AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0182400

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0182400 MtrunA17_Chr1g0209261 99.029 206 2 0 1 206 1 206 3.86e-152 420
Msa0182400 MtrunA17_Chr8g0376101 46.939 196 100 1 13 204 26 221 5.95e-64 197
Msa0182400 MtrunA17_Chr8g0387631 39.303 201 116 2 10 204 58 258 9.75e-50 162
Msa0182400 MtrunA17_Chr1g0202401 40.415 193 109 2 10 196 51 243 1.88e-44 148
Msa0182400 MtrunA17_Chr8g0348131 38.235 204 116 3 10 203 62 265 3.05e-44 148
Msa0182400 MtrunA17_Chr3g0095441 35.484 186 114 2 10 189 43 228 2.42e-36 127
Msa0182400 MtrunA17_Chr5g0442361 35.678 199 116 4 10 198 42 238 8.23e-36 125
Msa0182400 MtrunA17_Chr3g0108661 34.132 167 106 1 14 176 53 219 7.59e-27 102
Msa0182400 MtrunA17_Chr4g0005701 29.592 196 134 1 13 204 12 207 1.01e-21 88.6
Msa0182400 MtrunA17_Chr1g0208091 28.718 195 135 1 14 204 8 202 1.87e-19 82.4
Msa0182400 MtrunA17_Chr6g0453331 28.649 185 128 1 24 204 13 197 1.60e-18 79.7
Msa0182400 MtrunA17_Chr5g0402811 20.942 191 147 1 20 206 29 219 8.03e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0182400 AT3G18260.1 45.178 197 104 1 13 205 28 224 1.11e-59 187
Msa0182400 AT1G68230.2 45.833 192 102 1 15 204 22 213 2.64e-57 180
Msa0182400 AT4G11220.1 39.303 201 116 2 10 204 69 269 4.56e-52 169
Msa0182400 AT4G23630.1 38.806 201 117 2 10 204 73 273 1.62e-51 167
Msa0182400 AT4G23630.2 38.806 201 117 2 10 204 73 273 1.62e-51 167
Msa0182400 AT2G46170.1 38.500 200 117 2 10 203 52 251 1.93e-47 156
Msa0182400 AT5G41600.1 38.537 205 116 3 10 204 52 256 5.48e-46 152
Msa0182400 AT3G61560.1 36.500 200 121 2 10 203 52 251 3.75e-42 143
Msa0182400 AT3G61560.2 36.500 200 121 2 10 203 52 251 3.75e-42 143
Msa0182400 AT1G64090.1 35.678 199 118 3 10 198 48 246 5.64e-42 142
Msa0182400 AT1G64090.2 32.870 216 119 4 10 199 48 263 5.28e-38 132
Msa0182400 AT3G10260.1 32.143 196 129 1 13 204 50 245 2.25e-35 125
Msa0182400 AT3G10260.2 32.143 196 129 1 13 204 50 245 2.25e-35 125
Msa0182400 AT1G68230.1 46.715 137 71 1 15 149 22 158 2.47e-35 122
Msa0182400 AT3G10260.3 32.143 196 129 1 13 204 70 265 4.49e-35 125
Msa0182400 AT4G01230.2 35.784 204 120 4 2 197 44 244 5.71e-35 124
Msa0182400 AT4G01230.1 34.804 204 120 5 2 197 44 242 6.80e-32 116
Msa0182400 AT3G61560.3 37.671 146 85 2 10 149 52 197 4.37e-28 105
Msa0182400 AT2G46170.2 37.795 127 73 2 10 130 52 178 4.10e-24 94.7
Msa0182400 AT3G10915.2 25.854 205 146 2 5 203 20 224 2.33e-23 93.6
Msa0182400 AT3G10915.7 26.000 200 142 2 10 203 50 249 3.04e-23 94.0
Msa0182400 AT3G19460.1 28.141 199 123 5 16 206 14 200 5.14e-23 92.0
Msa0182400 AT3G19460.5 28.141 199 123 5 16 206 14 200 5.14e-23 92.0
Msa0182400 AT3G19460.4 28.141 199 123 5 16 206 14 200 5.14e-23 92.0
Msa0182400 AT3G10915.4 25.728 206 146 3 5 203 20 225 8.23e-22 89.4
Msa0182400 AT2G15280.1 24.742 194 142 1 15 204 5 198 2.41e-20 85.1
Msa0182400 AT3G10915.3 24.044 183 135 1 25 203 9 191 3.37e-18 79.3
Msa0182400 AT3G10915.6 24.044 183 135 1 25 203 10 192 3.86e-18 79.0
Msa0182400 AT3G19460.3 25.431 232 121 6 16 206 14 234 2.08e-17 77.8
Msa0182400 AT3G19460.7 25.431 232 121 6 16 206 14 234 2.08e-17 77.8
Msa0182400 AT3G10915.5 23.246 228 146 4 5 203 20 247 7.17e-17 76.6
Msa0182400 AT3G54120.1 29.545 176 115 3 3 172 1 173 9.60e-17 75.5
Msa0182400 AT2G01240.1 28.889 135 94 2 69 202 1 134 3.06e-14 67.4
Msa0182400 AT3G19460.2 24.554 224 117 6 24 206 6 218 1.09e-13 67.8
Msa0182400 AT3G19460.6 24.554 224 117 6 24 206 6 218 1.09e-13 67.8

Find 64 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATGCTCATTCTCTTTATT+TGG 0.147832 1_4:-70882365 Msa0182400:CDS
TCCAATCAACCTGGTTTATT+TGG 0.194638 1_4:-70883393 Msa0182400:CDS
GGTACATCACATATATTTAT+TGG 0.212629 1_4:-70883530 Msa0182400:five_prime_UTR
TGTTGATTTGATTAATTTCT+TGG 0.229748 1_4:-70883569 Msa0182400:five_prime_UTR
GAAGAGATTGTTCAACAAAT+TGG 0.245195 1_4:-70881503 Msa0182400:CDS
TCATACCGCTCATACATAAT+TGG 0.314636 1_4:+70881568 None:intergenic
CTATGGATCATGTCTACTAT+TGG 0.332384 1_4:-70881735 Msa0182400:CDS
ACCAAATAAACCAGGTTGAT+TGG 0.341184 1_4:+70883392 None:intergenic
ATGAATCTAACGGTAGAATC+TGG 0.349110 1_4:+70882177 None:intergenic
TTCAGACAATAGCTGGTCTA+TGG 0.360102 1_4:-70881752 Msa0182400:intron
ATTATTCATTTACATGCTTA+AGG 0.367372 1_4:+70881315 None:intergenic
TGGATTCTACAGTTCTCAAT+AGG 0.367654 1_4:-70881483 Msa0182400:CDS
