Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05937.t1 | XP_003630831.2 | 98.2 | 110 | 2 | 0 | 1 | 110 | 1 | 110 | 4.50E-51 | 210.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05937.t1 | A0L5Z9 | 56.1 | 107 | 46 | 1 | 5 | 110 | 8 | 114 | 3.9e-27 | 122.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05937.t1 | G7L907 | 98.2 | 110 | 2 | 0 | 1 | 110 | 1 | 110 | 3.3e-51 | 210.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049140 | MS.gene05937 | 0.803417 | 3.52E-49 | -1.69E-46 |
| MS.gene049141 | MS.gene05937 | 0.822182 | 2.72E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene05937 | MS.gene005865 | PPI |
| MS.gene31468 | MS.gene05937 | PPI |
| MS.gene05937 | MS.gene001446 | PPI |
| MS.gene05937 | MS.gene026968 | PPI |
| MS.gene05937 | MS.gene04780 | PPI |
| MS.gene049140 | MS.gene05937 | PPI |
| MS.gene05937 | MS.gene001444 | PPI |
| MS.gene05937 | MS.gene028903 | PPI |
| MS.gene05937 | MS.gene055808 | PPI |
| MS.gene05937 | MS.gene015732 | PPI |
| MS.gene34167 | MS.gene05937 | PPI |
| MS.gene05937 | MS.gene60589 | PPI |
| MS.gene05937 | MS.gene82915 | PPI |
| MS.gene013330 | MS.gene05937 | PPI |
| MS.gene05937 | MS.gene001687 | PPI |
| MS.gene05937 | MS.gene06427 | PPI |
| MS.gene05937 | MS.gene30981 | PPI |
| MS.gene05937 | MS.gene043435 | PPI |
| MS.gene05937 | MS.gene60861 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05937.t1 | MTR_8g103900 | 98.182 | 110 | 2 | 0 | 1 | 110 | 1 | 110 | 9.29e-77 | 223 |
| MS.gene05937.t1 | MTR_3g095900 | 97.273 | 110 | 3 | 0 | 1 | 110 | 1 | 110 | 2.55e-76 | 222 |
| MS.gene05937.t1 | MTR_3g062930 | 43.519 | 108 | 61 | 0 | 3 | 110 | 104 | 211 | 2.67e-27 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene05937.t1 | AT5G09770 | 85.455 | 110 | 16 | 0 | 1 | 110 | 1 | 110 | 2.29e-67 | 200 |
| MS.gene05937.t1 | AT5G64650 | 85.455 | 110 | 16 | 0 | 1 | 110 | 1 | 110 | 3.36e-67 | 199 |
| MS.gene05937.t1 | AT3G54210 | 44.762 | 105 | 58 | 0 | 6 | 110 | 104 | 208 | 1.43e-27 | 100 |
Find 30 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAGGCTAAGGAGGTTAGA+AGG | 0.294585 | 4.4:-2808376 | MS.gene05937:intron |
| TAGAAGGGTTGCAGATAATA+TGG | 0.357326 | 4.4:-2808360 | MS.gene05937:CDS |
| TGTTTACAGAACTGGCTTAT+CGG | 0.376930 | 4.4:-2806319 | MS.gene05937:CDS |
| TCACAAGCTGTTTACAGAAC+TGG | 0.397878 | 4.4:-2806327 | MS.gene05937:CDS |
| TCGATTCAGCTTCCTGAACT+TGG | 0.412475 | 4.4:+2808677 | None:intergenic |
| CTGAGAAAATGACCAAGTTC+AGG | 0.415630 | 4.4:-2808689 | None:intergenic |
| ATAGAACTGGTGGATATACT+AGG | 0.438895 | 4.4:-2806204 | MS.gene05937:CDS |
| TTAGGCTAAGGAGGTTAGAA+GGG | 0.463555 | 4.4:-2808375 | MS.gene05937:intron |
