Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013330.t1 | XP_003602582.1 | 99.1 | 111 | 1 | 0 | 1 | 111 | 1 | 111 | 7.00E-52 | 213 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013330.t1 | A0L5Z9 | 56.5 | 108 | 46 | 1 | 5 | 111 | 8 | 115 | 4.7e-28 | 125.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013330.t1 | G7JBH3 | 99.1 | 111 | 1 | 0 | 1 | 111 | 1 | 111 | 5.1e-52 | 213.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene013330 | MS.gene001687 | PPI |
| MS.gene013330 | MS.gene005865 | PPI |
| MS.gene013330 | MS.gene001446 | PPI |
| MS.gene013330 | MS.gene026968 | PPI |
| MS.gene013330 | MS.gene60861 | PPI |
| MS.gene013330 | MS.gene001444 | PPI |
| MS.gene013330 | MS.gene028903 | PPI |
| MS.gene013330 | MS.gene04780 | PPI |
| MS.gene013330 | MS.gene015732 | PPI |
| MS.gene013330 | MS.gene60589 | PPI |
| MS.gene013330 | MS.gene049140 | PPI |
| MS.gene31468 | MS.gene013330 | PPI |
| MS.gene013330 | MS.gene05937 | PPI |
| MS.gene013330 | MS.gene055808 | PPI |
| MS.gene34167 | MS.gene013330 | PPI |
| MS.gene013330 | MS.gene06427 | PPI |
| MS.gene013330 | MS.gene30981 | PPI |
| MS.gene013330 | MS.gene82915 | PPI |
| MS.gene013330 | MS.gene043435 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013330.t1 | MTR_3g095900 | 99.099 | 111 | 1 | 0 | 1 | 111 | 1 | 111 | 1.49e-77 | 226 |
| MS.gene013330.t1 | MTR_8g103900 | 94.595 | 111 | 6 | 0 | 1 | 111 | 1 | 111 | 5.42e-75 | 219 |
| MS.gene013330.t1 | MTR_3g062930 | 44.037 | 109 | 61 | 0 | 3 | 111 | 104 | 212 | 2.03e-28 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene013330.t1 | AT5G09770 | 85.586 | 111 | 16 | 0 | 1 | 111 | 1 | 111 | 7.14e-68 | 201 |
| MS.gene013330.t1 | AT5G64650 | 85.586 | 111 | 16 | 0 | 1 | 111 | 1 | 111 | 1.46e-67 | 200 |
| MS.gene013330.t1 | AT3G54210 | 44.037 | 109 | 61 | 0 | 3 | 111 | 101 | 209 | 1.48e-28 | 103 |
Find 27 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGAAGGCTTGCGGATAATA+TGG | 0.358643 | 3.4:+86976175 | MS.gene013330:CDS |
| TTTAGGCTAAGGAGGTTAGA+AGG | 0.388038 | 3.4:+86976159 | MS.gene013330:intron |
| TCACAAGCTGTTTACAGAAC+TGG | 0.397878 | 3.4:+86978864 | MS.gene013330:CDS |
| TAGAACCATGGTCTCGCAAT+TGG | 0.405067 | 3.4:+86976010 | MS.gene013330:intron |
| AAGAGAGATTTACTCAATAT+AGG | 0.440103 | 3.4:-86979054 | None:intergenic |
| TTAACCTGAGCATGGATAAC+CGG | 0.473739 | 3.4:-86975896 | None:intergenic |
| AGCACGCCTTGCAGCACATA+CGG | 0.513486 | 3.4:-86978812 | None:intergenic |
| TATGGTACAGCTTGGTAAAG+AGG | 0.517654 | 3.4:+86976193 | MS.gene013330:CDS |
| CTGCCAAAATGACAAAGCTC+AGG | 0.541799 | 3.4:+86975850 | None:intergenic |
| ATTTACTCAATATAGGCCAT+TGG | 0.558368 | 3.4:-86979047 | None:intergenic |
| CTCACCGGTTATCCATGCTC+AGG | 0.565167 | 3.4:+86975892 | MS.gene013330:CDS |
| AGTTGGTGATGCTGCACCAA+TGG | 0.577706 | 3.4:+86979031 | MS.gene013330:CDS |
| GCGGATAATATGGTACAGCT+TGG | 0.582534 | 3.4:+86976185 | MS.gene013330:CDS |
| GTGGATACACTAGGGTGCTA+CGG | 0.583066 | 3.4:+86978997 | MS.gene013330:CDS |
