Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001446.t1 | XP_003630831.2 | 98.2 | 110 | 2 | 0 | 1 | 110 | 1 | 110 | 4.50E-51 | 210.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001446.t1 | A0L5Z9 | 56.1 | 107 | 46 | 1 | 5 | 110 | 8 | 114 | 3.9e-27 | 122.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001446.t1 | G7L907 | 98.2 | 110 | 2 | 0 | 1 | 110 | 1 | 110 | 3.3e-51 | 210.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene34167 | MS.gene001446 | PPI |
| MS.gene015732 | MS.gene001446 | PPI |
| MS.gene05937 | MS.gene001446 | PPI |
| MS.gene013330 | MS.gene001446 | PPI |
| MS.gene001446 | MS.gene005865 | PPI |
| MS.gene60861 | MS.gene001446 | PPI |
| MS.gene001446 | MS.gene04780 | PPI |
| MS.gene001687 | MS.gene001446 | PPI |
| MS.gene60589 | MS.gene001446 | PPI |
| MS.gene001444 | MS.gene001446 | PPI |
| MS.gene30981 | MS.gene001446 | PPI |
| MS.gene001446 | MS.gene028903 | PPI |
| MS.gene026968 | MS.gene001446 | PPI |
| MS.gene049140 | MS.gene001446 | PPI |
| MS.gene001446 | MS.gene82915 | PPI |
| MS.gene055808 | MS.gene001446 | PPI |
| MS.gene06427 | MS.gene001446 | PPI |
| MS.gene04780 | MS.gene001446 | PPI |
| MS.gene31468 | MS.gene001446 | PPI |
| MS.gene043435 | MS.gene001446 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001446.t1 | MTR_8g103900 | 98.182 | 110 | 2 | 0 | 1 | 110 | 1 | 110 | 9.29e-77 | 223 |
| MS.gene001446.t1 | MTR_3g095900 | 97.273 | 110 | 3 | 0 | 1 | 110 | 1 | 110 | 2.55e-76 | 222 |
| MS.gene001446.t1 | MTR_3g062930 | 43.519 | 108 | 61 | 0 | 3 | 110 | 104 | 211 | 2.67e-27 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene001446.t1 | AT5G09770 | 85.455 | 110 | 16 | 0 | 1 | 110 | 1 | 110 | 2.29e-67 | 200 |
| MS.gene001446.t1 | AT5G64650 | 85.455 | 110 | 16 | 0 | 1 | 110 | 1 | 110 | 3.36e-67 | 199 |
| MS.gene001446.t1 | AT3G54210 | 44.762 | 105 | 58 | 0 | 6 | 110 | 104 | 208 | 1.43e-27 | 100 |
Find 30 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAGGCTAAGGAGGTTAGA+AGG | 0.294585 | 4.1:+2477957 | MS.gene001446:intron |
| TAGAAGGGTTGCAGATAATA+TGG | 0.357326 | 4.1:+2477973 | MS.gene001446:CDS |
| TGTTTACAGAACTGGCTTAT+CGG | 0.376930 | 4.1:+2480015 | MS.gene001446:CDS |
| TCACAAGCTGTTTACAGAAC+TGG | 0.397878 | 4.1:+2480007 | MS.gene001446:CDS |
| TCGATTCAGCTTCCTGAACT+TGG | 0.412475 | 4.1:-2477655 | None:intergenic |
| CTGAGAAAATGACCAAGTTC+AGG | 0.415630 | 4.1:+2477643 | None:intergenic |
| ATAGAACTGGTGGATATACT+AGG | 0.438895 | 4.1:+2480130 | MS.gene001446:CDS |
| TTAGGCTAAGGAGGTTAGAA+GGG | 0.463555 | 4.1:+2477958 | MS.gene001446:intron |
| AGCTCGCCTTGCAGCACATA+CGG | 0.485413 | 4.1:-2479955 | None:intergenic |
| TTAACCTGAGCATGGATATC+CGG | 0.493435 | 4.1:-2477689 | None:intergenic |