ATCTGCTTGAAGCCAAATAA+TGG 0.371076 1_4:+70881348 None:intergenic
GGAACGGATTGGCATGACTA+TGG 0.391617 1_4:+70883413 None:intergenic
TAGGAATCATTAACTTGGTT+TGG 0.393341 1_4:-70883479 Msa0182400:five_prime_UTR
ATTTCAAAATCATAGATATC+AGG 0.404128 1_4:+70882201 None:intergenic
TTTATTTGGTATAATGCAGC+TGG 0.406398 1_4:-70882351 Msa0182400:CDS
GCATGAAACATAACAGTGTT+AGG 0.414970 1_4:-70883498 Msa0182400:five_prime_UTR
TGAACAATCTCTTCACGTCT+TGG 0.421418 1_4:+70881512 None:intergenic
AAATAAAGAGAATGAGCATA+AGG 0.427457 1_4:+70882367 None:intergenic
ATTGAATTTCAGACAATAGC+TGG 0.451267 1_4:-70881759 Msa0182400:intron
CTTGGTTTCAAAGTCTCCAT+TGG 0.486090 1_4:-70883551 Msa0182400:five_prime_UTR
AATAAAGAGAATGAGCATAA+GGG 0.486688 1_4:+70882368 None:intergenic
AGACCACTTCACGCAGTCCT+TGG 0.495322 1_4:-70883369 Msa0182400:CDS
CCAGGTTGATTGGAACGGAT+TGG 0.508121 1_4:+70883402 None:intergenic
CCACTTCACGCAGTCCTTGG+TGG 0.509588 1_4:-70883366 Msa0182400:CDS
GAAAACAACGGCAGCAATTG+TGG 0.515778 1_4:-70882469 Msa0182400:CDS
ATGCAGCTGGATTAATCACT+TGG 0.517496 1_4:-70882338 Msa0182400:intron
AAAAGTTCAACTTGTTCTTG+AGG 0.520276 1_4:-70882149 Msa0182400:CDS
CAGTTCTCAATAGGATTCCA+AGG 0.520634 1_4:-70881474 Msa0182400:CDS
TGAATCTAACGGTAGAATCT+GGG 0.523175 1_4:+70882178 None:intergenic
AGATCTTAGATTCTTCTTTG+TGG 0.523221 1_4:-70882100 Msa0182400:intron
ACAACGGCAGCAATTGTGGC+TGG 0.528525 1_4:-70882465 Msa0182400:CDS
TTGTATCGAGAGGTAAGGTA+TGG 0.539319 1_4:+70883596 None:intergenic
CCAATCCGTTCCAATCAACC+TGG 0.539807 1_4:-70883402 Msa0182400:CDS
TTCATTTACATGCTTAAGGT+AGG 0.543763 1_4:+70881319 None:intergenic
ACATAATTGGAAGTGTCACC+AGG 0.546032 1_4:+70881581 None:intergenic
GTGGACTATCTAGCAAGTAA+AGG 0.551485 1_4:-70881538 Msa0182400:CDS
CAATGTATCTTAATCATGTG+TGG 0.554111 1_4:-70883658 Msa0182400:five_prime_UTR
CTTAATCATGTGTGGGCACG+AGG 0.559547 1_4:-70883650 Msa0182400:five_prime_UTR
AGTGTTAGGAATCATTAACT+TGG 0.560560 1_4:-70883484 Msa0182400:five_prime_UTR
AAATATATGTGATGTACCAA+TGG 0.562809 1_4:+70883535 None:intergenic
CACACATGATTAAGATACAT+TGG 0.564018 1_4:+70883659 None:intergenic
GAATGAGCATAAGGGCTATG+AGG 0.566119 1_4:+70882376 None:intergenic
GCATAAGGGCTATGAGGATG+TGG 0.569062 1_4:+70882382 None:intergenic
CCACCAAGGACTGCGTGAAG+TGG 0.572676 1_4:+70883366 None:intergenic
ATAAACCAGGTTGATTGGAA+CGG 0.576581 1_4:+70883397 None:intergenic
CAGTTGCTGATATCTTGCTA+TGG 0.577932 1_4:-70882500 Msa0182400:CDS
GTTATGTTTCATGCGCATTG+AGG 0.578219 1_4:+70883507 None:intergenic
AATGTATCTTAATCATGTGT+GGG 0.578843 1_4:-70883657 Msa0182400:five_prime_UTR
CGGAGAAGATATAAAATCAT+CGG 0.580814 1_4:+70881428 None:intergenic
GGTTTGGTTTCTCTTTGAAG+TGG 0.581573 1_4:-70882433 Msa0182400:CDS
AACATTTGTATCGAGAGGTA+AGG 0.594348 1_4:+70883591 None:intergenic
AGTTCTCAATAGGATTCCAA+GGG 0.601630 1_4:-70881473 Msa0182400:CDS
GGTAAGGTATGGCTTTAGCA+TGG 0.612064 1_4:+70883607 None:intergenic
CACTTCCAATTATGTATGAG+CGG 0.613668 1_4:-70881573 Msa0182400:CDS
CTTCACGCAGTCCTTGGTGG+AGG 0.617691 1_4:-70883363 Msa0182400:CDS
TCAACAACATTTGTATCGAG+AGG 0.636340 1_4:+70883586 None:intergenic
GTATGAGCGGTATGAACATG+AGG 0.680175 1_4:-70881560 Msa0182400:CDS
TCTTACTCTTTCCTCCACCA+AGG 0.691240 1_4:+70883352 None:intergenic
AGTGGTCTACCAAATAAACC+AGG 0.692119 1_4:+70883384 None:intergenic
ATGGAAAGACATGAAAACAA+CGG 0.698215 1_4:-70882481 Msa0182400:CDS
TGAGCGGTATGAACATGAGG+TGG 0.701805 1_4:-70881557 Msa0182400:CDS
GTTCTCAATAGGATTCCAAG+GGG 0.759037 1_4:-70881472 Msa0182400:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGATAGTAAATATTTAAT+AGG - chr1_4:70881678-70881697 Msa0182400:intron 10.0%
!! ATATTTAGAAATTAGATTAA+GGG + chr1_4:70881740-70881759 None:intergenic 10.0%
!! TATATTTAGAAATTAGATTA+AGG + chr1_4:70881741-70881760 None:intergenic 10.0%
!!! AATAACTTTTAAAAATAAGA+GGG + chr1_4:70881966-70881985 None:intergenic 10.0%
!!! TAATAACTTTTAAAAATAAG+AGG + chr1_4:70881967-70881986 None:intergenic 10.0%
!! TACTAAAAATGAAAATTAAT+AGG + chr1_4:70882016-70882035 None:intergenic 10.0%
!!! ACATATTCATAATTTTTATA+AGG + chr1_4:70882645-70882664 None:intergenic 10.0%
!! TATAGTCAAAAAAATTTATA+GGG + chr1_4:70882988-70883007 None:intergenic 10.0%
!! ATATAGTCAAAAAAATTTAT+AGG + chr1_4:70882989-70883008 None:intergenic 10.0%
!! AAAAATTGATAAAAACTTAT+AGG - chr1_4:70883073-70883092 Msa0182400:intron 10.0%
!!! TTTGATAGTAAATATTTAAT+AGG - chr1_4:70881678-70881697 Msa0182400:intron 10.0%