| CATTGAAACTACTATTACCA+AGG | 0.585744 | 3.4:+86976046 | MS.gene013330:CDS |
| ATCGAACTGGTGGATACACT+AGG | 0.599188 | 3.4:+86978988 | MS.gene013330:CDS |
| CTACGGACTCGCATTCGAGT+TGG | 0.599565 | 3.4:+86979014 | MS.gene013330:CDS |
| GTGTTGTGCAGGGATCGAAC+TGG | 0.602705 | 3.4:+86978975 | MS.gene013330:intron |
| AGGGATCCGTATGTGCTGCA+AGG | 0.603781 | 3.4:+86978806 | MS.gene013330:intron |
| AAAGCATGTTAACCTGAGCA+TGG | 0.605726 | 3.4:-86975904 | None:intergenic |
| CCTCACCAATTGCGAGACCA+TGG | 0.612029 | 3.4:-86976015 | None:intergenic |
| CCATGGTCTCGCAATTGGTG+AGG | 0.620210 | 3.4:+86976015 | MS.gene013330:CDS |
| TTGTGCAGGGATCGAACTGG+TGG | 0.637626 | 3.4:+86978978 | MS.gene013330:intron |
| TAAGGAGGTTAGAAGGCTTG+CGG | 0.643881 | 3.4:+86976166 | MS.gene013330:CDS |
| TCAATCGAGATACGTCTCAC+CGG | 0.647896 | 3.4:+86975877 | MS.gene013330:CDS |
| TCGAACTGGTGGATACACTA+GGG | 0.666236 | 3.4:+86978989 | MS.gene013330:CDS |
| CGTGCTGCTAGTTTCGTGCG+AGG | 0.668394 | 3.4:+86978829 | MS.gene013330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATAAATTTTAATTTTTTT+GGG | - | chr3.4:86978081-86978100 | None:intergenic | 0.0% |
| !!! | TTTATAAATTTTAATTTTTT+TGG | - | chr3.4:86978082-86978101 | None:intergenic | 0.0% |
| !! | TAAAAAATAAAAAAAGGAAT+TGG | - | chr3.4:86975942-86975961 | None:intergenic | 10.0% |
| !! | TTTGGATAAAAAATAAAAAA+AGG | - | chr3.4:86975948-86975967 | None:intergenic | 10.0% |
| !!! | AAAAAAAAAAAGTATATTTG+AGG | + | chr3.4:86977788-86977807 | MS.gene013330:intron | 10.0% |
| !!! | AAAAAAAAAAGTATATTTGA+GGG | + | chr3.4:86977789-86977808 | MS.gene013330:intron | 10.0% |
| !!! | AAATTTTATTTATATTACCT+TGG | - | chr3.4:86976066-86976085 | None:intergenic | 10.0% |
| !!! | AATATTCATTTTTTTCATTT+AGG | - | chr3.4:86977071-86977090 | None:intergenic | 10.0% |
| !!! | AATTTTTTGAAAATTTATTG+GGG | - | chr3.4:86978023-86978042 | None:intergenic | 10.0% |
| !!! | CAATTTTTTGAAAATTTATT+GGG | - | chr3.4:86978024-86978043 | None:intergenic | 10.0% |
| !!! | TATACTTTTTTTTTTTTGAA+TGG | - | chr3.4:86977784-86977803 | None:intergenic | 10.0% |
| !! | AAATAACAATTAACTTAATC+CGG | + | chr3.4:86978361-86978380 | MS.gene013330:intron | 15.0% |
| !! | AAATGAGAAAATTGAAATTA+GGG | - | chr3.4:86978056-86978075 | None:intergenic | 15.0% |
| !!! | AATTTTTCAATACTTTTGTT+TGG | - | chr3.4:86978148-86978167 | None:intergenic | 15.0% |
| !!! | ATTTTTCAAATTTTACACTT+TGG | + | chr3.4:86977967-86977986 | MS.gene013330:intron | 15.0% |
| !!! | GCAATTTTTTGAAAATTTAT+TGG | - | chr3.4:86978025-86978044 | None:intergenic | 15.0% |
| !!! | TTAAAAGAATTTAGAATTCT+AGG | - | chr3.4:86978200-86978219 | None:intergenic | 15.0% |
| !!! | TTATTTTTTATTTAGAACCA+TGG | + | chr3.4:86975998-86976017 | MS.gene013330:intron | 15.0% |
| !!! | TTTTGAAATTCTTAACTTTT+AGG | - | chr3.4:86977932-86977951 | None:intergenic | 15.0% |
| !! | AAAATAAAAAAAGGAATTGG+AGG | - | chr3.4:86975939-86975958 | None:intergenic | 20.0% |
| !! | AATAACAATTAACTTAATCC+GGG | + | chr3.4:86978362-86978381 | MS.gene013330:intron | 20.0% |
