Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001444.t1 | XP_003630831.2 | 98.2 | 110 | 2 | 0 | 1 | 110 | 1 | 110 | 4.50E-51 | 210.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001444.t1 | A0L5Z9 | 56.1 | 107 | 46 | 1 | 5 | 110 | 8 | 114 | 3.9e-27 | 122.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001444.t1 | G7L907 | 98.2 | 110 | 2 | 0 | 1 | 110 | 1 | 110 | 3.3e-51 | 210.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene015732 | MS.gene001444 | PPI |
| MS.gene001444 | MS.gene06427 | PPI |
| MS.gene001444 | MS.gene30981 | PPI |
| MS.gene001444 | MS.gene043435 | PPI |
| MS.gene001444 | MS.gene60861 | PPI |
| MS.gene34167 | MS.gene001444 | PPI |
| MS.gene001444 | MS.gene001687 | PPI |
| MS.gene001444 | MS.gene005865 | PPI |
| MS.gene05937 | MS.gene001444 | PPI |
| MS.gene013330 | MS.gene001444 | PPI |
| MS.gene001444 | MS.gene001446 | PPI |
| MS.gene001444 | MS.gene026968 | PPI |
| MS.gene60589 | MS.gene001444 | PPI |
| MS.gene049140 | MS.gene001444 | PPI |
| MS.gene001444 | MS.gene028903 | PPI |
| MS.gene001444 | MS.gene04780 | PPI |
| MS.gene001444 | MS.gene055808 | PPI |
| MS.gene001444 | MS.gene015732 | PPI |
| MS.gene31468 | MS.gene001444 | PPI |
| MS.gene001444 | MS.gene82915 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001444.t1 | MTR_8g103900 | 98.182 | 110 | 2 | 0 | 1 | 110 | 1 | 110 | 9.29e-77 | 223 |
| MS.gene001444.t1 | MTR_3g095900 | 97.273 | 110 | 3 | 0 | 1 | 110 | 1 | 110 | 2.55e-76 | 222 |
| MS.gene001444.t1 | MTR_3g062930 | 43.519 | 108 | 61 | 0 | 3 | 110 | 104 | 211 | 2.67e-27 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001444.t1 | AT5G09770 | 85.455 | 110 | 16 | 0 | 1 | 110 | 1 | 110 | 2.29e-67 | 200 |
| MS.gene001444.t1 | AT5G64650 | 85.455 | 110 | 16 | 0 | 1 | 110 | 1 | 110 | 3.36e-67 | 199 |
| MS.gene001444.t1 | AT3G54210 | 44.762 | 105 | 58 | 0 | 6 | 110 | 104 | 208 | 1.43e-27 | 100 |
Find 30 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAGGCTAAGGAGGTTAGA+AGG | 0.294585 | 4.1:-2464206 | MS.gene001444:intron |
| TAGAAGGGTTGCAGATAATA+TGG | 0.357326 | 4.1:-2464190 | MS.gene001444:CDS |
| TGTTTACAGAACTGGCTTAT+CGG | 0.376930 | 4.1:-2462149 | MS.gene001444:CDS |
| TCACAAGCTGTTTACAGAAC+TGG | 0.397878 | 4.1:-2462157 | MS.gene001444:CDS |
| TCGATTCAGCTTCCTGAACT+TGG | 0.412475 | 4.1:+2464507 | None:intergenic |
| CTGAGAAAATGACCAAGTTC+AGG | 0.415630 | 4.1:-2464519 | None:intergenic |
| ATAGAACTGGTGGATATACT+AGG | 0.438895 | 4.1:-2462034 | MS.gene001444:CDS |
| TTAGGCTAAGGAGGTTAGAA+GGG | 0.463555 | 4.1:-2464205 | MS.gene001444:intron |
| AGCTCGCCTTGCAGCACATA+CGG | 0.485413 | 4.1:+2462209 | None:intergenic |
| TTAACCTGAGCATGGATATC+CGG | 0.493435 | 4.1:+2464473 | None:intergenic |
