Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001620 | XP_003620949.2 | 98.726 | 157 | 2 | 0 | 1 | 157 | 1 | 157 | 1.61e-111 | 323 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001620 | sp|Q8S8N6|PLA2A_ARATH | 65.563 | 151 | 45 | 1 | 7 | 157 | 5 | 148 | 1.98e-70 | 212 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001620 | B7FGW1 | 98.726 | 157 | 2 | 0 | 1 | 157 | 1 | 157 | 7.69e-112 | 323 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021290 | Msa1001620 | 0.836787 | 7.623740e-57 | -8.615850e-47 |
| Msa0021320 | Msa1001620 | 0.831573 | 1.545978e-55 | -8.615850e-47 |
| Msa0033610 | Msa1001620 | 0.801729 | 7.846988e-49 | -8.615850e-47 |
| Msa0045620 | Msa1001620 | 0.841550 | 4.439196e-58 | -8.615850e-47 |
| Msa0055880 | Msa1001620 | 0.813365 | 2.655599e-51 | -8.615850e-47 |
| Msa0056000 | Msa1001620 | 0.814625 | 1.400658e-51 | -8.615850e-47 |
| Msa0089540 | Msa1001620 | 0.828544 | 8.474178e-55 | -8.615850e-47 |
| Msa0100890 | Msa1001620 | 0.800836 | 1.195354e-48 | -8.615850e-47 |
| Msa0623310 | Msa1001620 | 0.820786 | 5.704789e-53 | -8.615850e-47 |
| Msa0652160 | Msa1001620 | 0.803560 | 3.289534e-49 | -8.615850e-47 |
| Msa0658120 | Msa1001620 | 0.828739 | 7.601898e-55 | -8.615850e-47 |
| Msa0689830 | Msa1001620 | 0.821051 | 4.959085e-53 | -8.615850e-47 |
| Msa0702970 | Msa1001620 | 0.823771 | 1.157817e-53 | -8.615850e-47 |
| Msa0767280 | Msa1001620 | 0.837505 | 4.995310e-57 | -8.615850e-47 |
| Msa0790450 | Msa1001620 | 0.800517 | 1.388596e-48 | -8.615850e-47 |
| Msa0134580 | Msa1001620 | 0.806672 | 7.343002e-50 | -8.615850e-47 |
| Msa0153510 | Msa1001620 | 0.814978 | 1.169929e-51 | -8.615850e-47 |
| Msa0173250 | Msa1001620 | 0.814238 | 1.705497e-51 | -8.615850e-47 |
| Msa0188740 | Msa1001620 | 0.800142 | 1.655289e-48 | -8.615850e-47 |
| Msa0192050 | Msa1001620 | 0.800171 | 1.633463e-48 | -8.615850e-47 |
| Msa0192300 | Msa1001620 | 0.844020 | 9.789383e-59 | -8.615850e-47 |
| Msa0195030 | Msa1001620 | 0.821423 | 4.069744e-53 | -8.615850e-47 |
| Msa0237180 | Msa1001620 | 0.826818 | 2.201877e-54 | -8.615850e-47 |
| Msa0371490 | Msa1001620 | 0.824898 | 6.288862e-54 | -8.615850e-47 |
| Msa0378620 | Msa1001620 | -0.801434 | 9.022176e-49 | -8.615850e-47 |
| Msa0385030 | Msa1001620 | 0.823513 | 1.330238e-53 | -8.615850e-47 |
| Msa0388520 | Msa1001620 | 0.812980 | 3.226696e-51 | -8.615850e-47 |
| Msa0416210 | Msa1001620 | 0.838006 | 3.714674e-57 | -8.615850e-47 |
| Msa0430130 | Msa1001620 | 0.804534 | 2.062963e-49 | -8.615850e-47 |
| Msa0432260 | Msa1001620 | -0.821994 | 3.003307e-53 | -8.615850e-47 |
| Msa0433630 | Msa1001620 | 0.804001 | 2.663989e-49 | -8.615850e-47 |
| Msa0436830 | Msa1001620 | -0.812245 | 4.670797e-51 | -8.615850e-47 |
| Msa0450150 | Msa1001620 | 0.808542 | 2.943162e-50 | -8.615850e-47 |
| Msa0467250 | Msa1001620 | 0.816184 | 6.301894e-52 | -8.615850e-47 |
| Msa0469430 | Msa1001620 | 0.825713 | 4.034204e-54 | -8.615850e-47 |
| Msa0476730 | Msa1001620 | -0.800408 | 1.461426e-48 | -8.615850e-47 |
| Msa0987670 | Msa1001620 | 0.829184 | 5.932766e-55 | -8.615850e-47 |
| Msa1001620 | Msa1019180 | 0.800385 | 1.477484e-48 | -8.615850e-47 |
| Msa1001620 | Msa1021560 | 0.805308 | 1.421240e-49 | -8.615850e-47 |
| Msa1001620 | Msa1025200 | 0.812546 | 4.014286e-51 | -8.615850e-47 |
| Msa1001620 | Msa1025220 | 0.813316 | 2.722364e-51 | -8.615850e-47 |
| Msa1001620 | Msa1026710 | 0.807817 | 4.198814e-50 | -8.615850e-47 |