| AACAGAGATTTACTCAATAT+AGG | 0.495924 | 4.1:-2480196 | None:intergenic |
| GTGGATATACTAGGGTGTTA+CGG | 0.513509 | 4.1:+2480139 | MS.gene001446:CDS |
| TATGGTACAGCTTGGTAAAG+AGG | 0.517654 | 4.1:+2477991 | MS.gene001446:CDS |
| TAGAACCATGGTCTCGCAGT+TGG | 0.542039 | 4.1:+2477799 | MS.gene001446:intron |
| TGAATCGAGAAACGTCTCAC+CGG | 0.546451 | 4.1:+2477670 | MS.gene001446:CDS |
| TTGTTATTTATTTAGAACCA+TGG | 0.549464 | 4.1:+2477787 | MS.gene001446:intron |
| ATTTACTCAATATAGGCCAT+TGG | 0.558368 | 4.1:-2480189 | None:intergenic |
| TTACGGACTCGCATTCGAGT+TGG | 0.558431 | 4.1:+2480156 | MS.gene001446:CDS |
| CTCACCGGATATCCATGCTC+AGG | 0.569855 | 4.1:+2477685 | MS.gene001446:CDS |
| AGTTGGTGATGCTGCACCAA+TGG | 0.577706 | 4.1:+2480173 | MS.gene001446:CDS |
| CCATGGTCTCGCAGTTGGTG+AGG | 0.580724 | 4.1:+2477804 | MS.gene001446:CDS |
| CATTGAAACTACTATTACCA+AGG | 0.585744 | 4.1:+2477835 | MS.gene001446:CDS |
| GCAGATAATATGGTACAGCT+TGG | 0.590005 | 4.1:+2477983 | MS.gene001446:CDS |
| CCTCACCAACTGCGAGACCA+TGG | 0.601685 | 4.1:-2477804 | None:intergenic |
| TAGAACTGGTGGATATACTA+GGG | 0.605628 | 4.1:+2480131 | MS.gene001446:CDS |
| AAAGCATGTTAACCTGAGCA+TGG | 0.605726 | 4.1:-2477697 | None:intergenic |
| AGGGATCCGTATGTGCTGCA+AGG | 0.620707 | 4.1:+2479949 | MS.gene001446:intron |
| GTGTTGTGCAGAGATAGAAC+TGG | 0.623312 | 4.1:+2480117 | MS.gene001446:intron |
| TTGTGCAGAGATAGAACTGG+TGG | 0.666108 | 4.1:+2480120 | MS.gene001446:intron |
| CGAGCTGCTAGTTTCGTGCG+AGG | 0.670232 | 4.1:+2479972 | MS.gene001446:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGGTTTAAAAAATATATATT+GGG | - | chr4.1:2478117-2478136 | None:intergenic | 10.0% |
| !!! | AAATTTAATTTATATTACCT+TGG | - | chr4.1:2477855-2477874 | None:intergenic | 10.0% |
| !! | AAGGAAGAAAAAAAAAAAAT+AGG | - | chr4.1:2477741-2477760 | None:intergenic | 15.0% |
| !! | CTGGTTTAAAAAATATATAT+TGG | - | chr4.1:2478118-2478137 | None:intergenic | 15.0% |
| !! | AACAAAAGTAGAGAAAAATA+AGG | - | chr4.1:2479283-2479302 | None:intergenic | 20.0% |
| !! | AATGCTTGAAATATAAAGAA+TGG | + | chr4.1:2479384-2479403 | MS.gene001446:intron | 20.0% |
| !! | AGAAAAAAAAAAAATAGGCA+TGG | - | chr4.1:2477736-2477755 | None:intergenic | 20.0% |
| !! | ATATTATAACTACTAATCAG+CGG | + | chr4.1:2478878-2478897 | MS.gene001446:intron | 20.0% |
| !! | GAAAAAAAAAAAATAGGCAT+GGG | - | chr4.1:2477735-2477754 | None:intergenic | 20.0% |
| !! | GAATTTAAATTAAAGTTTGC+TGG | + | chr4.1:2477921-2477940 | MS.gene001446:intron | 20.0% |
| !! | TAATGAACTGGATAAAAATA+TGG | + | chr4.1:2478549-2478568 | MS.gene001446:intron | 20.0% |
| !!! | ATTTTTCTCTACTTTTGTTT+TGG | + | chr4.1:2479284-2479303 | MS.gene001446:intron | 20.0% |