| AGCTCGCCTTGCAGCACATA+CGG | 0.485413 | 4.4:+2806379 | None:intergenic |
| TTAACCTGAGCATGGATATC+CGG | 0.493435 | 4.4:+2808643 | None:intergenic |
| AACAGAGATTTACTCAATAT+AGG | 0.495924 | 4.4:+2806138 | None:intergenic |
| GTGGATATACTAGGGTGTTA+CGG | 0.513509 | 4.4:-2806195 | MS.gene05937:CDS |
| TATGGTACAGCTTGGTAAAG+AGG | 0.517654 | 4.4:-2808342 | MS.gene05937:intron |
| TAGAACCATGGTCTCGCAGT+TGG | 0.542039 | 4.4:-2808534 | MS.gene05937:CDS |
| TGAATCGAGAAACGTCTCAC+CGG | 0.546451 | 4.4:-2808662 | MS.gene05937:CDS |
| TTGTTATTTATTTAGAACCA+TGG | 0.549464 | 4.4:-2808546 | MS.gene05937:intron |
| ATTTACTCAATATAGGCCAT+TGG | 0.558368 | 4.4:+2806145 | None:intergenic |
| TTACGGACTCGCATTCGAGT+TGG | 0.558431 | 4.4:-2806178 | MS.gene05937:CDS |
| CTCACCGGATATCCATGCTC+AGG | 0.569855 | 4.4:-2808647 | MS.gene05937:intron |
| AGTTGGTGATGCTGCACCAA+TGG | 0.577706 | 4.4:-2806161 | MS.gene05937:CDS |
| CCATGGTCTCGCAGTTGGTG+AGG | 0.580724 | 4.4:-2808529 | MS.gene05937:CDS |
| CATTGAAACTACTATTACCA+AGG | 0.585744 | 4.4:-2808498 | MS.gene05937:intron |
| GCAGATAATATGGTACAGCT+TGG | 0.590005 | 4.4:-2808350 | MS.gene05937:CDS |
| CCTCACCAACTGCGAGACCA+TGG | 0.601685 | 4.4:+2808529 | None:intergenic |
| TAGAACTGGTGGATATACTA+GGG | 0.605628 | 4.4:-2806203 | MS.gene05937:CDS |
| AAAGCATGTTAACCTGAGCA+TGG | 0.605726 | 4.4:+2808635 | None:intergenic |
| AGGGATCCGTATGTGCTGCA+AGG | 0.620707 | 4.4:-2806385 | MS.gene05937:CDS |
| GTGTTGTGCAGAGATAGAAC+TGG | 0.623312 | 4.4:-2806217 | MS.gene05937:intron |
| TTGTGCAGAGATAGAACTGG+TGG | 0.666108 | 4.4:-2806214 | MS.gene05937:intron |
| CGAGCTGCTAGTTTCGTGCG+AGG | 0.670232 | 4.4:-2806362 | MS.gene05937:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGGTTTAAAAAATATATATT+GGG | + | chr4.4:2806617-2806636 | None:intergenic | 10.0% |
| !!! | AAATTTAATTTATATTACCT+TGG | + | chr4.4:2806354-2806373 | None:intergenic | 10.0% |
| !! | CTGGTTTAAAAAATATATAT+TGG | + | chr4.4:2806618-2806637 | None:intergenic | 15.0% |
| !! | AACAAAAGTAGAGAAAAATA+AGG | + | chr4.4:2807782-2807801 | None:intergenic | 20.0% |
| !! | AAGAAAAAAAAAAAAAGGCA+TGG | + | chr4.4:2806236-2806255 | None:intergenic | 20.0% |
| !! | AATGCTTGAAATATAAAGAA+TGG | - | chr4.4:2807883-2807902 | MS.gene05937:intron | 20.0% |
| !! | ATATTATAACTACTAATCAG+CGG | - | chr4.4:2807377-2807396 | MS.gene05937:intron | 20.0% |
| !! | GAAGGAAGAAAAAAAAAAAA+AGG | + | chr4.4:2806241-2806260 | None:intergenic | 20.0% |
| !! | GAATTTAAATTAAAGTTTGC+TGG | - | chr4.4:2806420-2806439 | MS.gene05937:intron | 20.0% |
| !! | TAATGAACTGGATAAAAATA+TGG | - | chr4.4:2807049-2807068 | MS.gene05937:intron | 20.0% |
| !!! | AGAAAAAAAAAAAAAGGCAT+GGG | + | chr4.4:2806235-2806254 | None:intergenic | 20.0% |
