AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0056000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0056000 MtrunA17_Chr1g0148391 98.742 477 5 1 1 477 1 476 0.0 963
Msa0056000 MtrunA17_Chr3g0138741 75.630 476 115 1 2 476 6 481 0.0 756
Msa0056000 MtrunA17_Chr6g0461601 55.602 482 205 5 3 477 2 481 0.0 525
Msa0056000 MtrunA17_Chr4g0069801 57.018 456 192 4 1 453 1 455 0.0 523
Msa0056000 MtrunA17_Chr2g0306311 50.000 504 213 7 9 474 9 511 5.17e-177 506
Msa0056000 MtrunA17_Chr4g0062771 51.042 480 227 4 4 476 8 486 2.21e-176 504
Msa0056000 MtrunA17_Chr7g0253091 53.878 477 211 5 4 476 3 474 2.23e-173 496
Msa0056000 MtrunA17_Chr8g0383311 51.029 486 222 6 5 477 14 496 2.72e-172 494
Msa0056000 MtrunA17_Chr4g0076581 52.331 472 218 4 10 476 14 483 1.11e-167 482
Msa0056000 MtrunA17_Chr2g0290821 53.630 427 194 2 27 451 28 452 2.14e-163 471
Msa0056000 MtrunA17_Chr3g0129341 48.739 476 232 6 1 467 1 473 8.50e-163 469
Msa0056000 MtrunA17_Chr3g0105981 46.455 409 215 4 26 434 26 430 2.48e-129 382
Msa0056000 MtrunA17_Chr4g0034901 34.764 466 269 17 5 449 8 459 9.42e-70 229
Msa0056000 MtrunA17_Chr8g0339191 33.263 472 276 17 8 453 4 462 3.72e-68 225
Msa0056000 MtrunA17_Chr1g0161011 34.802 454 268 16 11 449 5 445 1.54e-67 224
Msa0056000 MtrunA17_Chr4g0046311 33.772 456 274 17 8 443 4 451 5.91e-67 222
Msa0056000 MtrunA17_Chr8g0389741 32.494 437 269 14 27 449 28 452 2.92e-63 213
Msa0056000 MtrunA17_Chr6g0487261 31.590 459 286 14 6 449 9 454 5.62e-63 213
Msa0056000 MtrunA17_Chr8g0378621 30.983 468 284 15 1 449 1 448 1.93e-62 211
Msa0056000 MtrunA17_Chr3g0144531 32.569 436 272 15 27 449 28 454 8.23e-60 203
Msa0056000 MtrunA17_Chr5g0434591 32.599 454 275 17 12 449 6 444 1.81e-59 203
Msa0056000 MtrunA17_Chr1g0177171 30.472 466 276 15 23 449 34 490 5.46e-59 202
Msa0056000 MtrunA17_Chr3g0121271 29.654 462 296 16 1 449 1 446 6.08e-59 201
Msa0056000 MtrunA17_Chr3g0110371 31.429 455 283 15 10 449 5 445 2.60e-58 200
Msa0056000 MtrunA17_Chr5g0439251 32.823 457 260 18 20 443 18 460 2.50e-57 197
Msa0056000 MtrunA17_Chr7g0234821 30.769 442 276 16 28 449 27 458 1.17e-56 194
Msa0056000 MtrunA17_Chr4g0003281 37.069 348 198 11 10 344 18 357 7.21e-56 191
Msa0056000 MtrunA17_Chr1g0146831 38.081 344 184 15 12 344 16 341 1.69e-54 187
Msa0056000 MtrunA17_Chr7g0250301 36.111 324 186 10 27 344 8 316 5.82e-54 183
Msa0056000 MtrunA17_Chr4g0043851 33.903 351 214 13 7 348 11 352 1.52e-53 185
Msa0056000 MtrunA17_Chr7g0223961 33.258 445 266 19 20 447 16 446 2.05e-53 186
Msa0056000 MtrunA17_Chr1g0189111 35.347 331 194 12 23 344 27 346 8.25e-53 183
Msa0056000 MtrunA17_Chr4g0038941 36.842 323 182 13 27 345 52 356 1.78e-50 175
Msa0056000 MtrunA17_Chr2g0294601 32.951 349 220 8 10 354 41 379 4.48e-50 175
Msa0056000 MtrunA17_Chr4g0075031 29.655 435 281 14 27 449 45 466 4.59e-50 178
Msa0056000 MtrunA17_Chr4g0026321 33.516 364 212 15 18 369 18 363 4.70e-50 175
Msa0056000 MtrunA17_Chr2g0294591 33.133 332 213 6 22 352 25 348 2.50e-49 172
Msa0056000 MtrunA17_Chr4g0043511 30.921 456 268 15 27 449 62 503 3.39e-49 176
Msa0056000 MtrunA17_Chr3g0119541 35.780 327 192 10 27 344 26 343 5.18e-49 172
Msa0056000 MtrunA17_Chr4g0064021 35.258 329 195 10 25 344 24 343 9.42e-49 172
Msa0056000 MtrunA17_Chr4g0039071 33.750 320 201 7 27 344 25 335 1.73e-48 171
Msa0056000 MtrunA17_Chr1g0174261 34.932 292 179 7 56 345 1 283 1.47e-46 165
Msa0056000 MtrunA17_Chr2g0285901 33.429 350 211 13 8 346 3 341 3.03e-46 165
Msa0056000 MtrunA17_Chr2g0321511 32.682 358 210 16 9 350 7 349 8.49e-46 164
Msa0056000 MtrunA17_Chr4g0039021 34.323 303 183 9 47 345 1 291 9.81e-44 155
Msa0056000 MtrunA17_Chr4g0038981 31.871 342 210 10 12 345 1 327 3.47e-43 155
Msa0056000 MtrunA17_Chr4g0038961 32.448 339 213 8 8 345 4 327 4.01e-43 155
Msa0056000 MtrunA17_Chr1g0155001 31.661 319 203 9 27 337 24 335 3.39e-41 152
Msa0056000 MtrunA17_Chr4g0038971 30.678 339 219 9 8 345 4 327 1.32e-40 148
Msa0056000 MtrunA17_Chr7g0250321 33.904 292 176 8 8 294 9 288 2.99e-40 146
Msa0056000 MtrunA17_Chr4g0039011 31.875 320 201 10 27 344 42 346 1.23e-39 146
Msa0056000 MtrunA17_Chr5g0436361 28.896 308 197 12 44 342 54 348 8.41e-28 114
Msa0056000 MtrunA17_Chr2g0294581 37.975 158 88 2 22 179 71 218 1.42e-22 97.4
Msa0056000 MtrunA17_Chr4g0018861 33.333 102 63 3 245 345 77 174 3.04e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0056000 AT4G31140.1 66.949 472 154 2 6 477 7 476 0.0 672
Msa0056000 AT5G58090.1 67.366 429 139 1 27 454 22 450 0.0 611
Msa0056000 AT5G20870.1 56.769 458 185 5 8 455 11 465 2.90e-176 504
Msa0056000 AT3G24330.1 53.043 460 209 5 8 462 20 477 1.79e-172 494
Msa0056000 AT1G64760.1 55.530 434 186 5 24 453 22 452 2.20e-166 478
Msa0056000 AT1G64760.2 55.530 434 186 5 24 453 22 452 2.20e-166 478
Msa0056000 AT5G18220.1 51.452 482 213 8 8 476 15 488 4.66e-166 478
Msa0056000 AT2G19440.2 54.018 448 199 5 10 453 4 448 6.39e-166 477
Msa0056000 AT2G19440.1 54.018 448 199 5 10 453 4 448 6.39e-166 477