| !!! | TTGTTATTTATTTAGAACCA+TGG | + | chr4.1:2477787-2477806 | MS.gene001446:intron | 20.0% |
| ! | AAAGTAGAGAAAAATAAGGA+AGG | - | chr4.1:2479279-2479298 | None:intergenic | 25.0% |
| ! | AACATATAACACTTGAATAC+TGG | - | chr4.1:2478137-2478156 | None:intergenic | 25.0% |
| ! | AAGAACAATTAACTTAATGC+AGG | + | chr4.1:2479426-2479445 | MS.gene001446:intron | 25.0% |
| ! | AATATATATTGGGTGATCAA+TGG | - | chr4.1:2478107-2478126 | None:intergenic | 25.0% |
| ! | AGAACAATTAACTTAATGCA+GGG | + | chr4.1:2479427-2479446 | MS.gene001446:intron | 25.0% |
| ! | AGTTTACACGATAAATTGTT+AGG | + | chr4.1:2479929-2479948 | MS.gene001446:intron | 25.0% |
| ! | ATAAAAAATATCCATAGCCA+TGG | - | chr4.1:2479825-2479844 | None:intergenic | 25.0% |
| ! | ATAAATGTTGAGTAAATCAG+TGG | + | chr4.1:2478794-2478813 | MS.gene001446:intron | 25.0% |
| ! | ATCTTGAGCATAAATTTGAT+AGG | + | chr4.1:2479854-2479873 | MS.gene001446:intron | 25.0% |
| ! | GTTTACACGATAAATTGTTA+GGG | + | chr4.1:2479930-2479949 | MS.gene001446:intron | 25.0% |
| ! | TAAATGTTGAGTAAATCAGT+GGG | + | chr4.1:2478795-2478814 | MS.gene001446:intron | 25.0% |
| ! | TATTATAACTACTAATCAGC+GGG | + | chr4.1:2478879-2478898 | MS.gene001446:intron | 25.0% |
| ! | TTAAAAGAAAGCAGTTATGT+AGG | - | chr4.1:2479542-2479561 | None:intergenic | 25.0% |
| ! | TTAAGATCCATTTAGTAAAC+TGG | + | chr4.1:2479468-2479487 | MS.gene001446:intron | 25.0% |
| ! | TTACTCAACATTTATCTTCA+GGG | - | chr4.1:2478789-2478808 | None:intergenic | 25.0% |
| ! | TTTACTCAACATTTATCTTC+AGG | - | chr4.1:2478790-2478809 | None:intergenic | 25.0% |
| !! | AATTTGATCCTATGCATTTT+CGG | + | chr4.1:2477870-2477889 | MS.gene001446:intron | 25.0% |
| !! | ACTGGATAAAAATATGGTTT+TGG | + | chr4.1:2478555-2478574 | MS.gene001446:intron | 25.0% |
| !! | AGTAGTTGATATTTGTTTGT+TGG | + | chr4.1:2479327-2479346 | MS.gene001446:intron | 25.0% |
| !! | GTTTAAGTTCAAAAAGTAAG+AGG | + | chr4.1:2478748-2478767 | MS.gene001446:intron | 25.0% |
| !! | TATTGATAGTAGCATATTAG+AGG | - | chr4.1:2479240-2479259 | None:intergenic | 25.0% |
| !!! | CAAACAATATTTTTTCAACC+TGG | + | chr4.1:2478726-2478745 | MS.gene001446:intron | 25.0% |
| !!! | CTGGTTGTAATTTTGATTTT+AGG | + | chr4.1:2477940-2477959 | MS.gene001446:intron | 25.0% |
| !!! | GTAATTTTGATTTTAGGCTA+AGG | + | chr4.1:2477946-2477965 | MS.gene001446:intron | 25.0% |
| !!! | TGGTTGTTTGATTACTTTTA+GGG | + | chr4.1:2479304-2479323 | MS.gene001446:intron | 25.0% |
| !!! | TTACTTTTTGAACTTAAACC+AGG | - | chr4.1:2478747-2478766 | None:intergenic | 25.0% |
| !!! | TTGGTTGTTTGATTACTTTT+AGG | + | chr4.1:2479303-2479322 | MS.gene001446:intron | 25.0% |
| AAAAAAAAAATAGGCATGGG+AGG | - | chr4.1:2477732-2477751 | None:intergenic | 30.0% | |