!! ATATTTAGAAATTAGATTAA+GGG + chr1_4:70881740-70881759 None:intergenic 10.0%
!! TATATTTAGAAATTAGATTA+AGG + chr1_4:70881741-70881760 None:intergenic 10.0%
!!! AATAACTTTTAAAAATAAGA+GGG + chr1_4:70881966-70881985 None:intergenic 10.0%
!!! TAATAACTTTTAAAAATAAG+AGG + chr1_4:70881967-70881986 None:intergenic 10.0%
!! TACTAAAAATGAAAATTAAT+AGG + chr1_4:70882016-70882035 None:intergenic 10.0%
!!! ACATATTCATAATTTTTATA+AGG + chr1_4:70882645-70882664 None:intergenic 10.0%
!! TATAGTCAAAAAAATTTATA+GGG + chr1_4:70882988-70883007 None:intergenic 10.0%
!! ATATAGTCAAAAAAATTTAT+AGG + chr1_4:70882989-70883008 None:intergenic 10.0%
!! AAAAATTGATAAAAACTTAT+AGG - chr1_4:70883073-70883092 Msa0182400:intron 10.0%
!! ATAGTAAATATTTAATAGGT+TGG - chr1_4:70881682-70881701 Msa0182400:intron 15.0%
!!! TTTTATCAAAAAAATGTAAG+CGG - chr1_4:70881762-70881781 Msa0182400:intron 15.0%
!!! AAAAAATAATTTTTTGTCGA+GGG + chr1_4:70881873-70881892 None:intergenic 15.0%
!!! TAAAAAATAATTTTTTGTCG+AGG + chr1_4:70881874-70881893 None:intergenic 15.0%
!!! ATAACTTTTAAAAATAAGAG+GGG + chr1_4:70881965-70881984 None:intergenic 15.0%
!!! TTTTAAAACGTTTATTTCAT+TGG - chr1_4:70882114-70882133 Msa0182400:CDS 15.0%
!!! GTTCATACAAAATTTTATTT+TGG - chr1_4:70882285-70882304 Msa0182400:intron 15.0%
!!! TATATTTTATTTAGTACATG+TGG + chr1_4:70882392-70882411 None:intergenic 15.0%
!! AAATAAGATAGCATAAATTA+TGG - chr1_4:70883101-70883120 Msa0182400:intron 15.0%
!! AATAAGATAGCATAAATTAT+GGG - chr1_4:70883102-70883121 Msa0182400:intron 15.0%
!! ATAGTAAATATTTAATAGGT+TGG - chr1_4:70881682-70881701 Msa0182400:intron 15.0%
!!! TTTTATCAAAAAAATGTAAG+CGG - chr1_4:70881762-70881781 Msa0182400:intron 15.0%
!!! AAAAAATAATTTTTTGTCGA+GGG + chr1_4:70881873-70881892 None:intergenic 15.0%
!!! TAAAAAATAATTTTTTGTCG+AGG + chr1_4:70881874-70881893 None:intergenic 15.0%
!!! ATAACTTTTAAAAATAAGAG+GGG + chr1_4:70881965-70881984 None:intergenic 15.0%
!!! TTTTAAAACGTTTATTTCAT+TGG - chr1_4:70882114-70882133 Msa0182400:CDS 15.0%
!!! GTTCATACAAAATTTTATTT+TGG - chr1_4:70882285-70882304 Msa0182400:intron 15.0%
!!! TATATTTTATTTAGTACATG+TGG + chr1_4:70882392-70882411 None:intergenic 15.0%
!! AAATAAGATAGCATAAATTA+TGG - chr1_4:70883101-70883120 Msa0182400:intron 15.0%
!! AATAAGATAGCATAAATTAT+GGG - chr1_4:70883102-70883121 Msa0182400:intron 15.0%
!!! TGTTGATTTGATTAATTTCT+TGG - chr1_4:70881373-70881392 Msa0182400:three_prime_UTR 20.0%
!! TTTATCAAAAAAATGTAAGC+GGG - chr1_4:70881763-70881782 Msa0182400:intron 20.0%
!!! ATTTTACTTTTATATATGGG+TGG - chr1_4:70881795-70881814 Msa0182400:intron 20.0%
!! CTAAAACAAGATTAAATGTA+TGG + chr1_4:70881942-70881961 None:intergenic 20.0%
!!! TACAAAATTTTATTTTGGCT+TGG - chr1_4:70882290-70882309 Msa0182400:intron 20.0%
!! ATTTCAAAATCATAGATATC+AGG + chr1_4:70882744-70882763 None:intergenic 20.0%
!!! CTTTTTATGAATGAATCTAA+CGG + chr1_4:70882778-70882797 None:intergenic 20.0%
!!! AAATTTTATGACATTTCAAC+TGG - chr1_4:70882816-70882835 Msa0182400:intron 20.0%
!!! AATTTTATGACATTTCAACT+GGG - chr1_4:70882817-70882836 Msa0182400:intron 20.0%
!! AATTCAGAAAGAAAAGAAAA+TGG + chr1_4:70882915-70882934 None:intergenic 20.0%
!!! GCATCTTTTATAAAAATAGA+GGG - chr1_4:70883016-70883035 Msa0182400:intron 20.0%
!! ATAAGATAGCATAAATTATG+GGG - chr1_4:70883103-70883122 Msa0182400:intron 20.0%
!! AACAAATCAATTCAAATCAA+AGG + chr1_4:70883147-70883166 None:intergenic 20.0%
!! ATTATTCATTTACATGCTTA+AGG + chr1_4:70883630-70883649 None:intergenic 20.0%
!!! TGTTGATTTGATTAATTTCT+TGG - chr1_4:70881373-70881392 Msa0182400:three_prime_UTR 20.0%
!! TTTATCAAAAAAATGTAAGC+GGG - chr1_4:70881763-70881782 Msa0182400:intron 20.0%
!!! ATTTTACTTTTATATATGGG+TGG - chr1_4:70881795-70881814 Msa0182400:intron 20.0%
!! CTAAAACAAGATTAAATGTA+TGG + chr1_4:70881942-70881961 None:intergenic 20.0%
!!! TACAAAATTTTATTTTGGCT+TGG - chr1_4:70882290-70882309 Msa0182400:intron 20.0%
!! ATTTCAAAATCATAGATATC+AGG + chr1_4:70882744-70882763 None:intergenic 20.0%
!!! CTTTTTATGAATGAATCTAA+CGG + chr1_4:70882778-70882797 None:intergenic 20.0%
!!! AAATTTTATGACATTTCAAC+TGG - chr1_4:70882816-70882835 Msa0182400:intron 20.0%
!!! AATTTTATGACATTTCAACT+GGG - chr1_4:70882817-70882836 Msa0182400:intron 20.0%
!! AATTCAGAAAGAAAAGAAAA+TGG + chr1_4:70882915-70882934 None:intergenic 20.0%
!!! GCATCTTTTATAAAAATAGA+GGG - chr1_4:70883016-70883035 Msa0182400:intron 20.0%
