AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0509710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0509710 MtrunA17_Chr3g0114801 98.451 452 6 1 1 451 1 452 0.0 919
Msa0509710 MtrunA17_Chr4g0047481 97.118 451 13 0 1 451 1 451 0.0 907
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0509710 AT4G17020.1 74.889 450 113 0 1 450 1 450 0.0 726
Msa0509710 AT4G17020.3 74.889 450 113 0 1 450 1 450 0.0 726
Msa0509710 AT4G17020.2 74.889 450 113 0 1 450 1 450 0.0 724

Find 108 sgRNAs with CRISPR-Local

Find 339 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGAAGAGCTTATGTTTA+AGG 0.129241 3_4:-58207601 None:intergenic
AAGCCACTCTCAGTTAATTT+TGG 0.189946 3_4:-58207788 None:intergenic
GAGAATGGAGTGGTTTATTA+TGG 0.194734 3_4:+58210869 Msa0509710:CDS
TGTAGCTTTCTTACTACTTT+TGG 0.235437 3_4:-58210963 None:intergenic
ATAATCAATTGAAGAGAAAT+TGG 0.243117 3_4:+58205358 Msa0509710:five_prime_UTR
ACCTGTGCCGGCTAAGTTAT+TGG 0.271234 3_4:+58206199 Msa0509710:CDS
ACACTTTCTGATGCATCTTA+TGG 0.293041 3_4:+58210983 Msa0509710:three_prime_UTR
CAAAGTTGCCATTGATAGAT+TGG 0.301692 3_4:+58206256 Msa0509710:CDS
ATTTCAGAGGAACATAATTA+AGG 0.312303 3_4:+58208288 Msa0509710:CDS
CCACTACAATCTTGTTAATA+AGG 0.326913 3_4:+58205403 Msa0509710:five_prime_UTR
GATCATTGCCAAGAATTTCA+TGG 0.333040 3_4:+58205642 Msa0509710:CDS
CACCATGTCCATGAAATTCT+TGG 0.335342 3_4:-58205650 None:intergenic
CAACTTCCAAATCTTATTGT+TGG 0.350456 3_4:+58210038 Msa0509710:CDS
AATTATGTTCCTCTGAAATT+CGG 0.351671 3_4:-58208284 None:intergenic
AGATTCAAAGAAGATGCTTT+TGG 0.356097 3_4:+58210894 Msa0509710:CDS
ATAGCTCCAACAATAAGATT+TGG 0.356315 3_4:-58210044 None:intergenic
CACAACTTTGGTACATCATC+AGG 0.365045 3_4:+58207920 Msa0509710:CDS
GTAGAGTTTATCAAGTTTGA+TGG 0.368766 3_4:-58205686 None:intergenic
TGTGAGGCTCCCAACCTTAG+AGG 0.379390 3_4:+58207320 Msa0509710:CDS
TCATCGTTATCATTGCATAT+TGG 0.381310 3_4:-58211010 None:intergenic
CACATGGATGGCTTGATTCA+TGG 0.384114 3_4:-58205271 None:intergenic
GGCTAAGTTATTGGAGGAAT+GGG 0.394224 3_4:+58206208 Msa0509710:CDS
TTACAGTTATTGCATATTGA+TGG 0.396001 3_4:+58206176 Msa0509710:CDS
TGGGCTGGTCAAACTTCAAC+AGG 0.402831 3_4:+58208324 Msa0509710:CDS
TTGTGCTTTGAAAGACCATC+TGG 0.405073 3_4:-58206236 None:intergenic
ATAAGTCTCAAGATCCTCTA+AGG 0.406525 3_4:-58207334 None:intergenic
AGAATGGAGTGGTTTATTAT+GGG 0.410978 3_4:+58210870 Msa0509710:CDS
ACCCATGTACTAAAAGATTC+TGG 0.421490 3_4:-58206924 None:intergenic
TGGCTTGATTCATGGATGTA+GGG 0.423922 3_4:-58205263 None:intergenic
AAATCAAAATGCCTGAGGTT+AGG 0.443637 3_4:+58205620 Msa0509710:exon
GCCTGAAAATGTCACAGATC+AGG 0.448319 3_4:+58210582 Msa0509710:CDS
CCTGTGACTGCGCCAGAGAA+TGG 0.448807 3_4:+58210854 Msa0509710:CDS
TTAAGGACCTTGCAGACCTT+GGG 0.454174 3_4:+58208305 Msa0509710:CDS
CTTGATAAACTCTACGAGAA+TGG 0.454631 3_4:+58205694 Msa0509710:CDS
ATTAAGGACCTTGCAGACCT+TGG 0.455377 3_4:+58208304 Msa0509710:CDS
GACTTATGCTCTGGAACAAT+GGG 0.456255 3_4:+58207350 Msa0509710:CDS
CGGCTAAGTTATTGGAGGAA+TGG 0.470454 3_4:+58206207 Msa0509710:CDS
TCCAATAACTTAGCCGGCAC+AGG 0.471035 3_4:-58206200 None:intergenic
TGCAGATAGTCAGTTTCCTT+CGG 0.477880 3_4:+58210518 Msa0509710:intron
AGCCTCACAGTAATATTAGA+AGG 0.477881 3_4:-58207306 None:intergenic
TCAAAGTTGCTTACCCTGGA+TGG 0.478380 3_4:-58210745 None:intergenic
AAGGTCTTGTCAACATGACT+TGG 0.480094 3_4:-58207582 None:intergenic
TATAGGGCAGGAAAGAAAGT+TGG 0.482264 3_4:+58208473 Msa0509710:intron
GTCTCAAGATCCTCTAAGGT+TGG 0.483810 3_4:-58207330 None:intergenic
TAATAAACCACTCCATTCTC+TGG 0.489013 3_4:-58210866 None:intergenic
ATCTCTAATAAGTTGATAGC+AGG 0.492285 3_4:+58205316 Msa0509710:five_prime_UTR
AGACTTATGCTCTGGAACAA+TGG 0.494366 3_4:+58207349 Msa0509710:CDS
TGGATACAAATGCACAACTT+TGG 0.500692 3_4:+58207908 Msa0509710:CDS
TCTCAAGATCCTCTAAGGTT+GGG 0.504105 3_4:-58207329 None:intergenic
TGAATCATCATCAAGAAAAG+AGG 0.506736 3_4:+58208540 Msa0509710:CDS
AGTTTATCAAGTTTGATGGC+AGG 0.511969 3_4:-58205682 None:intergenic
CAATTGAACCAATCTATCAA+TGG 0.514654 3_4:-58206264 None:intergenic
GTAAACAGAACCTCTGACTC+AGG 0.517111 3_4:-58207647 None:intergenic
CATTCCTCCAATAACTTAGC+CGG 0.523734 3_4:-58206206 None:intergenic
TGCCAAGAATTTCATGGACA+TGG 0.531687 3_4:+58205648 Msa0509710:CDS
ATATGCAATGATAACGATGA+TGG 0.534134 3_4:+58211013 Msa0509710:three_prime_UTR
GGATCTTGAGACTTATGCTC+TGG 0.535259 3_4:+58207341 Msa0509710:CDS
GTGGTGACAGATTAGGTTGT+GGG 0.535695 3_4:+58210669 Msa0509710:intron
GGACCTTGCAGACCTTGGGC+TGG 0.536902 3_4:+58208309 Msa0509710:CDS
CAGGAGAGAGGTGTTGATGC+TGG 0.539060 3_4:+58208041 Msa0509710:intron
GTGTGGCAGGATGTATTTGA+AGG 0.539271 3_4:+58210829 Msa0509710:intron
TCATCTGCGAAGCTATTCTC+AGG 0.539972 3_4:+58205719 Msa0509710:CDS
TCTGACTCAGGAGACGCCGC+TGG 0.540398 3_4:-58207635 None:intergenic
AGGTCTTGTCAACATGACTT+GGG 0.547217 3_4:-58207581 None:intergenic
CAATGGCATTACAGCAGACC+AGG 0.547595 3_4:+58210097 Msa0509710:CDS
GGCTTGATTCATGGATGTAG+GGG 0.548666 3_4:-58205262 None:intergenic