Msa0056000 AT3G04010.1 54.214 439 195 4 24 458 30 466 7.08e-166 477
Msa0056000 AT5G64790.1 50.557 449 217 3 11 457 14 459 2.24e-163 471
Msa0056000 AT4G17180.1 50.333 451 212 5 3 451 2 442 2.80e-154 447
Msa0056000 AT5G58480.1 43.807 436 239 5 24 458 23 453 1.92e-128 381
Msa0056000 AT2G05790.1 34.423 459 258 16 23 449 21 468 6.41e-69 228
Msa0056000 AT2G01630.1 34.318 440 254 15 27 449 23 444 1.13e-68 228
Msa0056000 AT4G26830.1 32.450 453 280 14 12 449 10 451 3.40e-68 225
Msa0056000 AT2G01630.3 34.713 435 247 16 27 443 23 438 5.75e-68 224
Msa0056000 AT4G26830.2 32.955 440 269 14 25 449 27 455 1.65e-67 223
Msa0056000 AT5G55180.1 31.519 441 277 13 25 449 25 456 1.22e-64 216
Msa0056000 AT5G55180.2 31.724 435 272 13 25 443 25 450 1.18e-63 214
Msa0056000 AT5G56590.1 31.746 441 274 15 25 449 24 453 4.99e-62 210
Msa0056000 AT3G07320.1 32.658 444 269 17 25 449 23 455 7.86e-61 206
Msa0056000 AT3G55430.1 34.086 443 256 22 24 449 26 449 2.72e-60 204
Msa0056000 AT1G66250.1 32.110 436 268 14 27 449 32 452 3.54e-59 203
Msa0056000 AT5G24318.1 31.385 462 282 19 6 450 13 456 5.22e-58 198
Msa0056000 AT3G57270.1 36.025 322 195 7 25 344 25 337 7.21e-58 195
Msa0056000 AT1G11820.2 29.841 439 275 14 27 449 44 465 1.22e-57 199
Msa0056000 AT4G14080.1 30.872 447 270 17 27 449 42 473 1.78e-56 195
Msa0056000 AT5G24318.2 31.429 455 277 19 6 443 13 449 2.68e-56 194
Msa0056000 AT1G11820.3 29.792 433 271 14 27 443 44 459 5.66e-56 194
Msa0056000 AT3G23770.1 31.333 450 267 18 27 449 37 471 6.48e-56 193
Msa0056000 AT3G13560.4 30.717 446 261 15 27 449 26 446 2.23e-55 192
Msa0056000 AT3G13560.1 30.717 446 261 15 27 449 26 446 2.23e-55 192
Msa0056000 AT3G13560.2 30.717 446 261 15 27 449 26 446 2.23e-55 192
Msa0056000 AT3G13560.5 30.717 446 261 15 27 449 26 446 2.23e-55 192
Msa0056000 AT3G13560.3 30.717 446 261 15 27 449 26 446 2.23e-55 192
Msa0056000 AT4G29360.1 29.091 495 298 16 7 460 4 486 2.14e-54 191
Msa0056000 AT2G16230.1 32.037 437 271 14 27 449 25 449 2.16e-54 190
Msa0056000 AT3G57260.1 35.398 339 202 10 8 344 13 336 5.73e-54 184
Msa0056000 AT4G29360.2 29.150 494 297 16 8 460 15 496 6.24e-54 189
Msa0056000 AT3G57260.2 35.398 339 202 10 8 344 29 352 9.86e-54 184
Msa0056000 AT4G34480.1 32.118 439 265 15 27 449 26 447 1.70e-53 187
Msa0056000 AT2G01630.2 33.687 377 216 14 27 388 23 380 3.49e-53 184
Msa0056000 AT3G15800.1 34.615 338 208 9 14 344 30 361 2.34e-52 182
Msa0056000 AT2G39640.1 33.187 455 266 22 10 451 15 444 2.80e-52 185
Msa0056000 AT4G16260.1 32.184 348 221 9 9 352 4 340 6.01e-52 179
Msa0056000 AT4G18340.2 31.880 367 227 13 6 361 13 367 1.83e-51 179
Msa0056000 AT4G18340.1 31.880 367 227 13 6 361 13 367 4.08e-51 179
Msa0056000 AT4G16260.2 33.227 313 196 8 42 352 10 311 6.48e-50 173
Msa0056000 AT1G33220.1 34.472 322 193 10 6 320 12 322 2.62e-49 172
Msa0056000 AT1G30080.2 31.034 348 219 12 8 344 15 352 1.05e-48 172
Msa0056000 AT1G30080.1 31.034 348 219 12 8 344 15 352 1.17e-48 172
Msa0056000 AT5G20330.1 34.091 352 207 12 4 344 7 344 2.05e-48 170
Msa0056000 AT5G24318.4 33.333 348 211 14 6 346 13 346 2.82e-48 170
Msa0056000 AT5G20390.1 31.884 345 213 11 8 344 13 343 1.99e-47 167
Msa0056000 AT2G27500.2 32.927 328 202 11 26 344 28 346 2.25e-47 168
Msa0056000 AT5G42720.1 35.196 358 209 14 27 373 26 371 2.44e-47 169
Msa0056000 AT2G27500.1 32.927 328 202 11 26 344 28 346 3.52e-47 168
Msa0056000 AT1G32860.1 33.435 329 198 12 27 344 29 347 4.70e-47 168
Msa0056000 AT2G26600.1 33.030 330 203 10 24 344 31 351 8.76e-47 167
Msa0056000 AT5G20340.1 34.154 325 193 11 27 344 43 353 2.52e-46 164
Msa0056000 AT3G57240.1 33.022 321 197 7 24 342 32 336 3.16e-45 161
Msa0056000 AT5G42100.2 33.714 350 205 14 9 346 14 348 2.80e-44 161
Msa0056000 AT5G42100.1 33.714 350 205 14 9 346 14 348 3.23e-44 160
Msa0056000 AT4G34480.2 35.737 319 189 10 27 337 26 336 2.64e-43 157
Msa0056000 AT1G11820.1 29.545 352 219 11 27 365 44 379 1.71e-42 155
Msa0056000 AT3G61810.1 31.212 330 200 10 27 344 55 369 1.55e-41 152
Msa0056000 AT1G77780.1 29.345 351 229 8 8 351 1 339 3.95e-39 145
Msa0056000 AT5G20560.1 29.851 335 216 9 6 334 13 334 8.40e-39 144
Msa0056000 AT1G77790.1 29.859 355 224 12 1 344 1 341 1.13e-36 138
Msa0056000 AT2G27500.3 32.727 275 167 11 77 342 1 266 8.31e-35 132
Msa0056000 AT4G34480.3 31.232 349 209 14 117 449 3 336 1.32e-34 134
Msa0056000 AT3G46570.1 32.759 348 207 14 10 346 13 344 1.90e-34 132
Msa0056000 AT5G24318.3 29.358 327 205 13 140 450 1 317 1.36e-33 129
Msa0056000 AT3G55780.1 26.426 333 218 10 27 344 31 351 3.06e-33 130
Msa0056000 AT2G26600.2 32.707 266 161 10 88 344 1 257 1.15e-31 123

Find 131 sgRNAs with CRISPR-Local

Find 243 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTAAATACTATTAAGATTC+TGG 0.143368 1_2:-11462753 Msa0056000:three_prime_UTR
TTCAAAGCATCAAGAATATT+TGG 0.148229 1_2:+11465547 None:intergenic
TGCATAGTCGACTGGAAAAT+TGG 0.169551 1_2:+11463545 None:intergenic
ACCGATCTCTCCAACAATTA+TGG 0.179022 1_2:+11463404 None:intergenic