| !! | AATGAGAAAATTGAAATTAG+GGG | - | chr3.4:86978055-86978074 | None:intergenic | 20.0% |
| !! | AATGCTTGAAATATAATCAA+TGG | + | chr3.4:86978312-86978331 | MS.gene013330:intron | 20.0% |
| !! | AGTTCAAAATCTAACAAAAA+TGG | - | chr3.4:86977489-86977508 | None:intergenic | 20.0% |
| !! | ATAAGCTTGTATGATTAAAA+AGG | + | chr3.4:86976910-86976929 | MS.gene013330:intron | 20.0% |
| !! | CAAATGAGAAAATTGAAATT+AGG | - | chr3.4:86978057-86978076 | None:intergenic | 20.0% |
| !! | TGTGAATTTCAATTAAAGTT+TGG | + | chr3.4:86976120-86976139 | MS.gene013330:intron | 20.0% |
| !! | TTATCCAAATTCTGAATTAT+GGG | + | chr3.4:86975959-86975978 | MS.gene013330:intron | 20.0% |
| !! | TTTATCCAAATTCTGAATTA+TGG | + | chr3.4:86975958-86975977 | MS.gene013330:intron | 20.0% |
| !! | TTTATGAAATAGTTGTTGAT+AGG | + | chr3.4:86976720-86976739 | MS.gene013330:intron | 20.0% |
| !!! | AATTTCATAGTCATCATTTT+TGG | - | chr3.4:86978111-86978130 | None:intergenic | 20.0% |
| !!! | CAAACAATATTTTTTCAAAC+TGG | + | chr3.4:86976480-86976499 | MS.gene013330:intron | 20.0% |
| !!! | CTAATTTCAATTTTCTCATT+TGG | + | chr3.4:86978055-86978074 | MS.gene013330:intron | 20.0% |
| !!! | TGCAAATTTTGGAAAATTTA+TGG | - | chr3.4:86977994-86978013 | None:intergenic | 20.0% |
| !!! | TTGATGAATTTTCAAAATGA+TGG | + | chr3.4:86977855-86977874 | MS.gene013330:intron | 20.0% |
| !!! | TTTTGATTAGATAATTCAAG+TGG | + | chr3.4:86976996-86977015 | MS.gene013330:intron | 20.0% |
| ! | AATATATTCCTTCAGGAAAA+CGG | - | chr3.4:86976853-86976872 | None:intergenic | 25.0% |
| ! | AGATTATATCCTTTCTCTTT+GGG | + | chr3.4:86977424-86977443 | MS.gene013330:intron | 25.0% |
| ! | AGGTAATTCAGTTTACTAAA+TGG | - | chr3.4:86978415-86978434 | None:intergenic | 25.0% |
| ! | ATAAAAATTATCCATAGCCA+TGG | - | chr3.4:86978683-86978702 | None:intergenic | 25.0% |
| ! | ATAAAATATCCCAAAGAGAA+AGG | - | chr3.4:86977436-86977455 | None:intergenic | 25.0% |
| ! | ATAAATGTTGAGTAAATCAG+TGG | + | chr3.4:86976544-86976563 | MS.gene013330:intron | 25.0% |
| ! | ATAACAATTAACTTAATCCG+GGG | + | chr3.4:86978363-86978382 | MS.gene013330:intron | 25.0% |
| ! | ATCTTGAGCATATATTTGAT+AGG | + | chr3.4:86978712-86978731 | MS.gene013330:intron | 25.0% |
| ! | ATTTAACTATTAGAATTCCC+CGG | - | chr3.4:86978383-86978402 | None:intergenic | 25.0% |
| ! | ATTTAGTAAACTGAATTACC+TGG | + | chr3.4:86978414-86978433 | MS.gene013330:intron | 25.0% |
| ! | CTAAACTATCTGTTGAAAAT+CGG | + | chr3.4:86976640-86976659 | MS.gene013330:intron | 25.0% |
| ! | GAATTTCAATTAAAGTTTGG+TGG | + | chr3.4:86976123-86976142 | MS.gene013330:intron | 25.0% |
| ! | TAGATTATATCCTTTCTCTT+TGG | + | chr3.4:86977423-86977442 | MS.gene013330:intron | 25.0% |
| ! | TCAAAATGACAATTACCAAA+CGG | - | chr3.4:86976938-86976957 | None:intergenic | 25.0% |
| ! | TTACTCAACATTTATCTTCA+GGG | - | chr3.4:86976539-86976558 | None:intergenic | 25.0% |
| ! | TTGGTTATTTGATTACTTTC+AGG | + | chr3.4:86977566-86977585 | MS.gene013330:intron | 25.0% |
| ! | TTTACTCAACATTTATCTTC+AGG | - | chr3.4:86976540-86976559 | None:intergenic | 25.0% |