| Msa1001620 | Msa1124210 | 0.830717 | 2.509641e-55 | -8.615850e-47 |
| Msa1001620 | Msa1126690 | 0.814802 | 1.279756e-51 | -8.615850e-47 |
| Msa1001620 | Msa1156830 | 0.800701 | 1.274093e-48 | -8.615850e-47 |
| Msa1001620 | Msa1166670 | 0.814104 | 1.825876e-51 | -8.615850e-47 |
| Msa1001620 | Msa1180840 | 0.802512 | 5.416123e-49 | -8.615850e-47 |
| Msa1001620 | Msa1220580 | 0.849517 | 3.073986e-60 | -8.615850e-47 |
| Msa1001620 | Msa1296090 | 0.817442 | 3.290166e-52 | -8.615850e-47 |
| Msa1001620 | Msa1334560 | 0.855906 | 4.605589e-62 | -8.615850e-47 |
| Msa1001620 | Msa1347610 | 0.803240 | 3.830907e-49 | -8.615850e-47 |
| Msa1001620 | Msa1363910 | 0.800059 | 1.721498e-48 | -8.615850e-47 |
| Msa1001620 | Msa1368170 | 0.804834 | 1.786114e-49 | -8.615850e-47 |
| Msa1001620 | Msa1371800 | 0.824900 | 6.283186e-54 | -8.615850e-47 |
| Msa1001620 | Msa1376310 | 0.827830 | 1.259726e-54 | -8.615850e-47 |
| Msa1001620 | Msa1388890 | 0.813202 | 2.883949e-51 | -8.615850e-47 |
| Msa1001620 | Msa1395050 | 0.848891 | 4.589956e-60 | -8.615850e-47 |
| Msa1001620 | Msa1420830 | 0.810299 | 1.235058e-50 | -8.615850e-47 |
| Msa1001620 | Msa1449160 | 0.818781 | 1.638810e-52 | -8.615850e-47 |
| Msa1001620 | Msa1450560 | 0.802301 | 5.986606e-49 | -8.615850e-47 |
| Msa0243750 | Msa1001620 | 0.801017 | 1.097757e-48 | -8.615850e-47 |
| Msa0274940 | Msa1001620 | 0.801514 | 8.685409e-49 | -8.615850e-47 |
| Msa0282290 | Msa1001620 | 0.801359 | 9.346820e-49 | -8.615850e-47 |
| Msa0301250 | Msa1001620 | 0.841114 | 5.780344e-58 | -8.615850e-47 |
| Msa0313060 | Msa1001620 | 0.852104 | 5.746790e-61 | -8.615850e-47 |
| Msa0315660 | Msa1001620 | 0.827804 | 1.278158e-54 | -8.615850e-47 |
| Msa0356640 | Msa1001620 | 0.839503 | 1.524199e-57 | -8.615850e-47 |
| Msa0495620 | Msa1001620 | 0.842401 | 2.645033e-58 | -8.615850e-47 |
| Msa0500420 | Msa1001620 | 0.801498 | 8.752794e-49 | -8.615850e-47 |
| Msa0515110 | Msa1001620 | 0.814946 | 1.188902e-51 | -8.615850e-47 |
| Msa0521510 | Msa1001620 | 0.814338 | 1.621454e-51 | -8.615850e-47 |
| Msa0566460 | Msa1001620 | 0.819976 | 8.750814e-53 | -8.615850e-47 |
| Msa0573550 | Msa1001620 | 0.860728 | 1.686595e-63 | -8.615850e-47 |
| Msa0582070 | Msa1001620 | 0.817021 | 4.092649e-52 | -8.615850e-47 |
| Msa0846900 | Msa1001620 | 0.826040 | 3.373972e-54 | -8.615850e-47 |
| Msa0925330 | Msa1001620 | 0.916913 | 1.003727e-85 | -8.615850e-47 |
| Msa0926240 | Msa1001620 | 0.806461 | 8.135843e-50 | -8.615850e-47 |
| Msa0929700 | Msa1001620 | 0.843264 | 1.559122e-58 | -8.615850e-47 |
| Msa0930790 | Msa1001620 | 0.807120 | 5.902698e-50 | -8.615850e-47 |
| Msa0965800 | Msa1001620 | 0.823757 | 1.166537e-53 | -8.615850e-47 |
| Msa0966120 | Msa1001620 | 0.920679 | 9.426792e-88 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001620 | MtrunA17_Chr6g0488641 | 98.726 | 157 | 2 | 0 | 1 | 157 | 1 | 157 | 1.48e-115 | 323 |
| Msa1001620 | MtrunA17_Chr8g0389171 | 62.676 | 142 | 53 | 0 | 12 | 153 | 4 | 145 | 4.43e-65 | 196 |
| Msa1001620 | MtrunA17_Chr6g0488021 | 45.679 | 81 | 34 | 2 | 39 | 119 | 113 | 183 | 2.89e-17 | 75.5 |
| Msa1001620 | MtrunA17_Chr6g0488001 | 42.391 | 92 | 43 | 2 | 4 | 95 | 50 | 131 | 3.93e-15 | 69.3 |
| Msa1001620 | MtrunA17_Chr6g0488031 | 37.500 | 88 | 52 | 2 | 62 | 149 | 3 | 87 | 1.07e-14 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1001620 | AT2G06925.1 | 65.563 | 151 | 45 | 1 | 7 | 157 | 5 | 148 | 2.02e-71 | 212 |