!! ATAAGATAGCATAAATTATG+GGG - chr1_4:70883103-70883122 Msa0182400:intron 20.0%
!! AACAAATCAATTCAAATCAA+AGG + chr1_4:70883147-70883166 None:intergenic 20.0%
!! ATTATTCATTTACATGCTTA+AGG + chr1_4:70883630-70883649 None:intergenic 20.0%
! AAATATATGTGATGTACCAA+TGG + chr1_4:70881410-70881429 None:intergenic 25.0%
! GGTACATCACATATATTTAT+TGG - chr1_4:70881412-70881431 Msa0182400:three_prime_UTR 25.0%
!! GTAAATATTTAATAGGTTGG+TGG - chr1_4:70881685-70881704 Msa0182400:intron 25.0%
! TTTAGAAATTAGATTAAGGG+AGG + chr1_4:70881737-70881756 None:intergenic 25.0%
!!! ATTTTCATTTTTAGTAGTCG+TGG - chr1_4:70882020-70882039 Msa0182400:intron 25.0%
! TCATTGGTAGAAATAGAAAT+AGG - chr1_4:70882130-70882149 Msa0182400:CDS 25.0%
! AATAAAGAGAATGAGCATAA+GGG + chr1_4:70882577-70882596 None:intergenic 25.0%
! AAATAAAGAGAATGAGCATA+AGG + chr1_4:70882578-70882597 None:intergenic 25.0%
! TTATGCTCATTCTCTTTATT+TGG - chr1_4:70882577-70882596 Msa0182400:intron 25.0%
! AAAAATAAGGCTTCTGAATA+GGG + chr1_4:70882673-70882692 None:intergenic 25.0%
!!! AGCCTTATTTTTGTAACATT+TGG - chr1_4:70882681-70882700 Msa0182400:intron 25.0%
! CACCAAATGTTACAAAAATA+AGG + chr1_4:70882686-70882705 None:intergenic 25.0%
! GAGGTGATAATAATTGAAAA+TGG + chr1_4:70882882-70882901 None:intergenic 25.0%
! AGTCAAAAAAATTTATAGGG+AGG + chr1_4:70882985-70883004 None:intergenic 25.0%
!! CGCATCTTTTATAAAAATAG+AGG - chr1_4:70883015-70883034 Msa0182400:intron 25.0%
! AAATGTACCTGTGTTTAAAA+AGG - chr1_4:70883042-70883061 Msa0182400:intron 25.0%
! AAATATATGTGATGTACCAA+TGG + chr1_4:70881410-70881429 None:intergenic 25.0%
! GGTACATCACATATATTTAT+TGG - chr1_4:70881412-70881431 Msa0182400:three_prime_UTR 25.0%
!! GTAAATATTTAATAGGTTGG+TGG - chr1_4:70881685-70881704 Msa0182400:intron 25.0%
! TTTAGAAATTAGATTAAGGG+AGG + chr1_4:70881737-70881756 None:intergenic 25.0%
!!! ATTTTCATTTTTAGTAGTCG+TGG - chr1_4:70882020-70882039 Msa0182400:intron 25.0%
! TCATTGGTAGAAATAGAAAT+AGG - chr1_4:70882130-70882149 Msa0182400:CDS 25.0%
! AATAAAGAGAATGAGCATAA+GGG + chr1_4:70882577-70882596 None:intergenic 25.0%
! AAATAAAGAGAATGAGCATA+AGG + chr1_4:70882578-70882597 None:intergenic 25.0%
! TTATGCTCATTCTCTTTATT+TGG - chr1_4:70882577-70882596 Msa0182400:intron 25.0%
! AAAAATAAGGCTTCTGAATA+GGG + chr1_4:70882673-70882692 None:intergenic 25.0%
!!! AGCCTTATTTTTGTAACATT+TGG - chr1_4:70882681-70882700 Msa0182400:intron 25.0%
! CACCAAATGTTACAAAAATA+AGG + chr1_4:70882686-70882705 None:intergenic 25.0%
! GAGGTGATAATAATTGAAAA+TGG + chr1_4:70882882-70882901 None:intergenic 25.0%
! AGTCAAAAAAATTTATAGGG+AGG + chr1_4:70882985-70883004 None:intergenic 25.0%
!! CGCATCTTTTATAAAAATAG+AGG - chr1_4:70883015-70883034 Msa0182400:intron 25.0%
! AAATGTACCTGTGTTTAAAA+AGG - chr1_4:70883042-70883061 Msa0182400:intron 25.0%
AGTGTTAGGAATCATTAACT+TGG - chr1_4:70881458-70881477 Msa0182400:CDS 30.0%
! TAGGAATCATTAACTTGGTT+TGG - chr1_4:70881463-70881482 Msa0182400:CDS 30.0%
! TACTTTTATATATGGGTGGT+TGG - chr1_4:70881799-70881818 Msa0182400:intron 30.0%
CTTCTTAAATAAAGACGAGA+CGG - chr1_4:70882156-70882175 Msa0182400:CDS 30.0%
ATTAAGAAGAGTTCACTCTA+AGG + chr1_4:70882223-70882242 None:intergenic 30.0%
ATGAACTAACCCACATAAAT+TGG + chr1_4:70882271-70882290 None:intergenic 30.0%
!!! GTGGCTTTTTTTCTAAAACT+TGG + chr1_4:70882373-70882392 None:intergenic 30.0%
TCAGAACAATCATATCACTA+AGG + chr1_4:70882417-70882436 None:intergenic 30.0%
ATGGAAAGACATGAAAACAA+CGG - chr1_4:70882461-70882480 Msa0182400:CDS 30.0%
TTTATTTGGTATAATGCAGC+TGG - chr1_4:70882591-70882610 Msa0182400:intron 30.0%
CAAAAATAAGGCTTCTGAAT+AGG + chr1_4:70882674-70882693 None:intergenic 30.0%
TTATTTATGTGTTGCATTGC+AGG - chr1_4:70882712-70882731 Msa0182400:intron 30.0%
! AAAAGTTCAACTTGTTCTTG+AGG - chr1_4:70882793-70882812 Msa0182400:intron 30.0%
AGATCTTAGATTCTTCTTTG+TGG - chr1_4:70882842-70882861 Msa0182400:intron 30.0%
ATTGAATTTCAGACAATAGC+TGG - chr1_4:70883183-70883202 Msa0182400:intron 30.0%
GAAGAGATTGTTCAACAAAT+TGG - chr1_4:70883439-70883458 Msa0182400:five_prime_UTR 30.0%
CGGAGAAGATATAAAATCAT+CGG + chr1_4:70883517-70883536 None:intergenic 30.0%
!!! ATGTTTTATTTCATGCGTGA+CGG + chr1_4:70883537-70883556 None:intergenic 30.0%
TTCATTTACATGCTTAAGGT+AGG + chr1_4:70883626-70883645 None:intergenic 30.0%
AGTGTTAGGAATCATTAACT+TGG - chr1_4:70881458-70881477 Msa0182400:CDS 30.0%
! TAGGAATCATTAACTTGGTT+TGG - chr1_4:70881463-70881482 Msa0182400:CDS 30.0%