| ! | TTTAGTAAACTGAATTACCT+GGG | + | chr3.4:86978415-86978434 | MS.gene013330:intron | 25.0% |
| !! | AAGGAATATATTTTGTCTGT+TGG | + | chr3.4:86976861-86976880 | MS.gene013330:intron | 25.0% |
| !! | AGTTTAACTATTTTGCATCT+GGG | + | chr3.4:86976259-86976278 | MS.gene013330:intron | 25.0% |
| !! | TAGTTTAACTATTTTGCATC+TGG | + | chr3.4:86976258-86976277 | MS.gene013330:intron | 25.0% |
| !!! | AGTGCATTTTTAGTTTCAAA+AGG | + | chr3.4:86976326-86976345 | MS.gene013330:intron | 25.0% |
| !!! | GACATTTTTTAAACCTCTTT+CGG | - | chr3.4:86976514-86976533 | None:intergenic | 25.0% |
| !!! | GTAATTTTGATTTTAGGCTA+AGG | + | chr3.4:86976148-86976167 | MS.gene013330:intron | 25.0% |
| !!! | GTGGTTGTAATTTTGATTTT+AGG | + | chr3.4:86976142-86976161 | MS.gene013330:intron | 25.0% |
| !!! | TTTCAATACTTTTGTTTGGA+TGG | - | chr3.4:86978144-86978163 | None:intergenic | 25.0% |
| !!! | TTTTTTCATTTAGGATTGCA+GGG | - | chr3.4:86977062-86977081 | None:intergenic | 25.0% |
| !!! | TTTTTTTCATTTAGGATTGC+AGG | - | chr3.4:86977063-86977082 | None:intergenic | 25.0% |
| AAAAAAAGGAATTGGAGGAT+TGG | - | chr3.4:86975934-86975953 | None:intergenic | 30.0% | |
| AAAAGGAAAGGTAACATACA+AGG | - | chr3.4:86977711-86977730 | None:intergenic | 30.0% | |
| AGGACTCAATTAAATAACCT+GGG | - | chr3.4:86976622-86976641 | None:intergenic | 30.0% | |
| AGTACCCATAATTCAGAATT+TGG | - | chr3.4:86975966-86975985 | None:intergenic | 30.0% | |
| AGTTTACACGATAAACTGTT+AGG | + | chr3.4:86978786-86978805 | MS.gene013330:intron | 30.0% | |
| ATAACAGAAATAGAGTGCAA+AGG | - | chr3.4:86977546-86977565 | None:intergenic | 30.0% | |
| CAAAATGACAATTACCAAAC+GGG | - | chr3.4:86976937-86976956 | None:intergenic | 30.0% | |
| CAAATATATGCTCAAGATCA+AGG | - | chr3.4:86978710-86978729 | None:intergenic | 30.0% | |
| CAAATGCTGATAAAAACTTG+TGG | + | chr3.4:86976784-86976803 | MS.gene013330:intron | 30.0% | |
| CAATTAAATAACCTGGGTTA+GGG | - | chr3.4:86976616-86976635 | None:intergenic | 30.0% | |
| CAGACAAAATATATTCCTTC+AGG | - | chr3.4:86976860-86976879 | None:intergenic | 30.0% | |
| CATGCTTATAAGAAAGAAGA+TGG | + | chr3.4:86977381-86977400 | MS.gene013330:intron | 30.0% | |
| CATTGAAACTACTATTACCA+AGG | + | chr3.4:86976046-86976065 | MS.gene013330:CDS | 30.0% | |
| GTTTACACGATAAACTGTTA+GGG | + | chr3.4:86978787-86978806 | MS.gene013330:intron | 30.0% | |
| TAGGACTCAATTAAATAACC+TGG | - | chr3.4:86976623-86976642 | None:intergenic | 30.0% | |
| TCAATTAAATAACCTGGGTT+AGG | - | chr3.4:86976617-86976636 | None:intergenic | 30.0% | |
| TCTCATTGATAGAACTCAAA+TGG | + | chr3.4:86976693-86976712 | MS.gene013330:intron | 30.0% | |
| TTGAGGTGAAATTCATTGTT+TGG | + | chr3.4:86977824-86977843 | MS.gene013330:intron | 30.0% | |
| ! | AAGCATTTAGATTTTCATCC+AGG | - | chr3.4:86978299-86978318 | None:intergenic | 30.0% |
| ! | ATCGTAATCGTATGCATTTT+CGG | + | chr3.4:86976087-86976106 | MS.gene013330:intron | 30.0% |
| ! | ATTTATCTAGCTTGACTACT+TGG | + | chr3.4:86978753-86978772 | MS.gene013330:intron | 30.0% |