| !!! | ATTTTTCTCTACTTTTGTTT+TGG | - | chr4.4:2807783-2807802 | MS.gene05937:intron | 20.0% |
| !!! | TTGTTATTTATTTAGAACCA+TGG | - | chr4.4:2806286-2806305 | MS.gene05937:intron | 20.0% |
| ! | AAAGTAGAGAAAAATAAGGA+AGG | + | chr4.4:2807778-2807797 | None:intergenic | 25.0% |
| ! | AACATATAACACTTGAATAC+TGG | + | chr4.4:2806637-2806656 | None:intergenic | 25.0% |
| ! | AAGAACAATTAACTTAATGC+AGG | - | chr4.4:2807925-2807944 | MS.gene05937:intron | 25.0% |
| ! | AATATATATTGGGTGATCAA+TGG | + | chr4.4:2806607-2806626 | None:intergenic | 25.0% |
| ! | AGAACAATTAACTTAATGCA+GGG | - | chr4.4:2807926-2807945 | MS.gene05937:intron | 25.0% |
| ! | AGTTTACACGATAAATTGTT+AGG | - | chr4.4:2808427-2808446 | MS.gene05937:intron | 25.0% |
| ! | ATAAAAAATATCCATAGCCA+TGG | + | chr4.4:2808324-2808343 | None:intergenic | 25.0% |
| ! | ATAAATGTTGAGTAAATCAG+TGG | - | chr4.4:2807293-2807312 | MS.gene05937:intron | 25.0% |
| ! | ATCTTGAGCATAAATTTGAT+AGG | - | chr4.4:2808353-2808372 | MS.gene05937:CDS | 25.0% |
| ! | GTTTACACGATAAATTGTTA+GGG | - | chr4.4:2808428-2808447 | MS.gene05937:intron | 25.0% |
| ! | TAAATGTTGAGTAAATCAGT+GGG | - | chr4.4:2807294-2807313 | MS.gene05937:intron | 25.0% |
| ! | TATTATAACTACTAATCAGC+GGG | - | chr4.4:2807378-2807397 | MS.gene05937:intron | 25.0% |
| ! | TTAAAAGAAAGCAGTTATGT+AGG | + | chr4.4:2808041-2808060 | None:intergenic | 25.0% |
| ! | TTAAGATCCATTTAGTAAAC+TGG | - | chr4.4:2807967-2807986 | MS.gene05937:intron | 25.0% |
| ! | TTACTCAACATTTATCTTCA+GGG | + | chr4.4:2807288-2807307 | None:intergenic | 25.0% |
| ! | TTTACTCAACATTTATCTTC+AGG | + | chr4.4:2807289-2807308 | None:intergenic | 25.0% |
| !! | AATTTGATCCTATGCATTTT+CGG | - | chr4.4:2806369-2806388 | MS.gene05937:CDS | 25.0% |
| !! | ACTGGATAAAAATATGGTTT+TGG | - | chr4.4:2807055-2807074 | MS.gene05937:intron | 25.0% |
| !! | AGTAGTTGATATTTGTTTGT+TGG | - | chr4.4:2807826-2807845 | MS.gene05937:intron | 25.0% |
| !! | GTTTAAGTTCAAAAAGTAAG+AGG | - | chr4.4:2807247-2807266 | MS.gene05937:intron | 25.0% |
| !! | TATTGATAGTAGCATATTAG+AGG | + | chr4.4:2807739-2807758 | None:intergenic | 25.0% |
| !!! | CAAACAATATTTTTTCAACC+TGG | - | chr4.4:2807225-2807244 | MS.gene05937:intron | 25.0% |
| !!! | CTGGTTGTAATTTTGATTTT+AGG | - | chr4.4:2806439-2806458 | MS.gene05937:intron | 25.0% |
| !!! | GTAATTTTGATTTTAGGCTA+AGG | - | chr4.4:2806445-2806464 | MS.gene05937:intron | 25.0% |
| !!! | TGGTTGTTTGATTACTTTTA+GGG | - | chr4.4:2807803-2807822 | MS.gene05937:intron | 25.0% |
| !!! | TTACTTTTTGAACTTAAACC+AGG | + | chr4.4:2807246-2807265 | None:intergenic | 25.0% |
| !!! | TTGGTTGTTTGATTACTTTT+AGG | - | chr4.4:2807802-2807821 | MS.gene05937:intron | 25.0% |