| ACGGAAATAAAACACAAATG+AGG | - | chr4.1:2479591-2479610 | None:intergenic | 30.0% | |
| ATATCATAGCACAAGTAAGA+CGG | - | chr4.1:2478050-2478069 | None:intergenic | 30.0% | |
| CAAATTTATGCTCAAGATCA+AGG | - | chr4.1:2479852-2479871 | None:intergenic | 30.0% | |
| CATTGAAACTACTATTACCA+AGG | + | chr4.1:2477835-2477854 | MS.gene001446:CDS | 30.0% | |
| GTAAGAGGTTTGAAAAATGT+CGG | + | chr4.1:2478763-2478782 | MS.gene001446:intron | 30.0% | |
| TCCTATTCAACAGATAGTTT+GGG | - | chr4.1:2479030-2479049 | None:intergenic | 30.0% | |
| TGAATACTGATGAAAGATCA+GGG | + | chr4.1:2478902-2478921 | MS.gene001446:intron | 30.0% | |
| TTCTTAAACCGAAAATGCAT+AGG | - | chr4.1:2477881-2477900 | None:intergenic | 30.0% | |
| ! | AACTTTTGCAGAACAGATTT+TGG | - | chr4.1:2479053-2479072 | None:intergenic | 30.0% |
| ! | ATTTATCTAGCTTGACTACT+TGG | + | chr4.1:2479895-2479914 | MS.gene001446:intron | 30.0% |
| ! | CGTTTAGTGCTTTTACATTT+GGG | + | chr4.1:2479608-2479627 | MS.gene001446:intron | 30.0% |
| ! | GTTTCTCTTGTAGTTTTTCT+AGG | - | chr4.1:2478508-2478527 | None:intergenic | 30.0% |
| ! | TCTACCATCTTTTCTACAAT+AGG | - | chr4.1:2478312-2478331 | None:intergenic | 30.0% |
| !! | CCAAATGTAAAAGCACTAAA+CGG | - | chr4.1:2479610-2479629 | None:intergenic | 30.0% |
| !!! | ATTTTGATTTTAGGCTAAGG+AGG | + | chr4.1:2477949-2477968 | MS.gene001446:intron | 30.0% |
| AACTGAGGCAATCAGTATAA+TGG | - | chr4.1:2479148-2479167 | None:intergenic | 35.0% | |
| AACTGTAACAAACATGCATG+TGG | - | chr4.1:2479741-2479760 | None:intergenic | 35.0% | |
| AATATAAAGAATGGCGACAC+TGG | + | chr4.1:2479393-2479412 | MS.gene001446:intron | 35.0% | |
| AGATGGTAGAAACAAGACTT+AGG | + | chr4.1:2478322-2478341 | MS.gene001446:intron | 35.0% | |
| AGCACCTATTGTAGAAAAGA+TGG | + | chr4.1:2478305-2478324 | MS.gene001446:intron | 35.0% | |
| CGCATATCTTATTCTTGTGT+TGG | - | chr4.1:2478214-2478233 | None:intergenic | 35.0% | |
| CTTAAGTTAACGTTCTAACG+TGG | + | chr4.1:2479350-2479369 | MS.gene001446:intron | 35.0% | |
| GAATACTGATGAAAGATCAG+GGG | + | chr4.1:2478903-2478922 | MS.gene001446:intron | 35.0% | |
| GATCAATGGTAAAGAATGAG+AGG | - | chr4.1:2478093-2478112 | None:intergenic | 35.0% | |
| GGATCTAGAGATTAATGAAC+TGG | + | chr4.1:2478537-2478556 | MS.gene001446:intron | 35.0% | |
| GTCCTATTCAACAGATAGTT+TGG | - | chr4.1:2479031-2479050 | None:intergenic | 35.0% | |
| GTGAATACTGATGAAAGATC+AGG | + | chr4.1:2478901-2478920 | MS.gene001446:intron | 35.0% | |
| TACAAGAGAAACTATCGAGA+AGG | + | chr4.1:2478516-2478535 | MS.gene001446:intron | 35.0% | |
| TAGAAGGGTTGCAGATAATA+TGG | + | chr4.1:2477973-2477992 | MS.gene001446:CDS | 35.0% | |
| TCCCAAACTATCTGTTGAAT+AGG | + | chr4.1:2479026-2479045 | MS.gene001446:intron | 35.0% | |
