Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003740 | XP_013466122.1 | 91.554 | 592 | 35 | 2 | 1 | 591 | 1 | 578 | 0.0 | 1068 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003740 | Msa0015150 | 0.819239 | 1.288946e-52 | -8.615850e-47 |
| Msa0003740 | Msa0064120 | 0.810230 | 1.278002e-50 | -8.615850e-47 |
| Msa0003740 | Msa0137210 | 0.800416 | 1.456158e-48 | -8.615850e-47 |
| Msa0003740 | Msa0155180 | 0.832209 | 1.077208e-55 | -8.615850e-47 |
| Msa0003740 | Msa0182400 | 0.834507 | 2.880084e-56 | -8.615850e-47 |
| Msa0003740 | Msa0268100 | 0.826991 | 2.001533e-54 | -8.615850e-47 |
| Msa0003740 | Msa0325720 | 0.815285 | 9.997684e-52 | -8.615850e-47 |
| Msa0003740 | Msa0427820 | 0.801160 | 1.026318e-48 | -8.615850e-47 |
| Msa0003740 | Msa0525210 | 0.801944 | 7.088501e-49 | -8.615850e-47 |
| Msa0003740 | Msa0526010 | 0.825385 | 4.825347e-54 | -8.615850e-47 |
| Msa0003740 | Msa0530390 | 0.805813 | 1.113691e-49 | -8.615850e-47 |
| Msa0003740 | Msa0609300 | 0.819992 | 8.676275e-53 | -8.615850e-47 |
| Msa0003740 | Msa0622110 | 0.827708 | 1.347219e-54 | -8.615850e-47 |
| Msa0003740 | Msa0665160 | 0.806482 | 8.053045e-50 | -8.615850e-47 |
| Msa0003740 | Msa0691910 | 0.814190 | 1.747869e-51 | -8.615850e-47 |
| Msa0003740 | Msa1039680 | 0.816837 | 4.501844e-52 | -8.615850e-47 |
| Msa0003740 | Msa1219820 | 0.832262 | 1.045262e-55 | -8.615850e-47 |
| Msa0003740 | Msa1267050 | 0.841570 | 4.386506e-58 | -8.615850e-47 |
| Msa0003740 | Msa1267180 | 0.844481 | 7.363461e-59 | -8.615850e-47 |
| Msa0003740 | Msa1304950 | 0.821966 | 3.048167e-53 | -8.615850e-47 |
| Msa0003740 | Msa1360930 | 0.824513 | 7.751749e-54 | -8.615850e-47 |
| Msa0003740 | Msa1382580 | 0.980826 | 4.010358e-151 | -8.615850e-47 |
| Msa0003740 | Msa1401520 | 0.840348 | 9.177443e-58 | -8.615850e-47 |
| Msa0003740 | Msa1404480 | 0.830588 | 2.698809e-55 | -8.615850e-47 |
| Msa0003740 | Msa1429860 | 0.821398 | 4.124044e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003740 | MtrunA17_Chr1g0155291 | 91.554 | 592 | 35 | 2 | 1 | 591 | 1 | 578 | 0.0 | 1068 |
| Msa0003740 | MtrunA17_Chr1g0156141 | 97.778 | 135 | 3 | 0 | 330 | 464 | 1 | 135 | 4.09e-88 | 269 |
| Msa0003740 | MtrunA17_Chr3g0141661 | 39.759 | 249 | 76 | 12 | 371 | 585 | 55 | 263 | 1.85e-33 | 129 |
| Msa0003740 | MtrunA17_Chr7g0276061 | 36.283 | 113 | 64 | 4 | 437 | 543 | 246 | 356 | 2.73e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0003740 | AT1G75260.1 | 30.820 | 305 | 171 | 10 | 314 | 589 | 218 | 511 | 7.49e-24 | 105 |
Find 130 sgRNAs with CRISPR-Local
Find 338 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCTTCAGCAGAAGAATT+TGG | 0.192471 | 1_1:-6290641 | None:intergenic |
| AAAATCCCTTCTTGGCTATC+AGG | 0.245435 | 1_1:+6290245 | Msa0003740:CDS |
| TCTACCTCGCAAGAAGAAAA+AGG | 0.256159 | 1_1:+6290971 | Msa0003740:CDS |
| TTCAATGGGGACTTCATCTT+TGG | 0.269120 | 1_1:-6291034 | None:intergenic |
| GTCTTTATCGTCGTGGTTGA+TGG | 0.275216 | 1_1:-6291848 | None:intergenic |
| AATAATTCACTCATGTTTCA+TGG | 0.298043 | 1_1:+6291766 | Msa0003740:CDS |
| TCTCTTTCTCTTTAGTTTGA+AGG | 0.302700 | 1_1:-6291174 | None:intergenic |
| GGACGACGAGACATTGATTC+AGG | 0.324415 | 1_1:-6290272 | None:intergenic |
| AAGGGTCAATCCACATTCAT+AGG | 0.332387 | 1_1:+6291608 | Msa0003740:CDS |
| CGCTCTAGGGCCGAAGGATA+TGG | 0.340717 | 1_1:-6290848 | None:intergenic |
| ATTTGGCTTTGGCACCTTCA+TGG | 0.372180 | 1_1:-6290624 | None:intergenic |
| ATCTTTGGTTCTGCTTCACT+TGG | 0.374825 | 1_1:-6291019 | None:intergenic |
| CAGCCAACAGTTCGCCGTTA+TGG | 0.376958 | 1_1:+6291925 | Msa0003740:CDS |
| GATAATGGTGTTGGCTTAGT+TGG | 0.377781 | 1_1:-6290452 | None:intergenic |
| TGTAGCGGCTTCTTGAGTTT+TGG | 0.384330 | 1_1:-6290399 | None:intergenic |
| ACAAACACTGACGATGATAA+TGG | 0.389981 | 1_1:-6290467 | None:intergenic |
| CTCTTCGGACTCAGTCTTGT+AGG | 0.397966 | 1_1:-6291632 | None:intergenic |
| TTTGTGTCTGAACGTGTAAT+TGG | 0.401935 | 1_1:-6290311 | None:intergenic |
| GGTTCTGCTTCACTTGGAAC+CGG | 0.405060 | 1_1:-6291013 | None:intergenic |
| ACATGGTTTGGCGATGTTGA+TGG | 0.413588 | 1_1:-6290518 | None:intergenic |
| GGAAAGGCACCAATGCAAAA+AGG | 0.413609 | 1_1:+6291433 | Msa0003740:CDS |
| TCAGCAGAAGAATTTGGCTT+TGG | 0.419185 | 1_1:-6290635 | None:intergenic |
| TGTGCCTGAAGAAGATGCTT+TGG | 0.420059 | 1_1:-6291272 | None:intergenic |
| ATCATCTCATGCAGCATCTC+AGG | 0.426612 | 1_1:+6290556 | Msa0003740:CDS |
| CATGCCAAAGCATCTTCTTC+AGG | 0.430172 | 1_1:+6291268 | Msa0003740:CDS |
| ATCTCCTTGGACCTGGACCC+CGG | 0.433688 | 1_1:+6290892 | Msa0003740:CDS |
| GTGTGCTTAGAAAGATTCTC+TGG | 0.434313 | 1_1:-6291076 | None:intergenic |
| AAGGGAAAAGGAAAATGAAA+AGG | 0.436087 | 1_1:+6291411 | Msa0003740:CDS |
| TGAGTTTCCAAAGGGGACTT+TGG | 0.437954 | 1_1:-6291142 | None:intergenic |
| GCATCATCTACCATCTCCTT+TGG | 0.454093 | 1_1:+6290754 | Msa0003740:CDS |
| GTTATGAGAGAGGGCCTAGA+TGG | 0.455776 | 1_1:-6290350 | None:intergenic |
| TAGTTGGGTGAGGCGGTGAA+TGG | 0.458825 | 1_1:-6290436 | None:intergenic |
| GGGGTCCAGGTCCAAGGAGA+TGG | 0.458939 | 1_1:-6290890 | None:intergenic |
| AATAACACCAAAGTCCCCTT+TGG | 0.463540 | 1_1:+6291135 | Msa0003740:CDS |
| CATAACGGCGAACTGTTGGC+TGG | 0.467257 | 1_1:-6291924 | None:intergenic |
| GCATCATCCACCGTCGACTT+TGG | 0.467942 | 1_1:+6290712 | Msa0003740:CDS |
| CTTTGGCATGTTGATTCGGT+TGG | 0.469572 | 1_1:-6291255 | None:intergenic |