| Msa1001620 | AT2G06925.2 | 65.306 | 147 | 44 | 1 | 7 | 153 | 5 | 144 | 2.26e-68 | 204 |
| Msa1001620 | AT2G19690.3 | 54.839 | 62 | 27 | 1 | 39 | 100 | 23 | 83 | 2.91e-18 | 75.5 |
| Msa1001620 | AT2G19690.1 | 46.250 | 80 | 40 | 2 | 39 | 118 | 23 | 99 | 4.98e-18 | 76.3 |
| Msa1001620 | AT2G19690.2 | 46.250 | 80 | 40 | 2 | 39 | 118 | 23 | 99 | 5.49e-18 | 75.9 |
| Msa1001620 | AT4G29460.1 | 46.914 | 81 | 40 | 2 | 41 | 121 | 23 | 100 | 7.78e-18 | 76.6 |
| Msa1001620 | AT4G29470.1 | 42.268 | 97 | 52 | 3 | 25 | 121 | 8 | 100 | 6.01e-17 | 74.3 |
| Msa1001620 | AT4G29470.2 | 42.268 | 97 | 52 | 3 | 25 | 121 | 8 | 100 | 6.01e-17 | 74.3 |
Find 30 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTTGGTTTCTGATTTAT+AGG | 0.255322 | 6_4:+85469830 | None:intergenic |
| AAGTGAGAGTAATTGAAATT+TGG | 0.260893 | 6_4:+85469815 | None:intergenic |
| TGTCATGGAAGCTGCTTTAC+TGG | 0.266457 | 6_4:-85468295 | Msa1001620:CDS |
| CCATGCAGTCTATGAATGTT+TGG | 0.339978 | 6_4:+85468397 | None:intergenic |
| AGTAGGCAAGATTACTGCTT+AGG | 0.360692 | 6_4:+85468251 | None:intergenic |
| GTGCCTCCATTGTTGAGATA+TGG | 0.393871 | 6_4:-85469421 | Msa1001620:CDS |
| TGCCTACTAATCAAGTCTTA+TGG | 0.394596 | 6_4:-85468236 | Msa1001620:three_prime_UTR |
| TGCGAGTCAAGTTTCTGTTC+AGG | 0.442850 | 6_4:-85469517 | Msa1001620:intron |
| CATGTGTTTCCTTTGAATGT+AGG | 0.457173 | 6_4:+85468351 | None:intergenic |
| TGCCATAAGACTTGATTAGT+AGG | 0.462270 | 6_4:+85468234 | None:intergenic |
| GTAGGCAAGATTACTGCTTA+GGG | 0.479026 | 6_4:+85468252 | None:intergenic |
| TTTGGCTGCACTGCTGACTT+AGG | 0.479097 | 6_4:+85468415 | None:intergenic |
| AAGAAAGCTTGGTTTGTGGC+AGG | 0.509038 | 6_4:+85469914 | None:intergenic |
| CATGTTTATGCACTTAACAT+AGG | 0.509197 | 6_4:-85469685 | Msa1001620:CDS |
| ATGGAAGCTGCTTTACTGGC+TGG | 0.510582 | 6_4:-85468291 | Msa1001620:CDS |
| AAAGTGTCTCAAAGAAAGCT+TGG | 0.522459 | 6_4:+85469903 | None:intergenic |
| CTCAAAGAAAGCTTGGTTTG+TGG | 0.527217 | 6_4:+85469910 | None:intergenic |
| ACAAAGGCTCCTACATTCAA+AGG | 0.530546 | 6_4:-85468360 | Msa1001620:CDS |
| CTTCAATAACATCATCTGCT+TGG | 0.548099 | 6_4:+85468328 | None:intergenic |
| TGAAGTTATCAAGATTGTCA+TGG | 0.550055 | 6_4:-85468310 | Msa1001620:CDS |
| AAAGCTTGGTTTGTGGCAGG+TGG | 0.579279 | 6_4:+85469917 | None:intergenic |
| CCAAACATTCATAGACTGCA+TGG | 0.586577 | 6_4:-85468397 | Msa1001620:CDS |
| AACATAGGTGCTGAAACCAC+TGG | 0.598513 | 6_4:-85469670 | Msa1001620:CDS |
| CTCACACATGAAAATAAACA+TGG | 0.610697 | 6_4:-85469767 | Msa1001620:exon |
| TACTTTCCATATCTCAACAA+TGG | 0.617587 | 6_4:+85469415 | None:intergenic |
| GTTAAGTGCATAAACATGAG+TGG | 0.652688 | 6_4:+85469690 | None:intergenic |
| AACTGAAACAGCTACTCCAG+TGG | 0.671963 | 6_4:+85469654 | None:intergenic |
| TTTCCATATCTCAACAATGG+AGG | 0.673712 | 6_4:+85469418 | None:intergenic |
| TTGAGATATGGAAAGTACTG+TGG | 0.689516 | 6_4:-85469409 | Msa1001620:CDS |
| CAAGCATCTAGACCATCACA+AGG | 0.698237 | 6_4:+85469355 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTAATATGTTTAGAAT+TGG | + | chr6_4:85468453-85468472 | None:intergenic | 10.0% |
| !! | AACAATTTAACATATATATT+AGG | - | chr6_4:85469024-85469043 | Msa1001620:intron | 10.0% |
| !!! | TGGTTAAAAATAATTTTATA+TGG | + | chr6_4:85469152-85469171 | None:intergenic | 10.0% |
| !!! | CTATTAATATATTCTTTTTA+CGG | - | chr6_4:85469935-85469954 | Msa1001620:five_prime_UTR | 10.0% |
| !!! | TTAATTAATATGTTTAGAAT+TGG | + | chr6_4:85468453-85468472 | None:intergenic | 10.0% |
