
Gene Sequence

>Msa1382580

ATGGCACAAAGAAAGCCATCATTTCGTTTTAAAATCCCTTCTTGGCTATCAGGAACACCTGAATCAATGTCTCGTCGTCCGAAAGACGCATCAAAACCAATTACACGTTCAGACACAAATGTTCCCATTCAAAGACCATCTAGGCCCTCTCTCATAACCCCTGCAGAATTTTCTCCTAGTCCTACCAAAACTCAAGAAGCCGCTACAATTGAACCTCAAAACCATTCACCGCCTCACCCAACTAAGCCAACACCATTATCATCGTCAGTGTTTGTTGAAACCACTCACTCAAAACCACCTTCTCCATCAACATCGCCAAACCATGTCAACTCTCCACCACCATCATCTCATGCAGCATCTCAGGTTCCTGTTGTCTCAACTCAACCTCAGTCTCCCTCTCATCATGACACCATGAAGGTGCCAAAGCCAAATTCTTCTGCTGAAGAAAGCACTCATCCTACATCACCCCGAGTTTCTAAAATTGAGCCAGCTTCTCAGCATCATCCACCGTCGACTTTGGCCCCAGAGCAAAAAAATGAGCATCATCTACCATCTCCTTTGGATATAGAGCGAAAAAATGAGCATTATCCACCATCTCCTTCGGCCCTAGAGCGAAAAAATGAGCATCATCCACCATATCCTTCGGCCCTAGAGCGAAAAAATGAGCATCGTCCACCATCTCCTTGGACCTGGACCCCGGAGCAAAAAAATGAGGTGTTAAAGGCTAACCATGAAGAAAACACTCGGCATACATCATCTACCTCGCAAGAAGAAAAAGGGAAGATGTCAATGTCTGATCCGGTTCCAAGTGAAGCAGAACCAAAGATGAAGTCCCCATTGAAAATCATCCCCGTGTCACAACCAGAGAATCTTTCTAAGCACACAAAAACAAAATTAGATGAGGAATTATCAATCTCAAAAATAACACCAAAGTCCCCTTTGGAAACTCAAAGGAAGTTCCTTCAAACTAAAGAGAAAGAGAAAGCTATGCATGAAACCAAAAAAGTAAGAAACACAAAAGACAAAGATAAAAGTACTAGCCAACCGAATCAACATGCCAAAGCATCTTCTTCAGGCACAAAGGATAAGAAGCATCATGGTGTAAGAGAAACTGTAGAGAGAAAGATAATGTTTTCCACATCAAACTCTAGTGGGAAAGACATATCACACGAAAGAATTGTCCCATCGAGCGAGGAAAGGGAAAAGGAAAATGAAAAGGGAAAGGCACCAATGCAAAAAGGTATCAAAGATGATATTACAAAGTTTGTTCATAAAATATCAGCCTCAGTGCAACCAACACAACCTATGGAGGACAAAAAATTCAGTGTCATAACACTGACTGGTGACAATAGAGGAGCAACAATGCATGTTGGTTCTGAATCAGATAAGAAAGAAGGGTCAATCCACATTCATAGGGCCTACAAGACTGAGTCCGAAGAGAGCATTGATGTGACAACAGATGGAGAAGGAAACACTAACAATGAGGAAGAAGACTCAATGGAACATGGTGAGGTCGGGCAGGCTTATGTTAACAGCAACATACAAAGTATCAATAATTCACTCATGTTTCATGGTTCAATCAATGAAAGAGACCCTGGAGTTCAAGTTACACTTCCACAAAAGCCTGTAGAAACCATCAACCACGACGATAAAGACACTCACAATCGCAGGACTGAGTTTAACATTAGTCGGTCTCAGAAGTCAACGTTCCAGCCAACAGTTCGCCGTTATGGTCGCAAGTTCAGTTGTGGAAATGAAGACATTGAGATAATGTGA
Protein sequence

>Msa1382580

MAQRKPSFRFKIPSWLSGTPESMSRRPKDASKPITRSDTNVPIQRPSRPSLITPAEFSPSPTKTQEAATIEPQNHSPPHPTKPTPLSSSVFVETTHSKPPSPSTSPNHVNSPPPSSHAASQVPVVSTQPQSPSHHDTMKVPKPNSSAEESTHPTSPRVSKIEPASQHHPPSTLAPEQKNEHHLPSPLDIERKNEHYPPSPSALERKNEHHPPYPSALERKNEHRPPSPWTWTPEQKNEVLKANHEENTRHTSSTSQEEKGKMSMSDPVPSEAEPKMKSPLKIIPVSQPENLSKHTKTKLDEELSISKITPKSPLETQRKFLQTKEKEKAMHETKKVRNTKDKDKSTSQPNQHAKASSSGTKDKKHHGVRETVERKIMFSTSNSSGKDISHERIVPSSEEREKENEKGKAPMQKGIKDDITKFVHKISASVQPTQPMEDKKFSVITLTGDNRGATMHVGSESDKKEGSIHIHRAYKTESEESIDVTTDGEGNTNNEEEDSMEHGEVGQAYVNSNIQSINNSLMFHGSINERDPGVQVTLPQKPVETINHDDKDTHNRRTEFNISRSQKSTFQPTVRRYGRKFSCGNEDIEIM*