| AACAGAGATTTACTCAATAT+AGG | 0.495924 | 4.1:+2461968 | None:intergenic |
| GTGGATATACTAGGGTGTTA+CGG | 0.513509 | 4.1:-2462025 | MS.gene001444:CDS |
| TATGGTACAGCTTGGTAAAG+AGG | 0.517654 | 4.1:-2464172 | MS.gene001444:intron |
| TAGAACCATGGTCTCGCAGT+TGG | 0.542039 | 4.1:-2464364 | MS.gene001444:CDS |
| TGAATCGAGAAACGTCTCAC+CGG | 0.546451 | 4.1:-2464492 | MS.gene001444:CDS |
| TTGTTATTTATTTAGAACCA+TGG | 0.549464 | 4.1:-2464376 | MS.gene001444:intron |
| ATTTACTCAATATAGGCCAT+TGG | 0.558368 | 4.1:+2461975 | None:intergenic |
| TTACGGACTCGCATTCGAGT+TGG | 0.558431 | 4.1:-2462008 | MS.gene001444:CDS |
| CTCACCGGATATCCATGCTC+AGG | 0.569855 | 4.1:-2464477 | MS.gene001444:intron |
| AGTTGGTGATGCTGCACCAA+TGG | 0.577706 | 4.1:-2461991 | MS.gene001444:CDS |
| CCATGGTCTCGCAGTTGGTG+AGG | 0.580724 | 4.1:-2464359 | MS.gene001444:CDS |
| CATTGAAACTACTATTACCA+AGG | 0.585744 | 4.1:-2464328 | MS.gene001444:intron |
| GCAGATAATATGGTACAGCT+TGG | 0.590005 | 4.1:-2464180 | MS.gene001444:CDS |
| CCTCACCAACTGCGAGACCA+TGG | 0.601685 | 4.1:+2464359 | None:intergenic |
| TAGAACTGGTGGATATACTA+GGG | 0.605628 | 4.1:-2462033 | MS.gene001444:CDS |
| AAAGCATGTTAACCTGAGCA+TGG | 0.605726 | 4.1:+2464465 | None:intergenic |
| AGGGATCCGTATGTGCTGCA+AGG | 0.620707 | 4.1:-2462215 | MS.gene001444:CDS |
| GTGTTGTGCAGAGATAGAAC+TGG | 0.623312 | 4.1:-2462047 | MS.gene001444:intron |
| TTGTGCAGAGATAGAACTGG+TGG | 0.666108 | 4.1:-2462044 | MS.gene001444:intron |
| CGAGCTGCTAGTTTCGTGCG+AGG | 0.670232 | 4.1:-2462192 | MS.gene001444:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGGTTTAAAAAATATATATT+GGG | + | chr4.1:2462447-2462466 | None:intergenic | 10.0% |
| !!! | AAATTTAATTTATATTACCT+TGG | + | chr4.1:2462184-2462203 | None:intergenic | 10.0% |
| !! | CTGGTTTAAAAAATATATAT+TGG | + | chr4.1:2462448-2462467 | None:intergenic | 15.0% |
| !! | AACAAAAGTAGAGAAAAATA+AGG | + | chr4.1:2463612-2463631 | None:intergenic | 20.0% |
| !! | AAGAAAAAAAAAAATAGGCA+TGG | + | chr4.1:2462066-2462085 | None:intergenic | 20.0% |
| !! | AATGCTTGAAATATAAAGAA+TGG | - | chr4.1:2463713-2463732 | MS.gene001444:intron | 20.0% |
| !! | AGAAAAAAAAAAATAGGCAT+GGG | + | chr4.1:2462065-2462084 | None:intergenic | 20.0% |
| !! | ATATTATAACTACTAATCAG+CGG | - | chr4.1:2463207-2463226 | MS.gene001444:intron | 20.0% |
| !! | GAAGGAAGAAAAAAAAAAAT+AGG | + | chr4.1:2462071-2462090 | None:intergenic | 20.0% |
| !! | GAATTTAAATTAAAGTTTGC+TGG | - | chr4.1:2462250-2462269 | MS.gene001444:intron | 20.0% |
| !! | TAATGAACTGGATAAAAATA+TGG | - | chr4.1:2462879-2462898 | MS.gene001444:intron | 20.0% |
| !!! | ATTTTTCTCTACTTTTGTTT+TGG | - | chr4.1:2463613-2463632 | MS.gene001444:intron | 20.0% |