| GGGCCTAGATGGTCTTTGAA+TGG | 0.471208 | 1_1:-6290339 | None:intergenic |
| GGTGGAGAGTTGACATGGTT+TGG | 0.472367 | 1_1:-6290530 | None:intergenic |
| ATAATGGTGTTGGCTTAGTT+GGG | 0.473846 | 1_1:-6290451 | None:intergenic |
| TCGTGGTTGATGGTTTCTAC+AGG | 0.474450 | 1_1:-6291838 | None:intergenic |
| TTTCCCTTTCCTCGCTCGAT+GGG | 0.476396 | 1_1:-6291396 | None:intergenic |
| CGCTCTAGGGCCGAAGGAGA+TGG | 0.477305 | 1_1:-6290806 | None:intergenic |
| TGTCACATCAATGCTCTCTT+CGG | 0.477554 | 1_1:-6291647 | None:intergenic |
| GATGCTTTGGCATGTTGATT+CGG | 0.479473 | 1_1:-6291259 | None:intergenic |
| CAATGGAACATGGTGAGGTC+GGG | 0.480101 | 1_1:+6291710 | Msa0003740:CDS |
| AGCATCGTCCACCATCTCCT+TGG | 0.484267 | 1_1:+6290879 | Msa0003740:CDS |
| TGCTCTGGGGCCAAAGTCGA+CGG | 0.489813 | 1_1:-6290722 | None:intergenic |
| GGTGGATGATGCTGAGAAGC+TGG | 0.491016 | 1_1:-6290701 | None:intergenic |
| TGTCCCATCGAGCGAGGAAA+GGG | 0.494803 | 1_1:+6291393 | Msa0003740:CDS |
| TCTGAATCAGATAAGAAAGA+AGG | 0.496204 | 1_1:+6291589 | Msa0003740:CDS |
| TGAGGTTGAGTTGAGACAAC+AGG | 0.500660 | 1_1:-6290581 | None:intergenic |
| ATCGAGCGAGGAAAGGGAAA+AGG | 0.501898 | 1_1:+6291399 | Msa0003740:CDS |
| GGCCTAGATGGTCTTTGAAT+GGG | 0.503318 | 1_1:-6290338 | None:intergenic |
| AGTGCAACCAACACAACCTA+TGG | 0.506396 | 1_1:+6291501 | Msa0003740:CDS |
| CGCTCTATATCCAAAGGAGA+TGG | 0.507278 | 1_1:-6290764 | None:intergenic |
| TGCTCCGGGGTCCAGGTCCA+AGG | 0.507731 | 1_1:-6290896 | None:intergenic |
| TTAGAAACTCGGGGTGATGT+AGG | 0.508330 | 1_1:-6290671 | None:intergenic |
| GGAAGTGTAACTTGAACTCC+AGG | 0.513147 | 1_1:-6291808 | None:intergenic |
| GGACTAGGAGAAAATTCTGC+AGG | 0.513377 | 1_1:-6290374 | None:intergenic |
| AGATTCTCTGGTTGTGACAC+GGG | 0.514523 | 1_1:-6291064 | None:intergenic |
| GAAGATGTCAATGTCTGATC+CGG | 0.516487 | 1_1:+6290994 | Msa0003740:CDS |
| GGAACATGGTGAGGTCGGGC+AGG | 0.517884 | 1_1:+6291714 | Msa0003740:CDS |
| AGGGAAAAGGAAAATGAAAA+GGG | 0.518930 | 1_1:+6291412 | Msa0003740:CDS |
| TTGTCCTCCATAGGTTGTGT+TGG | 0.520819 | 1_1:-6291508 | None:intergenic |
| ACTTCCTTTGAGTTTCCAAA+GGG | 0.524701 | 1_1:-6291150 | None:intergenic |
| GCATTATCCACCATCTCCTT+CGG | 0.525548 | 1_1:+6290796 | Msa0003740:CDS |
| GCATCATCCACCATATCCTT+CGG | 0.526033 | 1_1:+6290838 | Msa0003740:CDS |
| TGATGGCTTTCTTTGTGCCA+TGG | 0.529229 | 1_1:-6290213 | None:intergenic |
| AGCATTGATGTGACAACAGA+TGG | 0.531129 | 1_1:+6291655 | Msa0003740:CDS |
| GGTGTTGGCTTAGTTGGGTG+AGG | 0.539545 | 1_1:-6290446 | None:intergenic |
| GTCCACCATCTCCTTGGACC+TGG | 0.539700 | 1_1:+6290885 | Msa0003740:CDS |
| TCAATGGAACATGGTGAGGT+CGG | 0.539979 | 1_1:+6291709 | Msa0003740:CDS |
| TTCAGTGTCATAACACTGAC+TGG | 0.540460 | 1_1:+6291535 | Msa0003740:CDS |
| GGCGATGTTGATGGAGAAGG+TGG | 0.541251 | 1_1:-6290509 | None:intergenic |
| GGTGTTCCTGATAGCCAAGA+AGG | 0.547165 | 1_1:-6290251 | None:intergenic |
| TCAATCAATGAAAGAGACCC+TGG | 0.549089 | 1_1:+6291790 | Msa0003740:CDS |
| TGAGATGCTGCATGAGATGA+TGG | 0.549906 | 1_1:-6290554 | None:intergenic |
| CGACCATAACGGCGAACTGT+TGG | 0.551046 | 1_1:-6291928 | None:intergenic |
| CAATGAGGAAGAAGACTCAA+TGG | 0.551065 | 1_1:+6291693 | Msa0003740:CDS |
| AACTTCCTTTGAGTTTCCAA+AGG | 0.552524 | 1_1:-6291151 | None:intergenic |
| GGACTGAGTTTAACATTAGT+CGG | 0.558841 | 1_1:+6291884 | Msa0003740:CDS |
| GTCCAGGTCCAAGGAGATGG+TGG | 0.560062 | 1_1:-6290887 | None:intergenic |
| TTGTCCCATCGAGCGAGGAA+AGG | 0.563695 | 1_1:+6291392 | Msa0003740:CDS |
| TTCCCATTCAAAGACCATCT+AGG | 0.566568 | 1_1:+6290336 | Msa0003740:CDS |
| TATGGTCGCAAGTTCAGTTG+TGG | 0.571661 | 1_1:+6291943 | Msa0003740:CDS |
| AAAGGAAAATGAAAAGGGAA+AGG | 0.572297 | 1_1:+6291417 | Msa0003740:CDS |
| CTGAATCAGATAAGAAAGAA+GGG | 0.574236 | 1_1:+6291590 | Msa0003740:CDS |
| TTTCCACATCAAACTCTAGT+GGG | 0.574624 | 1_1:+6291347 | Msa0003740:CDS |
| AACTGAACTTGCGACCATAA+CGG | 0.579458 | 1_1:-6291939 | None:intergenic |
| AGGGTCAATCCACATTCATA+GGG | 0.580060 | 1_1:+6291609 | Msa0003740:CDS |
| CTCTCATCATGACACCATGA+AGG | 0.582906 | 1_1:+6290610 | Msa0003740:CDS |
| AAGATTCTCTGGTTGTGACA+CGG | 0.584236 | 1_1:-6291065 | None:intergenic |
| TCTTGTAGGCCCTATGAATG+TGG | 0.587297 | 1_1:-6291618 | None:intergenic |
| TTTCCCACTAGAGTTTGATG+TGG | 0.593804 | 1_1:-6291350 | None:intergenic |
| TTTGGCGATGTTGATGGAGA+AGG | 0.595989 | 1_1:-6290512 | None:intergenic |
| AAGAATTGTCCCATCGAGCG+AGG | 0.597091 | 1_1:+6291387 | Msa0003740:CDS |
| TTCTGCAGGGGTTATGAGAG+AGG | 0.599326 | 1_1:-6290360 | None:intergenic |
| TTCATGGTGTCATGATGAGA+GGG | 0.599426 | 1_1:-6290608 | None:intergenic |
| CTTCATGGTGTCATGATGAG+AGG | 0.599937 | 1_1:-6290609 | None:intergenic |
| ACAAAGGATGAGAAGCATCA+TGG | 0.604026 | 1_1:+6291292 | Msa0003740:CDS |
| AGCATCTTCTTCAGGCACAA+AGG | 0.604517 | 1_1:+6291276 | Msa0003740:CDS |
| ATAAAGACACTCACAATCGC+AGG | 0.606983 | 1_1:+6291863 | Msa0003740:CDS |
| ATGGTGGTGGAGAGTTGACA+TGG | 0.608320 | 1_1:-6290535 | None:intergenic |
| GACTAGGAGAAAATTCTGCA+GGG | 0.610417 | 1_1:-6290373 | None:intergenic |
| GTTGGCTTAGTTGGGTGAGG+CGG | 0.613775 | 1_1:-6290443 | None:intergenic |
| GATTCTCTGGTTGTGACACG+GGG | 0.616837 | 1_1:-6291063 | None:intergenic |
| AGTCCCCTTTGGAAACTCAA+AGG | 0.618613 | 1_1:+6291146 | Msa0003740:CDS |
| ACACTGACTGGTGACAATAG+AGG | 0.621058 | 1_1:+6291547 | Msa0003740:CDS |