| !! | AACAATTTAACATATATATT+AGG | - | chr6_4:85469024-85469043 | Msa1001620:intron | 10.0% |
| !!! | TGGTTAAAAATAATTTTATA+TGG | + | chr6_4:85469152-85469171 | None:intergenic | 10.0% |
| !!! | CTATTAATATATTCTTTTTA+CGG | - | chr6_4:85469935-85469954 | Msa1001620:five_prime_UTR | 10.0% |
| !! | ACACAAATAAAATAAAGATA+TGG | - | chr6_4:85469102-85469121 | Msa1001620:intron | 15.0% |
| !! | AAATAAAATAAAGATATGGT+AGG | - | chr6_4:85469106-85469125 | Msa1001620:intron | 15.0% |
| !! | TAAAAACAAGAAAGAAAAAT+AGG | + | chr6_4:85469859-85469878 | None:intergenic | 15.0% |
| !! | ACACAAATAAAATAAAGATA+TGG | - | chr6_4:85469102-85469121 | Msa1001620:intron | 15.0% |
| !! | AAATAAAATAAAGATATGGT+AGG | - | chr6_4:85469106-85469125 | Msa1001620:intron | 15.0% |
| !! | TAAAAACAAGAAAGAAAAAT+AGG | + | chr6_4:85469859-85469878 | None:intergenic | 15.0% |
| !!! | AAATTTGGTTTCTGATTTAT+AGG | + | chr6_4:85468229-85468248 | None:intergenic | 20.0% |
| !!! | ATCTAACATTGTTATTGATT+AGG | - | chr6_4:85468857-85468876 | Msa1001620:intron | 20.0% |
| !!! | TATGGATAGTCAAAAATTTT+AGG | - | chr6_4:85468920-85468939 | Msa1001620:intron | 20.0% |
| !! | AAATATGTTATCATGTTATC+AGG | + | chr6_4:85468949-85468968 | None:intergenic | 20.0% |
| !!! | TTTTTAACCAGTATACTAAT+TGG | - | chr6_4:85469162-85469181 | Msa1001620:intron | 20.0% |
| !!! | ATTGGTTAGTCTTTATTTAT+GGG | + | chr6_4:85469215-85469234 | None:intergenic | 20.0% |
| !! | AAATGAAGTAATTAGATGAA+GGG | + | chr6_4:85469240-85469259 | None:intergenic | 20.0% |
| !! | ACTAGTAAATAGTATTAGTT+TGG | + | chr6_4:85469344-85469363 | None:intergenic | 20.0% |
| !! | TTATCAAATGTAATGGTTAT+GGG | + | chr6_4:85469385-85469404 | None:intergenic | 20.0% |
| !! | ATTATCAAATGTAATGGTTA+TGG | + | chr6_4:85469386-85469405 | None:intergenic | 20.0% |
| !!! | TTTTTTGCTATACTTTATGT+TGG | - | chr6_4:85469420-85469439 | Msa1001620:CDS | 20.0% |
| !! | CATAAGATTAATAGTTACTA+AGG | + | chr6_4:85469450-85469469 | None:intergenic | 20.0% |
| !!! | AAATTTGGTTTCTGATTTAT+AGG | + | chr6_4:85468229-85468248 | None:intergenic | 20.0% |
| !!! | ATCTAACATTGTTATTGATT+AGG | - | chr6_4:85468857-85468876 | Msa1001620:intron | 20.0% |
| !!! | TATGGATAGTCAAAAATTTT+AGG | - | chr6_4:85468920-85468939 | Msa1001620:intron | 20.0% |
| !! | AAATATGTTATCATGTTATC+AGG | + | chr6_4:85468949-85468968 | None:intergenic | 20.0% |
| !!! | TTTTTAACCAGTATACTAAT+TGG | - | chr6_4:85469162-85469181 | Msa1001620:intron | 20.0% |
| !!! | ATTGGTTAGTCTTTATTTAT+GGG | + | chr6_4:85469215-85469234 | None:intergenic | 20.0% |
| !! | AAATGAAGTAATTAGATGAA+GGG | + | chr6_4:85469240-85469259 | None:intergenic | 20.0% |
| !! | ACTAGTAAATAGTATTAGTT+TGG | + | chr6_4:85469344-85469363 | None:intergenic | 20.0% |
| !! | TTATCAAATGTAATGGTTAT+GGG | + | chr6_4:85469385-85469404 | None:intergenic | 20.0% |
| !! | ATTATCAAATGTAATGGTTA+TGG | + | chr6_4:85469386-85469405 | None:intergenic | 20.0% |
| !!! | TTTTTTGCTATACTTTATGT+TGG | - | chr6_4:85469420-85469439 | Msa1001620:CDS | 20.0% |
| !! | CATAAGATTAATAGTTACTA+AGG | + | chr6_4:85469450-85469469 | None:intergenic | 20.0% |
| ! | AAGTGAGAGTAATTGAAATT+TGG | + | chr6_4:85468244-85468263 | None:intergenic | 25.0% |
| !!! | TTTTTGAAAATTGAGCTGAT+TGG | - | chr6_4:85468604-85468623 | Msa1001620:intron | 25.0% |
| ! | GAATCAGATGATACTAAAAA+TGG | + | chr6_4:85468831-85468850 | None:intergenic | 25.0% |
| !!! | ATAGCTTTTAGGATTGAATT+AGG | + | chr6_4:85468901-85468920 | None:intergenic | 25.0% |