| !!! | TTGTTATTTATTTAGAACCA+TGG | - | chr4.1:2462116-2462135 | MS.gene001444:intron | 20.0% |
| ! | AAAGTAGAGAAAAATAAGGA+AGG | + | chr4.1:2463608-2463627 | None:intergenic | 25.0% |
| ! | AACATATAACACTTGAATAC+TGG | + | chr4.1:2462467-2462486 | None:intergenic | 25.0% |
| ! | AAGAACAATTAACTTAATGC+AGG | - | chr4.1:2463755-2463774 | MS.gene001444:intron | 25.0% |
| ! | AATATATATTGGGTGATCAA+TGG | + | chr4.1:2462437-2462456 | None:intergenic | 25.0% |
| ! | AGAACAATTAACTTAATGCA+GGG | - | chr4.1:2463756-2463775 | MS.gene001444:intron | 25.0% |
| ! | AGTTTACACGATAAATTGTT+AGG | - | chr4.1:2464257-2464276 | MS.gene001444:intron | 25.0% |
| ! | ATAAAAAATATCCATAGCCA+TGG | + | chr4.1:2464154-2464173 | None:intergenic | 25.0% |
| ! | ATAAATGTTGAGTAAATCAG+TGG | - | chr4.1:2463123-2463142 | MS.gene001444:intron | 25.0% |
| ! | ATCTTGAGCATAAATTTGAT+AGG | - | chr4.1:2464183-2464202 | MS.gene001444:CDS | 25.0% |
| ! | GTTTACACGATAAATTGTTA+GGG | - | chr4.1:2464258-2464277 | MS.gene001444:intron | 25.0% |
| ! | TAAATGTTGAGTAAATCAGT+GGG | - | chr4.1:2463124-2463143 | MS.gene001444:intron | 25.0% |
| ! | TATTATAACTACTAATCAGC+GGG | - | chr4.1:2463208-2463227 | MS.gene001444:intron | 25.0% |
| ! | TTAAAAGAAAGCAGTTATGT+AGG | + | chr4.1:2463871-2463890 | None:intergenic | 25.0% |
| ! | TTAAGATCCATTTAGTAAAC+TGG | - | chr4.1:2463797-2463816 | MS.gene001444:intron | 25.0% |
| ! | TTACTCAACATTTATCTTCA+GGG | + | chr4.1:2463118-2463137 | None:intergenic | 25.0% |
| ! | TTTACTCAACATTTATCTTC+AGG | + | chr4.1:2463119-2463138 | None:intergenic | 25.0% |
| !! | AATTTGATCCTATGCATTTT+CGG | - | chr4.1:2462199-2462218 | MS.gene001444:CDS | 25.0% |
| !! | ACTGGATAAAAATATGGTTT+TGG | - | chr4.1:2462885-2462904 | MS.gene001444:intron | 25.0% |
| !! | AGTAGTTGATATTTGTTTGT+TGG | - | chr4.1:2463656-2463675 | MS.gene001444:intron | 25.0% |
| !! | GTTTAAGTTCAAAAAGTAAG+AGG | - | chr4.1:2463077-2463096 | MS.gene001444:intron | 25.0% |
| !! | TATTGATAGTAGCATATTAG+AGG | + | chr4.1:2463569-2463588 | None:intergenic | 25.0% |
| !!! | CAAACAATATTTTTTCAACC+TGG | - | chr4.1:2463055-2463074 | MS.gene001444:intron | 25.0% |
| !!! | CTGGTTGTAATTTTGATTTT+AGG | - | chr4.1:2462269-2462288 | MS.gene001444:intron | 25.0% |
| !!! | GTAATTTTGATTTTAGGCTA+AGG | - | chr4.1:2462275-2462294 | MS.gene001444:intron | 25.0% |
| !!! | TGGTTGTTTGATTACTTTTA+GGG | - | chr4.1:2463633-2463652 | MS.gene001444:intron | 25.0% |
| !!! | TTACTTTTTGAACTTAAACC+AGG | + | chr4.1:2463076-2463095 | None:intergenic | 25.0% |
| !!! | TTGGTTGTTTGATTACTTTT+AGG | - | chr4.1:2463632-2463651 | MS.gene001444:intron | 25.0% |
| AAAAAAAAAATAGGCATGGG+AGG | + | chr4.1:2462062-2462081 | None:intergenic | 30.0% | |