| GCTGCATGAGATGATGGTGG+TGG | 0.628158 | 1_1:-6290548 | None:intergenic |
| AGAGGAGCAACAATGCATGT+TGG | 0.629716 | 1_1:+6291565 | Msa0003740:CDS |
| GCAACCAACACAACCTATGG+AGG | 0.633233 | 1_1:+6291504 | Msa0003740:CDS |
| GTGTTCCTGATAGCCAAGAA+GGG | 0.637553 | 1_1:-6290250 | None:intergenic |
| ACTGACGATGATAATGGTGT+TGG | 0.638275 | 1_1:-6290461 | None:intergenic |
| TCTGCAGGGGTTATGAGAGA+GGG | 0.638447 | 1_1:-6290359 | None:intergenic |
| CTAACCATGAAGAAAACACT+CGG | 0.642497 | 1_1:+6290939 | Msa0003740:CDS |
| AGACTCAATGGAACATGGTG+AGG | 0.644780 | 1_1:+6291705 | Msa0003740:CDS |
| GAAGAAGACTCAATGGAACA+TGG | 0.649274 | 1_1:+6291700 | Msa0003740:CDS |
| TCTAGGGCCGAAGGAGATGG+TGG | 0.656152 | 1_1:-6290803 | None:intergenic |
| TCTAGGGCCGAAGGATATGG+TGG | 0.657238 | 1_1:-6290845 | None:intergenic |
| TCTGGGGCCAAAGTCGACGG+TGG | 0.660567 | 1_1:-6290719 | None:intergenic |
| TGTGAGTGTCTTTATCGTCG+TGG | 0.661271 | 1_1:-6291855 | None:intergenic |
| GATGTGACAACAGATGGAGA+AGG | 0.661909 | 1_1:+6291661 | Msa0003740:CDS |
| ACTAGGAGAAAATTCTGCAG+GGG | 0.680257 | 1_1:-6290372 | None:intergenic |
| CTTCCTTTGAGTTTCCAAAG+GGG | 0.694307 | 1_1:-6291149 | None:intergenic |
| AGAAGGAAACACTAACAATG+AGG | 0.700109 | 1_1:+6291678 | Msa0003740:CDS |
| TCATGATGAGAGGGAGACTG+AGG | 0.703551 | 1_1:-6290599 | None:intergenic |
| GATGCTGCATGAGATGATGG+TGG | 0.727541 | 1_1:-6290551 | None:intergenic |
| AGGTTGTGTTGGTTGCACTG+AGG | 0.746719 | 1_1:-6291497 | None:intergenic |
| GAAGTGTAACTTGAACTCCA+GGG | 0.753989 | 1_1:-6291807 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTGTGTTTCTTACTTTTT+TGG | - | chr1_1:6291215-6291234 | None:intergenic | 20.0% |
| !!! | TTTTGTGTTTCTTACTTTTT+TGG | - | chr1_1:6291215-6291234 | None:intergenic | 20.0% |
| ! | CACAAAAACAAAATTAGATG+AGG | + | chr1_1:6291096-6291115 | Msa0003740:CDS | 25.0% |
| ! | AATAATTCACTCATGTTTCA+TGG | + | chr1_1:6291766-6291785 | Msa0003740:CDS | 25.0% |
| ! | CACAAAAACAAAATTAGATG+AGG | + | chr1_1:6291096-6291115 | Msa0003740:CDS | 25.0% |
| ! | AATAATTCACTCATGTTTCA+TGG | + | chr1_1:6291766-6291785 | Msa0003740:CDS | 25.0% |
| !!! | GGGATTTTAAAACGAAATGA+TGG | - | chr1_1:6290233-6290252 | None:intergenic | 30.0% |
| !!! | TTCGTTTTAAAATCCCTTCT+TGG | + | chr1_1:6290237-6290256 | Msa0003740:CDS | 30.0% |
| !!! | TTTTTTCGCTCTATATCCAA+AGG | - | chr1_1:6290773-6290792 | None:intergenic | 30.0% |
| ! | GCAAAAAAATGAGGTGTTAA+AGG | + | chr1_1:6290916-6290935 | Msa0003740:CDS | 30.0% |
| !! | TCTCTTTCTCTTTAGTTTGA+AGG | - | chr1_1:6291177-6291196 | None:intergenic | 30.0% |
| AAGGGAAAAGGAAAATGAAA+AGG | + | chr1_1:6291411-6291430 | Msa0003740:CDS | 30.0% | |
| AGGGAAAAGGAAAATGAAAA+GGG | + | chr1_1:6291412-6291431 | Msa0003740:CDS | 30.0% | |
| AAAGGAAAATGAAAAGGGAA+AGG | + | chr1_1:6291417-6291436 | Msa0003740:CDS | 30.0% | |
| ! | TCTTTGATACCTTTTTGCAT+TGG | - | chr1_1:6291445-6291464 | None:intergenic | 30.0% |
| TCTGAATCAGATAAGAAAGA+AGG | + | chr1_1:6291589-6291608 | Msa0003740:CDS | 30.0% | |
| CTGAATCAGATAAGAAAGAA+GGG | + | chr1_1:6291590-6291609 | Msa0003740:CDS | 30.0% | |
| !!! | GGGATTTTAAAACGAAATGA+TGG | - | chr1_1:6290233-6290252 | None:intergenic | 30.0% |
| !!! | TTCGTTTTAAAATCCCTTCT+TGG | + | chr1_1:6290237-6290256 | Msa0003740:CDS | 30.0% |
| !!! | TTTTTTCGCTCTATATCCAA+AGG | - | chr1_1:6290773-6290792 | None:intergenic | 30.0% |
| ! | GCAAAAAAATGAGGTGTTAA+AGG | + | chr1_1:6290916-6290935 | Msa0003740:CDS | 30.0% |
| !! | TCTCTTTCTCTTTAGTTTGA+AGG | - | chr1_1:6291177-6291196 | None:intergenic | 30.0% |
| AAGGGAAAAGGAAAATGAAA+AGG | + | chr1_1:6291411-6291430 | Msa0003740:CDS | 30.0% | |
| AGGGAAAAGGAAAATGAAAA+GGG | + | chr1_1:6291412-6291431 | Msa0003740:CDS | 30.0% | |
| AAAGGAAAATGAAAAGGGAA+AGG | + | chr1_1:6291417-6291436 | Msa0003740:CDS | 30.0% | |
| ! | TCTTTGATACCTTTTTGCAT+TGG | - | chr1_1:6291445-6291464 | None:intergenic | 30.0% |
| TCTGAATCAGATAAGAAAGA+AGG | + | chr1_1:6291589-6291608 | Msa0003740:CDS | 30.0% | |
| CTGAATCAGATAAGAAAGAA+GGG | + | chr1_1:6291590-6291609 | Msa0003740:CDS | 30.0% | |
| !!! | ATTGGTTTTGATGCGTCTTT+CGG | - | chr1_1:6290296-6290315 | None:intergenic | 35.0% |
| TTTGTGTCTGAACGTGTAAT+TGG | - | chr1_1:6290314-6290333 | None:intergenic | 35.0% | |
| !!! | GTTTTGAGGTTCAATTGTAG+CGG | - | chr1_1:6290417-6290436 | None:intergenic | 35.0% |
| !! | ATAATGGTGTTGGCTTAGTT+GGG | - | chr1_1:6290454-6290473 | None:intergenic | 35.0% |
| ACAAACACTGACGATGATAA+TGG | - | chr1_1:6290470-6290489 | None:intergenic | 35.0% | |
| CTTTCTTCAGCAGAAGAATT+TGG | - | chr1_1:6290644-6290663 | None:intergenic | 35.0% | |
| !! | TGGCTCAATTTTAGAAACTC+GGG | - | chr1_1:6290684-6290703 | None:intergenic | 35.0% |
| !! | CTGGCTCAATTTTAGAAACT+CGG | - | chr1_1:6290685-6290704 | None:intergenic | 35.0% |
| !!! | ATGCTCATTTTTTTGCTCTG+GGG | - | chr1_1:6290738-6290757 | None:intergenic | 35.0% |
| !!! | GATGCTCATTTTTTTGCTCT+GGG | - | chr1_1:6290739-6290758 | None:intergenic | 35.0% |
| !!! | TGATGCTCATTTTTTTGCTC+TGG | - | chr1_1:6290740-6290759 | None:intergenic | 35.0% |
| !!! | ATGCTCATTTTTTCGCTCTA+GGG | - | chr1_1:6290780-6290799 | None:intergenic | 35.0% |
| !!! | ATGCTCATTTTTTCGCTCTA+GGG | - | chr1_1:6290780-6290799 | None:intergenic | 35.0% |
| !!! | AACACCTCATTTTTTTGCTC+CGG | - | chr1_1:6290914-6290933 | None:intergenic | 35.0% |