ATCTTTCCGTTGTCGTTTAA+AGG 0.202599 1_2:+11463501 None:intergenic
CGCTCTTATAAAAGCTGGTT+TGG 0.202719 1_2:-11463754 Msa0056000:CDS
GACTAGTGCAGTCTGCATTT+TGG 0.234926 1_2:+11463025 None:intergenic
GGATAAATGTTCACGGTAAA+TGG 0.262811 1_2:+11463591 None:intergenic
AAATGATTTGCTTTATACTA+TGG 0.263703 1_2:-11465491 Msa0056000:CDS
TTTGAAGAAATCTGGTATTC+AGG 0.267033 1_2:-11465530 Msa0056000:CDS
TCTCAATGGAGTCCCCTTTC+CGG 0.272611 1_2:+11463302 None:intergenic
GACAAAATTTCCTTAAAATC+TGG 0.273106 1_2:-11462638 Msa0056000:three_prime_UTR
CTTGATGCTTTGAAGAAATC+TGG 0.297702 1_2:-11465538 Msa0056000:CDS
TTTCAAAATACACCACTTCT+TGG 0.304045 1_2:+11463101 None:intergenic
CTAACTATGATACTCTAGTA+TGG 0.317827 1_2:-11463458 Msa0056000:CDS
CTTGGTCATTGAATTCTTGA+TGG 0.320126 1_2:-11465752 Msa0056000:exon
AATCAGTTTGGATCATGATT+TGG 0.323082 1_2:+11462842 None:intergenic
TTCTCCTCGCGGAATCAGTT+TGG 0.344088 1_2:+11462830 None:intergenic
GAAATCTGGTATTCAGGTTA+TGG 0.346498 1_2:-11465524 Msa0056000:CDS
TCTTCATAAAGACTAATAAA+AGG 0.350618 1_2:+11463570 None:intergenic
ATAGAGACAGAAAAGGTAAT+TGG 0.352927 1_2:+11466026 None:intergenic
GTGCAACTTGATCACTGTTC+AGG 0.355760 1_2:+11463067 None:intergenic
CAGGTAACTTTGAACGTCAT+TGG 0.361509 1_2:-11463218 Msa0056000:CDS
AGGTAACTTTGAACGTCATT+GGG 0.365853 1_2:-11463217 Msa0056000:CDS
AAAAGATAAACAGATCTCTT+TGG 0.366906 1_2:+11465929 None:intergenic
CATCTGGTGGAGTAGATATC+AGG 0.372328 1_2:-11465411 Msa0056000:intron
CCGATCTCTCCAACAATTAT+GGG 0.378662 1_2:+11463405 None:intergenic
CCAATGGTGAGTTGGTATTT+CGG 0.383764 1_2:+11463171 None:intergenic
GTTTCAGCTCATGTTTCATC+TGG 0.386117 1_2:-11465427 Msa0056000:CDS
ACCCTTCCGATGGCGACTTT+AGG 0.386656 1_2:-11463671 Msa0056000:CDS
GCTTGGGTGAAGGACTAAAA+TGG 0.392891 1_2:+11465846 None:intergenic
TAGCAACTTAAAATAATTGT+TGG 0.399091 1_2:-11462585 Msa0056000:three_prime_UTR
TTCATGACTCGATTTATTGC+CGG 0.399249 1_2:-11463321 Msa0056000:CDS
TTCAAAATACACCACTTCTT+GGG 0.402891 1_2:+11463102 None:intergenic
GTGAAAATGTTAAAAGATAA+TGG 0.403732 1_2:-11465601 Msa0056000:CDS
GTGTTGGAAGTGGGTGGAAT+TGG 0.404650 1_2:-11465673 Msa0056000:CDS
GGGTGGAATTGGAGTGAACT+GGG 0.423782 1_2:-11465662 Msa0056000:CDS
TGGGTGGAATTGGAGTGAAC+TGG 0.426991 1_2:-11465663 Msa0056000:CDS
ACTCGATTTATTGCCGGAAA+GGG 0.427868 1_2:-11463315 Msa0056000:CDS
TCCATTGAGACCTGGTCCTA+TGG 0.429507 1_2:-11463289 Msa0056000:CDS
CCCATAATTGTTGGAGAGAT+CGG 0.432044 1_2:-11463405 Msa0056000:CDS
GATGGCGCTTGCAAATTTCC+CGG 0.432957 1_2:-11462913 Msa0056000:CDS
AACAGATCTCTTTGGATGGC+AGG 0.439544 1_2:+11465937 None:intergenic
GCATAGTCGACTGGAAAATT+GGG 0.440341 1_2:+11463546 None:intergenic
GCTCTTATAAAAGCTGGTTT+GGG 0.442512 1_2:-11463753 Msa0056000:CDS
ATAGTATAAAGCAAATCATT+TGG 0.452724 1_2:+11465493 None:intergenic
GGTAACATGCCCATAATTGT+TGG 0.454864 1_2:-11463414 Msa0056000:CDS
CAAAACGCTCTTATAAAAGC+TGG 0.455309 1_2:-11463759 Msa0056000:CDS
TGCGTTTAATAGCTACTATC+AGG 0.464738 1_2:-11462950 Msa0056000:CDS
CAGGTGAATGATCAGGTTGA+TGG 0.470214 1_2:-11462931 Msa0056000:CDS
TCAGCTCATGTTTCATCTGG+TGG 0.473275 1_2:-11465424 Msa0056000:CDS
CCGTTTCTGTCTCCGTCTGT+AGG 0.478583 1_2:+11463378 None:intergenic
GATGTGTATCAGAGCTCATC+AGG 0.478752 1_2:-11463696 Msa0056000:CDS
CTACTATCAGGTGAATGATC+AGG 0.483380 1_2:-11462938 Msa0056000:CDS
TGATACACATCAGCATTTGA+AGG 0.486649 1_2:+11463708 None:intergenic
GCGTTGAATAAGAATGGCTT+TGG 0.487733 1_2:-11463435 Msa0056000:CDS
AGTTGAAGAAGAGTTTGAAA+GGG 0.489250 1_2:+11465889 None:intergenic
GTTTGAAAGGGTATCTGAAA+AGG 0.491212 1_2:+11465901 None:intergenic
GTCAGTGACAGTAGAAAGAC+CGG 0.491584 1_2:+11462894 None:intergenic
TGACAGAGATCCTTCAACTC+AGG 0.492465 1_2:-11462875 Msa0056000:CDS
AAGTTGAAGAAGAGTTTGAA+AGG 0.492902 1_2:+11465888 None:intergenic
CCGAAATACCAACTCACCAT+TGG 0.493738 1_2:-11463171 Msa0056000:CDS
ATCTCTTTGGATGGCAGGGA+GGG 0.495901 1_2:+11465942 None:intergenic
CCCGTTGGTTCTTGATCCAA+TGG 0.499872 1_2:+11463155 None:intergenic
AATGCAGACTGCACTAGTCT+TGG 0.500089 1_2:-11463021 Msa0056000:CDS
ACCACAGTAGATGGTGGTAA+TGG 0.502268 1_2:+11465622 None:intergenic
TCCATAGGACCAGGTCTCAA+TGG 0.502603 1_2:+11463288 None:intergenic
CAATCTGAACCATGAGATCA+TGG 0.502886 1_2:+11463640 None:intergenic
GTCATTGAATTCTTGATGGA+GGG 0.508940 1_2:-11465748 Msa0056000:exon
GACTCGATTTATTGCCGGAA+AGG 0.519224 1_2:-11463316 Msa0056000:CDS
CAATGACGTTCAAAGTTACC+TGG 0.520270 1_2:+11463219 None:intergenic
GTCCTAAAGTCGCCATCGGA+AGG 0.521014 1_2:+11463669 None:intergenic
TCAAGAACCAACGGGCTAGT+AGG 0.521826 1_2:-11463147 Msa0056000:CDS
TGGAAGTGTTGTGGCTTCAA+AGG 0.524842 1_2:+11463797 None:intergenic
TGGATAAAGTAAACTGCCAA+AGG 0.529569 1_2:-11462714 Msa0056000:three_prime_UTR
TACAAGAGCTGGAAGTGTTG+TGG 0.534283 1_2:+11463788 None:intergenic
GCATAGCATAGAGACAGAAA+AGG 0.535755 1_2:+11466019 None:intergenic
GTATGGGCGTTGAATAAGAA+TGG 0.536944 1_2:-11463441 Msa0056000:CDS
GACAGACATCCATGATCTCA+TGG 0.543777 1_2:-11463649 Msa0056000:CDS
GGCTATGGAACTTCGTGTGG+CGG 0.546145 1_2:-11463000 Msa0056000:CDS
TTCTTGATCCAATGGTGAGT+TGG 0.549706 1_2:+11463163 None:intergenic