| ACGGAAATAAAACACAAATG+AGG | + | chr4.1:2463920-2463939 | None:intergenic | 30.0% | |
| CAAATTTATGCTCAAGATCA+AGG | + | chr4.1:2464181-2464200 | None:intergenic | 30.0% | |
| CATTGAAACTACTATTACCA+AGG | - | chr4.1:2462164-2462183 | MS.gene001444:CDS | 30.0% | |
| GTAAGAGGTTTGAAAAATGT+CGG | - | chr4.1:2463092-2463111 | MS.gene001444:intron | 30.0% | |
| TAATCATAGCACAAGTAAGA+CGG | + | chr4.1:2462379-2462398 | None:intergenic | 30.0% | |
| TCCTATTCAACAGATAGTTT+GGG | + | chr4.1:2463359-2463378 | None:intergenic | 30.0% | |
| TGAATACTGATGAAAGATCA+GGG | - | chr4.1:2463231-2463250 | MS.gene001444:intron | 30.0% | |
| TTCTTAAACCGAAAATGCAT+AGG | + | chr4.1:2462210-2462229 | None:intergenic | 30.0% | |
| ! | AACTTTTGCAGAACAGATTT+TGG | + | chr4.1:2463382-2463401 | None:intergenic | 30.0% |
| ! | ATTTATCTAGCTTGACTACT+TGG | - | chr4.1:2464224-2464243 | MS.gene001444:intron | 30.0% |
| ! | CGTTTAGTGCTTTTACATTT+GGG | - | chr4.1:2463937-2463956 | MS.gene001444:intron | 30.0% |
| ! | GTTTCTCTTGTAGTTTTTCT+AGG | + | chr4.1:2462838-2462857 | None:intergenic | 30.0% |
| ! | TCTACCATCTTTTCTACAAT+AGG | + | chr4.1:2462642-2462661 | None:intergenic | 30.0% |
| !! | CCAAATGTAAAAGCACTAAA+CGG | + | chr4.1:2463939-2463958 | None:intergenic | 30.0% |
| !!! | ATTTTGATTTTAGGCTAAGG+AGG | - | chr4.1:2462278-2462297 | MS.gene001444:intron | 30.0% |
| AACTGAGGCAATCAGTATAA+TGG | + | chr4.1:2463477-2463496 | None:intergenic | 35.0% | |
| AACTGTAACAAACATGCATG+TGG | + | chr4.1:2464070-2464089 | None:intergenic | 35.0% | |
| AATATAAAGAATGGCGACAC+TGG | - | chr4.1:2463722-2463741 | MS.gene001444:intron | 35.0% | |
| AGATGGTAGAAACAAGACTT+AGG | - | chr4.1:2462652-2462671 | MS.gene001444:intron | 35.0% | |
| AGCACCTATTGTAGAAAAGA+TGG | - | chr4.1:2462635-2462654 | MS.gene001444:intron | 35.0% | |
| CGCATATCTTATTCTTGTGT+TGG | + | chr4.1:2462544-2462563 | None:intergenic | 35.0% | |
| CTTAAGTTAACGTTCTAACG+TGG | - | chr4.1:2463679-2463698 | MS.gene001444:intron | 35.0% | |
| GAATACTGATGAAAGATCAG+GGG | - | chr4.1:2463232-2463251 | MS.gene001444:intron | 35.0% | |
| GATCAATGGTAAAGAATGAG+AGG | + | chr4.1:2462423-2462442 | None:intergenic | 35.0% | |
| GGATCTAGAGATTAATGAAC+TGG | - | chr4.1:2462867-2462886 | MS.gene001444:intron | 35.0% | |
| GTCCTATTCAACAGATAGTT+TGG | + | chr4.1:2463360-2463379 | None:intergenic | 35.0% | |
| GTGAATACTGATGAAAGATC+AGG | - | chr4.1:2463230-2463249 | MS.gene001444:intron | 35.0% | |
| TACAAGAGAAACTATCGAGA+AGG | - | chr4.1:2462846-2462865 | MS.gene001444:intron | 35.0% | |
| TAGAAGGGTTGCAGATAATA+TGG | - | chr4.1:2462302-2462321 | MS.gene001444:intron | 35.0% | |
| TCCCAAACTATCTGTTGAAT+AGG | - | chr4.1:2463355-2463374 | MS.gene001444:intron | 35.0% | |