! TACTTTTATATATGGGTGGT+TGG - chr1_4:70881799-70881818 Msa0182400:intron 30.0%
CTTCTTAAATAAAGACGAGA+CGG - chr1_4:70882156-70882175 Msa0182400:CDS 30.0%
ATTAAGAAGAGTTCACTCTA+AGG + chr1_4:70882223-70882242 None:intergenic 30.0%
ATGAACTAACCCACATAAAT+TGG + chr1_4:70882271-70882290 None:intergenic 30.0%
!!! GTGGCTTTTTTTCTAAAACT+TGG + chr1_4:70882373-70882392 None:intergenic 30.0%
TCAGAACAATCATATCACTA+AGG + chr1_4:70882417-70882436 None:intergenic 30.0%
ATGGAAAGACATGAAAACAA+CGG - chr1_4:70882461-70882480 Msa0182400:CDS 30.0%
TTTATTTGGTATAATGCAGC+TGG - chr1_4:70882591-70882610 Msa0182400:intron 30.0%
CAAAAATAAGGCTTCTGAAT+AGG + chr1_4:70882674-70882693 None:intergenic 30.0%
TTATTTATGTGTTGCATTGC+AGG - chr1_4:70882712-70882731 Msa0182400:intron 30.0%
! AAAAGTTCAACTTGTTCTTG+AGG - chr1_4:70882793-70882812 Msa0182400:intron 30.0%
AGATCTTAGATTCTTCTTTG+TGG - chr1_4:70882842-70882861 Msa0182400:intron 30.0%
ATTGAATTTCAGACAATAGC+TGG - chr1_4:70883183-70883202 Msa0182400:intron 30.0%
GAAGAGATTGTTCAACAAAT+TGG - chr1_4:70883439-70883458 Msa0182400:five_prime_UTR 30.0%
CGGAGAAGATATAAAATCAT+CGG + chr1_4:70883517-70883536 None:intergenic 30.0%
!!! ATGTTTTATTTCATGCGTGA+CGG + chr1_4:70883537-70883556 None:intergenic 30.0%
TTCATTTACATGCTTAAGGT+AGG + chr1_4:70883626-70883645 None:intergenic 30.0%
AACATTTGTATCGAGAGGTA+AGG + chr1_4:70881354-70881373 None:intergenic 35.0%
TCAACAACATTTGTATCGAG+AGG + chr1_4:70881359-70881378 None:intergenic 35.0%
GCATGAAACATAACAGTGTT+AGG - chr1_4:70881444-70881463 Msa0182400:CDS 35.0%
!! ATAAACCAGGTTGATTGGAA+CGG + chr1_4:70881548-70881567 None:intergenic 35.0%
TCCAATCAACCTGGTTTATT+TGG - chr1_4:70881549-70881568 Msa0182400:CDS 35.0%
!! ACCAAATAAACCAGGTTGAT+TGG + chr1_4:70881553-70881572 None:intergenic 35.0%
GCATGAAAACGTGATACAAA+AGG + chr1_4:70881633-70881652 None:intergenic 35.0%
AGGCAAATATCTTTCCACTA+GGG + chr1_4:70881996-70882015 None:intergenic 35.0%
TAGGCAAATATCTTTCCACT+AGG + chr1_4:70881997-70882016 None:intergenic 35.0%
GTCTCAAGTTTGAATTCTCT+TGG - chr1_4:70882243-70882262 Msa0182400:intron 35.0%
TCTCTTGGTACCAATTTATG+TGG - chr1_4:70882258-70882277 Msa0182400:intron 35.0%
CTCTTGGTACCAATTTATGT+GGG - chr1_4:70882259-70882278 Msa0182400:intron 35.0%
! AATTGTGGCTGGATTTTCAA+TGG - chr1_4:70882488-70882507 Msa0182400:CDS 35.0%
TGAATCTAACGGTAGAATCT+GGG + chr1_4:70882767-70882786 None:intergenic 35.0%
ATGAATCTAACGGTAGAATC+TGG + chr1_4:70882768-70882787 None:intergenic 35.0%
AGAAAAGAAAATGGTCTCAG+TGG + chr1_4:70882906-70882925 None:intergenic 35.0%
GTACCTGTGTTTAAAAAGGT+AGG - chr1_4:70883046-70883065 Msa0182400:intron 35.0%
! GTTCCTACCTTTTTAAACAC+AGG + chr1_4:70883052-70883071 None:intergenic 35.0%
CTATGGATCATGTCTACTAT+TGG - chr1_4:70883207-70883226 Msa0182400:intron 35.0%
CAAGAATACACAACATAGCA+TGG + chr1_4:70883326-70883345 None:intergenic 35.0%
CACTTCCAATTATGTATGAG+CGG - chr1_4:70883369-70883388 Msa0182400:CDS 35.0%
TCATACCGCTCATACATAAT+TGG + chr1_4:70883377-70883396 None:intergenic 35.0%
TGGATTCTACAGTTCTCAAT+AGG - chr1_4:70883459-70883478 Msa0182400:five_prime_UTR 35.0%
AGTTCTCAATAGGATTCCAA+GGG - chr1_4:70883469-70883488 Msa0182400:five_prime_UTR 35.0%
!! CATCTGCTTTTGCCATTATT+TGG - chr1_4:70883582-70883601 Msa0182400:five_prime_UTR 35.0%
ATCTGCTTGAAGCCAAATAA+TGG + chr1_4:70883597-70883616 None:intergenic 35.0%
AACATTTGTATCGAGAGGTA+AGG + chr1_4:70881354-70881373 None:intergenic 35.0%
TCAACAACATTTGTATCGAG+AGG + chr1_4:70881359-70881378 None:intergenic 35.0%
GCATGAAACATAACAGTGTT+AGG - chr1_4:70881444-70881463 Msa0182400:CDS 35.0%
!! ATAAACCAGGTTGATTGGAA+CGG + chr1_4:70881548-70881567 None:intergenic 35.0%
TCCAATCAACCTGGTTTATT+TGG - chr1_4:70881549-70881568 Msa0182400:CDS 35.0%
!! ACCAAATAAACCAGGTTGAT+TGG + chr1_4:70881553-70881572 None:intergenic 35.0%
GCATGAAAACGTGATACAAA+AGG + chr1_4:70881633-70881652 None:intergenic 35.0%
AGGCAAATATCTTTCCACTA+GGG + chr1_4:70881996-70882015 None:intergenic 35.0%
TAGGCAAATATCTTTCCACT+AGG + chr1_4:70881997-70882016 None:intergenic 35.0%
GTCTCAAGTTTGAATTCTCT+TGG - chr1_4:70882243-70882262 Msa0182400:intron 35.0%
TCTCTTGGTACCAATTTATG+TGG - chr1_4:70882258-70882277 Msa0182400:intron 35.0%
CTCTTGGTACCAATTTATGT+GGG - chr1_4:70882259-70882278 Msa0182400:intron 35.0%
! AATTGTGGCTGGATTTTCAA+TGG - chr1_4:70882488-70882507 Msa0182400:CDS 35.0%