| CTAACCATGAAGAAAACACT+CGG | + | chr1_1:6290939-6290958 | Msa0003740:CDS | 35.0% | |
| ! | ACTTCCTTTGAGTTTCCAAA+GGG | - | chr1_1:6291153-6291172 | None:intergenic | 35.0% |
| ! | AACTTCCTTTGAGTTTCCAA+AGG | - | chr1_1:6291154-6291173 | None:intergenic | 35.0% |
| ! | TTTTCCACATCAAACTCTAG+TGG | + | chr1_1:6291346-6291365 | Msa0003740:CDS | 35.0% |
| TTTCCACATCAAACTCTAGT+GGG | + | chr1_1:6291347-6291366 | Msa0003740:CDS | 35.0% | |
| !!! | CTGAATTTTTTGTCCTCCAT+AGG | - | chr1_1:6291520-6291539 | None:intergenic | 35.0% |
| AGAAGGAAACACTAACAATG+AGG | + | chr1_1:6291678-6291697 | Msa0003740:CDS | 35.0% | |
| GGACTGAGTTTAACATTAGT+CGG | + | chr1_1:6291884-6291903 | Msa0003740:CDS | 35.0% | |
| !!! | ATTGGTTTTGATGCGTCTTT+CGG | - | chr1_1:6290296-6290315 | None:intergenic | 35.0% |
| TTTGTGTCTGAACGTGTAAT+TGG | - | chr1_1:6290314-6290333 | None:intergenic | 35.0% | |
| !!! | GTTTTGAGGTTCAATTGTAG+CGG | - | chr1_1:6290417-6290436 | None:intergenic | 35.0% |
| !! | ATAATGGTGTTGGCTTAGTT+GGG | - | chr1_1:6290454-6290473 | None:intergenic | 35.0% |
| ACAAACACTGACGATGATAA+TGG | - | chr1_1:6290470-6290489 | None:intergenic | 35.0% | |
| CTTTCTTCAGCAGAAGAATT+TGG | - | chr1_1:6290644-6290663 | None:intergenic | 35.0% | |
| !! | TGGCTCAATTTTAGAAACTC+GGG | - | chr1_1:6290684-6290703 | None:intergenic | 35.0% |
| !! | CTGGCTCAATTTTAGAAACT+CGG | - | chr1_1:6290685-6290704 | None:intergenic | 35.0% |
| !!! | ATGCTCATTTTTTTGCTCTG+GGG | - | chr1_1:6290738-6290757 | None:intergenic | 35.0% |
| !!! | GATGCTCATTTTTTTGCTCT+GGG | - | chr1_1:6290739-6290758 | None:intergenic | 35.0% |
| !!! | TGATGCTCATTTTTTTGCTC+TGG | - | chr1_1:6290740-6290759 | None:intergenic | 35.0% |
| !!! | ATGCTCATTTTTTCGCTCTA+GGG | - | chr1_1:6290780-6290799 | None:intergenic | 35.0% |
| !!! | ATGCTCATTTTTTCGCTCTA+GGG | - | chr1_1:6290780-6290799 | None:intergenic | 35.0% |
| !!! | AACACCTCATTTTTTTGCTC+CGG | - | chr1_1:6290914-6290933 | None:intergenic | 35.0% |
| CTAACCATGAAGAAAACACT+CGG | + | chr1_1:6290939-6290958 | Msa0003740:CDS | 35.0% | |
| ! | ACTTCCTTTGAGTTTCCAAA+GGG | - | chr1_1:6291153-6291172 | None:intergenic | 35.0% |
| ! | AACTTCCTTTGAGTTTCCAA+AGG | - | chr1_1:6291154-6291173 | None:intergenic | 35.0% |
| ! | TTTTCCACATCAAACTCTAG+TGG | + | chr1_1:6291346-6291365 | Msa0003740:CDS | 35.0% |
| TTTCCACATCAAACTCTAGT+GGG | + | chr1_1:6291347-6291366 | Msa0003740:CDS | 35.0% | |
| !!! | CTGAATTTTTTGTCCTCCAT+AGG | - | chr1_1:6291520-6291539 | None:intergenic | 35.0% |
| AGAAGGAAACACTAACAATG+AGG | + | chr1_1:6291678-6291697 | Msa0003740:CDS | 35.0% | |
| GGACTGAGTTTAACATTAGT+CGG | + | chr1_1:6291884-6291903 | Msa0003740:CDS | 35.0% | |
| AAAATCCCTTCTTGGCTATC+AGG | + | chr1_1:6290245-6290264 | Msa0003740:CDS | 40.0% | |
| TTCCCATTCAAAGACCATCT+AGG | + | chr1_1:6290336-6290355 | Msa0003740:CDS | 40.0% | |
| ACTAGGAGAAAATTCTGCAG+GGG | - | chr1_1:6290375-6290394 | None:intergenic | 40.0% | |
| GACTAGGAGAAAATTCTGCA+GGG | - | chr1_1:6290376-6290395 | None:intergenic | 40.0% | |
| !! | TCTTGAGTTTTGGTAGGACT+AGG | - | chr1_1:6290392-6290411 | None:intergenic | 40.0% |
| !! | GATAATGGTGTTGGCTTAGT+TGG | - | chr1_1:6290455-6290474 | None:intergenic | 40.0% |
| !! | ACTGACGATGATAATGGTGT+TGG | - | chr1_1:6290464-6290483 | None:intergenic | 40.0% |
| !! | TTCATGGTGTCATGATGAGA+GGG | - | chr1_1:6290611-6290630 | None:intergenic | 40.0% |
| ! | TCAGCAGAAGAATTTGGCTT+TGG | - | chr1_1:6290638-6290657 | None:intergenic | 40.0% |
| !! | GGCTCAATTTTAGAAACTCG+GGG | - | chr1_1:6290683-6290702 | None:intergenic | 40.0% |
| !!! | GATGCTCATTTTTTCGCTCT+AGG | - | chr1_1:6290823-6290842 | None:intergenic | 40.0% |
| !!! | GATGCTCATTTTTTCGCTCT+AGG | - | chr1_1:6290823-6290842 | None:intergenic | 40.0% |
| !!! | ACACCTCATTTTTTTGCTCC+GGG | - | chr1_1:6290913-6290932 | None:intergenic | 40.0% |
| ! | TATGCCGAGTGTTTTCTTCA+TGG | - | chr1_1:6290946-6290965 | None:intergenic | 40.0% |
| TCTACCTCGCAAGAAGAAAA+AGG | + | chr1_1:6290971-6290990 | Msa0003740:CDS | 40.0% | |
| CTACCTCGCAAGAAGAAAAA+GGG | + | chr1_1:6290972-6290991 | Msa0003740:CDS | 40.0% | |
| GAAGATGTCAATGTCTGATC+CGG | + | chr1_1:6290994-6291013 | Msa0003740:CDS | 40.0% | |
| !! | ATCTTTGGTTCTGCTTCACT+TGG | - | chr1_1:6291022-6291041 | None:intergenic | 40.0% |
| TTCAATGGGGACTTCATCTT+TGG | - | chr1_1:6291037-6291056 | None:intergenic | 40.0% | |
| ! | ACACGGGGATGATTTTCAAT+GGG | - | chr1_1:6291051-6291070 | None:intergenic | 40.0% |
| AAGATTCTCTGGTTGTGACA+CGG | - | chr1_1:6291068-6291087 | None:intergenic | 40.0% | |
| GTGTGCTTAGAAAGATTCTC+TGG | - | chr1_1:6291079-6291098 | None:intergenic | 40.0% | |
| AATAACACCAAAGTCCCCTT+TGG | + | chr1_1:6291135-6291154 | Msa0003740:CDS | 40.0% | |
| ! | CTTCCTTTGAGTTTCCAAAG+GGG | - | chr1_1:6291152-6291171 | None:intergenic | 40.0% |
| ! | GATGCTTTGGCATGTTGATT+CGG | - | chr1_1:6291262-6291281 | None:intergenic | 40.0% |
| !! | ACAAAGGATGAGAAGCATCA+TGG | + | chr1_1:6291292-6291311 | Msa0003740:CDS | 40.0% |
| TTTCCCACTAGAGTTTGATG+TGG | - | chr1_1:6291353-6291372 | None:intergenic | 40.0% | |
| TTCAGTGTCATAACACTGAC+TGG | + | chr1_1:6291535-6291554 | Msa0003740:CDS | 40.0% | |
| AAGGGTCAATCCACATTCAT+AGG | + | chr1_1:6291608-6291627 | Msa0003740:CDS | 40.0% | |
| AGGGTCAATCCACATTCATA+GGG | + | chr1_1:6291609-6291628 | Msa0003740:CDS | 40.0% | |