| TGAACCAACTAATTGAGAGA+GGG | + | chr4.1:2463305-2463324 | None:intergenic | 35.0% | |
| TGATAGAACCAACACTAGAT+AGG | - | chr4.1:2462610-2462629 | MS.gene001444:intron | 35.0% | |
| TGATGTCTCCAATAAAACCA+TGG | - | chr4.1:2464134-2464153 | MS.gene001444:intron | 35.0% | |
| TGCAGAAAAGATTGAGAAAC+AGG | + | chr4.1:2463848-2463867 | None:intergenic | 35.0% | |
| TTGAACCAACTAATTGAGAG+AGG | + | chr4.1:2463306-2463325 | None:intergenic | 35.0% | |
| ! | ATAGAACTGGTGGATATACT+AGG | - | chr4.1:2464458-2464477 | MS.gene001444:intron | 35.0% |
| ! | CCGTTTAGTGCTTTTACATT+TGG | - | chr4.1:2463936-2463955 | MS.gene001444:intron | 35.0% |
| ! | TAGAACTGGTGGATATACTA+GGG | - | chr4.1:2464459-2464478 | MS.gene001444:intron | 35.0% |
| ! | TGTTTACAGAACTGGCTTAT+CGG | - | chr4.1:2464343-2464362 | MS.gene001444:CDS | 35.0% |
| ! | TTATACTGATTGCCTCAGTT+CGG | - | chr4.1:2463477-2463496 | MS.gene001444:intron | 35.0% |
| ! | TTATGGATTTTCCGCTAACT+CGG | - | chr4.1:2463260-2463279 | MS.gene001444:intron | 35.0% |
| !! | AAAGATCAGGGGTTAGTTTA+TGG | - | chr4.1:2463243-2463262 | MS.gene001444:intron | 35.0% |
| !!! | ATCCATAGCCATGGTTTTAT+TGG | + | chr4.1:2464145-2464164 | None:intergenic | 35.0% |
| !!! | TGGTTTTATTGGAGACATCA+TGG | + | chr4.1:2464134-2464153 | None:intergenic | 35.0% |
| !!! | TGGTTTTGGATAGAACACTA+TGG | - | chr4.1:2462899-2462918 | MS.gene001444:intron | 35.0% |
| AAAAATAGGCATGGGAGGAT+TGG | + | chr4.1:2462057-2462076 | None:intergenic | 40.0% | |
| AAAGCATGTTAACCTGAGCA+TGG | + | chr4.1:2462030-2462049 | None:intergenic | 40.0% | |
| AAGGAGCAAGTGGAAGAAAT+AGG | + | chr4.1:2462746-2462765 | None:intergenic | 40.0% | |
| ACATCTAGAAAGAAGACCTG+TGG | - | chr4.1:2462683-2462702 | MS.gene001444:intron | 40.0% | |
| AGAAAGAAGACCTGTGGTAA+AGG | - | chr4.1:2462689-2462708 | MS.gene001444:intron | 40.0% | |
| AGTAGCCACAGTTCAGAATT+TGG | + | chr4.1:2462093-2462112 | None:intergenic | 40.0% | |
| ATATTGATGAAAGACCGCCA+GGG | - | chr4.1:2463150-2463169 | MS.gene001444:intron | 40.0% | |
| ATGTTGAGTAAATCAGTGGG+TGG | - | chr4.1:2463127-2463146 | MS.gene001444:intron | 40.0% | |
| CTCCAATAAAACCATGGCTA+TGG | - | chr4.1:2464140-2464159 | MS.gene001444:intron | 40.0% | |
| GAAACAAGACTTAGGTGGTT+TGG | - | chr4.1:2462660-2462679 | MS.gene001444:intron | 40.0% | |
| GCAGATAATATGGTACAGCT+TGG | - | chr4.1:2462312-2462331 | MS.gene001444:intron | 40.0% | |
| GTAACAAACATGCATGTGGA+AGG | + | chr4.1:2464066-2464085 | None:intergenic | 40.0% | |
| GTGTGCTCCAGTTTACTAAA+TGG | + | chr4.1:2463807-2463826 | None:intergenic | 40.0% | |
| TATGGTACAGCTTGGTAAAG+AGG | - | chr4.1:2462320-2462339 | MS.gene001444:intron | 40.0% | |