TGAATCTAACGGTAGAATCT+GGG + chr1_4:70882767-70882786 None:intergenic 35.0%
ATGAATCTAACGGTAGAATC+TGG + chr1_4:70882768-70882787 None:intergenic 35.0%
AGAAAAGAAAATGGTCTCAG+TGG + chr1_4:70882906-70882925 None:intergenic 35.0%
GTACCTGTGTTTAAAAAGGT+AGG - chr1_4:70883046-70883065 Msa0182400:intron 35.0%
! GTTCCTACCTTTTTAAACAC+AGG + chr1_4:70883052-70883071 None:intergenic 35.0%
CTATGGATCATGTCTACTAT+TGG - chr1_4:70883207-70883226 Msa0182400:intron 35.0%
CAAGAATACACAACATAGCA+TGG + chr1_4:70883326-70883345 None:intergenic 35.0%
CACTTCCAATTATGTATGAG+CGG - chr1_4:70883369-70883388 Msa0182400:CDS 35.0%
TCATACCGCTCATACATAAT+TGG + chr1_4:70883377-70883396 None:intergenic 35.0%
TGGATTCTACAGTTCTCAAT+AGG - chr1_4:70883459-70883478 Msa0182400:five_prime_UTR 35.0%
AGTTCTCAATAGGATTCCAA+GGG - chr1_4:70883469-70883488 Msa0182400:five_prime_UTR 35.0%
!! CATCTGCTTTTGCCATTATT+TGG - chr1_4:70883582-70883601 Msa0182400:five_prime_UTR 35.0%
ATCTGCTTGAAGCCAAATAA+TGG + chr1_4:70883597-70883616 None:intergenic 35.0%
TTGTATCGAGAGGTAAGGTA+TGG + chr1_4:70881349-70881368 None:intergenic 40.0%
CTTGGTTTCAAAGTCTCCAT+TGG - chr1_4:70881391-70881410 Msa0182400:three_prime_UTR 40.0%
GTTATGTTTCATGCGCATTG+AGG + chr1_4:70881438-70881457 None:intergenic 40.0%
AGTGGTCTACCAAATAAACC+AGG + chr1_4:70881561-70881580 None:intergenic 40.0%
! AGGGAGGTACATATTGTATC+AGG + chr1_4:70881721-70881740 None:intergenic 40.0%
!! ATTTAAAGCGAGGGTTTTGG+TGG + chr1_4:70881850-70881869 None:intergenic 40.0%
AAATATCTTTCCACTAGGGC+TGG + chr1_4:70881992-70882011 None:intergenic 40.0%
CATCATTGTATCAACCCATG+TGG + chr1_4:70882186-70882205 None:intergenic 40.0%
! TACCTCGGTTTAGTCAGTTT+TGG - chr1_4:70882338-70882357 Msa0182400:intron 40.0%
!!! GGTTTAGTCAGTTTTGGAGT+CGG - chr1_4:70882344-70882363 Msa0182400:CDS 40.0%
CAGTTGCTGATATCTTGCTA+TGG - chr1_4:70882442-70882461 Msa0182400:CDS 40.0%
! TGGCTGGATTTTCAATGGTT+TGG - chr1_4:70882493-70882512 Msa0182400:CDS 40.0%
! GGTTTGGTTTCTCTTTGAAG+TGG - chr1_4:70882509-70882528 Msa0182400:intron 40.0%
ATGCAGCTGGATTAATCACT+TGG - chr1_4:70882604-70882623 Msa0182400:intron 40.0%
! TTCAGACAATAGCTGGTCTA+TGG - chr1_4:70883190-70883209 Msa0182400:intron 40.0%
! TTGTACAGCATTTTTGTGCC+TGG - chr1_4:70883343-70883362 Msa0182400:intron 40.0%
!! ACATAATTGGAAGTGTCACC+AGG + chr1_4:70883364-70883383 None:intergenic 40.0%
! GTGGACTATCTAGCAAGTAA+AGG - chr1_4:70883404-70883423 Msa0182400:CDS 40.0%
TGAACAATCTCTTCACGTCT+TGG + chr1_4:70883433-70883452 None:intergenic 40.0%
CAGTTCTCAATAGGATTCCA+AGG - chr1_4:70883468-70883487 Msa0182400:five_prime_UTR 40.0%
GTTCTCAATAGGATTCCAAG+GGG - chr1_4:70883470-70883489 Msa0182400:five_prime_UTR 40.0%
! CGGTACTTCTTTTCTTTCAC+AGG + chr1_4:70883497-70883516 None:intergenic 40.0%
TTGTATCGAGAGGTAAGGTA+TGG + chr1_4:70881349-70881368 None:intergenic 40.0%
CTTGGTTTCAAAGTCTCCAT+TGG - chr1_4:70881391-70881410 Msa0182400:three_prime_UTR 40.0%
GTTATGTTTCATGCGCATTG+AGG + chr1_4:70881438-70881457 None:intergenic 40.0%
AGTGGTCTACCAAATAAACC+AGG + chr1_4:70881561-70881580 None:intergenic 40.0%
! AGGGAGGTACATATTGTATC+AGG + chr1_4:70881721-70881740 None:intergenic 40.0%
!! ATTTAAAGCGAGGGTTTTGG+TGG + chr1_4:70881850-70881869 None:intergenic 40.0%
AAATATCTTTCCACTAGGGC+TGG + chr1_4:70881992-70882011 None:intergenic 40.0%
CATCATTGTATCAACCCATG+TGG + chr1_4:70882186-70882205 None:intergenic 40.0%
! TACCTCGGTTTAGTCAGTTT+TGG - chr1_4:70882338-70882357 Msa0182400:intron 40.0%
!!! GGTTTAGTCAGTTTTGGAGT+CGG - chr1_4:70882344-70882363 Msa0182400:CDS 40.0%
CAGTTGCTGATATCTTGCTA+TGG - chr1_4:70882442-70882461 Msa0182400:CDS 40.0%
! TGGCTGGATTTTCAATGGTT+TGG - chr1_4:70882493-70882512 Msa0182400:CDS 40.0%
! GGTTTGGTTTCTCTTTGAAG+TGG - chr1_4:70882509-70882528 Msa0182400:intron 40.0%
ATGCAGCTGGATTAATCACT+TGG - chr1_4:70882604-70882623 Msa0182400:intron 40.0%
! TTCAGACAATAGCTGGTCTA+TGG - chr1_4:70883190-70883209 Msa0182400:intron 40.0%
! TTGTACAGCATTTTTGTGCC+TGG - chr1_4:70883343-70883362 Msa0182400:intron 40.0%
!! ACATAATTGGAAGTGTCACC+AGG + chr1_4:70883364-70883383 None:intergenic 40.0%
! GTGGACTATCTAGCAAGTAA+AGG - chr1_4:70883404-70883423 Msa0182400:CDS 40.0%
TGAACAATCTCTTCACGTCT+TGG + chr1_4:70883433-70883452 None:intergenic 40.0%
CAGTTCTCAATAGGATTCCA+AGG - chr1_4:70883468-70883487 Msa0182400:five_prime_UTR 40.0%
GTTCTCAATAGGATTCCAAG+GGG - chr1_4:70883470-70883489 Msa0182400:five_prime_UTR 40.0%
