Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06427.t1 | XP_003602582.1 | 99.1 | 110 | 1 | 0 | 1 | 110 | 1 | 110 | 2.70E-51 | 211.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06427.t1 | A0L5Z9 | 56.1 | 107 | 46 | 1 | 5 | 110 | 8 | 114 | 2.3e-27 | 122.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06427.t1 | G7JBH3 | 99.1 | 110 | 1 | 0 | 1 | 110 | 1 | 110 | 1.9e-51 | 211.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene001444 | MS.gene06427 | PPI |
| MS.gene06427 | MS.gene028903 | PPI |
| MS.gene06427 | MS.gene055808 | PPI |
| MS.gene31468 | MS.gene06427 | PPI |
| MS.gene06427 | MS.gene82915 | PPI |
| MS.gene06427 | MS.gene043435 | PPI |
| MS.gene049140 | MS.gene06427 | PPI |
| MS.gene06427 | MS.gene001687 | PPI |
| MS.gene06427 | MS.gene30981 | PPI |
| MS.gene06427 | MS.gene026968 | PPI |
| MS.gene06427 | MS.gene60861 | PPI |
| MS.gene34167 | MS.gene06427 | PPI |
| MS.gene015732 | MS.gene06427 | PPI |
| MS.gene06427 | MS.gene005865 | PPI |
| MS.gene05937 | MS.gene06427 | PPI |
| MS.gene013330 | MS.gene06427 | PPI |
| MS.gene06427 | MS.gene001446 | PPI |
| MS.gene06427 | MS.gene04780 | PPI |
| MS.gene60589 | MS.gene06427 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06427.t1 | MTR_3g095900 | 99.091 | 110 | 1 | 0 | 1 | 110 | 1 | 110 | 9.19e-77 | 223 |
| MS.gene06427.t1 | MTR_8g103900 | 94.545 | 110 | 6 | 0 | 1 | 110 | 1 | 110 | 2.97e-74 | 217 |
| MS.gene06427.t1 | MTR_3g062930 | 43.519 | 108 | 61 | 0 | 3 | 110 | 104 | 211 | 1.53e-27 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06427.t1 | AT5G09770 | 85.455 | 110 | 16 | 0 | 1 | 110 | 1 | 110 | 5.62e-67 | 199 |
| MS.gene06427.t1 | AT5G64650 | 85.455 | 110 | 16 | 0 | 1 | 110 | 1 | 110 | 9.83e-67 | 198 |
| MS.gene06427.t1 | AT3G54210 | 43.519 | 108 | 61 | 0 | 3 | 110 | 101 | 208 | 1.09e-27 | 100 |
Find 27 sgRNAs with CRISPR-Local
Find 201 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGAAGGCTTGCGGATAATA+TGG | 0.358643 | 3.2:+80047901 | MS.gene06427:CDS |
| TTTAGGCTAAGGAGGTTAGA+AGG | 0.388038 | 3.2:+80047885 | MS.gene06427:intron |
| TCACAAGCTGTTTACAGAAC+TGG | 0.397878 | 3.2:+80050583 | MS.gene06427:CDS |
| TAGAACCATGGTCTCGCAAT+TGG | 0.405067 | 3.2:+80047736 | MS.gene06427:intron |
| AAGAGAGATTTACTCAATAT+AGG | 0.440103 | 3.2:-80050773 | None:intergenic |
| TTAACCTGAGCATGGATAAC+CGG | 0.473739 | 3.2:-80047617 | None:intergenic |
| AGCACGCCTTGCAGCACATA+CGG | 0.513486 | 3.2:-80050531 | None:intergenic |
| TATGGTACAGCTTGGTAAAG+AGG | 0.517654 | 3.2:+80047919 | MS.gene06427:CDS |
| CTGCCAAAATGACAAAGCTC+AGG | 0.541799 | 3.2:+80047571 | None:intergenic |
| ATTTACTCAATATAGGCCAT+TGG | 0.558368 | 3.2:-80050766 | None:intergenic |
| CTCACCGGTTATCCATGCTC+AGG | 0.565167 | 3.2:+80047613 | MS.gene06427:CDS |
| AGTTGGTGATGCTGCACCAA+TGG | 0.577706 | 3.2:+80050750 | MS.gene06427:CDS |
| GCGGATAATATGGTACAGCT+TGG | 0.582534 | 3.2:+80047911 | MS.gene06427:CDS |
| GTGGATACACTAGGGTGCTA+CGG | 0.583066 | 3.2:+80050716 | MS.gene06427:CDS |
| CATTGAAACTACTATTACCA+AGG | 0.585744 | 3.2:+80047772 | MS.gene06427:CDS |
| ATCGAACTGGTGGATACACT+AGG | 0.599188 | 3.2:+80050707 | MS.gene06427:CDS |
| CTACGGACTCGCATTCGAGT+TGG | 0.599565 | 3.2:+80050733 | MS.gene06427:CDS |