CCATTCTCTGGCGCAGTCAC+AGG 0.549704 3_4:-58210854 None:intergenic
ATGGCTTGATTCATGGATGT+AGG 0.551810 3_4:-58205264 None:intergenic
ATTATGACGAGTTCCCATCC+AGG 0.551997 3_4:+58210731 Msa0509710:CDS
CCTTATTAACAAGATTGTAG+TGG 0.558275 3_4:-58205403 None:intergenic
TCTAATAAGTTGATAGCAGG+TGG 0.566929 3_4:+58205319 Msa0509710:five_prime_UTR
AATTACACTGTGAGATATTG+CGG 0.567848 3_4:+58209698 Msa0509710:CDS
CAAAGTTGCTTACCCTGGAT+GGG 0.570298 3_4:-58210744 None:intergenic
ATTAACAAGATTGTAGTGGA+TGG 0.571304 3_4:-58205399 None:intergenic
ATTCAGTCATGCTCACTGAA+AGG 0.573028 3_4:-58208522 None:intergenic
AACACATACTTCTTTGCAAG+AGG 0.573329 3_4:-58206155 None:intergenic
TTAGAAGGCATTGATTCCCT+CGG 0.574898 3_4:-58207291 None:intergenic
TGATTACTACTACACATGGA+TGG 0.580774 3_4:-58205283 None:intergenic
TCATCCTCGTGTTGCACAGA+GGG 0.581937 3_4:+58210549 Msa0509710:CDS
GCTCCAAAATTAACTGAGAG+TGG 0.582979 3_4:+58207785 Msa0509710:CDS
TGACTTGATATCATTCATGC+TGG 0.584712 3_4:+58208064 Msa0509710:CDS
TTGGCAATGATCCTAACCTC+AGG 0.587350 3_4:-58205631 None:intergenic
GGTGGTGACAGATTAGGTTG+TGG 0.588257 3_4:+58210668 Msa0509710:intron
GCATATTGATGGACCTGTGC+CGG 0.588398 3_4:+58206187 Msa0509710:CDS
AGCGGCGTCTCCTGAGTCAG+AGG 0.589108 3_4:+58207637 Msa0509710:CDS
GAGGAATGGGTGCTTCCAGA+TGG 0.595776 3_4:+58206221 Msa0509710:CDS
GAGGATGAGCATTCTGCCGA+AGG 0.597208 3_4:-58210534 None:intergenic
GTTGAAGTTTGACCAGCCCA+AGG 0.597505 3_4:-58208321 None:intergenic
CAAGAATTTCATGGACATGG+TGG 0.599325 3_4:+58205651 Msa0509710:CDS
TGCAATGATAACGATGATGG+AGG 0.602618 3_4:+58211016 Msa0509710:three_prime_UTR
TTATGACGAGTTCCCATCCA+GGG 0.606538 3_4:+58210732 Msa0509710:CDS
TGTGCCGGCTAAGTTATTGG+AGG 0.608812 3_4:+58206202 Msa0509710:CDS
ACATACTTCTTTGCAAGAGG+CGG 0.608895 3_4:-58206152 None:intergenic
TGACCAGCCCAAGGTCTGCA+AGG 0.612502 3_4:-58208312 None:intergenic
ACACATTGACCGAATTTCAG+AGG 0.620159 3_4:+58208275 Msa0509710:CDS
TTATGCTCTGGAACAATGGG+AGG 0.625310 3_4:+58207353 Msa0509710:CDS
AAATTGATTACTACTACACA+TGG 0.626945 3_4:-58205287 None:intergenic
GGAATATATCACTAATTCTG+AGG 0.632294 3_4:+58207942 Msa0509710:CDS
GCAATGATAACGATGATGGA+GGG 0.649397 3_4:+58211017 Msa0509710:three_prime_UTR
TGGCAGTGGAACTTTGCCGA+GGG 0.654665 3_4:+58207275 Msa0509710:intron
ATGGCAGTGGAACTTTGCCG+AGG 0.657791 3_4:+58207274 Msa0509710:intron
ACAACTTTGGTACATCATCA+GGG 0.674313 3_4:+58207921 Msa0509710:CDS
CTCATCCTCGTGTTGCACAG+AGG 0.680297 3_4:+58210548 Msa0509710:CDS
AAACGAAATCAAAATGCCTG+AGG 0.682481 3_4:+58205615 Msa0509710:exon
GGTACCCTCTGTGCAACACG+AGG 0.694512 3_4:-58210553 None:intergenic
TGCCTTCTAATATTACTGTG+AGG 0.698083 3_4:+58207304 Msa0509710:CDS
CGATGATGGAGGGAGCAATG+TGG 0.721346 3_4:+58211027 Msa0509710:three_prime_UTR
GACTGCGCCAGAGAATGGAG+TGG 0.741961 3_4:+58210859 Msa0509710:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTACAACTTTAT+AGG + chr3_4:58208456-58208475 Msa0509710:intron 10.0%
!!! TTTTTTTTTACAACTTTATA+GGG + chr3_4:58208457-58208476 Msa0509710:intron 10.0%
!!! AATATTTTAATCTTTTTTGT+CGG + chr3_4:58208901-58208920 Msa0509710:intron 10.0%
!!! TAATTTTACTTTTTAAATTG+TGG + chr3_4:58210143-58210162 Msa0509710:intron 10.0%
!!! ATTAAAAGATTATAATTTTG+TGG + chr3_4:58211154-58211173 Msa0509710:three_prime_UTR 10.0%
!! CATATAAATCATAAAATGTT+AGG + chr3_4:58206123-58206142 Msa0509710:intron 15.0%
!! GAATAATATACGTAATAAAA+AGG - chr3_4:58206736-58206755 None:intergenic 15.0%
!! TGAAAAAAAAATACTAAACT+GGG - chr3_4:58206845-58206864 None:intergenic 15.0%
!! ATTAAGACAAATTATTAAAG+TGG - chr3_4:58207462-58207481 None:intergenic 15.0%
!! TTAAGTTTAATAGAAAGTTT+AGG + chr3_4:58208592-58208611 Msa0509710:intron 15.0%
!! TAAGTTTAATAGAAAGTTTA+GGG + chr3_4:58208593-58208612 Msa0509710:intron 15.0%
!! AATGCTAATGTAAAAAATAT+AGG - chr3_4:58208930-58208949 None:intergenic 15.0%
!! AAATTTAATTAAAAGGAAAG+AGG - chr3_4:58209101-58209120 None:intergenic 15.0%
!!! AATTTTGTTCATATGTATAT+AGG + chr3_4:58209175-58209194 Msa0509710:intron 15.0%
!!! TCATTCTATTTAATTTTTTC+AGG + chr3_4:58209624-58209643 Msa0509710:intron 15.0%
!!! CATTCTATTTAATTTTTTCA+GGG + chr3_4:58209625-58209644 Msa0509710:intron 15.0%
!!! ACATACAATAATATTTTTGA+GGG - chr3_4:58210002-58210021 None:intergenic 15.0%
!!! TACATACAATAATATTTTTG+AGG - chr3_4:58210003-58210022 None:intergenic 15.0%
!! TTAAGTTAAAAACATCATTA+AGG + chr3_4:58210385-58210404 Msa0509710:intron 15.0%
!! ATTTCTGATATTTAGTATTA+TGG + chr3_4:58210647-58210666 Msa0509710:intron 15.0%
!! ATAATCAATTGAAGAGAAAT+TGG + chr3_4:58205358-58205377 Msa0509710:five_prime_UTR 20.0%
!! TAATAGCATGGTTATATAAT+TGG - chr3_4:58205513-58205532 None:intergenic 20.0%
!!! TTGTTTTTCTAAACAAATGA+AGG - chr3_4:58205596-58205615 None:intergenic 20.0%
!! TTTGAGAGAAATCATAAAAT+GGG + chr3_4:58206047-58206066 Msa0509710:intron 20.0%
!! ATTTATATGCATTAAAACCA+CGG - chr3_4:58206112-58206131 None:intergenic 20.0%
!!! ATTTTGTTTCAAATGACAAT+TGG + chr3_4:58206412-58206431 Msa0509710:intron 20.0%