| TCACAAGCTGTTTACAGAAC+TGG | - | chr4.1:2464335-2464354 | MS.gene001444:CDS | 40.0% | |
| TCCTTCCAAATTCTGAACTG+TGG | - | chr4.1:2462085-2462104 | MS.gene001444:intron | 40.0% | |
| TGGTAGAAACAAGACTTAGG+TGG | - | chr4.1:2462655-2462674 | MS.gene001444:intron | 40.0% | |
| TTAACCTGAGCATGGATATC+CGG | + | chr4.1:2462022-2462041 | None:intergenic | 40.0% | |
| TTAGGCTAAGGAGGTTAGAA+GGG | - | chr4.1:2462287-2462306 | MS.gene001444:intron | 40.0% | |
| TTCTCCCTCTCTCAATTAGT+TGG | - | chr4.1:2463298-2463317 | MS.gene001444:intron | 40.0% | |
| TTTAGGCTAAGGAGGTTAGA+AGG | - | chr4.1:2462286-2462305 | MS.gene001444:intron | 40.0% | |
| TTTAGTAAACTGGAGCACAC+AGG | - | chr4.1:2463807-2463826 | MS.gene001444:intron | 40.0% | |
| ! | AAGAAATAGGTGCTATCCAC+AGG | + | chr4.1:2462733-2462752 | None:intergenic | 40.0% |
| ! | ATGGCAACTAATGGTGGAAA+AGG | + | chr4.1:2464115-2464134 | None:intergenic | 40.0% |
| ! | CAGAGATGAGGATGTTACTT+TGG | - | chr4.1:2462567-2462586 | MS.gene001444:intron | 40.0% |
| ! | GTGGATATACTAGGGTGTTA+CGG | - | chr4.1:2464467-2464486 | MS.gene001444:intron | 40.0% |
| ! | TCTAGGTTTTCCTTTACCAC+AGG | + | chr4.1:2462702-2462721 | None:intergenic | 40.0% |
| ! | TGGCAACTAATGGTGGAAAA+GGG | + | chr4.1:2464114-2464133 | None:intergenic | 40.0% |
| !! | ACTATGTTTTAAACCCCTGG+CGG | + | chr4.1:2463167-2463186 | None:intergenic | 40.0% |
| !! | AGGATGTTACTTTGGATGTG+TGG | - | chr4.1:2462575-2462594 | MS.gene001444:intron | 40.0% |
| !! | CTGACTATGTTTTAAACCCC+TGG | + | chr4.1:2463170-2463189 | None:intergenic | 40.0% |
| !! | TCTACCTCTAGGCTTTGTTT+GGG | + | chr4.1:2462809-2462828 | None:intergenic | 40.0% |
| !!! | GAGGGTTTTGGAAAAAAGGA+AGG | + | chr4.1:2462765-2462784 | None:intergenic | 40.0% |
| AACTCCCAAACAAAGCCTAG+AGG | - | chr4.1:2462802-2462821 | MS.gene001444:intron | 45.0% | |
| AAGTCCCGCTTAAGACATGT+TGG | - | chr4.1:2462493-2462512 | MS.gene001444:intron | 45.0% | |
| ACATGTTGGGAGCAGAATGT+TGG | - | chr4.1:2462507-2462526 | MS.gene001444:intron | 45.0% | |
| AGATATGCGTAGCAGAGATG+AGG | - | chr4.1:2462555-2462574 | MS.gene001444:intron | 45.0% | |
| AGCACACAGGCTTCATAGTT+TGG | - | chr4.1:2463820-2463839 | MS.gene001444:intron | 45.0% | |
| AGTCCCGCTTAAGACATGTT+GGG | - | chr4.1:2462494-2462513 | MS.gene001444:intron | 45.0% | |
| ATGTAGCTGATCCCACTTAG+TGG | - | chr4.1:2462935-2462954 | MS.gene001444:intron | 45.0% | |
| CTAGGTCTTTCTCTACCTCT+AGG | + | chr4.1:2462820-2462839 | None:intergenic | 45.0% | |
| GACATCATGGCAACTAATGG+TGG | + | chr4.1:2464121-2464140 | None:intergenic | 45.0% | |
| GATATTGATGAAAGACCGCC+AGG | - | chr4.1:2463149-2463168 | MS.gene001444:intron | 45.0% | |
| GCCACAGTTCAGAATTTGGA+AGG | + | chr4.1:2462089-2462108 | None:intergenic | 45.0% | |