! CGGTACTTCTTTTCTTTCAC+AGG + chr1_4:70883497-70883516 None:intergenic 40.0%
!! GGTAAGGTATGGCTTTAGCA+TGG + chr1_4:70881338-70881357 None:intergenic 45.0%
TCTTACTCTTTCCTCCACCA+AGG + chr1_4:70881593-70881612 None:intergenic 45.0%
TATATGGGTGGTTGGAAAGC+AGG - chr1_4:70881807-70881826 Msa0182400:intron 45.0%
!! GGGATTTAAAGCGAGGGTTT+TGG + chr1_4:70881853-70881872 None:intergenic 45.0%
! TGTCGAGGGATTTAAAGCGA+GGG + chr1_4:70881859-70881878 None:intergenic 45.0%
! TTGTCGAGGGATTTAAAGCG+AGG + chr1_4:70881860-70881879 None:intergenic 45.0%
AGTTATTAGACCAGCCCTAG+TGG - chr1_4:70881979-70881998 Msa0182400:intron 45.0%
! TTTTAGTAGTCGTGGACTCG+TGG - chr1_4:70882028-70882047 Msa0182400:intron 45.0%
CAATCCATTGTCAGCTTGCA+GGG + chr1_4:70882317-70882336 None:intergenic 45.0%
!! CTGACAATGGATTGGTACCT+CGG - chr1_4:70882323-70882342 Msa0182400:intron 45.0%
CTCCAAAACTGACTAAACCG+AGG + chr1_4:70882343-70882362 None:intergenic 45.0%
GAAAACAACGGCAGCAATTG+TGG - chr1_4:70882473-70882492 Msa0182400:CDS 45.0%
GAATGAGCATAAGGGCTATG+AGG + chr1_4:70882569-70882588 None:intergenic 45.0%
AGAAAATGGTCTCAGTGGAG+AGG + chr1_4:70882901-70882920 None:intergenic 45.0%
GTATGAGCGGTATGAACATG+AGG - chr1_4:70883382-70883401 Msa0182400:CDS 45.0%
! TTTTCTTTCACAGGTCCCCT+TGG + chr1_4:70883488-70883507 None:intergenic 45.0%
!! GGTAAGGTATGGCTTTAGCA+TGG + chr1_4:70881338-70881357 None:intergenic 45.0%
TCTTACTCTTTCCTCCACCA+AGG + chr1_4:70881593-70881612 None:intergenic 45.0%
TATATGGGTGGTTGGAAAGC+AGG - chr1_4:70881807-70881826 Msa0182400:intron 45.0%
!! GGGATTTAAAGCGAGGGTTT+TGG + chr1_4:70881853-70881872 None:intergenic 45.0%
! TGTCGAGGGATTTAAAGCGA+GGG + chr1_4:70881859-70881878 None:intergenic 45.0%
! TTGTCGAGGGATTTAAAGCG+AGG + chr1_4:70881860-70881879 None:intergenic 45.0%
AGTTATTAGACCAGCCCTAG+TGG - chr1_4:70881979-70881998 Msa0182400:intron 45.0%
! TTTTAGTAGTCGTGGACTCG+TGG - chr1_4:70882028-70882047 Msa0182400:intron 45.0%
CAATCCATTGTCAGCTTGCA+GGG + chr1_4:70882317-70882336 None:intergenic 45.0%
!! CTGACAATGGATTGGTACCT+CGG - chr1_4:70882323-70882342 Msa0182400:intron 45.0%
CTCCAAAACTGACTAAACCG+AGG + chr1_4:70882343-70882362 None:intergenic 45.0%
GAAAACAACGGCAGCAATTG+TGG - chr1_4:70882473-70882492 Msa0182400:CDS 45.0%
GAATGAGCATAAGGGCTATG+AGG + chr1_4:70882569-70882588 None:intergenic 45.0%
AGAAAATGGTCTCAGTGGAG+AGG + chr1_4:70882901-70882920 None:intergenic 45.0%
GTATGAGCGGTATGAACATG+AGG - chr1_4:70883382-70883401 Msa0182400:CDS 45.0%
! TTTTCTTTCACAGGTCCCCT+TGG + chr1_4:70883488-70883507 None:intergenic 45.0%
!!! TAAAATTTTACTTTTATATA+TGG - chr1_4:70881791-70881810 Msa0182400:intron 5.0%
!!! AAAATTTTACTTTTATATAT+GGG - chr1_4:70881792-70881811 Msa0182400:intron 5.0%
!!! AATAATAAAATTAATTTGTT+TGG + chr1_4:70883276-70883295 None:intergenic 5.0%
!!! ACAAATTAATTTTATTATTT+AGG - chr1_4:70883277-70883296 Msa0182400:intron 5.0%
!! CATATTAATAATTAATAATA+AGG + chr1_4:70883303-70883322 None:intergenic 5.0%
!!! TAAAATTTTACTTTTATATA+TGG - chr1_4:70881791-70881810 Msa0182400:intron 5.0%
!!! AAAATTTTACTTTTATATAT+GGG - chr1_4:70881792-70881811 Msa0182400:intron 5.0%
!!! AATAATAAAATTAATTTGTT+TGG + chr1_4:70883276-70883295 None:intergenic 5.0%
!!! ACAAATTAATTTTATTATTT+AGG - chr1_4:70883277-70883296 Msa0182400:intron 5.0%
!! CATATTAATAATTAATAATA+AGG + chr1_4:70883303-70883322 None:intergenic 5.0%
CTTAATCATGTGTGGGCACG+AGG - chr1_4:70881292-70881311 Msa0182400:three_prime_UTR 50.0%
!! GGAACGGATTGGCATGACTA+TGG + chr1_4:70881532-70881551 None:intergenic 50.0%
!! CCAGGTTGATTGGAACGGAT+TGG + chr1_4:70881543-70881562 None:intergenic 50.0%
CCAATCCGTTCCAATCAACC+TGG - chr1_4:70881540-70881559 Msa0182400:CDS 50.0%
TTGGAAAGCAGGTCGGTCTA+AGG - chr1_4:70881818-70881837 Msa0182400:intron 50.0%
TGGAAAGCAGGTCGGTCTAA+GGG - chr1_4:70881819-70881838 Msa0182400:intron 50.0%
AGACGAGACGGAAATCCACA+TGG - chr1_4:70882168-70882187 Msa0182400:CDS 50.0%
GACGAGACGGAAATCCACAT+GGG - chr1_4:70882169-70882188 Msa0182400:CDS 50.0%
CCAATCCATTGTCAGCTTGC+AGG + chr1_4:70882318-70882337 None:intergenic 50.0%
CCTGCAAGCTGACAATGGAT+TGG - chr1_4:70882315-70882334 Msa0182400:intron 50.0%
GCATAAGGGCTATGAGGATG+TGG + chr1_4:70882563-70882582 None:intergenic 50.0%
TGAGCGGTATGAACATGAGG+TGG - chr1_4:70883385-70883404 Msa0182400:CDS 50.0%
CTTAATCATGTGTGGGCACG+AGG - chr1_4:70881292-70881311 Msa0182400:three_prime_UTR 50.0%