| ! | ATTCAATCCTAAAAGCTATA+TGG | - | chr6_4:85468902-85468921 | Msa1001620:intron | 25.0% |
| ! | TAAAATAAAGATATGGTAGG+TGG | - | chr6_4:85469109-85469128 | Msa1001620:intron | 25.0% |
| !!! | CATTGGTTAGTCTTTATTTA+TGG | + | chr6_4:85469216-85469235 | None:intergenic | 25.0% |
| ! | GAAATGAAGTAATTAGATGA+AGG | + | chr6_4:85469241-85469260 | None:intergenic | 25.0% |
| ! | TCATCTAATTACTTCATTTC+TGG | - | chr6_4:85469241-85469260 | Msa1001620:intron | 25.0% |
| ! | TAGCAAAAAAAAATTAGTCC+TGG | + | chr6_4:85469410-85469429 | None:intergenic | 25.0% |
| ! | TATATGTGTCAATATCATGT+TGG | + | chr6_4:85469532-85469551 | None:intergenic | 25.0% |
| ! | AAGTGAGAGTAATTGAAATT+TGG | + | chr6_4:85468244-85468263 | None:intergenic | 25.0% |
| !!! | TTTTTGAAAATTGAGCTGAT+TGG | - | chr6_4:85468604-85468623 | Msa1001620:intron | 25.0% |
| ! | GAATCAGATGATACTAAAAA+TGG | + | chr6_4:85468831-85468850 | None:intergenic | 25.0% |
| !!! | ATAGCTTTTAGGATTGAATT+AGG | + | chr6_4:85468901-85468920 | None:intergenic | 25.0% |
| ! | ATTCAATCCTAAAAGCTATA+TGG | - | chr6_4:85468902-85468921 | Msa1001620:intron | 25.0% |
| ! | TAAAATAAAGATATGGTAGG+TGG | - | chr6_4:85469109-85469128 | Msa1001620:intron | 25.0% |
| !!! | CATTGGTTAGTCTTTATTTA+TGG | + | chr6_4:85469216-85469235 | None:intergenic | 25.0% |
| ! | GAAATGAAGTAATTAGATGA+AGG | + | chr6_4:85469241-85469260 | None:intergenic | 25.0% |
| ! | TCATCTAATTACTTCATTTC+TGG | - | chr6_4:85469241-85469260 | Msa1001620:intron | 25.0% |
| ! | TAGCAAAAAAAAATTAGTCC+TGG | + | chr6_4:85469410-85469429 | None:intergenic | 25.0% |
| ! | TATATGTGTCAATATCATGT+TGG | + | chr6_4:85469532-85469551 | None:intergenic | 25.0% |
| !! | TTTATTTTCATGTGTGAGTG+TGG | + | chr6_4:85468287-85468306 | None:intergenic | 30.0% |
| CTCACACATGAAAATAAACA+TGG | - | chr6_4:85468289-85468308 | Msa1001620:CDS | 30.0% | |
| CATGTTTATGCACTTAACAT+AGG | - | chr6_4:85468371-85468390 | Msa1001620:CDS | 30.0% | |
| CTCTTTGCTCTACAAAAAAA+AGG | + | chr6_4:85468507-85468526 | None:intergenic | 30.0% | |
| TACTTTCCATATCTCAACAA+TGG | + | chr6_4:85468644-85468663 | None:intergenic | 30.0% | |
| !! | TATTTTTGACTGTGACACAT+TGG | + | chr6_4:85468742-85468761 | None:intergenic | 30.0% |
| ! | TGACTATCCATATAGCTTTT+AGG | + | chr6_4:85468912-85468931 | None:intergenic | 30.0% |
| ATCAGTAAGTATTATTGCAG+TGG | - | chr6_4:85469054-85469073 | Msa1001620:intron | 30.0% | |
| CCTGGAATTATCAAATGTAA+TGG | + | chr6_4:85469392-85469411 | None:intergenic | 30.0% | |
| ! | CCATTACATTTGATAATTCC+AGG | - | chr6_4:85469389-85469408 | Msa1001620:CDS | 30.0% |
| ! | TTTGCTATACTTTATGTTGG+TGG | - | chr6_4:85469423-85469442 | Msa1001620:CDS | 30.0% |
| TGTCAATATCATGTTGGTAT+CGG | + | chr6_4:85469526-85469545 | None:intergenic | 30.0% | |
| TAGACTGCATGGAAAAATTT+AGG | - | chr6_4:85469670-85469689 | Msa1001620:CDS | 30.0% | |
| GGAAAAATTTAGGAACACAA+AGG | - | chr6_4:85469680-85469699 | Msa1001620:CDS | 30.0% | |
| TGAAGTTATCAAGATTGTCA+TGG | - | chr6_4:85469746-85469765 | Msa1001620:CDS | 30.0% | |
| !! | TTTATTTTCATGTGTGAGTG+TGG | + | chr6_4:85468287-85468306 | None:intergenic | 30.0% |
| CTCACACATGAAAATAAACA+TGG | - | chr6_4:85468289-85468308 | Msa1001620:CDS | 30.0% | |
| CATGTTTATGCACTTAACAT+AGG | - | chr6_4:85468371-85468390 | Msa1001620:CDS | 30.0% | |
| CTCTTTGCTCTACAAAAAAA+AGG | + | chr6_4:85468507-85468526 | None:intergenic | 30.0% | |
| TACTTTCCATATCTCAACAA+TGG | + | chr6_4:85468644-85468663 | None:intergenic | 30.0% | |