| ACGGAAATAAAACACAAATG+AGG | + | chr4.4:2808090-2808109 | None:intergenic | 30.0% | |
| CAAATTTATGCTCAAGATCA+AGG | + | chr4.4:2808351-2808370 | None:intergenic | 30.0% | |
| CATTGAAACTACTATTACCA+AGG | - | chr4.4:2806334-2806353 | MS.gene05937:CDS | 30.0% | |
| GTAAGAGGTTTGAAAAATGT+CGG | - | chr4.4:2807262-2807281 | MS.gene05937:intron | 30.0% | |
| TAATCATAGCACAAGTAAGA+CGG | + | chr4.4:2806549-2806568 | None:intergenic | 30.0% | |
| TCCTATTCAACAGATAGTTT+GGG | + | chr4.4:2807529-2807548 | None:intergenic | 30.0% | |
| TGAATACTGATGAAAGATCA+GGG | - | chr4.4:2807401-2807420 | MS.gene05937:intron | 30.0% | |
| TTCTTAAACCGAAAATGCAT+AGG | + | chr4.4:2806380-2806399 | None:intergenic | 30.0% | |
| ! | AAAAAAAAAAAAGGCATGGG+AGG | + | chr4.4:2806232-2806251 | None:intergenic | 30.0% |
| ! | AACTTTTGCAGAACAGATTT+TGG | + | chr4.4:2807552-2807571 | None:intergenic | 30.0% |
| ! | ATTTATCTAGCTTGACTACT+TGG | - | chr4.4:2808394-2808413 | MS.gene05937:intron | 30.0% |
| ! | CGTTTAGTGCTTTTACATTT+GGG | - | chr4.4:2808107-2808126 | MS.gene05937:intron | 30.0% |
| ! | GTTTCTCTTGTAGTTTTTCT+AGG | + | chr4.4:2807008-2807027 | None:intergenic | 30.0% |
| ! | TCTACCATCTTTTCTACAAT+AGG | + | chr4.4:2806812-2806831 | None:intergenic | 30.0% |
| !! | CCAAATGTAAAAGCACTAAA+CGG | + | chr4.4:2808109-2808128 | None:intergenic | 30.0% |
| !!! | ATTTTGATTTTAGGCTAAGG+AGG | - | chr4.4:2806448-2806467 | MS.gene05937:intron | 30.0% |
| AACTGAGGCAATCAGTATAA+TGG | + | chr4.4:2807647-2807666 | None:intergenic | 35.0% | |
| AACTGTAACAAACATGCATG+TGG | + | chr4.4:2808240-2808259 | None:intergenic | 35.0% | |
| AATATAAAGAATGGCGACAC+TGG | - | chr4.4:2807892-2807911 | MS.gene05937:intron | 35.0% | |
| AGATGGTAGAAACAAGACTT+AGG | - | chr4.4:2806822-2806841 | MS.gene05937:intron | 35.0% | |
| AGCACCTATTGTAGAAAAGA+TGG | - | chr4.4:2806805-2806824 | MS.gene05937:intron | 35.0% | |
| CGCATATCTTATTCTTGTGT+TGG | + | chr4.4:2806714-2806733 | None:intergenic | 35.0% | |
| CTTAAGTTAACGTTCTAACG+TGG | - | chr4.4:2807849-2807868 | MS.gene05937:intron | 35.0% | |
| GAATACTGATGAAAGATCAG+GGG | - | chr4.4:2807402-2807421 | MS.gene05937:intron | 35.0% | |
| GATCAATGGTAAAGAATGAG+AGG | + | chr4.4:2806593-2806612 | None:intergenic | 35.0% | |
| GGATCTAGAGATTAATGAAC+TGG | - | chr4.4:2807037-2807056 | MS.gene05937:intron | 35.0% | |
| GTCCTATTCAACAGATAGTT+TGG | + | chr4.4:2807530-2807549 | None:intergenic | 35.0% | |
| GTGAATACTGATGAAAGATC+AGG | - | chr4.4:2807400-2807419 | MS.gene05937:intron | 35.0% | |
| TACAAGAGAAACTATCGAGA+AGG | - | chr4.4:2807016-2807035 | MS.gene05937:intron | 35.0% | |
| TAGAAGGGTTGCAGATAATA+TGG | - | chr4.4:2806472-2806491 | MS.gene05937:intron | 35.0% | |