!!! TGTATTCTAAAAGAAACAAA+GGG - chr3_4:58206598-58206617 None:intergenic 20.0%
!!! ATGTATTCTAAAAGAAACAA+AGG - chr3_4:58206599-58206618 None:intergenic 20.0%
!! GTGAAAAAAAAATACTAAAC+TGG - chr3_4:58206846-58206865 None:intergenic 20.0%
!! CATAAAATTGTTAATATGAG+TGG + chr3_4:58207026-58207045 Msa0509710:intron 20.0%
!!! TTCATATGAATTTTGAATTC+AGG - chr3_4:58207159-58207178 None:intergenic 20.0%
!! ATATTATATGCCTAATCATT+GGG - chr3_4:58208253-58208272 None:intergenic 20.0%
!! TATATTATATGCCTAATCAT+TGG - chr3_4:58208254-58208273 None:intergenic 20.0%
!! AAAACAAATGAATTGTGAAA+CGG - chr3_4:58208574-58208593 None:intergenic 20.0%
!! AAGCAAAGAAAAAAAAGAAT+GGG - chr3_4:58208800-58208819 None:intergenic 20.0%
!! TATAAGTACAAGATAAATTG+AGG - chr3_4:58209889-58209908 None:intergenic 20.0%
!! TTATAGCTGAATTAATAGTT+TGG - chr3_4:58209914-58209933 None:intergenic 20.0%
!! TTCACCAAAATATTATTGTT+TGG + chr3_4:58209951-58209970 Msa0509710:intron 20.0%
!!! AACACCAAACAATAATATTT+TGG - chr3_4:58209958-58209977 None:intergenic 20.0%
!! AAATATTATTGTATGTATGC+AGG + chr3_4:58210006-58210025 Msa0509710:intron 20.0%
!! AATATTATTGTATGTATGCA+GGG + chr3_4:58210007-58210026 Msa0509710:intron 20.0%
!! TATAATTTCTAATACTTACC+TGG - chr3_4:58210118-58210137 None:intergenic 20.0%
!!! ATTTTGTTCCTTTTAGAAAA+AGG + chr3_4:58211092-58211111 Msa0509710:three_prime_UTR 20.0%
!!! CAATAAAACCTTTTTCTAAA+AGG - chr3_4:58211103-58211122 None:intergenic 20.0%
! AAATTGATTACTACTACACA+TGG - chr3_4:58205290-58205309 None:intergenic 25.0%
!!! TAAGCTTCAATTTTAGTAAC+AGG + chr3_4:58205440-58205459 Msa0509710:intron 25.0%
! TAAACTCAAATAAGTACTTG+TGG + chr3_4:58206020-58206039 Msa0509710:intron 25.0%
! AAACTCAAATAAGTACTTGT+GGG + chr3_4:58206021-58206040 Msa0509710:intron 25.0%
! GTTTGAGAGAAATCATAAAA+TGG + chr3_4:58206046-58206065 Msa0509710:intron 25.0%
! TTACAGTTATTGCATATTGA+TGG + chr3_4:58206176-58206195 Msa0509710:CDS 25.0%
!!! AACAAGGTTTTATCACAAAA+AGG - chr3_4:58206502-58206521 None:intergenic 25.0%
! AAAGAGATTTAGCAAAAATC+AGG - chr3_4:58206568-58206587 None:intergenic 25.0%
!! TATTCTAAAAGAAACAAAGG+GGG - chr3_4:58206596-58206615 None:intergenic 25.0%
!! GTATTCTAAAAGAAACAAAG+GGG - chr3_4:58206597-58206616 None:intergenic 25.0%
!! GAATTTGCTTTAAGTTAATG+AGG + chr3_4:58206675-58206694 Msa0509710:intron 25.0%
!! TTGTCTTCTTTTTCTATTCA+TGG + chr3_4:58206962-58206981 Msa0509710:intron 25.0%
! TTAACTCATAATACGTGATA+TGG - chr3_4:58207067-58207086 None:intergenic 25.0%
!!! ATTTTGGTCCTATAATTTCA+AGG - chr3_4:58207119-58207138 None:intergenic 25.0%
!! ATGACTATTATACAGCATTT+TGG - chr3_4:58207135-58207154 None:intergenic 25.0%
!! ACAACTTGAATGTTTGATTT+AGG + chr3_4:58207226-58207245 Msa0509710:intron 25.0%
! AAAAGTGGAATCAAAAGAAA+AGG - chr3_4:58207386-58207405 None:intergenic 25.0%
! TGTACAGATTAAACAAAAAG+TGG - chr3_4:58207401-58207420 None:intergenic 25.0%
! CATTAAATTGCAGTTACAAA+AGG - chr3_4:58208207-58208226 None:intergenic 25.0%
! TATTATATGCCTAATCATTG+GGG - chr3_4:58208252-58208271 None:intergenic 25.0%
!!! AATTATGTTCCTCTGAAATT+CGG - chr3_4:58208287-58208306 None:intergenic 25.0%
! ATTTCAGAGGAACATAATTA+AGG + chr3_4:58208288-58208307 Msa0509710:CDS 25.0%
!!! AAAACAAATTTTTGAGACAC+CGG - chr3_4:58208688-58208707 None:intergenic 25.0%
! GAAGCAAAGAAAAAAAAGAA+TGG - chr3_4:58208801-58208820 None:intergenic 25.0%
! AAAAGGAAAGAGGAAATATA+AGG - chr3_4:58209091-58209110 None:intergenic 25.0%
! ATTATGTCTTCAAAACGAAA+AGG + chr3_4:58209121-58209140 Msa0509710:intron 25.0%
! TACAGAAAACTAATGTTTGT+TGG + chr3_4:58209399-58209418 Msa0509710:intron 25.0%
!! TTGTATAATGCTTTTGACAA+TGG + chr3_4:58210080-58210099 Msa0509710:CDS 25.0%
!! TTCAAATTTGACTTCTGTAA+AGG + chr3_4:58210225-58210244 Msa0509710:intron 25.0%
! TCTGATATTTAGTATTATGG+TGG + chr3_4:58210650-58210669 Msa0509710:intron 25.0%
! GAAACATGAAAAAATGATAG+TGG - chr3_4:58211068-58211087 None:intergenic 25.0%
!! ATCTCTAATAAGTTGATAGC+AGG + chr3_4:58205316-58205335 Msa0509710:five_prime_UTR 30.0%
! ATTAACAAGATTGTAGTGGA+TGG - chr3_4:58205402-58205421 None:intergenic 30.0%
CCTTATTAACAAGATTGTAG+TGG - chr3_4:58205406-58205425 None:intergenic 30.0%
CCACTACAATCTTGTTAATA+AGG + chr3_4:58205403-58205422 Msa0509710:five_prime_UTR 30.0%
GGAAACTCATATTCTTTCTT+AGG + chr3_4:58205461-58205480 Msa0509710:intron 30.0%
AGCATAATAGCATAATAGCA+TGG - chr3_4:58205525-58205544 None:intergenic 30.0%
GTAGAGTTTATCAAGTTTGA+TGG - chr3_4:58205689-58205708 None:intergenic 30.0%
TTATCGAAACATGACCTTAA+TGG - chr3_4:58205780-58205799 None:intergenic 30.0%
CTACTTAAACAAGTACTTGT+GGG - chr3_4:58205999-58206018 None:intergenic 30.0%
TCTACTTAAACAAGTACTTG+TGG - chr3_4:58206000-58206019 None:intergenic 30.0%
CAATTGAACCAATCTATCAA+TGG - chr3_4:58206267-58206286 None:intergenic 30.0%
CAGTATTTGATGTCACAATT+TGG + chr3_4:58206700-58206719 Msa0509710:intron 30.0%
ACTAAACTGGGATAAAACAA+GGG - chr3_4:58206833-58206852 None:intergenic 30.0%
TACTAAACTGGGATAAAACA+AGG - chr3_4:58206834-58206853 None:intergenic 30.0%