| ! | CGATTTTCAACAGATAGTTT+AGG | - | chr3.4:86976642-86976661 | None:intergenic | 30.0% |
| ! | CTGATTGAATTTGAAGTGTT+TGG | - | chr3.4:86977156-86977175 | None:intergenic | 30.0% |
| ! | CTGGGTATGCAAATTTTAAA+TGG | + | chr3.4:86976277-86976296 | MS.gene013330:intron | 30.0% |
| ! | CTTCTATTGTTTCTTGTTCT+TGG | + | chr3.4:86976355-86976374 | MS.gene013330:intron | 30.0% |
| ! | TTATTTTCACGAGCTTATAG+TGG | + | chr3.4:86976972-86976991 | MS.gene013330:intron | 30.0% |
| !! | AGTCATTGTTATTTGTTTGC+TGG | + | chr3.4:86978255-86978274 | MS.gene013330:intron | 30.0% |
| !! | TGCACTCTATTTCTGTTATT+TGG | + | chr3.4:86977547-86977566 | MS.gene013330:intron | 30.0% |
| !! | TTTAAATGGACTGTGAAATG+TGG | + | chr3.4:86976291-86976310 | MS.gene013330:intron | 30.0% |
| !! | TTTTTCATTTAGGATTGCAG+GGG | - | chr3.4:86977061-86977080 | None:intergenic | 30.0% |
| !!! | ATTTTGATTTTAGGCTAAGG+AGG | + | chr3.4:86976151-86976170 | MS.gene013330:intron | 30.0% |
| AAACTGCATTAAATAACCCC+TGG | - | chr3.4:86976591-86976610 | None:intergenic | 35.0% | |
| AACTGTAACAAACATGCATG+TGG | - | chr3.4:86978599-86978618 | None:intergenic | 35.0% | |
| ACAAAGCCAAAGAACATCTA+TGG | - | chr3.4:86977274-86977293 | None:intergenic | 35.0% | |
| ATACTGATGAAAAACCACCA+GGG | + | chr3.4:86976571-86976590 | MS.gene013330:intron | 35.0% | |
| ATGATTAAAAAGGACCCGTT+TGG | + | chr3.4:86976920-86976939 | MS.gene013330:intron | 35.0% | |
| ATTAGAACTCGCGGTAAAAA+AGG | - | chr3.4:86977728-86977747 | None:intergenic | 35.0% | |
| CTTAAGTTAACGTTCTAACC+TGG | + | chr3.4:86978278-86978297 | MS.gene013330:intron | 35.0% | |
| GAGGGAATTCAAATACTTTG+AGG | + | chr3.4:86977807-86977826 | MS.gene013330:intron | 35.0% | |
| GTGTTTCAAAAGCAGATGAA+AGG | - | chr3.4:86977311-86977330 | None:intergenic | 35.0% | |
| TTAGGTGTTCCGTATATTTG+CGG | + | chr3.4:86977683-86977702 | MS.gene013330:intron | 35.0% | |
| TTCTCCTCGTTAGTATATCT+CGG | + | chr3.4:86977622-86977641 | MS.gene013330:intron | 35.0% | |
| ! | ATTACTTTCAGGTGCTATGA+TGG | + | chr3.4:86977577-86977596 | MS.gene013330:intron | 35.0% |
| ! | GCTGATAAGCTAGCTTATAT+CGG | - | chr3.4:86977236-86977255 | None:intergenic | 35.0% |
| ! | TGGGGTCAAATTGCAAATTT+TGG | - | chr3.4:86978005-86978024 | None:intergenic | 35.0% |
| !! | AGCTAGCTTATAGTTGATAG+CGG | - | chr3.4:86977188-86977207 | None:intergenic | 35.0% |
| !! | TATCCATAGCCATGGTTTTA+TGG | - | chr3.4:86978675-86978694 | None:intergenic | 35.0% |
| !!! | ATCCATAGCCATGGTTTTAT+GGG | - | chr3.4:86978674-86978693 | None:intergenic | 35.0% |
| !!! | TCATTTTGATTGCCTTGGTT+CGG | + | chr3.4:86976745-86976764 | MS.gene013330:intron | 35.0% |
| AAAGCATGTTAACCTGAGCA+TGG | - | chr3.4:86975907-86975926 | None:intergenic | 40.0% | |
| AACAGACATTGTGTTGTGCA+GGG | + | chr3.4:86978965-86978984 | MS.gene013330:intron | 40.0% | |
| AACTCGCGGTAAAAAAGGAA+AGG | - | chr3.4:86977723-86977742 | None:intergenic | 40.0% | |
| AAGCAGATGAAAGGTGATGA+AGG | - | chr3.4:86977302-86977321 | None:intergenic | 40.0% | |