| TCCCAAACTATCTGTTGAAT+AGG | - | chr4.4:2807525-2807544 | MS.gene05937:intron | 35.0% | |
| TGAACCAACTAATTGAGAGA+GGG | + | chr4.4:2807475-2807494 | None:intergenic | 35.0% | |
| TGATAGAACCAACACTAGAT+AGG | - | chr4.4:2806780-2806799 | MS.gene05937:intron | 35.0% | |
| TGATGTCTCCAATAAAACCA+TGG | - | chr4.4:2808304-2808323 | MS.gene05937:intron | 35.0% | |
| TGCAGAAAAGATTGAGAAAC+AGG | + | chr4.4:2808018-2808037 | None:intergenic | 35.0% | |
| TTGAACCAACTAATTGAGAG+AGG | + | chr4.4:2807476-2807495 | None:intergenic | 35.0% | |
| ! | ATAGAACTGGTGGATATACT+AGG | - | chr4.4:2808628-2808647 | MS.gene05937:intron | 35.0% |
| ! | CCGTTTAGTGCTTTTACATT+TGG | - | chr4.4:2808106-2808125 | MS.gene05937:intron | 35.0% |
| ! | TAGAACTGGTGGATATACTA+GGG | - | chr4.4:2808629-2808648 | MS.gene05937:intron | 35.0% |
| ! | TGTTTACAGAACTGGCTTAT+CGG | - | chr4.4:2808513-2808532 | MS.gene05937:CDS | 35.0% |
| ! | TTATACTGATTGCCTCAGTT+CGG | - | chr4.4:2807647-2807666 | MS.gene05937:intron | 35.0% |
| ! | TTATGGATTTTCCGCTAACT+CGG | - | chr4.4:2807430-2807449 | MS.gene05937:intron | 35.0% |
| !! | AAAGATCAGGGGTTAGTTTA+TGG | - | chr4.4:2807413-2807432 | MS.gene05937:intron | 35.0% |
| !!! | ATCCATAGCCATGGTTTTAT+TGG | + | chr4.4:2808315-2808334 | None:intergenic | 35.0% |
| !!! | TGGTTTTATTGGAGACATCA+TGG | + | chr4.4:2808304-2808323 | None:intergenic | 35.0% |
| !!! | TGGTTTTGGATAGAACACTA+TGG | - | chr4.4:2807069-2807088 | MS.gene05937:intron | 35.0% |
| AAAGCATGTTAACCTGAGCA+TGG | + | chr4.4:2806200-2806219 | None:intergenic | 40.0% | |
| AAGGAGCAAGTGGAAGAAAT+AGG | + | chr4.4:2806916-2806935 | None:intergenic | 40.0% | |
| ACATCTAGAAAGAAGACCTG+TGG | - | chr4.4:2806853-2806872 | MS.gene05937:intron | 40.0% | |
| AGAAAGAAGACCTGTGGTAA+AGG | - | chr4.4:2806859-2806878 | MS.gene05937:intron | 40.0% | |
| AGTAGCCACAGTTCAGAATT+TGG | + | chr4.4:2806263-2806282 | None:intergenic | 40.0% | |
| ATATTGATGAAAGACCGCCA+GGG | - | chr4.4:2807320-2807339 | MS.gene05937:intron | 40.0% | |
| ATGTTGAGTAAATCAGTGGG+TGG | - | chr4.4:2807297-2807316 | MS.gene05937:intron | 40.0% | |
| CTCCAATAAAACCATGGCTA+TGG | - | chr4.4:2808310-2808329 | MS.gene05937:intron | 40.0% | |
| GAAACAAGACTTAGGTGGTT+TGG | - | chr4.4:2806830-2806849 | MS.gene05937:intron | 40.0% | |
| GCAGATAATATGGTACAGCT+TGG | - | chr4.4:2806482-2806501 | MS.gene05937:intron | 40.0% | |
| GTAACAAACATGCATGTGGA+AGG | + | chr4.4:2808236-2808255 | None:intergenic | 40.0% | |
| GTGTGCTCCAGTTTACTAAA+TGG | + | chr4.4:2807977-2807996 | None:intergenic | 40.0% | |
| TATGGTACAGCTTGGTAAAG+AGG | - | chr4.4:2806490-2806509 | MS.gene05937:intron | 40.0% | |
| TCACAAGCTGTTTACAGAAC+TGG | - | chr4.4:2808505-2808524 | MS.gene05937:CDS | 40.0% | |