GGTCATTGAATTCTTGATGG+AGG 0.549863 1_2:-11465749 Msa0056000:exon
ATCACTGTTCAGGTTCGCTG+AGG 0.550563 1_2:+11463077 None:intergenic
ATTTGCCACATCATCAGTGT+TGG 0.551734 1_2:-11465689 Msa0056000:CDS
TCTGGTATTCAGGTTATGGT+TGG 0.552421 1_2:-11465520 Msa0056000:CDS
ACAGATCTCTTTGGATGGCA+GGG 0.555860 1_2:+11465938 None:intergenic
CACTTCCAACACTGATGATG+TGG 0.559904 1_2:+11465684 None:intergenic
AATAAAAGGATAAATGTTCA+CGG 0.560448 1_2:+11463584 None:intergenic
GATAAACAGATCTCTTTGGA+TGG 0.563729 1_2:+11465933 None:intergenic
AATGTGCAACCCTGAGTTGA+AGG 0.566126 1_2:+11462865 None:intergenic
CTTGGGCAAATGTGCTACTC+CGG 0.568572 1_2:+11463119 None:intergenic
TAATTGTTGGAGAGATCGGT+TGG 0.569155 1_2:-11463401 Msa0056000:CDS
CACATCATCAGTGTTGGAAG+TGG 0.569256 1_2:-11465683 Msa0056000:CDS
ACCATTGGATCAAGAACCAA+CGG 0.573644 1_2:-11463156 Msa0056000:CDS
TAAATCGAGTCATGAAACCT+TGG 0.576604 1_2:+11463328 None:intergenic
GACAGAGATCCTTCAACTCA+GGG 0.576853 1_2:-11462874 Msa0056000:CDS
GTCTGTCCTAAAGTCGCCAT+CGG 0.577196 1_2:+11463665 None:intergenic
TAACTATGATACTCTAGTAT+GGG 0.577250 1_2:-11463457 Msa0056000:CDS
CCGTTGTAAGTTGACAAGAA+AGG 0.578866 1_2:+11463822 None:intergenic
CTAAACAAGTATGCATCCAT+AGG 0.581623 1_2:+11463273 None:intergenic
GACTGCACTAGTCTTGGCTA+TGG 0.584565 1_2:-11463015 Msa0056000:CDS
CCTTTCTTGTCAACTTACAA+CGG 0.587520 1_2:-11463822 Msa0056000:CDS
TCCTAAAGTCGCCATCGGAA+GGG 0.589717 1_2:+11463670 None:intergenic
AACGGGCTAGTAGGTGCTAC+CGG 0.592787 1_2:-11463138 Msa0056000:CDS
GATACACATCAGCATTTGAA+GGG 0.593720 1_2:+11463709 None:intergenic
CTCGATTTATTGCCGGAAAG+GGG 0.594300 1_2:-11463314 Msa0056000:CDS
CCATTGGATCAAGAACCAAC+GGG 0.594581 1_2:-11463155 Msa0056000:CDS
CCTACAGACGGAGACAGAAA+CGG 0.595732 1_2:-11463378 Msa0056000:CDS
TCACTGTTCAGGTTCGCTGA+GGG 0.597689 1_2:+11463078 None:intergenic
CTTGGCTATGGAACTTCGTG+TGG 0.608758 1_2:-11463003 Msa0056000:CDS
AGTGATCCTTTAAACGACAA+CGG 0.610182 1_2:-11463507 Msa0056000:CDS
TCATCAGTGTTGGAAGTGGG+TGG 0.618212 1_2:-11465679 Msa0056000:CDS
TAGCACATTTGCCCAAGAAG+TGG 0.619134 1_2:-11463113 Msa0056000:CDS
AAGTATGCATCCATAGGACC+AGG 0.624541 1_2:+11463279 None:intergenic
TCATCAGGTAACCCTTCCGA+TGG 0.628858 1_2:-11463681 Msa0056000:CDS
GAGATCGGTTGGCCTACAGA+CGG 0.643611 1_2:-11463390 Msa0056000:CDS
GGTAACTTTGAACGTCATTG+GGG 0.647034 1_2:-11463216 Msa0056000:CDS
CAAAGGAAAACTGATTGTTG+AGG 0.649345 1_2:-11462697 Msa0056000:three_prime_UTR
GATCTCTTTGGATGGCAGGG+AGG 0.651852 1_2:+11465941 None:intergenic
GGTAGCACCTACTAGCCCGT+TGG 0.654363 1_2:+11463140 None:intergenic
AAGGGGACTCCATTGAGACC+TGG 0.654522 1_2:-11463297 Msa0056000:CDS
TGGCAAGCATAAGACACACT+CGG 0.661204 1_2:+11463045 None:intergenic
ACATCATCAGTGTTGGAAGT+GGG 0.662999 1_2:-11465682 Msa0056000:CDS
AAGAGATTCGATTCTCCTCG+CGG 0.664201 1_2:+11462819 None:intergenic
TCCATTACCACCATCTACTG+TGG 0.670093 1_2:-11465623 Msa0056000:CDS
GACAACAAAAGCATTCAACC+AGG 0.676173 1_2:-11463237 Msa0056000:CDS
GGTGGAATTGGAGTGAACTG+GGG 0.692379 1_2:-11465661 Msa0056000:CDS
TGTGGCGGTTTAGATATCCG+TGG 0.708567 1_2:-11462985 Msa0056000:CDS
TCAGTGACAGTAGAAAGACC+GGG 0.731431 1_2:+11462895 None:intergenic
ACGCATATGAGATGTTACCA+CGG 0.737125 1_2:+11462968 None:intergenic
TGATCCAAACTGATTCCGCG+AGG 0.757114 1_2:-11462834 Msa0056000:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTACATCAATATAAAA+AGG + chr1_2:11464580-11464599 None:intergenic 10.0%
!!! TTTTATATTGATGTAAAATA+CGG - chr1_2:11464580-11464599 Msa0056000:intron 10.0%
!!! TATTTATTTATTCTGCATTT+TGG - chr1_2:11463314-11463333 Msa0056000:CDS 15.0%
!!! GTAAAAAGTAAACTTTTTTA+TGG + chr1_2:11463386-11463405 None:intergenic 15.0%
!! AAATTAGACAAAATTTATGT+AGG - chr1_2:11463451-11463470 Msa0056000:CDS 15.0%
!! AATTAGACAAAATTTATGTA+GGG - chr1_2:11463452-11463471 Msa0056000:CDS 15.0%
!!! GTTAAATATGATTTTACTTA+GGG + chr1_2:11463651-11463670 None:intergenic 15.0%
!!! AATTCAATTTTGAAGATTAA+TGG - chr1_2:11463981-11464000 Msa0056000:intron 15.0%
!! TTTATATTGATGTAAAATAC+GGG - chr1_2:11464581-11464600 Msa0056000:intron 15.0%
!!! ATTTCATGTAATTTTTTTCA+AGG - chr1_2:11464756-11464775 Msa0056000:intron 15.0%
!! TCAAATATGAAGCTAAAAAA+TGG + chr1_2:11462819-11462838 None:intergenic 20.0%
!!! AAGTTTTGATTTTTTCAACT+TGG - chr1_2:11462852-11462871 Msa0056000:CDS 20.0%
!! GTGAAAATGTTAAAAGATAA+TGG - chr1_2:11463021-11463040 Msa0056000:CDS 20.0%
!! ATAGTATAAAGCAAATCATT+TGG + chr1_2:11463132-11463151 None:intergenic 20.0%
!!! AAATGATTTGCTTTATACTA+TGG - chr1_2:11463131-11463150 Msa0056000:CDS 20.0%
!!! ATCACTATTTTTCTTTTGTA+GGG + chr1_2:11463429-11463448 None:intergenic 20.0%
!!! AATCACTATTTTTCTTTTGT+AGG + chr1_2:11463430-11463449 None:intergenic 20.0%
!!! GGTTAAATATGATTTTACTT+AGG + chr1_2:11463652-11463671 None:intergenic 20.0%
!! TTACTTTACTTGTATATAGA+TGG + chr1_2:11463673-11463692 None:intergenic 20.0%
!! AAACAAATAGAAAAACAAAC+AGG + chr1_2:11464140-11464159 None:intergenic 20.0%
!! TCTACAAATCATAGAATATT+TGG - chr1_2:11464221-11464240 Msa0056000:intron 20.0%