!!! TTTTTTTTTCACCTTCTTGC+AGG + chr3_4:58206854-58206873 Msa0509710:intron 30.0%
! TCCAGAATCTTTTAGTACAT+GGG + chr3_4:58206923-58206942 Msa0509710:CDS 30.0%
ATGTACCTTAATAGCAACAA+GGG - chr3_4:58207009-58207028 None:intergenic 30.0%
TATGTACCTTAATAGCAACA+AGG - chr3_4:58207010-58207029 None:intergenic 30.0%
TCATAATACGTGATATGGAA+GGG - chr3_4:58207062-58207081 None:intergenic 30.0%
TAACAAACCTATATAGACGA+TGG + chr3_4:58207084-58207103 Msa0509710:intron 30.0%
TGGTTACTCCTTGAAATTAT+AGG + chr3_4:58207108-58207127 Msa0509710:intron 30.0%
! ACTTGAATGTTTGATTTAGG+TGG + chr3_4:58207229-58207248 Msa0509710:intron 30.0%
AACAAAGTCATTGGAGATTT+AGG - chr3_4:58207524-58207543 None:intergenic 30.0%
CAAAGAAGAGCTTATGTTTA+AGG - chr3_4:58207604-58207623 None:intergenic 30.0%
! CTTTGATGAAAATTTTCCAG+CGG + chr3_4:58207619-58207638 Msa0509710:CDS 30.0%
TGCATTACATTAAGTTCATG+TGG - chr3_4:58207847-58207866 None:intergenic 30.0%
GGAATATATCACTAATTCTG+AGG + chr3_4:58207942-58207961 Msa0509710:CDS 30.0%
ATAGCAGAAACATATAGAGA+AGG - chr3_4:58207984-58208003 None:intergenic 30.0%
!! AGCTTAGTTTTCATGTCATT+GGG + chr3_4:58208087-58208106 Msa0509710:CDS 30.0%
! TTTTTACAACTTTATAGGGC+AGG + chr3_4:58208461-58208480 Msa0509710:intron 30.0%
!!! AGGTTTGTTGCTAATTTTGT+TGG - chr3_4:58208505-58208524 None:intergenic 30.0%
TGAATCATCATCAAGAAAAG+AGG + chr3_4:58208540-58208559 Msa0509710:CDS 30.0%
! ACATTTTTAATGATGTGCCA+AGG - chr3_4:58208830-58208849 None:intergenic 30.0%
ACATCATTAAAAATGTGTGG+AGG + chr3_4:58208834-58208853 Msa0509710:intron 30.0%
! ATACGGTTTAGATGATCTTT+TGG + chr3_4:58209215-58209234 Msa0509710:intron 30.0%
! TACGGTTTAGATGATCTTTT+GGG + chr3_4:58209216-58209235 Msa0509710:intron 30.0%
ATATGTATGGAAGTTTCTGT+TGG + chr3_4:58209334-58209353 Msa0509710:intron 30.0%
! GTTTTCTGTAAGTTGTAGTA+TGG - chr3_4:58209389-58209408 None:intergenic 30.0%
ATAACATGTCAATCGTTCAT+TGG + chr3_4:58209496-58209515 Msa0509710:intron 30.0%
AATTACACTGTGAGATATTG+CGG + chr3_4:58209698-58209717 Msa0509710:CDS 30.0%
!! AGATATTGCGGTTATTTTCA+AGG + chr3_4:58209710-58209729 Msa0509710:CDS 30.0%
ACAGCATTGCAGAAAATATT+TGG - chr3_4:58209743-58209762 None:intergenic 30.0%
!!! AAACTGGAAGTTGTTTTTCA+TGG + chr3_4:58209845-58209864 Msa0509710:intron 30.0%
!!! GAAGTTGTTTTTCATGGAAT+AGG + chr3_4:58209851-58209870 Msa0509710:intron 30.0%
CAACTTCCAAATCTTATTGT+TGG + chr3_4:58210038-58210057 Msa0509710:CDS 30.0%
ATAGCTCCAACAATAAGATT+TGG - chr3_4:58210047-58210066 None:intergenic 30.0%
AATAGCTTACTATACTCCTT+CGG - chr3_4:58210280-58210299 None:intergenic 30.0%
! TCAATTTGAGACTTGATATG+TGG + chr3_4:58210299-58210318 Msa0509710:intron 30.0%
TTCAAATGAAGGATTGAAGT+CGG - chr3_4:58210328-58210347 None:intergenic 30.0%
AGTGAAGGTTATTCAAATGA+AGG - chr3_4:58210339-58210358 None:intergenic 30.0%
AATCAAAAAAGCCATAACAG+GGG - chr3_4:58210796-58210815 None:intergenic 30.0%
GAATCAAAAAAGCCATAACA+GGG - chr3_4:58210797-58210816 None:intergenic 30.0%
AGAATGGAGTGGTTTATTAT+GGG + chr3_4:58210870-58210889 Msa0509710:CDS 30.0%
! AGATTCAAAGAAGATGCTTT+TGG + chr3_4:58210894-58210913 Msa0509710:CDS 30.0%
! TGTAGCTTTCTTACTACTTT+TGG - chr3_4:58210966-58210985 None:intergenic 30.0%
TCATCGTTATCATTGCATAT+TGG - chr3_4:58211013-58211032 None:intergenic 30.0%
! ATATGCAATGATAACGATGA+TGG + chr3_4:58211013-58211032 Msa0509710:three_prime_UTR 30.0%
TGATTACTACTACACATGGA+TGG - chr3_4:58205286-58205305 None:intergenic 35.0%
!! TCTAATAAGTTGATAGCAGG+TGG + chr3_4:58205319-58205338 Msa0509710:five_prime_UTR 35.0%
!! GCAAGAGAGTTTTAGTAACA+GGG + chr3_4:58205485-58205504 Msa0509710:intron 35.0%
AAACGAAATCAAAATGCCTG+AGG + chr3_4:58205615-58205634 Msa0509710:exon 35.0%
AAATCAAAATGCCTGAGGTT+AGG + chr3_4:58205620-58205639 Msa0509710:exon 35.0%
GATCATTGCCAAGAATTTCA+TGG + chr3_4:58205642-58205661 Msa0509710:CDS 35.0%
! AGTTTATCAAGTTTGATGGC+AGG - chr3_4:58205685-58205704 None:intergenic 35.0%
CTTGATAAACTCTACGAGAA+TGG + chr3_4:58205694-58205713 Msa0509710:CDS 35.0%
!! AATGGTAGGCATTGAGAAAT+AGG - chr3_4:58205762-58205781 None:intergenic 35.0%
TTTCTCAATGCCTACCATTA+AGG + chr3_4:58205763-58205782 Msa0509710:intron 35.0%
CAACTTATGGGCATATCATA+AGG + chr3_4:58205948-58205967 Msa0509710:intron 35.0%
AACACATACTTCTTTGCAAG+AGG - chr3_4:58206158-58206177 None:intergenic 35.0%
CAAAGTTGCCATTGATAGAT+TGG + chr3_4:58206256-58206275 Msa0509710:CDS 35.0%
! TTTTTGTTGAAGCTCTTGAC+AGG + chr3_4:58206291-58206310 Msa0509710:CDS 35.0%
! GACAATTTATGCCTCTGAAA+TGG + chr3_4:58206376-58206395 Msa0509710:intron 35.0%
ATCAGTTTGAACCATTTCAG+AGG - chr3_4:58206390-58206409 None:intergenic 35.0%
CCTTAGTTTAGGCTAACATT+TGG - chr3_4:58206438-58206457 None:intergenic 35.0%
! CCAAATGTTAGCCTAAACTA+AGG + chr3_4:58206435-58206454 Msa0509710:intron 35.0%
TTAGCCTAAACTAAGGAGTT+TGG + chr3_4:58206442-58206461 Msa0509710:intron 35.0%
TACACCTTGTAATGTGTTGA+AGG + chr3_4:58206475-58206494 Msa0509710:intron 35.0%
CACATGCAACAGATAAAACA+AGG - chr3_4:58206518-58206537 None:intergenic 35.0%
