AlfalfaGEDB | Msa1465310

M. sativa cultivar zhongmu-4 / Msa1465310

KEGG: K01191
GO: GO:0000323 GO:0003674 GO:0003824 GO:0004553 GO:0004559 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005764 GO:0005773 GO:0005774 GO:0005975 GO:0005996 GO:0006013 GO:0006464 GO:0006517 GO:0006807 GO:0008150 GO:0008152 GO:0009100 GO:0009505 GO:0009987 GO:0015923 GO:0016020 GO:0016787 GO:0016798 GO:0019318 GO:0019538 GO:0030312 GO:0031090 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044281 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071704 GO:0071944 GO:0098588 GO:0098805 GO:1901135 GO:1901564
PFAM: PF17677.4

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1465310	XP_003624502.1	95.614	114	4	1	1	114	910	1022	4.77e-63	217

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1465310	sp\|P94078\|MANA1_ARATH	70.000	100	28	1	1	100	907	1004	6.27e-37	135

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1465310	G7KX96	95.614	114	4	1	1	114	910	1022	2.28e-63	217

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003700	Msa1465310	0.819172	1.335453e-52	-8.615850e-47
Msa0020930	Msa1465310	0.800435	1.443477e-48	-8.615850e-47
Msa0094120	Msa1465310	0.800976	1.119414e-48	-8.615850e-47
Msa0110970	Msa1465310	0.816144	6.434229e-52	-8.615850e-47
Msa0146260	Msa1465310	0.816221	6.184422e-52	-8.615850e-47
Msa0200260	Msa1465310	0.802017	6.848566e-49	-8.615850e-47
Msa0225740	Msa1465310	0.805920	1.057425e-49	-8.615850e-47
Msa0243100	Msa1465310	0.805679	1.188236e-49	-8.615850e-47
Msa0340090	Msa1465310	0.800564	1.358634e-48	-8.615850e-47
Msa0376350	Msa1465310	0.811346	7.330201e-51	-8.615850e-47

Showing 1 to 10 of 30 entries

Previous1 2 3Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1465310	MtrunA17_Chr7g0252171	95.614	114	4	1	1	114	910	1022	4.39e-67	217
Msa1465310	MtrunA17_Chr3g0131651	68.687	99	30	1	1	99	917	1014	9.29e-41	143
Msa1465310	MtrunA17_Chr7g0252151	70.000	100	29	1	1	100	954	1052	2.12e-39	139
Msa1465310	MtrunA17_Chr8g0371581	58.586	99	39	1	1	99	922	1018	1.32e-31	117

Showing 1 to 4 of 4 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1465310	AT3G26720.1	70.000	100	28	1	1	100	907	1004	6.38e-38	135
Msa1465310	AT5G13980.1	69.697	99	28	1	1	97	910	1008	4.80e-37	132
Msa1465310	AT5G13980.2	69.697	99	28	1	1	97	910	1008	4.80e-37	132
Msa1465310	AT5G66150.3	63.636	99	35	1	1	99	644	741	8.69e-28	106
Msa1465310	AT5G66150.1	63.636	99	35	1	1	99	938	1035	9.81e-28	106
Msa1465310	AT5G66150.2	63.636	99	35	1	1	99	937	1034	1.09e-27	106
Msa1465310	AT3G26720.5	71.053	38	11	0	1	38	907	944	5.35e-11	58.5

Showing 1 to 7 of 7 entries

Previous1Next

Find 44 sgRNAs with CRISPR-Local

Find 205 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGAGAAGATACAAACA+TGG	0.708935	tig0045145:-1233	Msa1465300:intergenic
AAACATGGATTGGGTTGGTT+TGG	0.368850	tig0045145:-1218	Msa1465310:intergenic
AAACGTACATTCTTCTCTGT+TGG	0.497513	tig0045145:-963	Msa1465310:intergenic
AAAGAAGAGATTAGTTTGGA+AGG	0.497971	tig0045145:+771	Msa1465310:CDS
AACTTGTTCCAATGGAGATT+CGG	0.406586	tig0045145:+866	Msa1465310:CDS
AAGAATGTCCGAATCTCCAT+TGG	0.513779	tig0045145:-874	Msa1465310:intergenic
AATGGAGATTCGGACATTCT+TGG	0.400784	tig0045145:+876	Msa1465310:CDS
ACCACTCTTACCTTCTTGTT+AGG	0.407090	tig0045145:-623	Msa1465310:intergenic
ACCAGCTTTGTAGGATCAAC+TGG	0.421591	tig0045145:-838	Msa1465310:intergenic
ACCAGTTGATCCTACAAAGC+TGG	0.532090	tig0045145:+837	Msa1465310:CDS