!!! GATTTTTTCAACAACTTTTT+TGG - chr1_2:11464252-11464271 Msa0056000:intron 20.0%
!! TTAATTAAAACATTGACAAC+AGG + chr1_2:11464401-11464420 None:intergenic 20.0%
!!! GTCAATGTTTTAATTAAATG+AGG - chr1_2:11464404-11464423 Msa0056000:intron 20.0%
!!! ATCATATATTTTTCCTTAAC+AGG + chr1_2:11464466-11464485 None:intergenic 20.0%
!!! TTTTTCATTTCTTAATCTGT+TGG - chr1_2:11464644-11464663 Msa0056000:intron 20.0%
!!! TTTTCATTTCTTAATCTGTT+GGG - chr1_2:11464645-11464664 Msa0056000:intron 20.0%
!!! ATTTTTTTCAAGGTATATTG+CGG - chr1_2:11464766-11464785 Msa0056000:intron 20.0%
!! AATAAAAGGATAAATGTTCA+CGG + chr1_2:11465041-11465060 None:intergenic 20.0%
!! TCTTCATAAAGACTAATAAA+AGG + chr1_2:11465055-11465074 None:intergenic 20.0%
!! CTTAAATACTATTAAGATTC+TGG - chr1_2:11465869-11465888 Msa0056000:five_prime_UTR 20.0%
!!! CTGGATTTTTAATTCATTTT+TGG - chr1_2:11465888-11465907 Msa0056000:five_prime_UTR 20.0%
!! TAGCAACTTAAAATAATTGT+TGG - chr1_2:11466037-11466056 Msa0056000:five_prime_UTR 20.0%
!!! ACTTTTATGCTTTAAAAGTG+AGG + chr1_2:11462642-11462661 None:intergenic 25.0%
! AAAAGATAAACAGATCTCTT+TGG + chr1_2:11462696-11462715 None:intergenic 25.0%
!!! TTTTTCTGTTTTTGTTGCTT+GGG + chr1_2:11462795-11462814 None:intergenic 25.0%
!!! TTTTTTCTGTTTTTGTTGCT+TGG + chr1_2:11462796-11462815 None:intergenic 25.0%
!! TTCAAAGCATCAAGAATATT+TGG + chr1_2:11463078-11463097 None:intergenic 25.0%
!! TGTGTTGAGTTTTTAATCTT+TGG - chr1_2:11463257-11463276 Msa0056000:CDS 25.0%
!! ATATGATTTTACTTAGGGAA+GGG + chr1_2:11463646-11463665 None:intergenic 25.0%
!! AATATGATTTTACTTAGGGA+AGG + chr1_2:11463647-11463666 None:intergenic 25.0%
!! CAACACATCAAGTATTTTAT+TGG - chr1_2:11463756-11463775 Msa0056000:CDS 25.0%
!! ACATCAAGTATTTTATTGGA+AGG - chr1_2:11463760-11463779 Msa0056000:CDS 25.0%
!! AAGTATTTTATTGGAAGGAA+AGG - chr1_2:11463765-11463784 Msa0056000:CDS 25.0%
!! AGTATTTTATTGGAAGGAAA+GGG - chr1_2:11463766-11463785 Msa0056000:CDS 25.0%
!! TTTAGTAAGAAAGTTTTTGC+AGG - chr1_2:11463818-11463837 Msa0056000:CDS 25.0%
!! TTTTTGCAGGAACTTTTTAT+AGG - chr1_2:11463831-11463850 Msa0056000:CDS 25.0%
! ATTTGTAGATGAAGAATCAA+GGG + chr1_2:11464210-11464229 None:intergenic 25.0%
! TGATTAAATTTAGCTGCAAA+AGG - chr1_2:11464325-11464344 Msa0056000:intron 25.0%
! GATTAAATTTAGCTGCAAAA+GGG - chr1_2:11464326-11464345 Msa0056000:intron 25.0%
!! ATATGTCTTCCTAACTTTTT+GGG - chr1_2:11464522-11464541 Msa0056000:intron 25.0%
! AGTCATTTGTTTAACAGTTA+AGG + chr1_2:11464684-11464703 None:intergenic 25.0%
! TAACTATGATACTCTAGTAT+GGG - chr1_2:11465165-11465184 Msa0056000:intron 25.0%
!!! AATAGTACTGTTTGCTTTTT+TGG - chr1_2:11465828-11465847 Msa0056000:five_prime_UTR 25.0%
! GACAAAATTTCCTTAAAATC+TGG - chr1_2:11465984-11466003 Msa0056000:five_prime_UTR 25.0%
!! AATCTGAATTCCAGATTTTA+AGG + chr1_2:11465997-11466016 None:intergenic 25.0%
ATAGAGACAGAAAAGGTAAT+TGG + chr1_2:11462599-11462618 None:intergenic 30.0%
AGTTGAAGAAGAGTTTGAAA+GGG + chr1_2:11462736-11462755 None:intergenic 30.0%
AAGTTGAAGAAGAGTTTGAA+AGG + chr1_2:11462737-11462756 None:intergenic 30.0%
TGATGGAGGGTAAAAAATTT+AGG - chr1_2:11462887-11462906 Msa0056000:CDS 30.0%
TTTGAAGAAATCTGGTATTC+AGG - chr1_2:11463092-11463111 Msa0056000:CDS 30.0%
GGTTATGATTGTTTCAAACT+AGG - chr1_2:11463335-11463354 Msa0056000:CDS 30.0%
AGTGAAGACATATTTAACCA+AGG - chr1_2:11463512-11463531 Msa0056000:CDS 30.0%
GTGAAGACATATTTAACCAA+GGG - chr1_2:11463513-11463532 Msa0056000:CDS 30.0%
GACAAGTAATTTCCATACAT+CGG + chr1_2:11464050-11464069 None:intergenic 30.0%
! TGTGTTTGAAATCATTGACT+AGG - chr1_2:11464104-11464123 Msa0056000:intron 30.0%
AGTTATAATGTCTGCCAAAA+AGG - chr1_2:11464178-11464197 Msa0056000:intron 30.0%
TTTGTAGATGAAGAATCAAG+GGG + chr1_2:11464209-11464228 None:intergenic 30.0%
GATTTGTAGATGAAGAATCA+AGG + chr1_2:11464211-11464230 None:intergenic 30.0%
! AGATTTTATGCATGCAACAA+AGG + chr1_2:11464494-11464513 None:intergenic 30.0%
GTTGCATGCATAAAATCTAA+AGG - chr1_2:11464496-11464515 Msa0056000:intron 30.0%
! GATATGTCTTCCTAACTTTT+TGG - chr1_2:11464521-11464540 Msa0056000:intron 30.0%
! TATGTCTTCCTAACTTTTTG+GGG - chr1_2:11464523-11464542 Msa0056000:intron 30.0%
! TTTTGGATATTTACAAGAGC+TGG + chr1_2:11464848-11464867 None:intergenic 30.0%
CTAACTATGATACTCTAGTA+TGG - chr1_2:11465164-11465183 Msa0056000:intron 30.0%
!! GATTGTTTTATTACGATGGA+CGG - chr1_2:11465428-11465447 Msa0056000:CDS 30.0%
TTCAAAATACACCACTTCTT+GGG + chr1_2:11465523-11465542 None:intergenic 30.0%
TTTCAAAATACACCACTTCT+TGG + chr1_2:11465524-11465543 None:intergenic 30.0%
AATCAGTTTGGATCATGATT+TGG + chr1_2:11465783-11465802 None:intergenic 30.0%
!!! GGAGGGACTTTTTTATGTTA+TGG + chr1_2:11462666-11462685 None:intergenic 35.0%
GATAAACAGATCTCTTTGGA+TGG + chr1_2:11462692-11462711 None:intergenic 35.0%
!! GTTTGAAAGGGTATCTGAAA+AGG + chr1_2:11462724-11462743 None:intergenic 35.0%
CTTGGTCATTGAATTCTTGA+TGG - chr1_2:11462870-11462889 Msa0056000:CDS 35.0%
GTCATTGAATTCTTGATGGA+GGG - chr1_2:11462874-11462893 Msa0056000:CDS 35.0%
! AACATTTTCACCACAGTAGA+TGG + chr1_2:11463012-11463031 None:intergenic 35.0%