| TGAACCAACTAATTGAGAGA+GGG | - | chr4.1:2478976-2478995 | None:intergenic | 35.0% | |
| TGATAGAACCAACACTAGAT+AGG | + | chr4.1:2478280-2478299 | MS.gene001446:intron | 35.0% | |
| TGATGTCTCCAATAAAACCA+TGG | + | chr4.1:2479805-2479824 | MS.gene001446:intron | 35.0% | |
| TGCAGAAAAGATTGAGAAAC+AGG | - | chr4.1:2479519-2479538 | None:intergenic | 35.0% | |
| TTGAACCAACTAATTGAGAG+AGG | - | chr4.1:2478977-2478996 | None:intergenic | 35.0% | |
| ! | ATAGAACTGGTGGATATACT+AGG | + | chr4.1:2480130-2480149 | MS.gene001446:CDS | 35.0% |
| ! | CCGTTTAGTGCTTTTACATT+TGG | + | chr4.1:2479607-2479626 | MS.gene001446:intron | 35.0% |
| ! | TAGAACTGGTGGATATACTA+GGG | + | chr4.1:2480131-2480150 | MS.gene001446:CDS | 35.0% |
| ! | TGTTTACAGAACTGGCTTAT+CGG | + | chr4.1:2480015-2480034 | MS.gene001446:CDS | 35.0% |
| ! | TTATACTGATTGCCTCAGTT+CGG | + | chr4.1:2479148-2479167 | MS.gene001446:intron | 35.0% |
| ! | TTATGGATTTTCCGCTAACT+CGG | + | chr4.1:2478931-2478950 | MS.gene001446:intron | 35.0% |
| !! | AAAGATCAGGGGTTAGTTTA+TGG | + | chr4.1:2478914-2478933 | MS.gene001446:intron | 35.0% |
| !!! | ATCCATAGCCATGGTTTTAT+TGG | - | chr4.1:2479816-2479835 | None:intergenic | 35.0% |
| !!! | GGTTTTGGAATAGAACACTA+TGG | + | chr4.1:2478570-2478589 | MS.gene001446:intron | 35.0% |
| !!! | TGGTTTTATTGGAGACATCA+TGG | - | chr4.1:2479805-2479824 | None:intergenic | 35.0% |
| AAAAATAGGCATGGGAGGAT+TGG | - | chr4.1:2477727-2477746 | None:intergenic | 40.0% | |
| AAAGCATGTTAACCTGAGCA+TGG | - | chr4.1:2477700-2477719 | None:intergenic | 40.0% | |
| AAGGAGCAAGTGGAAGAAAT+AGG | - | chr4.1:2478416-2478435 | None:intergenic | 40.0% | |
| ACATCTAGAAAGAAGACCTG+TGG | + | chr4.1:2478353-2478372 | MS.gene001446:intron | 40.0% | |
| AGAAAGAAGACCTGTGGTAA+AGG | + | chr4.1:2478359-2478378 | MS.gene001446:intron | 40.0% | |
| AGTAGCCACAGTTCAGAATT+TGG | - | chr4.1:2477764-2477783 | None:intergenic | 40.0% | |
| ATATTGATGAAAGACCGCCA+GGG | + | chr4.1:2478821-2478840 | MS.gene001446:intron | 40.0% | |
| ATGTTGAGTAAATCAGTGGG+TGG | + | chr4.1:2478798-2478817 | MS.gene001446:intron | 40.0% | |
| CTCCAATAAAACCATGGCTA+TGG | + | chr4.1:2479811-2479830 | MS.gene001446:intron | 40.0% | |
| GAAACAAGACTTAGGTGGTT+TGG | + | chr4.1:2478330-2478349 | MS.gene001446:intron | 40.0% | |
| GCAGATAATATGGTACAGCT+TGG | + | chr4.1:2477983-2478002 | MS.gene001446:CDS | 40.0% | |
| GTAACAAACATGCATGTGGA+AGG | - | chr4.1:2479737-2479756 | None:intergenic | 40.0% | |
| GTGTGCTCCAGTTTACTAAA+TGG | - | chr4.1:2479478-2479497 | None:intergenic | 40.0% | |
| TATGGTACAGCTTGGTAAAG+AGG | + | chr4.1:2477991-2478010 | MS.gene001446:CDS | 40.0% | |