| TCCTTCCAAATTCTGAACTG+TGG | - | chr4.4:2806255-2806274 | MS.gene05937:intron | 40.0% | |
| TGGTAGAAACAAGACTTAGG+TGG | - | chr4.4:2806825-2806844 | MS.gene05937:intron | 40.0% | |
| TTAACCTGAGCATGGATATC+CGG | + | chr4.4:2806192-2806211 | None:intergenic | 40.0% | |
| TTAGGCTAAGGAGGTTAGAA+GGG | - | chr4.4:2806457-2806476 | MS.gene05937:intron | 40.0% | |
| TTCTCCCTCTCTCAATTAGT+TGG | - | chr4.4:2807468-2807487 | MS.gene05937:intron | 40.0% | |
| TTTAGGCTAAGGAGGTTAGA+AGG | - | chr4.4:2806456-2806475 | MS.gene05937:intron | 40.0% | |
| TTTAGTAAACTGGAGCACAC+AGG | - | chr4.4:2807977-2807996 | MS.gene05937:intron | 40.0% | |
| ! | AAAAAAAGGCATGGGAGGAT+TGG | + | chr4.4:2806227-2806246 | None:intergenic | 40.0% |
| ! | AAGAAATAGGTGCTATCCAC+AGG | + | chr4.4:2806903-2806922 | None:intergenic | 40.0% |
| ! | ATGGCAACTAATGGTGGAAA+AGG | + | chr4.4:2808285-2808304 | None:intergenic | 40.0% |
| ! | CAGAGATGAGGATGTTACTT+TGG | - | chr4.4:2806737-2806756 | MS.gene05937:intron | 40.0% |
| ! | GTGGATATACTAGGGTGTTA+CGG | - | chr4.4:2808637-2808656 | MS.gene05937:intron | 40.0% |
| ! | TCTAGGTTTTCCTTTACCAC+AGG | + | chr4.4:2806872-2806891 | None:intergenic | 40.0% |
| ! | TGGCAACTAATGGTGGAAAA+GGG | + | chr4.4:2808284-2808303 | None:intergenic | 40.0% |
| !! | ACTATGTTTTAAACCCCTGG+CGG | + | chr4.4:2807337-2807356 | None:intergenic | 40.0% |
| !! | AGGATGTTACTTTGGATGTG+TGG | - | chr4.4:2806745-2806764 | MS.gene05937:intron | 40.0% |
| !! | CTGACTATGTTTTAAACCCC+TGG | + | chr4.4:2807340-2807359 | None:intergenic | 40.0% |
| !! | TCTACCTCTAGGCTTTGTTT+GGG | + | chr4.4:2806979-2806998 | None:intergenic | 40.0% |
| !!! | GAGGGTTTTGGAAAAAAGGA+AGG | + | chr4.4:2806935-2806954 | None:intergenic | 40.0% |
| AACTCCCAAACAAAGCCTAG+AGG | - | chr4.4:2806972-2806991 | MS.gene05937:intron | 45.0% | |
| AAGTCCCGCTTAAGACATGT+TGG | - | chr4.4:2806663-2806682 | MS.gene05937:intron | 45.0% | |
| ACATGTTGGGAGCAGAATGT+TGG | - | chr4.4:2806677-2806696 | MS.gene05937:intron | 45.0% | |
| AGATATGCGTAGCAGAGATG+AGG | - | chr4.4:2806725-2806744 | MS.gene05937:intron | 45.0% | |
| AGCACACAGGCTTCATAGTT+TGG | - | chr4.4:2807990-2808009 | MS.gene05937:intron | 45.0% | |
| AGTCCCGCTTAAGACATGTT+GGG | - | chr4.4:2806664-2806683 | MS.gene05937:intron | 45.0% | |
| ATGTAGCTGATCCCACTTAG+TGG | - | chr4.4:2807105-2807124 | MS.gene05937:intron | 45.0% | |
| CTAGGTCTTTCTCTACCTCT+AGG | + | chr4.4:2806990-2807009 | None:intergenic | 45.0% | |
| GACATCATGGCAACTAATGG+TGG | + | chr4.4:2808291-2808310 | None:intergenic | 45.0% | |
| GATATTGATGAAAGACCGCC+AGG | - | chr4.4:2807319-2807338 | MS.gene05937:intron | 45.0% | |
| GCCACAGTTCAGAATTTGGA+AGG | + | chr4.4:2806259-2806278 | None:intergenic | 45.0% | |