| !! | TATTTTTGACTGTGACACAT+TGG | + | chr6_4:85468742-85468761 | None:intergenic | 30.0% |
| ! | TGACTATCCATATAGCTTTT+AGG | + | chr6_4:85468912-85468931 | None:intergenic | 30.0% |
| ATCAGTAAGTATTATTGCAG+TGG | - | chr6_4:85469054-85469073 | Msa1001620:intron | 30.0% | |
| CCTGGAATTATCAAATGTAA+TGG | + | chr6_4:85469392-85469411 | None:intergenic | 30.0% | |
| ! | CCATTACATTTGATAATTCC+AGG | - | chr6_4:85469389-85469408 | Msa1001620:CDS | 30.0% |
| ! | TTTGCTATACTTTATGTTGG+TGG | - | chr6_4:85469423-85469442 | Msa1001620:CDS | 30.0% |
| TGTCAATATCATGTTGGTAT+CGG | + | chr6_4:85469526-85469545 | None:intergenic | 30.0% | |
| TAGACTGCATGGAAAAATTT+AGG | - | chr6_4:85469670-85469689 | Msa1001620:CDS | 30.0% | |
| GGAAAAATTTAGGAACACAA+AGG | - | chr6_4:85469680-85469699 | Msa1001620:CDS | 30.0% | |
| TGAAGTTATCAAGATTGTCA+TGG | - | chr6_4:85469746-85469765 | Msa1001620:CDS | 30.0% | |
| ! | AAAGTGTCTCAAAGAAAGCT+TGG | + | chr6_4:85468156-85468175 | None:intergenic | 35.0% |
| GTTAAGTGCATAAACATGAG+TGG | + | chr6_4:85468369-85468388 | None:intergenic | 35.0% | |
| TTTCCATATCTCAACAATGG+AGG | + | chr6_4:85468641-85468660 | None:intergenic | 35.0% | |
| !! | TTGAGATATGGAAAGTACTG+TGG | - | chr6_4:85468647-85468666 | Msa1001620:intron | 35.0% |
| ! | TACTGTGGACTTTTGTATAG+TGG | - | chr6_4:85468662-85468681 | Msa1001620:intron | 35.0% |
| TGTGTGTGTTTGATATCAAG+TGG | + | chr6_4:85469087-85469106 | None:intergenic | 35.0% | |
| TACAAGGCCAATTAGTATAC+TGG | + | chr6_4:85469172-85469191 | None:intergenic | 35.0% | |
| TAAACTTCATAGCAGGTACA+AGG | + | chr6_4:85469188-85469207 | None:intergenic | 35.0% | |
| GTAATTAGATGAAGGGTCAT+TGG | + | chr6_4:85469233-85469252 | None:intergenic | 35.0% | |
| AATCCTCTTAAGCATAGTCT+TGG | + | chr6_4:85469300-85469319 | None:intergenic | 35.0% | |
| TTTCAGACTGAATGTCTGTT+TGG | - | chr6_4:85469480-85469499 | Msa1001620:intron | 35.0% | |
| AGCTAGCTAATGATTAATGC+TGG | - | chr6_4:85469599-85469618 | Msa1001620:intron | 35.0% | |
| CATGTGTTTCCTTTGAATGT+AGG | + | chr6_4:85469708-85469727 | None:intergenic | 35.0% | |
| CTTCAATAACATCATCTGCT+TGG | + | chr6_4:85469731-85469750 | None:intergenic | 35.0% | |
| TGCCTACTAATCAAGTCTTA+TGG | - | chr6_4:85469820-85469839 | Msa1001620:five_prime_UTR | 35.0% | |
| TGCCATAAGACTTGATTAGT+AGG | + | chr6_4:85469825-85469844 | None:intergenic | 35.0% | |
| ! | AAAGTGTCTCAAAGAAAGCT+TGG | + | chr6_4:85468156-85468175 | None:intergenic | 35.0% |
| GTTAAGTGCATAAACATGAG+TGG | + | chr6_4:85468369-85468388 | None:intergenic | 35.0% | |
| TTTCCATATCTCAACAATGG+AGG | + | chr6_4:85468641-85468660 | None:intergenic | 35.0% | |
| !! | TTGAGATATGGAAAGTACTG+TGG | - | chr6_4:85468647-85468666 | Msa1001620:intron | 35.0% |
| ! | TACTGTGGACTTTTGTATAG+TGG | - | chr6_4:85468662-85468681 | Msa1001620:intron | 35.0% |
| TGTGTGTGTTTGATATCAAG+TGG | + | chr6_4:85469087-85469106 | None:intergenic | 35.0% | |
| TACAAGGCCAATTAGTATAC+TGG | + | chr6_4:85469172-85469191 | None:intergenic | 35.0% | |
| TAAACTTCATAGCAGGTACA+AGG | + | chr6_4:85469188-85469207 | None:intergenic | 35.0% | |
| GTAATTAGATGAAGGGTCAT+TGG | + | chr6_4:85469233-85469252 | None:intergenic | 35.0% | |
| AATCCTCTTAAGCATAGTCT+TGG | + | chr6_4:85469300-85469319 | None:intergenic | 35.0% | |
| TTTCAGACTGAATGTCTGTT+TGG | - | chr6_4:85469480-85469499 | Msa1001620:intron | 35.0% | |
| AGCTAGCTAATGATTAATGC+TGG | - | chr6_4:85469599-85469618 | Msa1001620:intron | 35.0% | |