| ACAGAGCCATAGATGTTCTT+TGG | + | chr3.4:86977265-86977284 | MS.gene013330:intron | 40.0% | |
| ACTTCATCCAAACACACTCT+TGG | + | chr3.4:86978231-86978250 | MS.gene013330:intron | 40.0% | |
| ATTACCTGGGCTTCATAGTT+TGG | + | chr3.4:86978428-86978447 | MS.gene013330:intron | 40.0% | |
| CTTCATCCAAACACACTCTT+GGG | + | chr3.4:86978232-86978251 | MS.gene013330:intron | 40.0% | |
| GATACTGATGAAAAACCACC+AGG | + | chr3.4:86976570-86976589 | MS.gene013330:intron | 40.0% | |
| GTAACAAACATGCATGTGGA+AGG | - | chr3.4:86978595-86978614 | None:intergenic | 40.0% | |
| TAACCCCTTAAAACCTCCTA+TGG | - | chr3.4:86977666-86977685 | None:intergenic | 40.0% | |
| TACTGATGAAAAACCACCAG+GGG | + | chr3.4:86976572-86976591 | MS.gene013330:intron | 40.0% | |
| TAGAAGGCTTGCGGATAATA+TGG | + | chr3.4:86976175-86976194 | MS.gene013330:CDS | 40.0% | |
| TATGGTACAGCTTGGTAAAG+AGG | + | chr3.4:86976193-86976212 | MS.gene013330:CDS | 40.0% | |
| TCACAAGCTGTTTACAGAAC+TGG | + | chr3.4:86978864-86978883 | MS.gene013330:CDS | 40.0% | |
| TGATGAGTCCCATAAAACCA+TGG | + | chr3.4:86978663-86978682 | MS.gene013330:intron | 40.0% | |
| TGCAGAAAAGGTTGAGAAAC+TGG | - | chr3.4:86978456-86978475 | None:intergenic | 40.0% | |
| TGGCAAATTTATTCTCGACG+AGG | - | chr3.4:86977764-86977783 | None:intergenic | 40.0% | |
| TTAACCTGAGCATGGATAAC+CGG | - | chr3.4:86975899-86975918 | None:intergenic | 40.0% | |
| TTACCTGGGCTTCATAGTTT+GGG | + | chr3.4:86978429-86978448 | MS.gene013330:intron | 40.0% | |
| TTAGGATTGCAGGGGTAAAA+TGG | - | chr3.4:86977053-86977072 | None:intergenic | 40.0% | |
| TTCATAGTGCTTGTGCGTTT+GGG | + | chr3.4:86978546-86978565 | MS.gene013330:intron | 40.0% | |
| TTTAGGCTAAGGAGGTTAGA+AGG | + | chr3.4:86976159-86976178 | MS.gene013330:intron | 40.0% | |
| ! | ACTGGTTTAAGTTCCGAAAG+AGG | + | chr3.4:86976498-86976517 | MS.gene013330:intron | 40.0% |
| ! | AGAACATCTATGGCTCTGTT+TGG | - | chr3.4:86977264-86977283 | None:intergenic | 40.0% |
| ! | ATGGGAACTAATGGTGGAAA+AGG | - | chr3.4:86978644-86978663 | None:intergenic | 40.0% |
| ! | GACTACATGTTTTGTGAGAG+TGG | - | chr3.4:86977349-86977368 | None:intergenic | 40.0% |
| ! | TGGGAACTAATGGTGGAAAA+GGG | - | chr3.4:86978643-86978662 | None:intergenic | 40.0% |
| !! | AGTTTGTTTTCACCTCAGTC+AGG | + | chr3.4:86978506-86978525 | MS.gene013330:intron | 40.0% |
| !! | GGTTTTATGGGACTCATCAT+GGG | - | chr3.4:86978662-86978681 | None:intergenic | 40.0% |
| !! | GTTTGTTTTCACCTCAGTCA+GGG | + | chr3.4:86978507-86978526 | MS.gene013330:intron | 40.0% |
| !! | TACAAGGTGCCGCAAATATA+CGG | - | chr3.4:86977695-86977714 | None:intergenic | 40.0% |
| !! | TTTGTTTTCACCTCAGTCAG+GGG | + | chr3.4:86978508-86978527 | MS.gene013330:intron | 40.0% |
| !!! | AGGCATCATTTTGATTGCCT+TGG | + | chr3.4:86976740-86976759 | MS.gene013330:intron | 40.0% |
| !!! | ATAGGAGGTTTTAAGGGGTT+AGG | + | chr3.4:86977665-86977684 | MS.gene013330:intron | 40.0% |
| !!! | TGGTTTTATGGGACTCATCA+TGG | - | chr3.4:86978663-86978682 | None:intergenic | 40.0% |
| ATTCCTTCAGGAAAACGGAC+AGG | - | chr3.4:86976848-86976867 | None:intergenic | 45.0% | |