AACAAAGACACACAAAGATG+TGG - chr3_4:58206760-58206779 None:intergenic 35.0%
! CTCCAGAATCTTTTAGTACA+TGG + chr3_4:58206922-58206941 Msa0509710:CDS 35.0%
ACCCATGTACTAAAAGATTC+TGG - chr3_4:58206927-58206946 None:intergenic 35.0%
! TTGTTCCCTTGTTGCTATTA+AGG + chr3_4:58207001-58207020 Msa0509710:intron 35.0%
CTCATAATACGTGATATGGA+AGG - chr3_4:58207063-58207082 None:intergenic 35.0%
AAACCTATATAGACGATGGT+TGG + chr3_4:58207088-58207107 Msa0509710:intron 35.0%
TAACCAACCATCGTCTATAT+AGG - chr3_4:58207094-58207113 None:intergenic 35.0%
TGCCTTCTAATATTACTGTG+AGG + chr3_4:58207304-58207323 Msa0509710:CDS 35.0%
AGCCTCACAGTAATATTAGA+AGG - chr3_4:58207309-58207328 None:intergenic 35.0%
ATAAGTCTCAAGATCCTCTA+AGG - chr3_4:58207337-58207356 None:intergenic 35.0%
!!! TCTCCAATGACTTTGTTTTG+CGG + chr3_4:58207527-58207546 Msa0509710:intron 35.0%
TTACCGCAAAACAAAGTCAT+TGG - chr3_4:58207533-58207552 None:intergenic 35.0%
TAAGTTGCAACAAGAAACAC+TGG - chr3_4:58207557-58207576 None:intergenic 35.0%
TTTGCACTCTGTCATATATG+TGG + chr3_4:58207702-58207721 Msa0509710:intron 35.0%
! AAGCCACTCTCAGTTAATTT+TGG - chr3_4:58207791-58207810 None:intergenic 35.0%
ATTTGATGCGTACCAAAAAC+TGG - chr3_4:58207814-58207833 None:intergenic 35.0%
TTGCTATGAATTACAGCTGA+TGG + chr3_4:58207888-58207907 Msa0509710:intron 35.0%
TGGATACAAATGCACAACTT+TGG + chr3_4:58207908-58207927 Msa0509710:CDS 35.0%
ACAACTTTGGTACATCATCA+GGG + chr3_4:58207921-58207940 Msa0509710:CDS 35.0%
TGACTTGATATCATTCATGC+TGG + chr3_4:58208064-58208083 Msa0509710:CDS 35.0%
!! GAGCTTAGTTTTCATGTCAT+TGG + chr3_4:58208086-58208105 Msa0509710:CDS 35.0%
!! GCTTAGTTTTCATGTCATTG+GGG + chr3_4:58208088-58208107 Msa0509710:CDS 35.0%
! TGATTTTTGCCCCAATGATT+AGG + chr3_4:58208240-58208259 Msa0509710:intron 35.0%
AGATGCAGAATGATCTAACT+TGG + chr3_4:58208392-58208411 Msa0509710:intron 35.0%
TATGAGTATCATACAGGTGT+CGG - chr3_4:58208747-58208766 None:intergenic 35.0%
GTGTTGTATGAGTATCATAC+AGG - chr3_4:58208753-58208772 None:intergenic 35.0%
AAAAAGAATGGGACACTTGT+CGG - chr3_4:58208789-58208808 None:intergenic 35.0%
GGCACATCATTAAAAATGTG+TGG + chr3_4:58208831-58208850 Msa0509710:intron 35.0%
GATGTATAAGACAGTGAACA+GGG - chr3_4:58209069-58209088 None:intergenic 35.0%
! ACGGTTTAGATGATCTTTTG+GGG + chr3_4:58209217-58209236 Msa0509710:intron 35.0%
! CTGTTTTGCTTGCATATGTA+TGG + chr3_4:58209321-58209340 Msa0509710:intron 35.0%
AGTTTCTGTTGGACATTATC+AGG + chr3_4:58209345-58209364 Msa0509710:intron 35.0%
TCTGTAAGTTGTAGTATGGA+CGG - chr3_4:58209385-58209404 None:intergenic 35.0%
TGAACGATTGACATGTTATG+AGG - chr3_4:58209495-58209514 None:intergenic 35.0%
!!! TTTTCAGGGATTTGTTGTTG+TGG + chr3_4:58209639-58209658 Msa0509710:intron 35.0%
GCATTGCAGAAAATATTTGG+TGG - chr3_4:58209740-58209759 None:intergenic 35.0%
GAACATGACAAAAGACTAGA+GGG - chr3_4:58209787-58209806 None:intergenic 35.0%
CTTCCTATGGAAATTGAAAC+TGG + chr3_4:58209829-58209848 Msa0509710:intron 35.0%
CTTCCAGTTTCAATTTCCAT+AGG - chr3_4:58209835-58209854 None:intergenic 35.0%
ATAGCTTACTATACTCCTTC+GGG - chr3_4:58210279-58210298 None:intergenic 35.0%
TTCACGTAGAATTTCAGTGA+AGG - chr3_4:58210354-58210373 None:intergenic 35.0%
! TATTATGGTGGTGACAGATT+AGG + chr3_4:58210662-58210681 Msa0509710:intron 35.0%
GGAATCAAAAAAGCCATAAC+AGG - chr3_4:58210798-58210817 None:intergenic 35.0%
! GATTCCTTATGTCATTTGTG+TGG + chr3_4:58210812-58210831 Msa0509710:intron 35.0%
TAATAAACCACTCCATTCTC+TGG - chr3_4:58210869-58210888 None:intergenic 35.0%
GAGAATGGAGTGGTTTATTA+TGG + chr3_4:58210869-58210888 Msa0509710:CDS 35.0%
! TTCAAAGAAGATGCTTTTGG+TGG + chr3_4:58210897-58210916 Msa0509710:CDS 35.0%
!! AGCTTTCTTACTACTTTTGG+CGG - chr3_4:58210963-58210982 None:intergenic 35.0%
ACACTTTCTGATGCATCTTA+TGG + chr3_4:58210983-58211002 Msa0509710:three_prime_UTR 35.0%
ATGGCTTGATTCATGGATGT+AGG - chr3_4:58205267-58205286 None:intergenic 40.0%
!! CGCAAGAGAGTTTTAGTAAC+AGG + chr3_4:58205484-58205503 Msa0509710:intron 40.0%
TGCCAAGAATTTCATGGACA+TGG + chr3_4:58205648-58205667 Msa0509710:CDS 40.0%
CACCATGTCCATGAAATTCT+TGG - chr3_4:58205653-58205672 None:intergenic 40.0%
CAAGAATTTCATGGACATGG+TGG + chr3_4:58205651-58205670 Msa0509710:CDS 40.0%
CGAAACATGACCTTAATGGT+AGG - chr3_4:58205776-58205795 None:intergenic 40.0%
AATAAGCTGCGAGCAACTTA+TGG + chr3_4:58205935-58205954 Msa0509710:intron 40.0%
ATAAGCTGCGAGCAACTTAT+GGG + chr3_4:58205936-58205955 Msa0509710:intron 40.0%
! ACAAGTACTTGTGGGCTATT+TGG - chr3_4:58205991-58206010 None:intergenic 40.0%
ACATACTTCTTTGCAAGAGG+CGG - chr3_4:58206155-58206174 None:intergenic 40.0%
CATTCCTCCAATAACTTAGC+CGG - chr3_4:58206209-58206228 None:intergenic 40.0%
GGCTAAGTTATTGGAGGAAT+GGG + chr3_4:58206208-58206227 Msa0509710:CDS 40.0%
!! TTGTGCTTTGAAAGACCATC+TGG - chr3_4:58206239-58206258 None:intergenic 40.0%
GTGTCCAAACTCCTTAGTTT+AGG - chr3_4:58206449-58206468 None:intergenic 40.0%
AGGTCCTTCAACACATTACA+AGG - chr3_4:58206482-58206501 None:intergenic 40.0%
ACAAGGGTCGAAAGTGAAAA+TGG - chr3_4:58206817-58206836 None:intergenic 40.0%