!! GGAACGGATTGGCATGACTA+TGG + chr1_4:70881532-70881551 None:intergenic 50.0%
!! CCAGGTTGATTGGAACGGAT+TGG + chr1_4:70881543-70881562 None:intergenic 50.0%
CCAATCCGTTCCAATCAACC+TGG - chr1_4:70881540-70881559 Msa0182400:CDS 50.0%
TTGGAAAGCAGGTCGGTCTA+AGG - chr1_4:70881818-70881837 Msa0182400:intron 50.0%
TGGAAAGCAGGTCGGTCTAA+GGG - chr1_4:70881819-70881838 Msa0182400:intron 50.0%
AGACGAGACGGAAATCCACA+TGG - chr1_4:70882168-70882187 Msa0182400:CDS 50.0%
GACGAGACGGAAATCCACAT+GGG - chr1_4:70882169-70882188 Msa0182400:CDS 50.0%
CCAATCCATTGTCAGCTTGC+AGG + chr1_4:70882318-70882337 None:intergenic 50.0%
CCTGCAAGCTGACAATGGAT+TGG - chr1_4:70882315-70882334 Msa0182400:intron 50.0%
GCATAAGGGCTATGAGGATG+TGG + chr1_4:70882563-70882582 None:intergenic 50.0%
TGAGCGGTATGAACATGAGG+TGG - chr1_4:70883385-70883404 Msa0182400:CDS 50.0%
AGACCACTTCACGCAGTCCT+TGG - chr1_4:70881573-70881592 Msa0182400:CDS 55.0%
TGGGTGGTTGGAAAGCAGGT+CGG - chr1_4:70881811-70881830 Msa0182400:intron 55.0%
AGCAGGTCGGTCTAAGGGTA+AGG - chr1_4:70881824-70881843 Msa0182400:intron 55.0%
TGGACCCTGCAAGCTGACAA+TGG - chr1_4:70882310-70882329 Msa0182400:intron 55.0%
ACAACGGCAGCAATTGTGGC+TGG - chr1_4:70882477-70882496 Msa0182400:CDS 55.0%
AGACCACTTCACGCAGTCCT+TGG - chr1_4:70881573-70881592 Msa0182400:CDS 55.0%
TGGGTGGTTGGAAAGCAGGT+CGG - chr1_4:70881811-70881830 Msa0182400:intron 55.0%
AGCAGGTCGGTCTAAGGGTA+AGG - chr1_4:70881824-70881843 Msa0182400:intron 55.0%
TGGACCCTGCAAGCTGACAA+TGG - chr1_4:70882310-70882329 Msa0182400:intron 55.0%
ACAACGGCAGCAATTGTGGC+TGG - chr1_4:70882477-70882496 Msa0182400:CDS 55.0%
CCACCAAGGACTGCGTGAAG+TGG + chr1_4:70881579-70881598 None:intergenic 60.0%
CCACTTCACGCAGTCCTTGG+TGG - chr1_4:70881576-70881595 Msa0182400:CDS 60.0%
CTTCACGCAGTCCTTGGTGG+AGG - chr1_4:70881579-70881598 Msa0182400:CDS 60.0%
CCACCAAGGACTGCGTGAAG+TGG + chr1_4:70881579-70881598 None:intergenic 60.0%
CCACTTCACGCAGTCCTTGG+TGG - chr1_4:70881576-70881595 Msa0182400:CDS 60.0%
CTTCACGCAGTCCTTGGTGG+AGG - chr1_4:70881579-70881598 Msa0182400:CDS 60.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 70881286 70883678 70881286 ID=Msa0182400;Name=Msa0182400
chr1_4 mRNA 70881286 70883678 70881286 ID=Msa0182400-mRNA-1;Parent=Msa0182400;Name=Msa0182400-mRNA-1;_AED=0.05;_eAED=0.05;_QI=251|1|1|1|1|1|5|158|206
chr1_4 exon 70881286 70881613 70881286 ID=Msa0182400-mRNA-1:exon:23774;Parent=Msa0182400-mRNA-1
chr1_4 exon 70881700 70881769 70881700 ID=Msa0182400-mRNA-1:exon:23773;Parent=Msa0182400-mRNA-1
chr1_4 exon 70882101 70882230 70882101 ID=Msa0182400-mRNA-1:exon:23772;Parent=Msa0182400-mRNA-1
chr1_4 exon 70882339 70882519 70882339 ID=Msa0182400-mRNA-1:exon:23771;Parent=Msa0182400-mRNA-1
chr1_4 exon 70883358 70883678 70883358 ID=Msa0182400-mRNA-1:exon:23770;Parent=Msa0182400-mRNA-1
chr1_4 five_prime_UTR 70883428 70883678 70883428 ID=Msa0182400-mRNA-1:five_prime_utr;Parent=Msa0182400-mRNA-1
chr1_4 CDS 70883358 70883427 70883358 ID=Msa0182400-mRNA-1:cds;Parent=Msa0182400-mRNA-1
chr1_4 CDS 70882339 70882519 70882339 ID=Msa0182400-mRNA-1:cds;Parent=Msa0182400-mRNA-1
chr1_4 CDS 70882101 70882230 70882101 ID=Msa0182400-mRNA-1:cds;Parent=Msa0182400-mRNA-1
chr1_4 CDS 70881700 70881769 70881700 ID=Msa0182400-mRNA-1:cds;Parent=Msa0182400-mRNA-1
chr1_4 CDS 70881444 70881613 70881444 ID=Msa0182400-mRNA-1:cds;Parent=Msa0182400-mRNA-1
chr1_4 three_prime_UTR 70881286 70881443 70881286 ID=Msa0182400-mRNA-1:three_prime_utr;Parent=Msa0182400-mRNA-1
Gene Sequence

>Msa0182400

ATGCCAATCCGTTCCAATCAACCTGGTTTATTTGGTAGACCACTTCACGCAGTCCTTGGTGGAGGAAAGATTGCTGATATCTTGCTATGGAAAGACATGAAAACAACGGCAGCAATTGTGGCTGGATTTTCAATGGTTTGGTTTCTCTTTGAAGTGGTTGAATATAATCTTGTTACTCTGCTATGCCACATCCTCATAGCCCTTATGCTCATTCTCTTTATTTGGTATAATGCAGCTGGATTAATCACTTGGAAACTTCCTGATATCTATGATTTTGAAATCCCAGATTCTACCGTTAGATTCATTCATAAAAAGTTCAACTTGTTCTTGAGGAAATTTTATGACATTTCAACTGGGAAAGATCTTAGATTCTTCTTTGTGACAATAGCTGGTCTATGGATCATGTCTACTATTGGAAATTTCTTCAGCACTGTCAATTTACTATATACAACATTTTTGTGCCTGGTGACACTTCCAATTATGTATGAGCGGTATGAACATGAGGTGGACTATCTAGCAAGTAAAGGAAACCAAGACGTGAAGAGATTGTTCAACAAATTGGATTCTACAGTTCTCAATAGGATTCCAAGGGGACCTGTGAAAGAAAAGAAGTACCGATGA
Protein sequence

>Msa0182400

MPIRSNQPGLFGRPLHAVLGGGKIADILLWKDMKTTAAIVAGFSMVWFLFEVVEYNLVTLLCHILIALMLILFIWYNAAGLITWKLPDIYDFEIPDSTVRFIHKKFNLFLRKFYDISTGKDLRFFFVTIAGLWIMSTIGNFFSTVNLLYTTFLCLVTLPIMYERYEHEVDYLASKGNQDVKRLFNKLDSTVLNRIPRGPVKEKKYR*