!! CTTGATGCTTTGAAGAAATC+TGG - chr1_2:11463084-11463103 Msa0056000:CDS 35.0%
! GAAATCTGGTATTCAGGTTA+TGG - chr1_2:11463098-11463117 Msa0056000:CDS 35.0%
TGATTGTTTCAAACTAGGAG+AGG - chr1_2:11463340-11463359 Msa0056000:CDS 35.0%
TCTCTTGAACAATTCGTCTT+TGG + chr1_2:11463567-11463586 None:intergenic 35.0%
! TGCAGGAACTTTTTATAGGA+TGG - chr1_2:11463835-11463854 Msa0056000:CDS 35.0%
AGTATGTATTGCTGTGAGTT+TGG - chr1_2:11463923-11463942 Msa0056000:intron 35.0%
ACTAAGATACTTCCGATGTA+TGG - chr1_2:11464035-11464054 Msa0056000:intron 35.0%
GAAATTACTTGTCGTTCCTT+TGG - chr1_2:11464057-11464076 Msa0056000:intron 35.0%
GATTCCACTAAGTATTCCAA+AGG + chr1_2:11464076-11464095 None:intergenic 35.0%
!! CAACAGGTTGATATTTGTAC+AGG + chr1_2:11464385-11464404 None:intergenic 35.0%
AATTTCACACTGACCTGTTA+AGG - chr1_2:11464450-11464469 Msa0056000:intron 35.0%
! ATGTCTTCCTAACTTTTTGG+GGG - chr1_2:11464524-11464543 Msa0056000:intron 35.0%
ATGTAAAATACGGGCAATTG+CGG - chr1_2:11464590-11464609 Msa0056000:intron 35.0%
!! TTTTCAAGGTATATTGCGGT+TGG - chr1_2:11464770-11464789 Msa0056000:intron 35.0%
CCTTTCTTGTCAACTTACAA+CGG - chr1_2:11464800-11464819 Msa0056000:intron 35.0%
!!! CAGCTTTTATAAGAGCGTTT+TGG + chr1_2:11464865-11464884 None:intergenic 35.0%
CAAAACGCTCTTATAAAAGC+TGG - chr1_2:11464863-11464882 Msa0056000:intron 35.0%
! GCTCTTATAAAAGCTGGTTT+GGG - chr1_2:11464869-11464888 Msa0056000:intron 35.0%
GATACACATCAGCATTTGAA+GGG + chr1_2:11464916-11464935 None:intergenic 35.0%
TGATACACATCAGCATTTGA+AGG + chr1_2:11464917-11464936 None:intergenic 35.0%
GGATAAATGTTCACGGTAAA+TGG + chr1_2:11465034-11465053 None:intergenic 35.0%
TTGAAAAATGCATAGTCGAC+TGG + chr1_2:11465088-11465107 None:intergenic 35.0%
!! GTCGACTATGCATTTTTCAA+CGG - chr1_2:11465088-11465107 Msa0056000:intron 35.0%
AGTGATCCTTTAAACGACAA+CGG - chr1_2:11465115-11465134 Msa0056000:intron 35.0%
! ATCTTTCCGTTGTCGTTTAA+AGG + chr1_2:11465124-11465143 None:intergenic 35.0%
TAAATCGAGTCATGAAACCT+TGG + chr1_2:11465297-11465316 None:intergenic 35.0%
TTCATGACTCGATTTATTGC+CGG - chr1_2:11465301-11465320 Msa0056000:intron 35.0%
CTAAACAAGTATGCATCCAT+AGG + chr1_2:11465352-11465371 None:intergenic 35.0%
AGGTAACTTTGAACGTCATT+GGG - chr1_2:11465405-11465424 Msa0056000:intron 35.0%
!! TGGGGATTGTTTTATTACGA+TGG - chr1_2:11465424-11465443 Msa0056000:CDS 35.0%
TGCGTTTAATAGCTACTATC+AGG - chr1_2:11465672-11465691 Msa0056000:CDS 35.0%
TGGATAAAGTAAACTGCCAA+AGG - chr1_2:11465908-11465927 Msa0056000:five_prime_UTR 35.0%
! CTCAACAATCAGTTTTCCTT+TGG + chr1_2:11465927-11465946 None:intergenic 35.0%
CAAAGGAAAACTGATTGTTG+AGG - chr1_2:11465925-11465944 Msa0056000:five_prime_UTR 35.0%
GCATAGCATAGAGACAGAAA+AGG + chr1_2:11462606-11462625 None:intergenic 40.0%
!! TGTTTTTGTTGCTTGGGTGA+AGG + chr1_2:11462789-11462808 None:intergenic 40.0%
GGTCATTGAATTCTTGATGG+AGG - chr1_2:11462873-11462892 Msa0056000:CDS 40.0%
ATTTGCCACATCATCAGTGT+TGG - chr1_2:11462933-11462952 Msa0056000:CDS 40.0%
! ACATCATCAGTGTTGGAAGT+GGG - chr1_2:11462940-11462959 Msa0056000:CDS 40.0%
! ATTTTCACCACAGTAGATGG+TGG + chr1_2:11463009-11463028 None:intergenic 40.0%
! TCTGGTATTCAGGTTATGGT+TGG - chr1_2:11463102-11463121 Msa0056000:CDS 40.0%
TCGTCAAGCTGCTGAAAAAT+GGG - chr1_2:11463161-11463180 Msa0056000:CDS 40.0%
GTTTCAGCTCATGTTTCATC+TGG - chr1_2:11463195-11463214 Msa0056000:CDS 40.0%
GGAGAGGTGAGAAATTATAG+TGG - chr1_2:11463356-11463375 Msa0056000:CDS 40.0%
!! CGTTCCTTTGGAATACTTAG+TGG - chr1_2:11464069-11464088 Msa0056000:intron 40.0%
GATATTTGTACAGGTGGACA+AGG + chr1_2:11464376-11464395 None:intergenic 40.0%
!! CAGGTTGATATTTGTACAGG+TGG + chr1_2:11464382-11464401 None:intergenic 40.0%
TGTAAAATACGGGCAATTGC+GGG - chr1_2:11464591-11464610 Msa0056000:intron 40.0%
! CCGTTGTAAGTTGACAAGAA+AGG + chr1_2:11464803-11464822 None:intergenic 40.0%
CGCTCTTATAAAAGCTGGTT+TGG - chr1_2:11464868-11464887 Msa0056000:intron 40.0%
CAATCTGAACCATGAGATCA+TGG + chr1_2:11464985-11465004 None:intergenic 40.0%
GCATAGTCGACTGGAAAATT+GGG + chr1_2:11465079-11465098 None:intergenic 40.0%
TGCATAGTCGACTGGAAAAT+TGG + chr1_2:11465080-11465099 None:intergenic 40.0%
!! GTATGGGCGTTGAATAAGAA+TGG - chr1_2:11465181-11465200 Msa0056000:intron 40.0%
GCGTTGAATAAGAATGGCTT+TGG - chr1_2:11465187-11465206 Msa0056000:intron 40.0%
GGTAACATGCCCATAATTGT+TGG - chr1_2:11465208-11465227 Msa0056000:intron 40.0%
CCGATCTCTCCAACAATTAT+GGG + chr1_2:11465220-11465239 None:intergenic 40.0%
CCCATAATTGTTGGAGAGAT+CGG - chr1_2:11465217-11465236 Msa0056000:intron 40.0%
ACCGATCTCTCCAACAATTA+TGG + chr1_2:11465221-11465240 None:intergenic 40.0%
TAATTGTTGGAGAGATCGGT+TGG - chr1_2:11465221-11465240 Msa0056000:intron 40.0%
ACTCGATTTATTGCCGGAAA+GGG - chr1_2:11465307-11465326 Msa0056000:intron 40.0%
!! GACAACAAAAGCATTCAACC+AGG - chr1_2:11465385-11465404 Msa0056000:intron 40.0%
CAATGACGTTCAAAGTTACC+TGG + chr1_2:11465406-11465425 None:intergenic 40.0%
CAGGTAACTTTGAACGTCAT+TGG - chr1_2:11465404-11465423 Msa0056000:intron 40.0%
GGTAACTTTGAACGTCATTG+GGG - chr1_2:11465406-11465425 Msa0056000:intron 40.0%