| CTCATCATGGGAACTAATGG+TGG | - | chr3.4:86978650-86978669 | None:intergenic | 45.0% | |
| CTGCATTAAATAACCCCTGG+TGG | - | chr3.4:86976588-86976607 | None:intergenic | 45.0% | |
| CTTCATAGTGCTTGTGCGTT+TGG | + | chr3.4:86978545-86978564 | MS.gene013330:intron | 45.0% | |
| GAACAGACATTGTGTTGTGC+AGG | + | chr3.4:86978964-86978983 | MS.gene013330:intron | 45.0% | |
| GAGACCGAGATATACTAACG+AGG | - | chr3.4:86977629-86977648 | None:intergenic | 45.0% | |
| GCGGATAATATGGTACAGCT+TGG | + | chr3.4:86976185-86976204 | MS.gene013330:CDS | 45.0% | |
| GGACTCATCATGGGAACTAA+TGG | - | chr3.4:86978653-86978672 | None:intergenic | 45.0% | |
| GTATATCTCGGTCTCAACAC+CGG | + | chr3.4:86977634-86977653 | MS.gene013330:intron | 45.0% | |
| GTCCCATAAAACCATGGCTA+TGG | + | chr3.4:86978669-86978688 | MS.gene013330:intron | 45.0% | |
| TAAGGAGGTTAGAAGGCTTG+CGG | + | chr3.4:86976166-86976185 | MS.gene013330:CDS | 45.0% | |
| TACCTGGGCTTCATAGTTTG+GGG | + | chr3.4:86978430-86978449 | MS.gene013330:intron | 45.0% | |
| TAGAACCATGGTCTCGCAAT+TGG | + | chr3.4:86976010-86976029 | MS.gene013330:intron | 45.0% | |
| TCAATCGAGATACGTCTCAC+CGG | + | chr3.4:86975877-86975896 | MS.gene013330:CDS | 45.0% | |
| TGCAACACTATACCGAACCA+AGG | - | chr3.4:86976760-86976779 | None:intergenic | 45.0% | |
| ! | ATCGAACTGGTGGATACACT+AGG | + | chr3.4:86978988-86979007 | MS.gene013330:CDS | 45.0% |
| ! | ATGACTCCCAAGAGTGTGTT+TGG | - | chr3.4:86978241-86978260 | None:intergenic | 45.0% |
| ! | ATGCAGTTTTTCCCTAACCC+AGG | + | chr3.4:86976602-86976621 | MS.gene013330:intron | 45.0% |
| ! | GTTTTGTGAGAGTGGATGCA+TGG | - | chr3.4:86977341-86977360 | None:intergenic | 45.0% |
| ! | TCGAACTGGTGGATACACTA+GGG | + | chr3.4:86978989-86979008 | MS.gene013330:CDS | 45.0% |
| ! | TCTCGCCATAGGAGGTTTTA+AGG | + | chr3.4:86977658-86977677 | MS.gene013330:intron | 45.0% |
| ! | TTTCAGGTGCTATGATGGTG+AGG | + | chr3.4:86977582-86977601 | MS.gene013330:intron | 45.0% |
| !! | CTCGCCATAGGAGGTTTTAA+GGG | + | chr3.4:86977659-86977678 | MS.gene013330:intron | 45.0% |
| !! | GCAAGAAGCATTAGAACTCG+CGG | - | chr3.4:86977737-86977756 | None:intergenic | 45.0% |
| !!! | TCGCCATAGGAGGTTTTAAG+GGG | + | chr3.4:86977660-86977679 | MS.gene013330:intron | 45.0% |
| AAACCTCCTATGGCGAGATC+CGG | - | chr3.4:86977656-86977675 | None:intergenic | 50.0% | |
| CAGCGAAGTGAGTGCAGAAA+AGG | - | chr3.4:86978468-86978487 | None:intergenic | 50.0% | |
| TTCACCTCAGTCAGGGGATA+TGG | + | chr3.4:86978514-86978533 | MS.gene013330:intron | 50.0% | |
| ! | AGTCAGGGGATATGGCTTGT+GGG | + | chr3.4:86978522-86978541 | MS.gene013330:intron | 50.0% |
| ! | GTGGATACACTAGGGTGCTA+CGG | + | chr3.4:86978997-86979016 | MS.gene013330:CDS | 50.0% |
| !! | AGTTGGTGATGCTGCACCAA+TGG | + | chr3.4:86979031-86979050 | MS.gene013330:CDS | 50.0% |
| AGCACGCCTTGCAGCACATA+CGG | - | chr3.4:86978815-86978834 | None:intergenic | 55.0% | |
| AGGGATCCGTATGTGCTGCA+AGG | + | chr3.4:86978806-86978825 | MS.gene013330:intron | 55.0% | |