Showing 1 to 10 of 44 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CTTGCATTCTTAACTATGAT+TGG	+	tig0045145:449-468	Msa1465310:intron	30.0%
ATTCTTAACTATGATTGGGA+TGG	+	tig0045145:454-473	Msa1465310:intron	30.0%
TCGTGTATTACTACATGTAA+AGG	+	tig0045145:544-563	Msa1465310:intron	30.0%
GTATTACTACATGTAAAGGT+TGG	+	tig0045145:548-567	Msa1465310:intron	30.0%
ACATGCAGCAAAAAATAGTT+TGG	-	tig0045145:662-681	Msa1465310:intergenic	30.0%
TAATCAAGAAAGAGCTGAAA+TGG	+	tig0045145:747-766	Msa1465310:CDS	30.0%
AGAAGATACAAACATGGATT+GGG	-	tig0045145:1230-1249	Msa1465310:intergenic	30.0%
CTTGCATTCTTAACTATGAT+TGG	+	tig0045145:449-468	Msa1465310:intron	30.0%
ATTCTTAACTATGATTGGGA+TGG	+	tig0045145:454-473	Msa1465310:intron	30.0%
TCGTGTATTACTACATGTAA+AGG	+	tig0045145:544-563	Msa1465310:intron	30.0%

Showing 1 to 10 of 205 entries

Previous1 2 3 4 5…21Next

Chromosome	Type	Strat	End	Strand	Name
tig0045145	gene	1	1377	1	ID=Msa1465310;Name=Msa1465310
tig0045145	mRNA	1	1377	1	ID=Msa1465310-mRNA-1;Parent=Msa1465310;Name=Msa1465310-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|1\|1\|1\|0.5\|0.66\|3\|423\|114
tig0045145	exon	1	36	1	ID=Msa1465310-mRNA-1:exon:24750;Parent=Msa1465310-mRNA-1
tig0045145	exon	566	634	566	ID=Msa1465310-mRNA-1:exon:24751;Parent=Msa1465310-mRNA-1
tig0045145	exon	715	1377	715	ID=Msa1465310-mRNA-1:exon:24752;Parent=Msa1465310-mRNA-1
tig0045145	CDS	1	36	1	ID=Msa1465310-mRNA-1:cds;Parent=Msa1465310-mRNA-1
tig0045145	CDS	566	634	566	ID=Msa1465310-mRNA-1:cds;Parent=Msa1465310-mRNA-1
tig0045145	CDS	715	954	715	ID=Msa1465310-mRNA-1:cds;Parent=Msa1465310-mRNA-1
tig0045145	three_prime_UTR	955	1377	955	ID=Msa1465310-mRNA-1:three_prime_utr;Parent=Msa1465310-mRNA-1

Gene Sequence	>Msa1465310 GGAAAAGTACTATTAAGACTGGCTCACCTTTATGAGGTTGGAGAGGACAAAGATTATTCAGTAACCGCAAATGTAGAATTGAAAAAGCTTTTGCCTAACAAGAAGATAAGTAAAGTGACAGAGATGAGTTTGTCTTCTAATCAAGAAAGAGCTGAAATGGAAAAGAAGAGATTAGTTTGGAAGGTAGAAGGAGGCTCCAGTGAAGAGTCTAAGGTGGTGAGGGGAGGACCAGTTGATCCTACAAAGCTGGTTGTTGAACTTGTTCCAATGGAGATTCGGACATTCTTGGTTGACTTTAATCCCCTTCAAACAGTTCCTGCAGCAGAAAAACATGTAGCAATCTAG
Protein sequence	>Msa1465310 GKVLLRLAHLYEVGEDKDYSVTANVELKKLLPNKKISKVTEMSLSSNQERAEMEKKRLVWKVEGGSSEESKVVRGGPVDPTKLVVELVPMEIRTFLVDFNPLQTVPAAEKHVAI*