| TCACAAGCTGTTTACAGAAC+TGG | + | chr4.1:2480007-2480026 | MS.gene001446:CDS | 40.0% | |
| TCCTTCCAAATTCTGAACTG+TGG | + | chr4.1:2477756-2477775 | MS.gene001446:intron | 40.0% | |
| TGGTAGAAACAAGACTTAGG+TGG | + | chr4.1:2478325-2478344 | MS.gene001446:intron | 40.0% | |
| TTAACCTGAGCATGGATATC+CGG | - | chr4.1:2477692-2477711 | None:intergenic | 40.0% | |
| TTAGGCTAAGGAGGTTAGAA+GGG | + | chr4.1:2477958-2477977 | MS.gene001446:intron | 40.0% | |
| TTCTCCCTCTCTCAATTAGT+TGG | + | chr4.1:2478969-2478988 | MS.gene001446:intron | 40.0% | |
| TTTAGGCTAAGGAGGTTAGA+AGG | + | chr4.1:2477957-2477976 | MS.gene001446:intron | 40.0% | |
| TTTAGTAAACTGGAGCACAC+AGG | + | chr4.1:2479478-2479497 | MS.gene001446:intron | 40.0% | |
| ! | AAGAAATAGGTGCTATCCAC+AGG | - | chr4.1:2478403-2478422 | None:intergenic | 40.0% |
| ! | ATGGCAACTAATGGTGGAAA+AGG | - | chr4.1:2479786-2479805 | None:intergenic | 40.0% |
| ! | CAGAGATGAGGATGTTACTT+TGG | + | chr4.1:2478237-2478256 | MS.gene001446:intron | 40.0% |
| ! | GTGGATATACTAGGGTGTTA+CGG | + | chr4.1:2480139-2480158 | MS.gene001446:CDS | 40.0% |
| ! | TCTAGGTTTTCCTTTACCAC+AGG | - | chr4.1:2478372-2478391 | None:intergenic | 40.0% |
| ! | TGGCAACTAATGGTGGAAAA+GGG | - | chr4.1:2479785-2479804 | None:intergenic | 40.0% |
| !! | ACTATGTTTTAAACCCCTGG+CGG | - | chr4.1:2478838-2478857 | None:intergenic | 40.0% |
| !! | AGGATGTTACTTTGGATGTG+TGG | + | chr4.1:2478245-2478264 | MS.gene001446:intron | 40.0% |
| !! | CTGACTATGTTTTAAACCCC+TGG | - | chr4.1:2478841-2478860 | None:intergenic | 40.0% |
| !! | TCTACCTCTAGGCTTTGTTT+GGG | - | chr4.1:2478479-2478498 | None:intergenic | 40.0% |
| !!! | GAGGGTTTTGGAAAAAAGGA+AGG | - | chr4.1:2478435-2478454 | None:intergenic | 40.0% |
| AACTCCCAAACAAAGCCTAG+AGG | + | chr4.1:2478472-2478491 | MS.gene001446:intron | 45.0% | |
| AAGTCCCGCTTAAGACATGT+TGG | + | chr4.1:2478163-2478182 | MS.gene001446:intron | 45.0% | |
| ACATGTTGGGAGCAGAATGT+TGG | + | chr4.1:2478177-2478196 | MS.gene001446:intron | 45.0% | |
| AGATATGCGTAGCAGAGATG+AGG | + | chr4.1:2478225-2478244 | MS.gene001446:intron | 45.0% | |
| AGCACACAGGCTTCATAGTT+TGG | + | chr4.1:2479491-2479510 | MS.gene001446:intron | 45.0% | |
| AGTCCCGCTTAAGACATGTT+GGG | + | chr4.1:2478164-2478183 | MS.gene001446:intron | 45.0% | |
| ATGTAGCTGATCCCACTTAG+TGG | + | chr4.1:2478606-2478625 | MS.gene001446:intron | 45.0% | |
| CTAGGTCTTTCTCTACCTCT+AGG | - | chr4.1:2478490-2478509 | None:intergenic | 45.0% | |
| GACATCATGGCAACTAATGG+TGG | - | chr4.1:2479792-2479811 | None:intergenic | 45.0% | |
| GATATTGATGAAAGACCGCC+AGG | + | chr4.1:2478820-2478839 | MS.gene001446:intron | 45.0% | |
| GCCACAGTTCAGAATTTGGA+AGG | - | chr4.1:2477760-2477779 | None:intergenic | 45.0% | |