| CAAGCCATATCCCCTGACTG+AGG | - | chr3.4:86978521-86978540 | None:intergenic | 55.0% | |
| CAATGGTGACAGTGCGACAC+TGG | + | chr3.4:86978329-86978348 | MS.gene013330:intron | 55.0% | |
| CAGTCAGGGGATATGGCTTG+TGG | + | chr3.4:86978521-86978540 | MS.gene013330:intron | 55.0% | |
| CCATGGTCTCGCAATTGGTG+AGG | + | chr3.4:86976015-86976034 | MS.gene013330:CDS | 55.0% | |
| CCTCACCAATTGCGAGACCA+TGG | - | chr3.4:86976018-86976037 | None:intergenic | 55.0% | |
| CCTTCAGGAAAACGGACAGG+AGG | - | chr3.4:86976845-86976864 | None:intergenic | 55.0% | |
| CTACGGACTCGCATTCGAGT+TGG | + | chr3.4:86979014-86979033 | MS.gene013330:CDS | 55.0% | |
| GTGAGGCAGGGATATGCTTG+CGG | + | chr3.4:86977599-86977618 | MS.gene013330:intron | 55.0% | |
| GTGTTGTGCAGGGATCGAAC+TGG | + | chr3.4:86978975-86978994 | MS.gene013330:intron | 55.0% | |
| TCAACACCGGATCTCGCCAT+AGG | + | chr3.4:86977647-86977666 | MS.gene013330:intron | 55.0% | |
| TGAGAGTGGATGCATGGCGT+TGG | - | chr3.4:86977335-86977354 | None:intergenic | 55.0% | |
| TTGTGCAGGGATCGAACTGG+TGG | + | chr3.4:86978978-86978997 | MS.gene013330:intron | 55.0% | |
| ! | AGGTGCTATGATGGTGAGGC+AGG | + | chr3.4:86977586-86977605 | MS.gene013330:intron | 55.0% |
| ! | CCTCCTGTCCGTTTTCCTGA+AGG | + | chr3.4:86976842-86976861 | MS.gene013330:intron | 55.0% |
| ! | CTCACCGGTTATCCATGCTC+AGG | + | chr3.4:86975892-86975911 | MS.gene013330:CDS | 55.0% |
| ! | GGTGCTATGATGGTGAGGCA+GGG | + | chr3.4:86977587-86977606 | MS.gene013330:intron | 55.0% |
| ACACCGGATCTCGCCATAGG+AGG | + | chr3.4:86977650-86977669 | MS.gene013330:intron | 60.0% | |
| GGCCCCAAACTATGAAGCCC+AGG | - | chr3.4:86978435-86978454 | None:intergenic | 60.0% | |
| ! | CGTGCTGCTAGTTTCGTGCG+AGG | + | chr3.4:86978829-86978848 | MS.gene013330:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 86975858 | 86979067 | 86975858 | ID=MS.gene013330 |
| chr3.4 | mRNA | 86975858 | 86979067 | 86975858 | ID=MS.gene013330.t1;Parent=MS.gene013330 |
| chr3.4 | exon | 86975858 | 86975913 | 86975858 | ID=MS.gene013330.t1.exon1;Parent=MS.gene013330.t1 |
| chr3.4 | CDS | 86975858 | 86975913 | 86975858 | ID=cds.MS.gene013330.t1;Parent=MS.gene013330.t1 |
| chr3.4 | exon | 86976013 | 86976067 | 86976013 | ID=MS.gene013330.t1.exon2;Parent=MS.gene013330.t1 |
| chr3.4 | CDS | 86976013 | 86976067 | 86976013 | ID=cds.MS.gene013330.t1;Parent=MS.gene013330.t1 |
| chr3.4 | exon | 86976164 | 86976214 | 86976164 | ID=MS.gene013330.t1.exon3;Parent=MS.gene013330.t1 |
| chr3.4 | CDS | 86976164 | 86976214 | 86976164 | ID=cds.MS.gene013330.t1;Parent=MS.gene013330.t1 |
| chr3.4 | exon | 86978808 | 86978899 | 86978808 | ID=MS.gene013330.t1.exon4;Parent=MS.gene013330.t1 |
| chr3.4 | CDS | 86978808 | 86978899 | 86978808 | ID=cds.MS.gene013330.t1;Parent=MS.gene013330.t1 |
| chr3.4 | exon | 86978986 | 86979067 | 86978986 | ID=MS.gene013330.t1.exon5;Parent=MS.gene013330.t1 |
| chr3.4 | CDS | 86978986 | 86979067 | 86978986 | ID=cds.MS.gene013330.t1;Parent=MS.gene013330.t1 |
| Gene Sequence |
| Protein sequence |