| GGAAAAAAGGAAGGAGCAAG+TGG | + | chr4.4:2806926-2806945 | None:intergenic | 45.0% | |
| GGAGACATCATGGCAACTAA+TGG | + | chr4.4:2808294-2808313 | None:intergenic | 45.0% | |
| GTGTTGTGCAGAGATAGAAC+TGG | - | chr4.4:2808615-2808634 | MS.gene05937:intron | 45.0% | |
| TATTGATGAAAGACCGCCAG+GGG | - | chr4.4:2807321-2807340 | MS.gene05937:intron | 45.0% | |
| TCGATTCAGCTTCCTGAACT+TGG | + | chr4.4:2806158-2806177 | None:intergenic | 45.0% | |
| TGAATCGAGAAACGTCTCAC+CGG | - | chr4.4:2806170-2806189 | MS.gene05937:CDS | 45.0% | |
| TGATCCCACTTAGTGGGATA+AGG | - | chr4.4:2807112-2807131 | MS.gene05937:intron | 45.0% | |
| TGCAACACTATACCGAACTG+AGG | + | chr4.4:2807662-2807681 | None:intergenic | 45.0% | |
| TGCTCCCAACATGTCTTAAG+CGG | + | chr4.4:2806671-2806690 | None:intergenic | 45.0% | |
| TGTAGCTGATCCCACTTAGT+GGG | - | chr4.4:2807106-2807125 | MS.gene05937:intron | 45.0% | |
| TTGTGCAGAGATAGAACTGG+TGG | - | chr4.4:2808618-2808637 | MS.gene05937:intron | 45.0% | |
| ! | AAATAGGTGCTATCCACAGG+TGG | + | chr4.4:2806900-2806919 | None:intergenic | 45.0% |
| ! | AATAGGTGCTATCCACAGGT+GGG | + | chr4.4:2806899-2806918 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr4.4:2807119-2807138 | None:intergenic | 45.0% |
| ! | CTTTGTTTGGGAGTTTGGAG+GGG | + | chr4.4:2806967-2806986 | None:intergenic | 45.0% |
| ! | GGTGCTATCCTATCTAGTGT+TGG | + | chr4.4:2806791-2806810 | None:intergenic | 45.0% |
| !! | CTAGGCTTTGTTTGGGAGTT+TGG | + | chr4.4:2806972-2806991 | None:intergenic | 45.0% |
| !! | CTCTACCTCTAGGCTTTGTT+TGG | + | chr4.4:2806980-2806999 | None:intergenic | 45.0% |
| !! | GCTTTGTTTGGGAGTTTGGA+GGG | + | chr4.4:2806968-2806987 | None:intergenic | 45.0% |
| !!! | AGGGGAGGGTTTTGGAAAAA+AGG | + | chr4.4:2806939-2806958 | None:intergenic | 45.0% |
| ACAGAGAGAAGCCGAGTTAG+CGG | + | chr4.4:2807444-2807463 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr4.4:2807117-2807136 | MS.gene05937:intron | 50.0% | |
| CTTAGTGGGATAAGGCTTGG+TGG | - | chr4.4:2807120-2807139 | MS.gene05937:intron | 50.0% | |
| GCTCCCAACATGTCTTAAGC+GGG | + | chr4.4:2806670-2806689 | None:intergenic | 50.0% | |
| GGGACGCAGCTTCAATCTAA+AGG | + | chr4.4:2807509-2807528 | None:intergenic | 50.0% | |
| GTTGGGAGCAGAATGTTGGA+CGG | - | chr4.4:2806681-2806700 | MS.gene05937:intron | 50.0% | |
| TAGAACCATGGTCTCGCAGT+TGG | - | chr4.4:2806298-2806317 | MS.gene05937:intron | 50.0% | |
| TTACGGACTCGCATTCGAGT+TGG | - | chr4.4:2808654-2808673 | MS.gene05937:CDS | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr4.4:2807120-2807139 | None:intergenic | 50.0% |
| !! | AGTTGGTGATGCTGCACCAA+TGG | - | chr4.4:2808671-2808690 | MS.gene05937:CDS | 50.0% |