! TTTTCGTTCTTCCTGCAAGA+AGG - chr3_4:58206868-58206887 None:intergenic 40.0%
CACGTTCTTGTGGTTGAATA+TGG + chr3_4:58207255-58207274 Msa0509710:intron 40.0%
!! TTAGAAGGCATTGATTCCCT+CGG - chr3_4:58207294-58207313 None:intergenic 40.0%
!! TCTCAAGATCCTCTAAGGTT+GGG - chr3_4:58207332-58207351 None:intergenic 40.0%
!! AGACTTATGCTCTGGAACAA+TGG + chr3_4:58207349-58207368 Msa0509710:CDS 40.0%
!! GACTTATGCTCTGGAACAAT+GGG + chr3_4:58207350-58207369 Msa0509710:CDS 40.0%
! AGGTCTTGTCAACATGACTT+GGG - chr3_4:58207584-58207603 None:intergenic 40.0%
! AAGGTCTTGTCAACATGACT+TGG - chr3_4:58207585-58207604 None:intergenic 40.0%
GCTCCAAAATTAACTGAGAG+TGG + chr3_4:58207785-58207804 Msa0509710:CDS 40.0%
CACAACTTTGGTACATCATC+AGG + chr3_4:58207920-58207939 Msa0509710:CDS 40.0%
! TGCTCTTCATCGTCTACTTT+TGG + chr3_4:58208016-58208035 Msa0509710:intron 40.0%
! TAGTTTTCATGTCATTGGGG+AGG + chr3_4:58208091-58208110 Msa0509710:CDS 40.0%
ACACATTGACCGAATTTCAG+AGG + chr3_4:58208275-58208294 Msa0509710:CDS 40.0%
TATAGGGCAGGAAAGAAAGT+TGG + chr3_4:58208473-58208492 Msa0509710:intron 40.0%
ATTCAGTCATGCTCACTGAA+AGG - chr3_4:58208525-58208544 None:intergenic 40.0%
TATGAAGCATACACGCCTAA+AGG + chr3_4:58208628-58208647 Msa0509710:intron 40.0%
GATACTCATACAACACGTGT+TGG + chr3_4:58208757-58208776 Msa0509710:intron 40.0%
TTAGCATGTCTAAGGAGCTA+TGG - chr3_4:58208988-58209007 None:intergenic 40.0%
ATAGCTCCTTAGACATGCTA+AGG + chr3_4:58208987-58209006 Msa0509710:intron 40.0%
TAGCTCCTTAGACATGCTAA+GGG + chr3_4:58208988-58209007 Msa0509710:intron 40.0%
GGATGTATAAGACAGTGAAC+AGG - chr3_4:58209070-58209089 None:intergenic 40.0%
! CGGTTTAGATGATCTTTTGG+GGG + chr3_4:58209218-58209237 Msa0509710:intron 40.0%
!! TTAGATGATCTTTTGGGGGA+AGG + chr3_4:58209222-58209241 Msa0509710:intron 40.0%
!! TAGATGATCTTTTGGGGGAA+GGG + chr3_4:58209223-58209242 Msa0509710:intron 40.0%
! CATCAGTCTGAAGTAGTAAC+AGG - chr3_4:58209471-58209490 None:intergenic 40.0%
CATGTCAATCGTTCATTGGT+TGG + chr3_4:58209500-58209519 Msa0509710:intron 40.0%
GGAACATGACAAAAGACTAG+AGG - chr3_4:58209788-58209807 None:intergenic 40.0%
AGGAAGTTCCAAAACCCAAA+GGG - chr3_4:58209815-58209834 None:intergenic 40.0%
TAGGAAGTTCCAAAACCCAA+AGG - chr3_4:58209816-58209835 None:intergenic 40.0%
!!! TTGGGTTTTGGAACTTCCTA+TGG + chr3_4:58209816-58209835 Msa0509710:intron 40.0%
ATTGTGGTACTCACTCTAGA+TGG + chr3_4:58210159-58210178 Msa0509710:intron 40.0%
TGCAGATAGTCAGTTTCCTT+CGG + chr3_4:58210518-58210537 Msa0509710:intron 40.0%
! ACCTGATCTGTGACATTTTC+AGG - chr3_4:58210586-58210605 None:intergenic 40.0%
AGAATCAAAGTTGCTTACCC+TGG - chr3_4:58210752-58210771 None:intergenic 40.0%
! TGCAATGATAACGATGATGG+AGG + chr3_4:58211016-58211035 Msa0509710:three_prime_UTR 40.0%
!! GCAATGATAACGATGATGGA+GGG + chr3_4:58211017-58211036 Msa0509710:three_prime_UTR 40.0%
CACATGGATGGCTTGATTCA+TGG - chr3_4:58205274-58205293 None:intergenic 45.0%
TTGGCAATGATCCTAACCTC+AGG - chr3_4:58205634-58205653 None:intergenic 45.0%
TCATCTGCGAAGCTATTCTC+AGG + chr3_4:58205719-58205738 Msa0509710:CDS 45.0%
GGGCTATTTGGAAGAGCTTA+TGG - chr3_4:58205979-58205998 None:intergenic 45.0%
!!! TGAGTTTTGAATGTGCTCCG+TGG + chr3_4:58206092-58206111 Msa0509710:intron 45.0%
CGGCTAAGTTATTGGAGGAA+TGG + chr3_4:58206207-58206226 Msa0509710:CDS 45.0%
TAGGTGGTAACACGTTCTTG+TGG + chr3_4:58207245-58207264 Msa0509710:intron 45.0%
CTTGTGGTTGAATATGGCAG+TGG + chr3_4:58207261-58207280 Msa0509710:intron 45.0%
!! GTCTCAAGATCCTCTAAGGT+TGG - chr3_4:58207333-58207352 None:intergenic 45.0%
GGATCTTGAGACTTATGCTC+TGG + chr3_4:58207341-58207360 Msa0509710:CDS 45.0%
!! TTATGCTCTGGAACAATGGG+AGG + chr3_4:58207353-58207372 Msa0509710:CDS 45.0%
GTAAACAGAACCTCTGACTC+AGG - chr3_4:58207650-58207669 None:intergenic 45.0%
! TGAGAGTGGCTTCCAGTTTT+TGG + chr3_4:58207799-58207818 Msa0509710:CDS 45.0%
!! TCATCGTCTACTTTTGGTGC+AGG + chr3_4:58208022-58208041 Msa0509710:intron 45.0%
TGTGCAACAGATTCTCAGCA+AGG - chr3_4:58208132-58208151 None:intergenic 45.0%
ATTAAGGACCTTGCAGACCT+TGG + chr3_4:58208304-58208323 Msa0509710:CDS 45.0%
TTAAGGACCTTGCAGACCTT+GGG + chr3_4:58208305-58208324 Msa0509710:CDS 45.0%
CTGGTCAAACTTCAACAGGT+TGG + chr3_4:58208328-58208347 Msa0509710:intron 45.0%
GCGTGTATGCTTCATAGCTA+AGG - chr3_4:58208624-58208643 None:intergenic 45.0%
GCATACACGCCTAAAGGATT+AGG + chr3_4:58208634-58208653 Msa0509710:intron 45.0%
CTAAAGGATTAGGCGTGTCA+CGG + chr3_4:58208644-58208663 Msa0509710:intron 45.0%
TTCTTTGCTTCGACACTCGT+TGG + chr3_4:58208713-58208732 Msa0509710:intron 45.0%
TTCTTTGCTTCGACACACCT+TGG + chr3_4:58208810-58208829 Msa0509710:intron 45.0%
GAGGCAATGTTGATCAACGA+GGG + chr3_4:58208853-58208872 Msa0509710:intron 45.0%
AGGCAATGTTGATCAACGAG+GGG + chr3_4:58208854-58208873 Msa0509710:intron 45.0%
!! AGATGATCTTTTGGGGGAAG+GGG + chr3_4:58209224-58209243 Msa0509710:intron 45.0%
TGTTGGACATTATCAGGCTC+TGG + chr3_4:58209351-58209370 Msa0509710:intron 45.0%