| CATGTGTTTCCTTTGAATGT+AGG | + | chr6_4:85469708-85469727 | None:intergenic | 35.0% | |
| CTTCAATAACATCATCTGCT+TGG | + | chr6_4:85469731-85469750 | None:intergenic | 35.0% | |
| TGCCTACTAATCAAGTCTTA+TGG | - | chr6_4:85469820-85469839 | Msa1001620:five_prime_UTR | 35.0% | |
| TGCCATAAGACTTGATTAGT+AGG | + | chr6_4:85469825-85469844 | None:intergenic | 35.0% | |
| ! | CTCAAAGAAAGCTTGGTTTG+TGG | + | chr6_4:85468149-85468168 | None:intergenic | 40.0% |
| ! | CATCACAAGGTTTTTCACCA+GGG | + | chr6_4:85468691-85468710 | None:intergenic | 40.0% |
| GGGTACATAAACTTCATAGC+AGG | + | chr6_4:85469195-85469214 | None:intergenic | 40.0% | |
| ! | TAAGCATAGTCTTGGAGTGA+AGG | + | chr6_4:85469292-85469311 | None:intergenic | 40.0% |
| ACTCCAAGACTATGCTTAAG+AGG | - | chr6_4:85469294-85469313 | Msa1001620:intron | 40.0% | |
| GTTTGGTATCCTACACTTGT+TGG | - | chr6_4:85469497-85469516 | Msa1001620:intron | 40.0% | |
| CCATGCAGTCTATGAATGTT+TGG | + | chr6_4:85469662-85469681 | None:intergenic | 40.0% | |
| CCAAACATTCATAGACTGCA+TGG | - | chr6_4:85469659-85469678 | Msa1001620:CDS | 40.0% | |
| ACAAAGGCTCCTACATTCAA+AGG | - | chr6_4:85469696-85469715 | Msa1001620:CDS | 40.0% | |
| GTAGGCAAGATTACTGCTTA+GGG | + | chr6_4:85469807-85469826 | None:intergenic | 40.0% | |
| AGTAGGCAAGATTACTGCTT+AGG | + | chr6_4:85469808-85469827 | None:intergenic | 40.0% | |
| ! | CTCAAAGAAAGCTTGGTTTG+TGG | + | chr6_4:85468149-85468168 | None:intergenic | 40.0% |
| ! | CATCACAAGGTTTTTCACCA+GGG | + | chr6_4:85468691-85468710 | None:intergenic | 40.0% |
| GGGTACATAAACTTCATAGC+AGG | + | chr6_4:85469195-85469214 | None:intergenic | 40.0% | |
| ! | TAAGCATAGTCTTGGAGTGA+AGG | + | chr6_4:85469292-85469311 | None:intergenic | 40.0% |
| ACTCCAAGACTATGCTTAAG+AGG | - | chr6_4:85469294-85469313 | Msa1001620:intron | 40.0% | |
| GTTTGGTATCCTACACTTGT+TGG | - | chr6_4:85469497-85469516 | Msa1001620:intron | 40.0% | |
| CCATGCAGTCTATGAATGTT+TGG | + | chr6_4:85469662-85469681 | None:intergenic | 40.0% | |
| CCAAACATTCATAGACTGCA+TGG | - | chr6_4:85469659-85469678 | Msa1001620:CDS | 40.0% | |
| ACAAAGGCTCCTACATTCAA+AGG | - | chr6_4:85469696-85469715 | Msa1001620:CDS | 40.0% | |
| GTAGGCAAGATTACTGCTTA+GGG | + | chr6_4:85469807-85469826 | None:intergenic | 40.0% | |
| AGTAGGCAAGATTACTGCTT+AGG | + | chr6_4:85469808-85469827 | None:intergenic | 40.0% | |
| !! | AAGAAAGCTTGGTTTGTGGC+AGG | + | chr6_4:85468145-85468164 | None:intergenic | 45.0% |
| !! | AACATAGGTGCTGAAACCAC+TGG | - | chr6_4:85468386-85468405 | Msa1001620:CDS | 45.0% |
| AACTGAAACAGCTACTCCAG+TGG | + | chr6_4:85468405-85468424 | None:intergenic | 45.0% | |
| TGCGAGTCAAGTTTCTGTTC+AGG | - | chr6_4:85468539-85468558 | Msa1001620:intron | 45.0% | |
| GTGCCTCCATTGTTGAGATA+TGG | - | chr6_4:85468635-85468654 | Msa1001620:intron | 45.0% | |
| !!! | CTTTTGTATAGTGGATGCCC+TGG | - | chr6_4:85468671-85468690 | Msa1001620:intron | 45.0% |
| ! | CCATCACAAGGTTTTTCACC+AGG | + | chr6_4:85468692-85468711 | None:intergenic | 45.0% |
| CCTGGTGAAAAACCTTGTGA+TGG | - | chr6_4:85468689-85468708 | Msa1001620:intron | 45.0% | |
| CAAGCATCTAGACCATCACA+AGG | + | chr6_4:85468704-85468723 | None:intergenic | 45.0% | |
| AGTCTTGGAGTGAAGGAGAA+GGG | + | chr6_4:85469285-85469304 | None:intergenic | 45.0% | |
| ! | TAGTCTTGGAGTGAAGGAGA+AGG | + | chr6_4:85469286-85469305 | None:intergenic | 45.0% |
| TATCGGACACCAACAAGTGT+AGG | + | chr6_4:85469509-85469528 | None:intergenic | 45.0% | |