| !! | GGCTTTGTTTGGGAGTTTGG+AGG | + | chr4.4:2806969-2806988 | None:intergenic | 50.0% |
| AACCTAGAAACGCCCACCTG+TGG | - | chr4.4:2806884-2806903 | MS.gene05937:intron | 55.0% | |
| AGCTCGCCTTGCAGCACATA+CGG | + | chr4.4:2808456-2808475 | None:intergenic | 55.0% | |
| AGGGATCCGTATGTGCTGCA+AGG | - | chr4.4:2808447-2808466 | MS.gene05937:intron | 55.0% | |
| ATCCACAGGTGGGCGTTTCT+AGG | + | chr4.4:2806889-2806908 | None:intergenic | 55.0% | |
| CTCACCGGATATCCATGCTC+AGG | - | chr4.4:2806185-2806204 | MS.gene05937:CDS | 55.0% | |
| GTTTGGGAGTTTGGAGGGGA+GGG | + | chr4.4:2806963-2806982 | None:intergenic | 55.0% | |
| TGTTTGGGAGTTTGGAGGGG+AGG | + | chr4.4:2806964-2806983 | None:intergenic | 55.0% | |
| CCTCACCAACTGCGAGACCA+TGG | + | chr4.4:2806306-2806325 | None:intergenic | 60.0% | |
| GAGTTTGGAGGGGAGGGAAG+GGG | + | chr4.4:2806957-2806976 | None:intergenic | 60.0% | |
| GGAGTTTGGAGGGGAGGGAA+GGG | + | chr4.4:2806958-2806977 | None:intergenic | 60.0% | |
| ! | CCATGGTCTCGCAGTTGGTG+AGG | - | chr4.4:2806303-2806322 | MS.gene05937:intron | 60.0% |
| ! | CGAGCTGCTAGTTTCGTGCG+AGG | - | chr4.4:2808470-2808489 | MS.gene05937:intron | 60.0% |
| GGGAGTTTGGAGGGGAGGGA+AGG | + | chr4.4:2806959-2806978 | None:intergenic | 65.0% | |
| TTGGAGGGGAGGGAAGGGGA+GGG | + | chr4.4:2806953-2806972 | None:intergenic | 65.0% | |
| TTTGGAGGGGAGGGAAGGGG+AGG | + | chr4.4:2806954-2806973 | None:intergenic | 65.0% | |
| ! | GGGAGGGAAGGGGAGGGTTT+TGG | + | chr4.4:2806947-2806966 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 2806151 | 2808703 | 2806151 | ID=MS.gene05937 |
| chr4.4 | mRNA | 2806151 | 2808703 | 2806151 | ID=MS.gene05937.t1;Parent=MS.gene05937 |
| chr4.4 | exon | 2808648 | 2808703 | 2808648 | ID=MS.gene05937.t1.exon1;Parent=MS.gene05937.t1 |
| chr4.4 | CDS | 2808648 | 2808703 | 2808648 | ID=cds.MS.gene05937.t1;Parent=MS.gene05937.t1 |
| chr4.4 | exon | 2808499 | 2808553 | 2808499 | ID=MS.gene05937.t1.exon2;Parent=MS.gene05937.t1 |
| chr4.4 | CDS | 2808499 | 2808553 | 2808499 | ID=cds.MS.gene05937.t1;Parent=MS.gene05937.t1 |
| chr4.4 | exon | 2808343 | 2808393 | 2808343 | ID=MS.gene05937.t1.exon3;Parent=MS.gene05937.t1 |
| chr4.4 | CDS | 2808343 | 2808393 | 2808343 | ID=cds.MS.gene05937.t1;Parent=MS.gene05937.t1 |
| chr4.4 | exon | 2806314 | 2806405 | 2806314 | ID=MS.gene05937.t1.exon4;Parent=MS.gene05937.t1 |
| chr4.4 | CDS | 2806314 | 2806405 | 2806314 | ID=cds.MS.gene05937.t1;Parent=MS.gene05937.t1 |
| chr4.4 | exon | 2806151 | 2806228 | 2806151 | ID=MS.gene05937.t1.exon5;Parent=MS.gene05937.t1 |
| chr4.4 | CDS | 2806151 | 2806228 | 2806151 | ID=cds.MS.gene05937.t1;Parent=MS.gene05937.t1 |
| Gene Sequence |
| Protein sequence |