!! CCAATGGTGAGTTGGTATTT+CGG + chr1_2:11465454-11465473 None:intergenic 40.0%
TTCTTGATCCAATGGTGAGT+TGG + chr1_2:11465462-11465481 None:intergenic 40.0%
ACCATTGGATCAAGAACCAA+CGG - chr1_2:11465466-11465485 Msa0056000:CDS 40.0%
ACGCATATGAGATGTTACCA+CGG + chr1_2:11465657-11465676 None:intergenic 40.0%
CTACTATCAGGTGAATGATC+AGG - chr1_2:11465684-11465703 Msa0056000:CDS 40.0%
ACAGATCTCTTTGGATGGCA+GGG + chr1_2:11462687-11462706 None:intergenic 45.0%
AACAGATCTCTTTGGATGGC+AGG + chr1_2:11462688-11462707 None:intergenic 45.0%
GCTTGGGTGAAGGACTAAAA+TGG + chr1_2:11462779-11462798 None:intergenic 45.0%
! CACTTCCAACACTGATGATG+TGG + chr1_2:11462941-11462960 None:intergenic 45.0%
! CACATCATCAGTGTTGGAAG+TGG - chr1_2:11462939-11462958 Msa0056000:CDS 45.0%
TCCATTACCACCATCTACTG+TGG - chr1_2:11462999-11463018 Msa0056000:CDS 45.0%
! ACCACAGTAGATGGTGGTAA+TGG + chr1_2:11463003-11463022 None:intergenic 45.0%
GTCGTCAAGCTGCTGAAAAA+TGG - chr1_2:11463160-11463179 Msa0056000:CDS 45.0%
TCAGCTCATGTTTCATCTGG+TGG - chr1_2:11463198-11463217 Msa0056000:CDS 45.0%
CATCTGGTGGAGTAGATATC+AGG - chr1_2:11463211-11463230 Msa0056000:CDS 45.0%
TGGTGGAGTAGATATCAGGT+TGG - chr1_2:11463215-11463234 Msa0056000:CDS 45.0%
!! ACTTCTAGAGCTCAATCCCT+TGG + chr1_2:11463532-11463551 None:intergenic 45.0%
TGACGGCCAACCAAATTACA+AGG - chr1_2:11463619-11463638 Msa0056000:CDS 45.0%
GACGGCCAACCAAATTACAA+GGG - chr1_2:11463620-11463639 Msa0056000:CDS 45.0%
AAGGGCCCTTGTAATTTGGT+TGG + chr1_2:11463628-11463647 None:intergenic 45.0%
GAGTCAAATGCAGAAGAGAG+GGG + chr1_2:11463887-11463906 None:intergenic 45.0%
CGAGTCAAATGCAGAAGAGA+GGG + chr1_2:11463888-11463907 None:intergenic 45.0%
CCTCTCTTCTGCATTTGACT+CGG - chr1_2:11463886-11463905 Msa0056000:intron 45.0%
TGTATTGCTGTGAGTTTGGC+AGG - chr1_2:11463927-11463946 Msa0056000:intron 45.0%
!! ATCAAGGGGCATGTCCTTTT+TGG + chr1_2:11464195-11464214 None:intergenic 45.0%
CTTGCTTGCACTGAATTCAG+TGG - chr1_2:11464295-11464314 Msa0056000:intron 45.0%
GTACAGGTGGACAAGGATTT+AGG + chr1_2:11464369-11464388 None:intergenic 45.0%
GTAAAATACGGGCAATTGCG+GGG - chr1_2:11464592-11464611 Msa0056000:intron 45.0%
!! TGGAAGTGTTGTGGCTTCAA+AGG + chr1_2:11464828-11464847 None:intergenic 45.0%
!! TACAAGAGCTGGAAGTGTTG+TGG + chr1_2:11464837-11464856 None:intergenic 45.0%
GATGTGTATCAGAGCTCATC+AGG - chr1_2:11464926-11464945 Msa0056000:intron 45.0%
GACAGACATCCATGATCTCA+TGG - chr1_2:11464973-11464992 Msa0056000:intron 45.0%
GACTCGATTTATTGCCGGAA+AGG - chr1_2:11465306-11465325 Msa0056000:intron 45.0%
CTCGATTTATTGCCGGAAAG+GGG - chr1_2:11465308-11465327 Msa0056000:intron 45.0%
AAGTATGCATCCATAGGACC+AGG + chr1_2:11465346-11465365 None:intergenic 45.0%
CCGAAATACCAACTCACCAT+TGG - chr1_2:11465451-11465470 Msa0056000:CDS 45.0%
CCATTGGATCAAGAACCAAC+GGG - chr1_2:11465467-11465486 Msa0056000:CDS 45.0%
TAGCACATTTGCCCAAGAAG+TGG - chr1_2:11465509-11465528 Msa0056000:CDS 45.0%
GTGCAACTTGATCACTGTTC+AGG + chr1_2:11465558-11465577 None:intergenic 45.0%
TGGCAAGCATAAGACACACT+CGG + chr1_2:11465580-11465599 None:intergenic 45.0%
! GACTAGTGCAGTCTGCATTT+TGG + chr1_2:11465600-11465619 None:intergenic 45.0%
! AATGCAGACTGCACTAGTCT+TGG - chr1_2:11465601-11465620 Msa0056000:CDS 45.0%
!! CAGGTGAATGATCAGGTTGA+TGG - chr1_2:11465691-11465710 Msa0056000:CDS 45.0%
TCAGTGACAGTAGAAAGACC+GGG + chr1_2:11465730-11465749 None:intergenic 45.0%
GTCAGTGACAGTAGAAAGAC+CGG + chr1_2:11465731-11465750 None:intergenic 45.0%
TGACAGAGATCCTTCAACTC+AGG - chr1_2:11465747-11465766 Msa0056000:exon 45.0%
GACAGAGATCCTTCAACTCA+GGG - chr1_2:11465748-11465767 Msa0056000:exon 45.0%
! AATGTGCAACCCTGAGTTGA+AGG + chr1_2:11465760-11465779 None:intergenic 45.0%
AAGAGATTCGATTCTCCTCG+CGG + chr1_2:11465806-11465825 None:intergenic 45.0%
ATCTCTTTGGATGGCAGGGA+GGG + chr1_2:11462683-11462702 None:intergenic 50.0%
! TCATCAGTGTTGGAAGTGGG+TGG - chr1_2:11462943-11462962 Msa0056000:CDS 50.0%
GTGTTGGAAGTGGGTGGAAT+TGG - chr1_2:11462949-11462968 Msa0056000:CDS 50.0%
TGGGTGGAATTGGAGTGAAC+TGG - chr1_2:11462959-11462978 Msa0056000:CDS 50.0%
GGGTGGAATTGGAGTGAACT+GGG - chr1_2:11462960-11462979 Msa0056000:CDS 50.0%
GGTGGAATTGGAGTGAACTG+GGG - chr1_2:11462961-11462980 Msa0056000:CDS 50.0%
GAGAACCTGAGTTCGATTCC+TGG - chr1_2:11463583-11463602 Msa0056000:CDS 50.0%
ACCTGAGTTCGATTCCTGGT+TGG - chr1_2:11463587-11463606 Msa0056000:CDS 50.0%
CCTGAGTTCGATTCCTGGTT+GGG - chr1_2:11463588-11463607 Msa0056000:CDS 50.0%
CTGGTTGGGACGATTCTTGA+CGG - chr1_2:11463602-11463621 Msa0056000:CDS 50.0%
AGGGAAGGGCCCTTGTAATT+TGG + chr1_2:11463632-11463651 None:intergenic 50.0%
CCGAGTCAAATGCAGAAGAG+AGG + chr1_2:11463889-11463908 None:intergenic 50.0%
CACTCAGCCCCCAAAAAGTT+AGG + chr1_2:11464534-11464553 None:intergenic 50.0%
TCATCAGGTAACCCTTCCGA+TGG - chr1_2:11464941-11464960 Msa0056000:intron 50.0%
TCCTAAAGTCGCCATCGGAA+GGG + chr1_2:11464955-11464974 None:intergenic 50.0%
GTCTGTCCTAAAGTCGCCAT+CGG + chr1_2:11464960-11464979 None:intergenic 50.0%