| GGAAAAAAGGAAGGAGCAAG+TGG | + | chr4.1:2462756-2462775 | None:intergenic | 45.0% | |
| GGAGACATCATGGCAACTAA+TGG | + | chr4.1:2464124-2464143 | None:intergenic | 45.0% | |
| GTGTTGTGCAGAGATAGAAC+TGG | - | chr4.1:2464445-2464464 | MS.gene001444:intron | 45.0% | |
| TATTGATGAAAGACCGCCAG+GGG | - | chr4.1:2463151-2463170 | MS.gene001444:intron | 45.0% | |
| TCGATTCAGCTTCCTGAACT+TGG | + | chr4.1:2461988-2462007 | None:intergenic | 45.0% | |
| TGAATCGAGAAACGTCTCAC+CGG | - | chr4.1:2462000-2462019 | MS.gene001444:CDS | 45.0% | |
| TGATCCCACTTAGTGGGATA+AGG | - | chr4.1:2462942-2462961 | MS.gene001444:intron | 45.0% | |
| TGCAACACTATACCGAACTG+AGG | + | chr4.1:2463492-2463511 | None:intergenic | 45.0% | |
| TGCTCCCAACATGTCTTAAG+CGG | + | chr4.1:2462501-2462520 | None:intergenic | 45.0% | |
| TGTAGCTGATCCCACTTAGT+GGG | - | chr4.1:2462936-2462955 | MS.gene001444:intron | 45.0% | |
| TTGTGCAGAGATAGAACTGG+TGG | - | chr4.1:2464448-2464467 | MS.gene001444:intron | 45.0% | |
| ! | AAATAGGTGCTATCCACAGG+TGG | + | chr4.1:2462730-2462749 | None:intergenic | 45.0% |
| ! | AATAGGTGCTATCCACAGGT+GGG | + | chr4.1:2462729-2462748 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr4.1:2462949-2462968 | None:intergenic | 45.0% |
| ! | CTTTGTTTGGGAGTTTGGAG+GGG | + | chr4.1:2462797-2462816 | None:intergenic | 45.0% |
| ! | GGTGCTATCCTATCTAGTGT+TGG | + | chr4.1:2462621-2462640 | None:intergenic | 45.0% |
| !! | CTAGGCTTTGTTTGGGAGTT+TGG | + | chr4.1:2462802-2462821 | None:intergenic | 45.0% |
| !! | CTCTACCTCTAGGCTTTGTT+TGG | + | chr4.1:2462810-2462829 | None:intergenic | 45.0% |
| !! | GCTTTGTTTGGGAGTTTGGA+GGG | + | chr4.1:2462798-2462817 | None:intergenic | 45.0% |
| !!! | AGGGGAGGGTTTTGGAAAAA+AGG | + | chr4.1:2462769-2462788 | None:intergenic | 45.0% |
| ACAGAGAGAAGCCGAGTTAG+CGG | + | chr4.1:2463274-2463293 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr4.1:2462947-2462966 | MS.gene001444:intron | 50.0% | |
| CTTAGTGGGATAAGGCTTGG+TGG | - | chr4.1:2462950-2462969 | MS.gene001444:intron | 50.0% | |
| GCTCCCAACATGTCTTAAGC+GGG | + | chr4.1:2462500-2462519 | None:intergenic | 50.0% | |
| GGGACGCAGCTTCAATCTAA+AGG | + | chr4.1:2463339-2463358 | None:intergenic | 50.0% | |
| GTTGGGAGCAGAATGTTGGA+CGG | - | chr4.1:2462511-2462530 | MS.gene001444:intron | 50.0% | |
| TAGAACCATGGTCTCGCAGT+TGG | - | chr4.1:2462128-2462147 | MS.gene001444:intron | 50.0% | |
| TTACGGACTCGCATTCGAGT+TGG | - | chr4.1:2464484-2464503 | MS.gene001444:CDS | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr4.1:2462950-2462969 | None:intergenic | 50.0% |
| !! | AGTTGGTGATGCTGCACCAA+TGG | - | chr4.1:2464501-2464520 | MS.gene001444:CDS | 50.0% |