!! CGTTCATTGGTTGGCTTTAG+TGG + chr3_4:58209509-58209528 Msa0509710:intron 45.0%
TTCCAAAACCCAAAGGGAAG+GGG - chr3_4:58209809-58209828 None:intergenic 45.0%
GTTCCAAAACCCAAAGGGAA+GGG - chr3_4:58209810-58209829 None:intergenic 45.0%
AGTTCCAAAACCCAAAGGGA+AGG - chr3_4:58209811-58209830 None:intergenic 45.0%
GCCTGAAAATGTCACAGATC+AGG + chr3_4:58210582-58210601 Msa0509710:CDS 45.0%
! GTGGTGACAGATTAGGTTGT+GGG + chr3_4:58210669-58210688 Msa0509710:intron 45.0%
ATTATGACGAGTTCCCATCC+AGG + chr3_4:58210731-58210750 Msa0509710:CDS 45.0%
TTATGACGAGTTCCCATCCA+GGG + chr3_4:58210732-58210751 Msa0509710:CDS 45.0%
CAAAGTTGCTTACCCTGGAT+GGG - chr3_4:58210747-58210766 None:intergenic 45.0%
TCAAAGTTGCTTACCCTGGA+TGG - chr3_4:58210748-58210767 None:intergenic 45.0%
GTCTTACGTATCCCCTGTTA+TGG + chr3_4:58210782-58210801 Msa0509710:intron 45.0%
CCTGCCACACAAATGACATA+AGG - chr3_4:58210819-58210838 None:intergenic 45.0%
! CCTTATGTCATTTGTGTGGC+AGG + chr3_4:58210816-58210835 Msa0509710:intron 45.0%
GTGTGGCAGGATGTATTTGA+AGG + chr3_4:58210829-58210848 Msa0509710:intron 45.0%
!! ACATAATAAATTTAATTAAA+AGG - chr3_4:58209108-58209127 None:intergenic 5.0%
!! AGTATATATTTAATTATATA+CGG + chr3_4:58209198-58209217 Msa0509710:intron 5.0%
! GCATATTGATGGACCTGTGC+CGG + chr3_4:58206187-58206206 Msa0509710:CDS 50.0%
!! ACCTGTGCCGGCTAAGTTAT+TGG + chr3_4:58206199-58206218 Msa0509710:CDS 50.0%
TCCAATAACTTAGCCGGCAC+AGG - chr3_4:58206203-58206222 None:intergenic 50.0%
!! TGTGCCGGCTAAGTTATTGG+AGG + chr3_4:58206202-58206221 Msa0509710:CDS 50.0%
!! CTACTTTTGGTGCAGGAGAG+AGG + chr3_4:58208029-58208048 Msa0509710:intron 50.0%
GTTGAAGTTTGACCAGCCCA+AGG - chr3_4:58208324-58208343 None:intergenic 50.0%
!! TGGGCTGGTCAAACTTCAAC+AGG + chr3_4:58208324-58208343 Msa0509710:CDS 50.0%
CGTGACACGCCTAATCCTTT+AGG - chr3_4:58208646-58208665 None:intergenic 50.0%
TGCTTCGACACTCGTTGGAT+CGG + chr3_4:58208718-58208737 Msa0509710:intron 50.0%
GGAGGCAATGTTGATCAACG+AGG + chr3_4:58208852-58208871 Msa0509710:intron 50.0%
GGCAATGTTGATCAACGAGG+GGG + chr3_4:58208855-58208874 Msa0509710:intron 50.0%
CTCCTTAGACATGCTAAGGG+TGG + chr3_4:58208991-58209010 Msa0509710:intron 50.0%
CTCCACCCTTAGCATGTCTA+AGG - chr3_4:58208996-58209015 None:intergenic 50.0%
CTTAGACATGCTAAGGGTGG+AGG + chr3_4:58208994-58209013 Msa0509710:intron 50.0%
TGTCATGTTCCCCTTCCCTT+TGG + chr3_4:58209797-58209816 Msa0509710:intron 50.0%
GTCATGTTCCCCTTCCCTTT+GGG + chr3_4:58209798-58209817 Msa0509710:intron 50.0%
!! TTCCCCTTCCCTTTGGGTTT+TGG + chr3_4:58209804-58209823 Msa0509710:intron 50.0%
CAATGGCATTACAGCAGACC+AGG + chr3_4:58210097-58210116 Msa0509710:CDS 50.0%
TCATCCTCGTGTTGCACAGA+GGG + chr3_4:58210549-58210568 Msa0509710:CDS 50.0%
!! GTGACATTTTCAGGCACTGC+TGG - chr3_4:58210577-58210596 None:intergenic 50.0%
! GGTGGTGACAGATTAGGTTG+TGG + chr3_4:58210668-58210687 Msa0509710:intron 50.0%
!! GCTTTTGGTGGTCAAGTCTG+AGG + chr3_4:58210909-58210928 Msa0509710:CDS 50.0%
GAGGAATGGGTGCTTCCAGA+TGG + chr3_4:58206221-58206240 Msa0509710:CDS 55.0%
ATGGCAGTGGAACTTTGCCG+AGG + chr3_4:58207274-58207293 Msa0509710:intron 55.0%
TGGCAGTGGAACTTTGCCGA+GGG + chr3_4:58207275-58207294 Msa0509710:intron 55.0%
TGTGAGGCTCCCAACCTTAG+AGG + chr3_4:58207320-58207339 Msa0509710:CDS 55.0%
!! CAGGAGAGAGGTGTTGATGC+TGG + chr3_4:58208041-58208060 Msa0509710:intron 55.0%
CGACGTGTCAATGTCGTGTC+AGG + chr3_4:58208952-58208971 Msa0509710:intron 55.0%
TGAACAGGGCACAGAGAGAG+AGG - chr3_4:58209055-58209074 None:intergenic 55.0%
GAGGATGAGCATTCTGCCGA+AGG - chr3_4:58210537-58210556 None:intergenic 55.0%
CTCATCCTCGTGTTGCACAG+AGG + chr3_4:58210548-58210567 Msa0509710:CDS 55.0%
!! CGATGATGGAGGGAGCAATG+TGG + chr3_4:58211027-58211046 Msa0509710:three_prime_UTR 55.0%
TGACCAGCCCAAGGTCTGCA+AGG - chr3_4:58208315-58208334 None:intergenic 60.0%
GTGTCCGACACTCGTCTGAC+CGG + chr3_4:58208666-58208685 Msa0509710:intron 60.0%
GACACCGGTCAGACGAGTGT+CGG - chr3_4:58208673-58208692 None:intergenic 60.0%
GGTACCCTCTGTGCAACACG+AGG - chr3_4:58210556-58210575 None:intergenic 60.0%
CCATTCTCTGGCGCAGTCAC+AGG - chr3_4:58210857-58210876 None:intergenic 60.0%
CCTGTGACTGCGCCAGAGAA+TGG + chr3_4:58210854-58210873 Msa0509710:CDS 60.0%
GACTGCGCCAGAGAATGGAG+TGG + chr3_4:58210859-58210878 Msa0509710:CDS 60.0%
TCTGACTCAGGAGACGCCGC+TGG - chr3_4:58207638-58207657 None:intergenic 65.0%
AGCGGCGTCTCCTGAGTCAG+AGG + chr3_4:58207637-58207656 Msa0509710:CDS 65.0%
GGACCTTGCAGACCTTGGGC+TGG + chr3_4:58208309-58208328 Msa0509710:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 58205264 58211199 58205264 ID=Msa0509710;Name=Msa0509710
chr3_4 mRNA 58205264 58211199 58205264 ID=Msa0509710-mRNA-1;Parent=Msa0509710;Name=Msa0509710-mRNA-1;_AED=0.14;_eAED=0.14;_QI=181|1|1|1|0.93|0.87|16|227|451
chr3_4 exon 58205264 58205424 58205264 ID=Msa0509710-mRNA-1:exon:13484;Parent=Msa0509710-mRNA-1
chr3_4 exon 58205608 58205740 58205608 ID=Msa0509710-mRNA-1:exon:13485;Parent=Msa0509710-mRNA-1