CCTACAGACGGAGACAGAAA+CGG - chr1_2:11465244-11465263 Msa0056000:intron 50.0%
!! CTCGCGCAACGTTTTAACCA+AGG - chr1_2:11465277-11465296 Msa0056000:intron 50.0%
TCTCAATGGAGTCCCCTTTC+CGG + chr1_2:11465323-11465342 None:intergenic 50.0%
TCCATTGAGACCTGGTCCTA+TGG - chr1_2:11465333-11465352 Msa0056000:intron 50.0%
TCCATAGGACCAGGTCTCAA+TGG + chr1_2:11465337-11465356 None:intergenic 50.0%
!! CCCGTTGGTTCTTGATCCAA+TGG + chr1_2:11465470-11465489 None:intergenic 50.0%
!! TCAAGAACCAACGGGCTAGT+AGG - chr1_2:11465475-11465494 Msa0056000:CDS 50.0%
! CTTGGGCAAATGTGCTACTC+CGG + chr1_2:11465506-11465525 None:intergenic 50.0%
! TCACTGTTCAGGTTCGCTGA+GGG + chr1_2:11465547-11465566 None:intergenic 50.0%
! ATCACTGTTCAGGTTCGCTG+AGG + chr1_2:11465548-11465567 None:intergenic 50.0%
!! GACTGCACTAGTCTTGGCTA+TGG - chr1_2:11465607-11465626 Msa0056000:CDS 50.0%
CTTGGCTATGGAACTTCGTG+TGG - chr1_2:11465619-11465638 Msa0056000:CDS 50.0%
TGTGGCGGTTTAGATATCCG+TGG - chr1_2:11465637-11465656 Msa0056000:CDS 50.0%
GATGGCGCTTGCAAATTTCC+CGG - chr1_2:11465709-11465728 Msa0056000:CDS 50.0%
! TGATCCAAACTGATTCCGCG+AGG - chr1_2:11465788-11465807 Msa0056000:five_prime_UTR 50.0%
TTCTCCTCGCGGAATCAGTT+TGG + chr1_2:11465795-11465814 None:intergenic 50.0%
GATCTCTTTGGATGGCAGGG+AGG + chr1_2:11462684-11462703 None:intergenic 55.0%
CCCAACCAGGAATCGAACTC+AGG + chr1_2:11463591-11463610 None:intergenic 55.0%
CGTCAAGAATCGTCCCAACC+AGG + chr1_2:11463604-11463623 None:intergenic 55.0%
!! CTTTTTGGGGGCTGAGTGCA+TGG - chr1_2:11464536-11464555 Msa0056000:intron 55.0%
ACCCTTCCGATGGCGACTTT+AGG - chr1_2:11464951-11464970 Msa0056000:intron 55.0%
GTCCTAAAGTCGCCATCGGA+AGG + chr1_2:11464956-11464975 None:intergenic 55.0%
!! GAGATCGGTTGGCCTACAGA+CGG - chr1_2:11465232-11465251 Msa0056000:intron 55.0%
CCGTTTCTGTCTCCGTCTGT+AGG + chr1_2:11465247-11465266 None:intergenic 55.0%
AAGGGGACTCCATTGAGACC+TGG - chr1_2:11465325-11465344 Msa0056000:intron 55.0%
!! AACGGGCTAGTAGGTGCTAC+CGG - chr1_2:11465484-11465503 Msa0056000:CDS 55.0%
GGCTATGGAACTTCGTGTGG+CGG - chr1_2:11465622-11465641 Msa0056000:CDS 55.0%
GGTAGCACCTACTAGCCCGT+TGG + chr1_2:11465485-11465504 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 11462584 11466060 11462584 ID=Msa0056000;Name=Msa0056000
chr1_2 mRNA 11462584 11466060 11462584 ID=Msa0056000-mRNA-1;Parent=Msa0056000;Name=Msa0056000-mRNA-1;_AED=0.00;_eAED=0.00;_QI=305|1|1|1|1|1|2|193|477
chr1_2 exon 11462584 11463866 11462584 ID=Msa0056000-mRNA-1:exon:4349;Parent=Msa0056000-mRNA-1
chr1_2 exon 11465412 11466060 11465412 ID=Msa0056000-mRNA-1:exon:4348;Parent=Msa0056000-mRNA-1
chr1_2 five_prime_UTR 11465756 11466060 11465756 ID=Msa0056000-mRNA-1:five_prime_utr;Parent=Msa0056000-mRNA-1
chr1_2 CDS 11465412 11465755 11465412 ID=Msa0056000-mRNA-1:cds;Parent=Msa0056000-mRNA-1
chr1_2 CDS 11462777 11463866 11462777 ID=Msa0056000-mRNA-1:cds;Parent=Msa0056000-mRNA-1
chr1_2 three_prime_UTR 11462584 11462776 11462584 ID=Msa0056000-mRNA-1:three_prime_utr;Parent=Msa0056000-mRNA-1
Gene Sequence

>Msa0056000

ATGGAGGGTAAAAAATTTAGGATATGTTTAGTTCTTATGATGTTATTTGCCACATCATCAGTGTTGGAAGTGGGTGGAATTGGAGTGAACTGGGGAACACAGTCAACACATCCATTACCACCATCTACTGTGGTGAAAATGTTAAAAGATAATGGTATTCAAAAAGTTAAGCTTTTTGATGCTGATCCAAATATTCTTGATGCTTTGAAGAAATCTGGTATTCAGGTTATGGTTGGTATACCAAATGATTTGCTTTATACTATGGCTAATAGTCGTCAAGCTGCTGAAAAATGGGTTGCTAAGAATGTTTCAGCTCATGTTTCATCTGGTGGAGTAGATATCAGGTATATTGCGGTTGGAAATGAACCTTTCTTGTCAACTTACAACGGTACCTTTGAAGCCACAACACTTCCAGCTCTTGTAAATATCCAAAACGCTCTTATAAAAGCTGGTTTGGGAAGTTCAATCAAAGTCACTGTCCCTTCAAATGCTGATGTGTATCAGAGCTCATCAGGTAACCCTTCCGATGGCGACTTTAGGACAGACATCCATGATCTCATGGTTCAGATTGTCAAGTTTTTGAGTCAGAACAATGCTCCATTTACCGTGAACATTTATCCTTTTATTAGTCTTTATGAAGATCCCAATTTTCCAGTCGACTATGCATTTTTCAACGGTTTTAGTGATCCTTTAAACGACAACGGAAAGATCTACGACAATGTCTTTGATGCTAACTATGATACTCTAGTATGGGCGTTGAATAAGAATGGCTTTGGTAACATGCCCATAATTGTTGGAGAGATCGGTTGGCCTACAGACGGAGACAGAAACGGAAATCTTCAACTCGCGCAACGTTTTAACCAAGGTTTCATGACTCGATTTATTGCCGGAAAGGGGACTCCATTGAGACCTGGTCCTATGGATGCATACTTGTTTAGTTTAGTAGATGAAGACAACAAAAGCATTCAACCAGGTAACTTTGAACGTCATTGGGGATTGTTTTATTACGATGGACGGCCGAAATACCAACTCACCATTGGATCAAGAACCAACGGGCTAGTAGGTGCTACCGGAGTAGCACATTTGCCCAAGAAGTGGTGTATTTTGAAACCCTCAGCGAACCTGAACAGTGATCAAGTTGCACCGAGTGTGTCTTATGCTTGCCAAAATGCAGACTGCACTAGTCTTGGCTATGGAACTTCGTGTGGCGGTTTAGATATCCGTGGTAACATCTCATATGCGTTTAATAGCTACTATCAGGTGAATGATCAGGTTGATGGCGCTTGCAAATTTCCCGGTCTTTCTACTGTCACTGACAGAGATCCTTCAACTCAGGGTTGCACATTCCAAATCATGATCCAAACTGATTCCGCGAGGAGAATCGAATCTCTTAGAATAGTACTGTTTGCTTTTTTGGTTGTTGCTTTTTTGTAA
Protein sequence

>Msa0056000

MEGKKFRICLVLMMLFATSSVLEVGGIGVNWGTQSTHPLPPSTVVKMLKDNGIQKVKLFDADPNILDALKKSGIQVMVGIPNDLLYTMANSRQAAEKWVAKNVSAHVSSGGVDIRYIAVGNEPFLSTYNGTFEATTLPALVNIQNALIKAGLGSSIKVTVPSNADVYQSSSGNPSDGDFRTDIHDLMVQIVKFLSQNNAPFTVNIYPFISLYEDPNFPVDYAFFNGFSDPLNDNGKIYDNVFDANYDTLVWALNKNGFGNMPIIVGEIGWPTDGDRNGNLQLAQRFNQGFMTRFIAGKGTPLRPGPMDAYLFSLVDEDNKSIQPGNFERHWGLFYYDGRPKYQLTIGSRTNGLVGATGVAHLPKKWCILKPSANLNSDQVAPSVSYACQNADCTSLGYGTSCGGLDIRGNISYAFNSYYQVNDQVDGACKFPGLSTVTDRDPSTQGCTFQIMIQTDSARRIESLRIVLFAFLVVAFL*