| !! | GGCTTTGTTTGGGAGTTTGG+AGG | + | chr4.1:2462799-2462818 | None:intergenic | 50.0% |
| AACCTAGAAACGCCCACCTG+TGG | - | chr4.1:2462714-2462733 | MS.gene001444:intron | 55.0% | |
| AGCTCGCCTTGCAGCACATA+CGG | + | chr4.1:2464286-2464305 | None:intergenic | 55.0% | |
| AGGGATCCGTATGTGCTGCA+AGG | - | chr4.1:2464277-2464296 | MS.gene001444:intron | 55.0% | |
| ATCCACAGGTGGGCGTTTCT+AGG | + | chr4.1:2462719-2462738 | None:intergenic | 55.0% | |
| CTCACCGGATATCCATGCTC+AGG | - | chr4.1:2462015-2462034 | MS.gene001444:CDS | 55.0% | |
| GTTTGGGAGTTTGGAGGGGA+GGG | + | chr4.1:2462793-2462812 | None:intergenic | 55.0% | |
| TGTTTGGGAGTTTGGAGGGG+AGG | + | chr4.1:2462794-2462813 | None:intergenic | 55.0% | |
| CCTCACCAACTGCGAGACCA+TGG | + | chr4.1:2462136-2462155 | None:intergenic | 60.0% | |
| GAGTTTGGAGGGGAGGGAAG+GGG | + | chr4.1:2462787-2462806 | None:intergenic | 60.0% | |
| GGAGTTTGGAGGGGAGGGAA+GGG | + | chr4.1:2462788-2462807 | None:intergenic | 60.0% | |
| ! | CCATGGTCTCGCAGTTGGTG+AGG | - | chr4.1:2462133-2462152 | MS.gene001444:intron | 60.0% |
| ! | CGAGCTGCTAGTTTCGTGCG+AGG | - | chr4.1:2464300-2464319 | MS.gene001444:intron | 60.0% |
| GGGAGTTTGGAGGGGAGGGA+AGG | + | chr4.1:2462789-2462808 | None:intergenic | 65.0% | |
| TTGGAGGGGAGGGAAGGGGA+GGG | + | chr4.1:2462783-2462802 | None:intergenic | 65.0% | |
| TTTGGAGGGGAGGGAAGGGG+AGG | + | chr4.1:2462784-2462803 | None:intergenic | 65.0% | |
| ! | GGGAGGGAAGGGGAGGGTTT+TGG | + | chr4.1:2462777-2462796 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 2461981 | 2464533 | 2461981 | ID=MS.gene001444 |
| chr4.1 | mRNA | 2461981 | 2464533 | 2461981 | ID=MS.gene001444.t1;Parent=MS.gene001444 |
| chr4.1 | exon | 2464478 | 2464533 | 2464478 | ID=MS.gene001444.t1.exon1;Parent=MS.gene001444.t1 |
| chr4.1 | CDS | 2464478 | 2464533 | 2464478 | ID=cds.MS.gene001444.t1;Parent=MS.gene001444.t1 |
| chr4.1 | exon | 2464329 | 2464383 | 2464329 | ID=MS.gene001444.t1.exon2;Parent=MS.gene001444.t1 |
| chr4.1 | CDS | 2464329 | 2464383 | 2464329 | ID=cds.MS.gene001444.t1;Parent=MS.gene001444.t1 |
| chr4.1 | exon | 2464173 | 2464223 | 2464173 | ID=MS.gene001444.t1.exon3;Parent=MS.gene001444.t1 |
| chr4.1 | CDS | 2464173 | 2464223 | 2464173 | ID=cds.MS.gene001444.t1;Parent=MS.gene001444.t1 |
| chr4.1 | exon | 2462144 | 2462235 | 2462144 | ID=MS.gene001444.t1.exon4;Parent=MS.gene001444.t1 |
| chr4.1 | CDS | 2462144 | 2462235 | 2462144 | ID=cds.MS.gene001444.t1;Parent=MS.gene001444.t1 |
| chr4.1 | exon | 2461981 | 2462058 | 2461981 | ID=MS.gene001444.t1.exon5;Parent=MS.gene001444.t1 |
| chr4.1 | CDS | 2461981 | 2462058 | 2461981 | ID=cds.MS.gene001444.t1;Parent=MS.gene001444.t1 |
| Gene Sequence |
| Protein sequence |