| GGAAAAAAGGAAGGAGCAAG+TGG | - | chr4.1:2478426-2478445 | None:intergenic | 45.0% | |
| GGAGACATCATGGCAACTAA+TGG | - | chr4.1:2479795-2479814 | None:intergenic | 45.0% | |
| GTGTTGTGCAGAGATAGAAC+TGG | + | chr4.1:2480117-2480136 | MS.gene001446:intron | 45.0% | |
| TATTGATGAAAGACCGCCAG+GGG | + | chr4.1:2478822-2478841 | MS.gene001446:intron | 45.0% | |
| TCGATTCAGCTTCCTGAACT+TGG | - | chr4.1:2477658-2477677 | None:intergenic | 45.0% | |
| TGAATCGAGAAACGTCTCAC+CGG | + | chr4.1:2477670-2477689 | MS.gene001446:CDS | 45.0% | |
| TGATCCCACTTAGTGGGATA+AGG | + | chr4.1:2478613-2478632 | MS.gene001446:intron | 45.0% | |
| TGCAACACTATACCGAACTG+AGG | - | chr4.1:2479163-2479182 | None:intergenic | 45.0% | |
| TGCTCCCAACATGTCTTAAG+CGG | - | chr4.1:2478171-2478190 | None:intergenic | 45.0% | |
| TGTAGCTGATCCCACTTAGT+GGG | + | chr4.1:2478607-2478626 | MS.gene001446:intron | 45.0% | |
| TTGTGCAGAGATAGAACTGG+TGG | + | chr4.1:2480120-2480139 | MS.gene001446:intron | 45.0% | |
| ! | AAATAGGTGCTATCCACAGG+TGG | - | chr4.1:2478400-2478419 | None:intergenic | 45.0% |
| ! | AATAGGTGCTATCCACAGGT+GGG | - | chr4.1:2478399-2478418 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr4.1:2478620-2478639 | None:intergenic | 45.0% |
| ! | CTTTGTTTGGGAGTTTGGAG+GGG | - | chr4.1:2478467-2478486 | None:intergenic | 45.0% |
| ! | GGTGCTATCCTATCTAGTGT+TGG | - | chr4.1:2478291-2478310 | None:intergenic | 45.0% |
| !! | CTAGGCTTTGTTTGGGAGTT+TGG | - | chr4.1:2478472-2478491 | None:intergenic | 45.0% |
| !! | CTCTACCTCTAGGCTTTGTT+TGG | - | chr4.1:2478480-2478499 | None:intergenic | 45.0% |
| !! | GCTTTGTTTGGGAGTTTGGA+GGG | - | chr4.1:2478468-2478487 | None:intergenic | 45.0% |
| !!! | AGGGGAGGGTTTTGGAAAAA+AGG | - | chr4.1:2478439-2478458 | None:intergenic | 45.0% |
| ACAGAGAGAAGCCGAGTTAG+CGG | - | chr4.1:2478945-2478964 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr4.1:2478618-2478637 | MS.gene001446:intron | 50.0% | |
| CTTAGTGGGATAAGGCTTGG+TGG | + | chr4.1:2478621-2478640 | MS.gene001446:intron | 50.0% | |
| GCTCCCAACATGTCTTAAGC+GGG | - | chr4.1:2478170-2478189 | None:intergenic | 50.0% | |
| GGGACGCAGCTTCAATCTAA+AGG | - | chr4.1:2479010-2479029 | None:intergenic | 50.0% | |
| GTTGGGAGCAGAATGTTGGA+CGG | + | chr4.1:2478181-2478200 | MS.gene001446:intron | 50.0% | |
| TAGAACCATGGTCTCGCAGT+TGG | + | chr4.1:2477799-2477818 | MS.gene001446:intron | 50.0% | |
| TTACGGACTCGCATTCGAGT+TGG | + | chr4.1:2480156-2480175 | MS.gene001446:CDS | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr4.1:2478621-2478640 | None:intergenic | 50.0% |
| !! | AGTTGGTGATGCTGCACCAA+TGG | + | chr4.1:2480173-2480192 | MS.gene001446:CDS | 50.0% |