| TGTCACATCAATGCTCTCTT+CGG | - | chr1_1:6291650-6291669 | None:intergenic | 40.0% | |
| !! | AGCATTGATGTGACAACAGA+TGG | + | chr1_1:6291655-6291674 | Msa0003740:CDS | 40.0% |
| CAATGAGGAAGAAGACTCAA+TGG | + | chr1_1:6291693-6291712 | Msa0003740:CDS | 40.0% | |
| GAAGAAGACTCAATGGAACA+TGG | + | chr1_1:6291700-6291719 | Msa0003740:CDS | 40.0% | |
| TCAATCAATGAAAGAGACCC+TGG | + | chr1_1:6291790-6291809 | Msa0003740:CDS | 40.0% | |
| GAAGTGTAACTTGAACTCCA+GGG | - | chr1_1:6291810-6291829 | None:intergenic | 40.0% | |
| ! | ATGGTTTCTACAGGCTTTTG+TGG | - | chr1_1:6291832-6291851 | None:intergenic | 40.0% |
| ATAAAGACACTCACAATCGC+AGG | + | chr1_1:6291863-6291882 | Msa0003740:CDS | 40.0% | |
| AACTGAACTTGCGACCATAA+CGG | - | chr1_1:6291942-6291961 | None:intergenic | 40.0% | |
| AAAATCCCTTCTTGGCTATC+AGG | + | chr1_1:6290245-6290264 | Msa0003740:CDS | 40.0% | |
| TTCCCATTCAAAGACCATCT+AGG | + | chr1_1:6290336-6290355 | Msa0003740:CDS | 40.0% | |
| ACTAGGAGAAAATTCTGCAG+GGG | - | chr1_1:6290375-6290394 | None:intergenic | 40.0% | |
| GACTAGGAGAAAATTCTGCA+GGG | - | chr1_1:6290376-6290395 | None:intergenic | 40.0% | |
| !! | TCTTGAGTTTTGGTAGGACT+AGG | - | chr1_1:6290392-6290411 | None:intergenic | 40.0% |
| !! | GATAATGGTGTTGGCTTAGT+TGG | - | chr1_1:6290455-6290474 | None:intergenic | 40.0% |
| !! | ACTGACGATGATAATGGTGT+TGG | - | chr1_1:6290464-6290483 | None:intergenic | 40.0% |
| !! | TTCATGGTGTCATGATGAGA+GGG | - | chr1_1:6290611-6290630 | None:intergenic | 40.0% |
| ! | TCAGCAGAAGAATTTGGCTT+TGG | - | chr1_1:6290638-6290657 | None:intergenic | 40.0% |
| !! | GGCTCAATTTTAGAAACTCG+GGG | - | chr1_1:6290683-6290702 | None:intergenic | 40.0% |
| !!! | GATGCTCATTTTTTCGCTCT+AGG | - | chr1_1:6290823-6290842 | None:intergenic | 40.0% |
| !!! | GATGCTCATTTTTTCGCTCT+AGG | - | chr1_1:6290823-6290842 | None:intergenic | 40.0% |
| !!! | ACACCTCATTTTTTTGCTCC+GGG | - | chr1_1:6290913-6290932 | None:intergenic | 40.0% |
| ! | TATGCCGAGTGTTTTCTTCA+TGG | - | chr1_1:6290946-6290965 | None:intergenic | 40.0% |
| TCTACCTCGCAAGAAGAAAA+AGG | + | chr1_1:6290971-6290990 | Msa0003740:CDS | 40.0% | |
| CTACCTCGCAAGAAGAAAAA+GGG | + | chr1_1:6290972-6290991 | Msa0003740:CDS | 40.0% | |
| GAAGATGTCAATGTCTGATC+CGG | + | chr1_1:6290994-6291013 | Msa0003740:CDS | 40.0% | |
| !! | ATCTTTGGTTCTGCTTCACT+TGG | - | chr1_1:6291022-6291041 | None:intergenic | 40.0% |
| TTCAATGGGGACTTCATCTT+TGG | - | chr1_1:6291037-6291056 | None:intergenic | 40.0% | |
| ! | ACACGGGGATGATTTTCAAT+GGG | - | chr1_1:6291051-6291070 | None:intergenic | 40.0% |
| AAGATTCTCTGGTTGTGACA+CGG | - | chr1_1:6291068-6291087 | None:intergenic | 40.0% | |
| GTGTGCTTAGAAAGATTCTC+TGG | - | chr1_1:6291079-6291098 | None:intergenic | 40.0% | |
| AATAACACCAAAGTCCCCTT+TGG | + | chr1_1:6291135-6291154 | Msa0003740:CDS | 40.0% | |
| ! | CTTCCTTTGAGTTTCCAAAG+GGG | - | chr1_1:6291152-6291171 | None:intergenic | 40.0% |
| ! | GATGCTTTGGCATGTTGATT+CGG | - | chr1_1:6291262-6291281 | None:intergenic | 40.0% |
| !! | ACAAAGGATGAGAAGCATCA+TGG | + | chr1_1:6291292-6291311 | Msa0003740:CDS | 40.0% |
| TTTCCCACTAGAGTTTGATG+TGG | - | chr1_1:6291353-6291372 | None:intergenic | 40.0% | |
| TTCAGTGTCATAACACTGAC+TGG | + | chr1_1:6291535-6291554 | Msa0003740:CDS | 40.0% | |
| AAGGGTCAATCCACATTCAT+AGG | + | chr1_1:6291608-6291627 | Msa0003740:CDS | 40.0% | |
| AGGGTCAATCCACATTCATA+GGG | + | chr1_1:6291609-6291628 | Msa0003740:CDS | 40.0% | |
| TGTCACATCAATGCTCTCTT+CGG | - | chr1_1:6291650-6291669 | None:intergenic | 40.0% | |
| !! | AGCATTGATGTGACAACAGA+TGG | + | chr1_1:6291655-6291674 | Msa0003740:CDS | 40.0% |
| CAATGAGGAAGAAGACTCAA+TGG | + | chr1_1:6291693-6291712 | Msa0003740:CDS | 40.0% | |
| GAAGAAGACTCAATGGAACA+TGG | + | chr1_1:6291700-6291719 | Msa0003740:CDS | 40.0% | |
| TCAATCAATGAAAGAGACCC+TGG | + | chr1_1:6291790-6291809 | Msa0003740:CDS | 40.0% | |
| GAAGTGTAACTTGAACTCCA+GGG | - | chr1_1:6291810-6291829 | None:intergenic | 40.0% | |
| ! | ATGGTTTCTACAGGCTTTTG+TGG | - | chr1_1:6291832-6291851 | None:intergenic | 40.0% |
| ATAAAGACACTCACAATCGC+AGG | + | chr1_1:6291863-6291882 | Msa0003740:CDS | 40.0% | |
| AACTGAACTTGCGACCATAA+CGG | - | chr1_1:6291942-6291961 | None:intergenic | 40.0% | |
| GTGTTCCTGATAGCCAAGAA+GGG | - | chr1_1:6290253-6290272 | None:intergenic | 45.0% | |
| GGCCTAGATGGTCTTTGAAT+GGG | - | chr1_1:6290341-6290360 | None:intergenic | 45.0% | |
| GGACTAGGAGAAAATTCTGC+AGG | - | chr1_1:6290377-6290396 | None:intergenic | 45.0% | |
| ! | TGTAGCGGCTTCTTGAGTTT+TGG | - | chr1_1:6290402-6290421 | None:intergenic | 45.0% |
| !!! | AGAAGGTGGTTTTGAGTGAG+TGG | - | chr1_1:6290498-6290517 | None:intergenic | 45.0% |
| ! | TTTGGCGATGTTGATGGAGA+AGG | - | chr1_1:6290515-6290534 | None:intergenic | 45.0% |
| ! | ACATGGTTTGGCGATGTTGA+TGG | - | chr1_1:6290521-6290540 | None:intergenic | 45.0% |
| TGAGATGCTGCATGAGATGA+TGG | - | chr1_1:6290557-6290576 | None:intergenic | 45.0% | |
| ATCATCTCATGCAGCATCTC+AGG | + | chr1_1:6290556-6290575 | Msa0003740:CDS | 45.0% | |
| !! | TGAGGTTGAGTTGAGACAAC+AGG | - | chr1_1:6290584-6290603 | None:intergenic | 45.0% |
| !! | CTTCATGGTGTCATGATGAG+AGG | - | chr1_1:6290612-6290631 | None:intergenic | 45.0% |
| CTCTCATCATGACACCATGA+AGG | + | chr1_1:6290610-6290629 | Msa0003740:CDS | 45.0% | |