chr3_4 exon 58206145 58206312 58206145 ID=Msa0509710-mRNA-1:exon:13486;Parent=Msa0509710-mRNA-1
chr3_4 exon 58206876 58206944 58206876 ID=Msa0509710-mRNA-1:exon:13487;Parent=Msa0509710-mRNA-1
chr3_4 exon 58207281 58207374 58207281 ID=Msa0509710-mRNA-1:exon:13488;Parent=Msa0509710-mRNA-1
chr3_4 exon 58207558 58207658 58207558 ID=Msa0509710-mRNA-1:exon:13489;Parent=Msa0509710-mRNA-1
chr3_4 exon 58207775 58207820 58207775 ID=Msa0509710-mRNA-1:exon:13490;Parent=Msa0509710-mRNA-1
chr3_4 exon 58207904 58207963 58207904 ID=Msa0509710-mRNA-1:exon:13491;Parent=Msa0509710-mRNA-1
chr3_4 exon 58208044 58208112 58208044 ID=Msa0509710-mRNA-1:exon:13492;Parent=Msa0509710-mRNA-1
chr3_4 exon 58208262 58208345 58208262 ID=Msa0509710-mRNA-1:exon:13493;Parent=Msa0509710-mRNA-1
chr3_4 exon 58208478 58208561 58208478 ID=Msa0509710-mRNA-1:exon:13494;Parent=Msa0509710-mRNA-1
chr3_4 exon 58209646 58209731 58209646 ID=Msa0509710-mRNA-1:exon:13495;Parent=Msa0509710-mRNA-1
chr3_4 exon 58210028 58210118 58210028 ID=Msa0509710-mRNA-1:exon:13496;Parent=Msa0509710-mRNA-1
chr3_4 exon 58210523 58210603 58210523 ID=Msa0509710-mRNA-1:exon:13497;Parent=Msa0509710-mRNA-1
chr3_4 exon 58210679 58210753 58210679 ID=Msa0509710-mRNA-1:exon:13498;Parent=Msa0509710-mRNA-1
chr3_4 exon 58210838 58211199 58210838 ID=Msa0509710-mRNA-1:exon:13499;Parent=Msa0509710-mRNA-1
chr3_4 five_prime_UTR 58205264 58205424 58205264 ID=Msa0509710-mRNA-1:five_prime_utr;Parent=Msa0509710-mRNA-1
chr3_4 five_prime_UTR 58205608 58205627 58205608 ID=Msa0509710-mRNA-1:five_prime_utr;Parent=Msa0509710-mRNA-1
chr3_4 CDS 58205628 58205740 58205628 ID=Msa0509710-mRNA-1:cds;Parent=Msa0509710-mRNA-1
chr3_4 CDS 58206145 58206312 58206145 ID=Msa0509710-mRNA-1:cds;Parent=Msa0509710-mRNA-1
chr3_4 CDS 58206876 58206944 58206876 ID=Msa0509710-mRNA-1:cds;Parent=Msa0509710-mRNA-1
chr3_4 CDS 58207281 58207374 58207281 ID=Msa0509710-mRNA-1:cds;Parent=Msa0509710-mRNA-1
chr3_4 CDS 58207558 58207658 58207558 ID=Msa0509710-mRNA-1:cds;Parent=Msa0509710-mRNA-1
chr3_4 CDS 58207775 58207820 58207775 ID=Msa0509710-mRNA-1:cds;Parent=Msa0509710-mRNA-1
chr3_4 CDS 58207904 58207963 58207904 ID=Msa0509710-mRNA-1:cds;Parent=Msa0509710-mRNA-1
chr3_4 CDS 58208044 58208112 58208044 ID=Msa0509710-mRNA-1:cds;Parent=Msa0509710-mRNA-1
chr3_4 CDS 58208262 58208345 58208262 ID=Msa0509710-mRNA-1:cds;Parent=Msa0509710-mRNA-1
chr3_4 CDS 58208478 58208561 58208478 ID=Msa0509710-mRNA-1:cds;Parent=Msa0509710-mRNA-1
chr3_4 CDS 58209646 58209731 58209646 ID=Msa0509710-mRNA-1:cds;Parent=Msa0509710-mRNA-1
chr3_4 CDS 58210028 58210118 58210028 ID=Msa0509710-mRNA-1:cds;Parent=Msa0509710-mRNA-1
chr3_4 CDS 58210523 58210603 58210523 ID=Msa0509710-mRNA-1:cds;Parent=Msa0509710-mRNA-1
chr3_4 CDS 58210679 58210753 58210679 ID=Msa0509710-mRNA-1:cds;Parent=Msa0509710-mRNA-1
chr3_4 CDS 58210838 58210972 58210838 ID=Msa0509710-mRNA-1:cds;Parent=Msa0509710-mRNA-1
chr3_4 three_prime_UTR 58210973 58211199 58210973 ID=Msa0509710-mRNA-1:three_prime_utr;Parent=Msa0509710-mRNA-1
Gene Sequence

>Msa0509710

ATGCCTGAGGTTAGGATCATTGCCAAGAATTTCATGGACATGGTGGCTTCAATGCCTGCCATCAAACTTGATAAACTCTACGAGAATGGATTCATCTGCGAAGCTATTCTCAGGTCTCTTCCGCCTCTTGCAAAGAAGTATGTGTTACAGTTATTGCATATTGATGGACCTGTGCCGGCTAAGTTATTGGAGGAATGGGTGCTTCCAGATGGTCTTTCAAAGCACAAAGTTGCCATTGATAGATTGGTTCAATTGAGAGTTTTTGTTGAAGCTCTTGACAGGAAGAACGAAAAAACTTACAAAGTTAATTCAACATATCAGAAAAGTCTCCAGAATCTTTTAGTACATGGTGGAACTTTGCCGAGGGAATCAATGCCTTCTAATATTACTGTGAGGCTCCCAACCTTAGAGGATCTTGAGACTTATGCTCTGGAACAATGGGAGTGTTTCTTGTTGCAACTTATAAGCCCAAGTCATGTTGACAAGACCTTAAACATAAGCTCTTCTTTGATGAAAATTTTCCAGCGGCGTCTCCTGAGTCAGAGAGACAGAGAAGCTCCAAAATTAACTGAGAGTGGCTTCCAGTTTTTGCTGATGGATACAAATGCACAACTTTGGTACATCATCAGGGAATATATCACTAATTCTGAGGAGAGAGGTGTTGATGCTGGTGACTTGATATCATTCATGCTGGAGCTTAGTTTTCATGTCATTGGGGAGGCATATAATATAAACACATTGACCGAATTTCAGAGGAACATAATTAAGGACCTTGCAGACCTTGGGCTGGTCAAACTTCAACAGGGCAGGAAAGAAAGTTGGTTTATACCAACAAAATTAGCAACAAACCTTTCAGTGAGCATGACTGAATCATCATCAAGAAAAGAGGGATTTGTTGTTGTGGAAACAAATTTTAGAGTTTATGCTTACTCGACTTCAAAATTACACTGTGAGATATTGCGGTTATTTTCAAGGGTAGAGTATCAACTTCCAAATCTTATTGTTGGAGCTATTACAAAAGAAAGCTTGTATAATGCTTTTGACAATGGCATTACAGCAGACCAGATAGTCAGTTTCCTTCGGCAGAATGCTCATCCTCGTGTTGCACAGAGGGTACCAGCAGTGCCTGAAAATGTCACAGATCAGATTAGGTTGTGGGAATCAGATCTAAACAGAGTTGAGATGACAGAAGCATATTATTATGACGAGTTCCCATCCAGGGATGTATTTGAAGGTGCCTGTGACTGCGCCAGAGAATGGAGTGGTTTATTATGGGAAGATTCAAAGAAGATGCTTTTGGTGGTCAAGTCTGAGGTTCATACTTACGTACGAGATTTTTTACGCCGCCAAAAGTAG

Protein sequence

>Msa0509710

MPEVRIIAKNFMDMVASMPAIKLDKLYENGFICEAILRSLPPLAKKYVLQLLHIDGPVPAKLLEEWVLPDGLSKHKVAIDRLVQLRVFVEALDRKNEKTYKVNSTYQKSLQNLLVHGGTLPRESMPSNITVRLPTLEDLETYALEQWECFLLQLISPSHVDKTLNISSSLMKIFQRRLLSQRDREAPKLTESGFQFLLMDTNAQLWYIIREYITNSEERGVDAGDLISFMLELSFHVIGEAYNINTLTEFQRNIIKDLADLGLVKLQQGRKESWFIPTKLATNLSVSMTESSSRKEGFVVVETNFRVYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKESLYNAFDNGITADQIVSFLRQNAHPRVAQRVPAVPENVTDQIRLWESDLNRVEMTEAYYYDEFPSRDVFEGACDCAREWSGLLWEDSKKMLLVVKSEVHTYVRDFLRRQK*