| !! | GGCTTTGTTTGGGAGTTTGG+AGG | - | chr4.1:2478469-2478488 | None:intergenic | 50.0% |
| AACCTAGAAACGCCCACCTG+TGG | + | chr4.1:2478384-2478403 | MS.gene001446:intron | 55.0% | |
| AGCTCGCCTTGCAGCACATA+CGG | - | chr4.1:2479958-2479977 | None:intergenic | 55.0% | |
| AGGGATCCGTATGTGCTGCA+AGG | + | chr4.1:2479949-2479968 | MS.gene001446:intron | 55.0% | |
| ATCCACAGGTGGGCGTTTCT+AGG | - | chr4.1:2478389-2478408 | None:intergenic | 55.0% | |
| CTCACCGGATATCCATGCTC+AGG | + | chr4.1:2477685-2477704 | MS.gene001446:CDS | 55.0% | |
| GTTTGGGAGTTTGGAGGGGA+GGG | - | chr4.1:2478463-2478482 | None:intergenic | 55.0% | |
| TGTTTGGGAGTTTGGAGGGG+AGG | - | chr4.1:2478464-2478483 | None:intergenic | 55.0% | |
| CCTCACCAACTGCGAGACCA+TGG | - | chr4.1:2477807-2477826 | None:intergenic | 60.0% | |
| GAGTTTGGAGGGGAGGGAAG+GGG | - | chr4.1:2478457-2478476 | None:intergenic | 60.0% | |
| GGAGTTTGGAGGGGAGGGAA+GGG | - | chr4.1:2478458-2478477 | None:intergenic | 60.0% | |
| ! | CCATGGTCTCGCAGTTGGTG+AGG | + | chr4.1:2477804-2477823 | MS.gene001446:CDS | 60.0% |
| ! | CGAGCTGCTAGTTTCGTGCG+AGG | + | chr4.1:2479972-2479991 | MS.gene001446:CDS | 60.0% |
| GGGAGTTTGGAGGGGAGGGA+AGG | - | chr4.1:2478459-2478478 | None:intergenic | 65.0% | |
| TTGGAGGGGAGGGAAGGGGA+GGG | - | chr4.1:2478453-2478472 | None:intergenic | 65.0% | |
| TTTGGAGGGGAGGGAAGGGG+AGG | - | chr4.1:2478454-2478473 | None:intergenic | 65.0% | |
| ! | GGGAGGGAAGGGGAGGGTTT+TGG | - | chr4.1:2478447-2478466 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 2477651 | 2480205 | 2477651 | ID=MS.gene001446 |
| chr4.1 | mRNA | 2477651 | 2480205 | 2477651 | ID=MS.gene001446.t1;Parent=MS.gene001446 |
| chr4.1 | exon | 2477651 | 2477706 | 2477651 | ID=MS.gene001446.t1.exon1;Parent=MS.gene001446.t1 |
| chr4.1 | CDS | 2477651 | 2477706 | 2477651 | ID=cds.MS.gene001446.t1;Parent=MS.gene001446.t1 |
| chr4.1 | exon | 2477802 | 2477856 | 2477802 | ID=MS.gene001446.t1.exon2;Parent=MS.gene001446.t1 |
| chr4.1 | CDS | 2477802 | 2477856 | 2477802 | ID=cds.MS.gene001446.t1;Parent=MS.gene001446.t1 |
| chr4.1 | exon | 2477962 | 2478012 | 2477962 | ID=MS.gene001446.t1.exon3;Parent=MS.gene001446.t1 |
| chr4.1 | CDS | 2477962 | 2478012 | 2477962 | ID=cds.MS.gene001446.t1;Parent=MS.gene001446.t1 |
| chr4.1 | exon | 2479951 | 2480042 | 2479951 | ID=MS.gene001446.t1.exon4;Parent=MS.gene001446.t1 |
| chr4.1 | CDS | 2479951 | 2480042 | 2479951 | ID=cds.MS.gene001446.t1;Parent=MS.gene001446.t1 |
| chr4.1 | exon | 2480128 | 2480205 | 2480128 | ID=MS.gene001446.t1.exon5;Parent=MS.gene001446.t1 |
| chr4.1 | CDS | 2480128 | 2480205 | 2480128 | ID=cds.MS.gene001446.t1;Parent=MS.gene001446.t1 |
| Gene Sequence |
| Protein sequence |