| !! | ATTTGGCTTTGGCACCTTCA+TGG | - | chr1_1:6290627-6290646 | None:intergenic | 45.0% |
| TTAGAAACTCGGGGTGATGT+AGG | - | chr1_1:6290674-6290693 | None:intergenic | 45.0% | |
| GCATCATCTACCATCTCCTT+TGG | + | chr1_1:6290754-6290773 | Msa0003740:CDS | 45.0% | |
| CGCTCTATATCCAAAGGAGA+TGG | - | chr1_1:6290767-6290786 | None:intergenic | 45.0% | |
| GCATTATCCACCATCTCCTT+CGG | + | chr1_1:6290796-6290815 | Msa0003740:CDS | 45.0% | |
| GCATCATCCACCATATCCTT+CGG | + | chr1_1:6290838-6290857 | Msa0003740:CDS | 45.0% | |
| !!! | CACCTCATTTTTTTGCTCCG+GGG | - | chr1_1:6290912-6290931 | None:intergenic | 45.0% |
| ! | CTTCCCTTTTTCTTCTTGCG+AGG | - | chr1_1:6290978-6290997 | None:intergenic | 45.0% |
| ! | CACGGGGATGATTTTCAATG+GGG | - | chr1_1:6291050-6291069 | None:intergenic | 45.0% |
| ! | GACACGGGGATGATTTTCAA+TGG | - | chr1_1:6291052-6291071 | None:intergenic | 45.0% |
| AGATTCTCTGGTTGTGACAC+GGG | - | chr1_1:6291067-6291086 | None:intergenic | 45.0% | |
| TGAGTTTCCAAAGGGGACTT+TGG | - | chr1_1:6291145-6291164 | None:intergenic | 45.0% | |
| ! | AGTCCCCTTTGGAAACTCAA+AGG | + | chr1_1:6291146-6291165 | Msa0003740:CDS | 45.0% |
| !! | CTTTGGCATGTTGATTCGGT+TGG | - | chr1_1:6291258-6291277 | None:intergenic | 45.0% |
| ! | CATGCCAAAGCATCTTCTTC+AGG | + | chr1_1:6291268-6291287 | Msa0003740:CDS | 45.0% |
| TGTGCCTGAAGAAGATGCTT+TGG | - | chr1_1:6291275-6291294 | None:intergenic | 45.0% | |
| AGCATCTTCTTCAGGCACAA+AGG | + | chr1_1:6291276-6291295 | Msa0003740:CDS | 45.0% | |
| !! | GGAAAGGCACCAATGCAAAA+AGG | + | chr1_1:6291433-6291452 | Msa0003740:CDS | 45.0% |
| AGTGCAACCAACACAACCTA+TGG | + | chr1_1:6291501-6291520 | Msa0003740:CDS | 45.0% | |
| TTGTCCTCCATAGGTTGTGT+TGG | - | chr1_1:6291511-6291530 | None:intergenic | 45.0% | |
| ! | ACACTGACTGGTGACAATAG+AGG | + | chr1_1:6291547-6291566 | Msa0003740:CDS | 45.0% |
| AGAGGAGCAACAATGCATGT+TGG | + | chr1_1:6291565-6291584 | Msa0003740:CDS | 45.0% | |
| TCTTGTAGGCCCTATGAATG+TGG | - | chr1_1:6291621-6291640 | None:intergenic | 45.0% | |
| GATGTGACAACAGATGGAGA+AGG | + | chr1_1:6291661-6291680 | Msa0003740:CDS | 45.0% | |
| AGACTCAATGGAACATGGTG+AGG | + | chr1_1:6291705-6291724 | Msa0003740:CDS | 45.0% | |
| TCAATGGAACATGGTGAGGT+CGG | + | chr1_1:6291709-6291728 | Msa0003740:CDS | 45.0% | |
| ! | GGAAGTGTAACTTGAACTCC+AGG | - | chr1_1:6291811-6291830 | None:intergenic | 45.0% |
| !! | TCGTGGTTGATGGTTTCTAC+AGG | - | chr1_1:6291841-6291860 | None:intergenic | 45.0% |
| GTCTTTATCGTCGTGGTTGA+TGG | - | chr1_1:6291851-6291870 | None:intergenic | 45.0% | |
| TGTGAGTGTCTTTATCGTCG+TGG | - | chr1_1:6291858-6291877 | None:intergenic | 45.0% | |
| TATGGTCGCAAGTTCAGTTG+TGG | + | chr1_1:6291943-6291962 | Msa0003740:CDS | 45.0% | |
| GTGTTCCTGATAGCCAAGAA+GGG | - | chr1_1:6290253-6290272 | None:intergenic | 45.0% | |
| GGCCTAGATGGTCTTTGAAT+GGG | - | chr1_1:6290341-6290360 | None:intergenic | 45.0% | |
| GGACTAGGAGAAAATTCTGC+AGG | - | chr1_1:6290377-6290396 | None:intergenic | 45.0% | |
| ! | TGTAGCGGCTTCTTGAGTTT+TGG | - | chr1_1:6290402-6290421 | None:intergenic | 45.0% |
| !!! | AGAAGGTGGTTTTGAGTGAG+TGG | - | chr1_1:6290498-6290517 | None:intergenic | 45.0% |
| ! | TTTGGCGATGTTGATGGAGA+AGG | - | chr1_1:6290515-6290534 | None:intergenic | 45.0% |
| ! | ACATGGTTTGGCGATGTTGA+TGG | - | chr1_1:6290521-6290540 | None:intergenic | 45.0% |
| TGAGATGCTGCATGAGATGA+TGG | - | chr1_1:6290557-6290576 | None:intergenic | 45.0% | |
| ATCATCTCATGCAGCATCTC+AGG | + | chr1_1:6290556-6290575 | Msa0003740:CDS | 45.0% | |
| !! | TGAGGTTGAGTTGAGACAAC+AGG | - | chr1_1:6290584-6290603 | None:intergenic | 45.0% |
| !! | CTTCATGGTGTCATGATGAG+AGG | - | chr1_1:6290612-6290631 | None:intergenic | 45.0% |
| CTCTCATCATGACACCATGA+AGG | + | chr1_1:6290610-6290629 | Msa0003740:CDS | 45.0% | |
| !! | ATTTGGCTTTGGCACCTTCA+TGG | - | chr1_1:6290627-6290646 | None:intergenic | 45.0% |
| TTAGAAACTCGGGGTGATGT+AGG | - | chr1_1:6290674-6290693 | None:intergenic | 45.0% | |
| GCATCATCTACCATCTCCTT+TGG | + | chr1_1:6290754-6290773 | Msa0003740:CDS | 45.0% | |
| CGCTCTATATCCAAAGGAGA+TGG | - | chr1_1:6290767-6290786 | None:intergenic | 45.0% | |
| GCATTATCCACCATCTCCTT+CGG | + | chr1_1:6290796-6290815 | Msa0003740:CDS | 45.0% | |
| GCATCATCCACCATATCCTT+CGG | + | chr1_1:6290838-6290857 | Msa0003740:CDS | 45.0% | |
| !!! | CACCTCATTTTTTTGCTCCG+GGG | - | chr1_1:6290912-6290931 | None:intergenic | 45.0% |
| ! | CTTCCCTTTTTCTTCTTGCG+AGG | - | chr1_1:6290978-6290997 | None:intergenic | 45.0% |
| ! | CACGGGGATGATTTTCAATG+GGG | - | chr1_1:6291050-6291069 | None:intergenic | 45.0% |
| ! | GACACGGGGATGATTTTCAA+TGG | - | chr1_1:6291052-6291071 | None:intergenic | 45.0% |
| AGATTCTCTGGTTGTGACAC+GGG | - | chr1_1:6291067-6291086 | None:intergenic | 45.0% | |
| TGAGTTTCCAAAGGGGACTT+TGG | - | chr1_1:6291145-6291164 | None:intergenic | 45.0% | |
| ! | AGTCCCCTTTGGAAACTCAA+AGG | + | chr1_1:6291146-6291165 | Msa0003740:CDS | 45.0% |
| !! | CTTTGGCATGTTGATTCGGT+TGG | - | chr1_1:6291258-6291277 | None:intergenic | 45.0% |
| ! | CATGCCAAAGCATCTTCTTC+AGG | + | chr1_1:6291268-6291287 | Msa0003740:CDS | 45.0% |
| TGTGCCTGAAGAAGATGCTT+TGG | - | chr1_1:6291275-6291294 | None:intergenic | 45.0% | |
| AGCATCTTCTTCAGGCACAA+AGG | + | chr1_1:6291276-6291295 | Msa0003740:CDS | 45.0% | |
| !! | GGAAAGGCACCAATGCAAAA+AGG | + | chr1_1:6291433-6291452 | Msa0003740:CDS | 45.0% |