| CTTAGGTAGTCATCTGCAGA+AGG | + | chr6_4:85469627-85469646 | None:intergenic | 45.0% | |
| ! | TGTCATGGAAGCTGCTTTAC+TGG | - | chr6_4:85469761-85469780 | Msa1001620:CDS | 45.0% |
| !! | AAGAAAGCTTGGTTTGTGGC+AGG | + | chr6_4:85468145-85468164 | None:intergenic | 45.0% |
| !! | AACATAGGTGCTGAAACCAC+TGG | - | chr6_4:85468386-85468405 | Msa1001620:CDS | 45.0% |
| AACTGAAACAGCTACTCCAG+TGG | + | chr6_4:85468405-85468424 | None:intergenic | 45.0% | |
| TGCGAGTCAAGTTTCTGTTC+AGG | - | chr6_4:85468539-85468558 | Msa1001620:intron | 45.0% | |
| GTGCCTCCATTGTTGAGATA+TGG | - | chr6_4:85468635-85468654 | Msa1001620:intron | 45.0% | |
| !!! | CTTTTGTATAGTGGATGCCC+TGG | - | chr6_4:85468671-85468690 | Msa1001620:intron | 45.0% |
| ! | CCATCACAAGGTTTTTCACC+AGG | + | chr6_4:85468692-85468711 | None:intergenic | 45.0% |
| CCTGGTGAAAAACCTTGTGA+TGG | - | chr6_4:85468689-85468708 | Msa1001620:intron | 45.0% | |
| CAAGCATCTAGACCATCACA+AGG | + | chr6_4:85468704-85468723 | None:intergenic | 45.0% | |
| AGTCTTGGAGTGAAGGAGAA+GGG | + | chr6_4:85469285-85469304 | None:intergenic | 45.0% | |
| ! | TAGTCTTGGAGTGAAGGAGA+AGG | + | chr6_4:85469286-85469305 | None:intergenic | 45.0% |
| TATCGGACACCAACAAGTGT+AGG | + | chr6_4:85469509-85469528 | None:intergenic | 45.0% | |
| CTTAGGTAGTCATCTGCAGA+AGG | + | chr6_4:85469627-85469646 | None:intergenic | 45.0% | |
| ! | TGTCATGGAAGCTGCTTTAC+TGG | - | chr6_4:85469761-85469780 | Msa1001620:CDS | 45.0% |
| !! | AAAGCTTGGTTTGTGGCAGG+TGG | + | chr6_4:85468142-85468161 | None:intergenic | 50.0% |
| !! | TTTGGCTGCACTGCTGACTT+AGG | + | chr6_4:85469644-85469663 | None:intergenic | 50.0% |
| ! | ATGGAAGCTGCTTTACTGGC+TGG | - | chr6_4:85469765-85469784 | Msa1001620:exon | 50.0% |
| !! | AAAGCTTGGTTTGTGGCAGG+TGG | + | chr6_4:85468142-85468161 | None:intergenic | 50.0% |
| !! | TTTGGCTGCACTGCTGACTT+AGG | + | chr6_4:85469644-85469663 | None:intergenic | 50.0% |
| ! | ATGGAAGCTGCTTTACTGGC+TGG | - | chr6_4:85469765-85469784 | Msa1001620:exon | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 85468105 | 85469973 | 85468105 | ID=Msa1001620;Name=Msa1001620 |
| chr6_4 | mRNA | 85468105 | 85469973 | 85468105 | ID=Msa1001620-mRNA-1;Parent=Msa1001620;Name=Msa1001620-mRNA-1;_AED=0.09;_eAED=0.09;_QI=191|1|1|1|1|1|4|164|157 |
| chr6_4 | exon | 85468105 | 85468444 | 85468105 | ID=Msa1001620-mRNA-1:exon:16802;Parent=Msa1001620-mRNA-1 |
| chr6_4 | exon | 85469317 | 85469442 | 85469317 | ID=Msa1001620-mRNA-1:exon:16801;Parent=Msa1001620-mRNA-1 |
| chr6_4 | exon | 85469518 | 85469560 | 85469518 | ID=Msa1001620-mRNA-1:exon:16800;Parent=Msa1001620-mRNA-1 |
| chr6_4 | exon | 85469654 | 85469973 | 85469654 | ID=Msa1001620-mRNA-1:exon:16799;Parent=Msa1001620-mRNA-1 |
| chr6_4 | five_prime_UTR | 85469783 | 85469973 | 85469783 | ID=Msa1001620-mRNA-1:five_prime_utr;Parent=Msa1001620-mRNA-1 |
| chr6_4 | CDS | 85469654 | 85469782 | 85469654 | ID=Msa1001620-mRNA-1:cds;Parent=Msa1001620-mRNA-1 |
| chr6_4 | CDS | 85469518 | 85469560 | 85469518 | ID=Msa1001620-mRNA-1:cds;Parent=Msa1001620-mRNA-1 |
| chr6_4 | CDS | 85469317 | 85469442 | 85469317 | ID=Msa1001620-mRNA-1:cds;Parent=Msa1001620-mRNA-1 |
| chr6_4 | CDS | 85468269 | 85468444 | 85468269 | ID=Msa1001620-mRNA-1:cds;Parent=Msa1001620-mRNA-1 |
| chr6_4 | three_prime_UTR | 85468105 | 85468268 | 85468105 | ID=Msa1001620-mRNA-1:three_prime_utr;Parent=Msa1001620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