| AGTGCAACCAACACAACCTA+TGG | + | chr1_1:6291501-6291520 | Msa0003740:CDS | 45.0% | |
| TTGTCCTCCATAGGTTGTGT+TGG | - | chr1_1:6291511-6291530 | None:intergenic | 45.0% | |
| ! | ACACTGACTGGTGACAATAG+AGG | + | chr1_1:6291547-6291566 | Msa0003740:CDS | 45.0% |
| AGAGGAGCAACAATGCATGT+TGG | + | chr1_1:6291565-6291584 | Msa0003740:CDS | 45.0% | |
| TCTTGTAGGCCCTATGAATG+TGG | - | chr1_1:6291621-6291640 | None:intergenic | 45.0% | |
| GATGTGACAACAGATGGAGA+AGG | + | chr1_1:6291661-6291680 | Msa0003740:CDS | 45.0% | |
| AGACTCAATGGAACATGGTG+AGG | + | chr1_1:6291705-6291724 | Msa0003740:CDS | 45.0% | |
| TCAATGGAACATGGTGAGGT+CGG | + | chr1_1:6291709-6291728 | Msa0003740:CDS | 45.0% | |
| ! | GGAAGTGTAACTTGAACTCC+AGG | - | chr1_1:6291811-6291830 | None:intergenic | 45.0% |
| !! | TCGTGGTTGATGGTTTCTAC+AGG | - | chr1_1:6291841-6291860 | None:intergenic | 45.0% |
| GTCTTTATCGTCGTGGTTGA+TGG | - | chr1_1:6291851-6291870 | None:intergenic | 45.0% | |
| TGTGAGTGTCTTTATCGTCG+TGG | - | chr1_1:6291858-6291877 | None:intergenic | 45.0% | |
| TATGGTCGCAAGTTCAGTTG+TGG | + | chr1_1:6291943-6291962 | Msa0003740:CDS | 45.0% | |
| GGTGTTCCTGATAGCCAAGA+AGG | - | chr1_1:6290254-6290273 | None:intergenic | 50.0% | |
| !! | GGACGACGAGACATTGATTC+AGG | - | chr1_1:6290275-6290294 | None:intergenic | 50.0% |
| GGGCCTAGATGGTCTTTGAA+TGG | - | chr1_1:6290342-6290361 | None:intergenic | 50.0% | |
| GTTATGAGAGAGGGCCTAGA+TGG | - | chr1_1:6290353-6290372 | None:intergenic | 50.0% | |
| TCTGCAGGGGTTATGAGAGA+GGG | - | chr1_1:6290362-6290381 | None:intergenic | 50.0% | |
| TTCTGCAGGGGTTATGAGAG+AGG | - | chr1_1:6290363-6290382 | None:intergenic | 50.0% | |
| !! | GCGGCTTCTTGAGTTTTGGT+AGG | - | chr1_1:6290398-6290417 | None:intergenic | 50.0% |
| !! | TGAGGCGGTGAATGGTTTTG+AGG | - | chr1_1:6290431-6290450 | None:intergenic | 50.0% |
| GGTGGAGAGTTGACATGGTT+TGG | - | chr1_1:6290533-6290552 | None:intergenic | 50.0% | |
| !! | ATGGTGGTGGAGAGTTGACA+TGG | - | chr1_1:6290538-6290557 | None:intergenic | 50.0% |
| ! | GATGCTGCATGAGATGATGG+TGG | - | chr1_1:6290554-6290573 | None:intergenic | 50.0% |
| TCATGATGAGAGGGAGACTG+AGG | - | chr1_1:6290602-6290621 | None:intergenic | 50.0% | |
| !!! | TTTTTTCGCTCTAGGGCCGA+AGG | - | chr1_1:6290815-6290834 | None:intergenic | 50.0% |
| !!! | TTTTTTCGCTCTAGGGCCGA+AGG | - | chr1_1:6290815-6290834 | None:intergenic | 50.0% |
| !!! | ATTTTTTTGCTCCGGGGTCC+AGG | - | chr1_1:6290906-6290925 | None:intergenic | 50.0% |
| GACCCCGGAGCAAAAAAATG+AGG | + | chr1_1:6290907-6290926 | Msa0003740:CDS | 50.0% | |
| GGTTCTGCTTCACTTGGAAC+CGG | - | chr1_1:6291016-6291035 | None:intergenic | 50.0% | |
| GATTCTCTGGTTGTGACACG+GGG | - | chr1_1:6291066-6291085 | None:intergenic | 50.0% | |
| AAGAATTGTCCCATCGAGCG+AGG | + | chr1_1:6291387-6291406 | Msa0003740:CDS | 50.0% | |
| TTTCCCTTTCCTCGCTCGAT+GGG | - | chr1_1:6291399-6291418 | None:intergenic | 50.0% | |
| ! | TTTTCCCTTTCCTCGCTCGA+TGG | - | chr1_1:6291400-6291419 | None:intergenic | 50.0% |
| ATCGAGCGAGGAAAGGGAAA+AGG | + | chr1_1:6291399-6291418 | Msa0003740:CDS | 50.0% | |
| !! | AGGTTGTGTTGGTTGCACTG+AGG | - | chr1_1:6291500-6291519 | None:intergenic | 50.0% |
| GCAACCAACACAACCTATGG+AGG | + | chr1_1:6291504-6291523 | Msa0003740:CDS | 50.0% | |
| ! | CTCTTCGGACTCAGTCTTGT+AGG | - | chr1_1:6291635-6291654 | None:intergenic | 50.0% |
| CAATGGAACATGGTGAGGTC+GGG | + | chr1_1:6291710-6291729 | Msa0003740:CDS | 50.0% | |
| GGTGTTCCTGATAGCCAAGA+AGG | - | chr1_1:6290254-6290273 | None:intergenic | 50.0% | |
| !! | GGACGACGAGACATTGATTC+AGG | - | chr1_1:6290275-6290294 | None:intergenic | 50.0% |
| GGGCCTAGATGGTCTTTGAA+TGG | - | chr1_1:6290342-6290361 | None:intergenic | 50.0% | |
| GTTATGAGAGAGGGCCTAGA+TGG | - | chr1_1:6290353-6290372 | None:intergenic | 50.0% | |
| TCTGCAGGGGTTATGAGAGA+GGG | - | chr1_1:6290362-6290381 | None:intergenic | 50.0% | |
| TTCTGCAGGGGTTATGAGAG+AGG | - | chr1_1:6290363-6290382 | None:intergenic | 50.0% | |
| !! | GCGGCTTCTTGAGTTTTGGT+AGG | - | chr1_1:6290398-6290417 | None:intergenic | 50.0% |
| !! | TGAGGCGGTGAATGGTTTTG+AGG | - | chr1_1:6290431-6290450 | None:intergenic | 50.0% |
| GGTGGAGAGTTGACATGGTT+TGG | - | chr1_1:6290533-6290552 | None:intergenic | 50.0% | |
| !! | ATGGTGGTGGAGAGTTGACA+TGG | - | chr1_1:6290538-6290557 | None:intergenic | 50.0% |
| ! | GATGCTGCATGAGATGATGG+TGG | - | chr1_1:6290554-6290573 | None:intergenic | 50.0% |
| TCATGATGAGAGGGAGACTG+AGG | - | chr1_1:6290602-6290621 | None:intergenic | 50.0% | |
| !!! | TTTTTTCGCTCTAGGGCCGA+AGG | - | chr1_1:6290815-6290834 | None:intergenic | 50.0% |
| !!! | TTTTTTCGCTCTAGGGCCGA+AGG | - | chr1_1:6290815-6290834 | None:intergenic | 50.0% |
| !!! | ATTTTTTTGCTCCGGGGTCC+AGG | - | chr1_1:6290906-6290925 | None:intergenic | 50.0% |
| GACCCCGGAGCAAAAAAATG+AGG | + | chr1_1:6290907-6290926 | Msa0003740:CDS | 50.0% | |
| GGTTCTGCTTCACTTGGAAC+CGG | - | chr1_1:6291016-6291035 | None:intergenic | 50.0% | |
| GATTCTCTGGTTGTGACACG+GGG | - | chr1_1:6291066-6291085 | None:intergenic | 50.0% | |
| AAGAATTGTCCCATCGAGCG+AGG | + | chr1_1:6291387-6291406 | Msa0003740:CDS | 50.0% | |
| TTTCCCTTTCCTCGCTCGAT+GGG | - | chr1_1:6291399-6291418 | None:intergenic | 50.0% | |
| ! | TTTTCCCTTTCCTCGCTCGA+TGG | - | chr1_1:6291400-6291419 | None:intergenic | 50.0% |
| ATCGAGCGAGGAAAGGGAAA+AGG | + | chr1_1:6291399-6291418 | Msa0003740:CDS | 50.0% | |
| !! | AGGTTGTGTTGGTTGCACTG+AGG | - | chr1_1:6291500-6291519 | None:intergenic | 50.0% |
| GCAACCAACACAACCTATGG+AGG | + | chr1_1:6291504-6291523 | Msa0003740:CDS | 50.0% | |
| ! | CTCTTCGGACTCAGTCTTGT+AGG | - | chr1_1:6291635-6291654 | None:intergenic | 50.0% |
| CAATGGAACATGGTGAGGTC+GGG | + | chr1_1:6291710-6291729 | Msa0003740:CDS | 50.0% | |
| TAGTTGGGTGAGGCGGTGAA+TGG | - | chr1_1:6290439-6290458 | None:intergenic | 55.0% | |
| ! | GTTGGCTTAGTTGGGTGAGG+CGG | - | chr1_1:6290446-6290465 | None:intergenic | 55.0% |
| !! | GGTGTTGGCTTAGTTGGGTG+AGG | - | chr1_1:6290449-6290468 | None:intergenic | 55.0% |
| ! | GGCGATGTTGATGGAGAAGG+TGG | - | chr1_1:6290512-6290531 | None:intergenic | 55.0% |
| !! | GCTGCATGAGATGATGGTGG+TGG | - | chr1_1:6290551-6290570 | None:intergenic | 55.0% |
| GGTGGATGATGCTGAGAAGC+TGG | - | chr1_1:6290704-6290723 | None:intergenic | 55.0% | |
| !! | GCATCATCCACCGTCGACTT+TGG | + | chr1_1:6290712-6290731 | Msa0003740:CDS | 55.0% |
| ! | TCTAGGGCCGAAGGATATGG+TGG | - | chr1_1:6290848-6290867 | None:intergenic | 55.0% |
| AGCATCGTCCACCATCTCCT+TGG | + | chr1_1:6290879-6290898 | Msa0003740:CDS | 55.0% | |
| TTGTCCCATCGAGCGAGGAA+AGG | + | chr1_1:6291392-6291411 | Msa0003740:CDS | 55.0% | |
| TGTCCCATCGAGCGAGGAAA+GGG | + | chr1_1:6291393-6291412 | Msa0003740:CDS | 55.0% | |
| CATAACGGCGAACTGTTGGC+TGG | - | chr1_1:6291927-6291946 | None:intergenic | 55.0% | |
| CAGCCAACAGTTCGCCGTTA+TGG | + | chr1_1:6291925-6291944 | Msa0003740:CDS | 55.0% | |
| CGACCATAACGGCGAACTGT+TGG | - | chr1_1:6291931-6291950 | None:intergenic | 55.0% | |
| TAGTTGGGTGAGGCGGTGAA+TGG | - | chr1_1:6290439-6290458 | None:intergenic | 55.0% | |
| ! | GTTGGCTTAGTTGGGTGAGG+CGG | - | chr1_1:6290446-6290465 | None:intergenic | 55.0% |
| !! | GGTGTTGGCTTAGTTGGGTG+AGG | - | chr1_1:6290449-6290468 | None:intergenic | 55.0% |
| ! | GGCGATGTTGATGGAGAAGG+TGG | - | chr1_1:6290512-6290531 | None:intergenic | 55.0% |
| !! | GCTGCATGAGATGATGGTGG+TGG | - | chr1_1:6290551-6290570 | None:intergenic | 55.0% |
| GGTGGATGATGCTGAGAAGC+TGG | - | chr1_1:6290704-6290723 | None:intergenic | 55.0% | |
| !! | GCATCATCCACCGTCGACTT+TGG | + | chr1_1:6290712-6290731 | Msa0003740:CDS | 55.0% |
| ! | TCTAGGGCCGAAGGATATGG+TGG | - | chr1_1:6290848-6290867 | None:intergenic | 55.0% |
| AGCATCGTCCACCATCTCCT+TGG | + | chr1_1:6290879-6290898 | Msa0003740:CDS | 55.0% | |
| TTGTCCCATCGAGCGAGGAA+AGG | + | chr1_1:6291392-6291411 | Msa0003740:CDS | 55.0% | |
| TGTCCCATCGAGCGAGGAAA+GGG | + | chr1_1:6291393-6291412 | Msa0003740:CDS | 55.0% | |
| CATAACGGCGAACTGTTGGC+TGG | - | chr1_1:6291927-6291946 | None:intergenic | 55.0% | |
| CAGCCAACAGTTCGCCGTTA+TGG | + | chr1_1:6291925-6291944 | Msa0003740:CDS | 55.0% | |
| CGACCATAACGGCGAACTGT+TGG | - | chr1_1:6291931-6291950 | None:intergenic | 55.0% | |
| !! | TGCTCTGGGGCCAAAGTCGA+CGG | - | chr1_1:6290725-6290744 | None:intergenic | 60.0% |
| ! | TCTAGGGCCGAAGGAGATGG+TGG | - | chr1_1:6290806-6290825 | None:intergenic | 60.0% |
| !! | CGCTCTAGGGCCGAAGGATA+TGG | - | chr1_1:6290851-6290870 | None:intergenic | 60.0% |
| GTCCACCATCTCCTTGGACC+TGG | + | chr1_1:6290885-6290904 | Msa0003740:CDS | 60.0% | |
| GTCCAGGTCCAAGGAGATGG+TGG | - | chr1_1:6290890-6290909 | None:intergenic | 60.0% | |
| ATCTCCTTGGACCTGGACCC+CGG | + | chr1_1:6290892-6290911 | Msa0003740:CDS | 60.0% | |
| !! | TGCTCTGGGGCCAAAGTCGA+CGG | - | chr1_1:6290725-6290744 | None:intergenic | 60.0% |
| ! | TCTAGGGCCGAAGGAGATGG+TGG | - | chr1_1:6290806-6290825 | None:intergenic | 60.0% |
| !! | CGCTCTAGGGCCGAAGGATA+TGG | - | chr1_1:6290851-6290870 | None:intergenic | 60.0% |
| GTCCACCATCTCCTTGGACC+TGG | + | chr1_1:6290885-6290904 | Msa0003740:CDS | 60.0% | |
| GTCCAGGTCCAAGGAGATGG+TGG | - | chr1_1:6290890-6290909 | None:intergenic | 60.0% | |
| ATCTCCTTGGACCTGGACCC+CGG | + | chr1_1:6290892-6290911 | Msa0003740:CDS | 60.0% | |
| ! | TCTGGGGCCAAAGTCGACGG+TGG | - | chr1_1:6290722-6290741 | None:intergenic | 65.0% |
| !! | CGCTCTAGGGCCGAAGGAGA+TGG | - | chr1_1:6290809-6290828 | None:intergenic | 65.0% |
| GGGGTCCAGGTCCAAGGAGA+TGG | - | chr1_1:6290893-6290912 | None:intergenic | 65.0% | |
| GGAACATGGTGAGGTCGGGC+AGG | + | chr1_1:6291714-6291733 | Msa0003740:CDS | 65.0% | |
| ! | TCTGGGGCCAAAGTCGACGG+TGG | - | chr1_1:6290722-6290741 | None:intergenic | 65.0% |
| !! | CGCTCTAGGGCCGAAGGAGA+TGG | - | chr1_1:6290809-6290828 | None:intergenic | 65.0% |
| GGGGTCCAGGTCCAAGGAGA+TGG | - | chr1_1:6290893-6290912 | None:intergenic | 65.0% | |
| GGAACATGGTGAGGTCGGGC+AGG | + | chr1_1:6291714-6291733 | Msa0003740:CDS | 65.0% | |
| TGCTCCGGGGTCCAGGTCCA+AGG | - | chr1_1:6290899-6290918 | None:intergenic | 70.0% | |
| TGCTCCGGGGTCCAGGTCCA+AGG | - | chr1_1:6290899-6290918 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 6290215 | 6291990 | 6290215 | ID=Msa0003740;Name=Msa0003740 |
| chr1_1 | mRNA | 6290215 | 6291990 | 6290215 | ID=Msa0003740-mRNA-1;Parent=Msa0003740;Name=Msa0003740-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|591 |
| chr1_1 | exon | 6290215 | 6291990 | 6290215 | ID=Msa0003740-mRNA-1:exon:2062;Parent=Msa0003740-mRNA-1 |
| chr1_1 | CDS | 6290215 | 6291990 | 6290215 | ID=Msa0003740-mRNA-1:cds;Parent=Msa0003740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