| GTGTTGTGCAGGGATCGAAC+TGG | 0.602705 | 3.2:+80050694 | MS.gene06427:intron |
| AGGGATCCGTATGTGCTGCA+AGG | 0.603781 | 3.2:+80050525 | MS.gene06427:intron |
| AAAGCATGTTAACCTGAGCA+TGG | 0.605726 | 3.2:-80047625 | None:intergenic |
| CCTCACCAATTGCGAGACCA+TGG | 0.612029 | 3.2:-80047741 | None:intergenic |
| CCATGGTCTCGCAATTGGTG+AGG | 0.620210 | 3.2:+80047741 | MS.gene06427:CDS |
| TTGTGCAGGGATCGAACTGG+TGG | 0.637626 | 3.2:+80050697 | MS.gene06427:intron |
| TAAGGAGGTTAGAAGGCTTG+CGG | 0.643881 | 3.2:+80047892 | MS.gene06427:CDS |
| TCAATCGAGATACGTCTCAC+CGG | 0.647896 | 3.2:+80047598 | MS.gene06427:CDS |
| TCGAACTGGTGGATACACTA+GGG | 0.666236 | 3.2:+80050708 | MS.gene06427:CDS |
| CGTGCTGCTAGTTTCGTGCG+AGG | 0.668394 | 3.2:+80050548 | MS.gene06427:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAATAAATAAAAAAA+AGG | - | chr3.2:80047669-80047688 | None:intergenic | 0.0% |
| !!! | TTATAAATTTTAATTTTTTT+GGG | - | chr3.2:80049800-80049819 | None:intergenic | 0.0% |
| !!! | TTTATAAATTTTAATTTTTT+TGG | - | chr3.2:80049801-80049820 | None:intergenic | 0.0% |
| !! | AATAAATAAAAAAAAGGAAT+TGG | - | chr3.2:80047663-80047682 | None:intergenic | 10.0% |
| !!! | AAAAAAAAAAAGTATATTTG+AGG | + | chr3.2:80049507-80049526 | MS.gene06427:intron | 10.0% |
| !!! | AAAAAAAAAAGTATATTTGA+GGG | + | chr3.2:80049508-80049527 | MS.gene06427:intron | 10.0% |
| !!! | AAATTTTATTTATATTACCT+TGG | - | chr3.2:80047792-80047811 | None:intergenic | 10.0% |
| !!! | AATATTCATTTTTTTCAATT+AGG | - | chr3.2:80048791-80048810 | None:intergenic | 10.0% |
| !!! | AATTTTTTGAAAATTTATTG+GGG | - | chr3.2:80049742-80049761 | None:intergenic | 10.0% |
| !!! | ATATACTTTTTTTTTTTGAA+TGG | - | chr3.2:80049504-80049523 | None:intergenic | 10.0% |
| !!! | CAATTTTTTGAAAATTTATT+GGG | - | chr3.2:80049743-80049762 | None:intergenic | 10.0% |
| !! | AAATAACAATTAACTTAATC+CGG | + | chr3.2:80050080-80050099 | MS.gene06427:intron | 15.0% |
| !! | AAATGAGAAAATTGAAATTA+GGG | - | chr3.2:80049775-80049794 | None:intergenic | 15.0% |
| !!! | AATTTTTCAATACTTTTGTT+TGG | - | chr3.2:80049867-80049886 | None:intergenic | 15.0% |
| !!! | ATTTTTCAAATTTTACACTT+TGG | + | chr3.2:80049686-80049705 | MS.gene06427:intron | 15.0% |
| !!! | GCAATTTTTTGAAAATTTAT+TGG | - | chr3.2:80049744-80049763 | None:intergenic | 15.0% |
| !!! | TTAAAAGAATTTAGAATTCT+AGG | - | chr3.2:80049919-80049938 | None:intergenic | 15.0% |
| !!! | TTATTTTTTATTTAGAACCA+TGG | + | chr3.2:80047724-80047743 | MS.gene06427:intron | 15.0% |
| !!! | TTTTGAAATTCTTAACTTTT+AGG | - | chr3.2:80049651-80049670 | None:intergenic | 15.0% |
| !! | AAATAAAAAAAAGGAATTGG+AGG | - | chr3.2:80047660-80047679 | None:intergenic | 20.0% |
| !! | AATAACAATTAACTTAATCC+GGG | + | chr3.2:80050081-80050100 | MS.gene06427:intron | 20.0% |
| !! | AATGAGAAAATTGAAATTAG+GGG | - | chr3.2:80049774-80049793 | None:intergenic | 20.0% |
| !! | AATGCTTGAAATATAATCAA+TGG | + | chr3.2:80050031-80050050 | MS.gene06427:intron | 20.0% |
| !! | AGTTCAAAATCTAACAAAAA+TGG | - | chr3.2:80049209-80049228 | None:intergenic | 20.0% |
| !! | ATAAGCTTGTATGATTAAAA+AGG | + | chr3.2:80048630-80048649 | MS.gene06427:intron | 20.0% |
| !! | CAAATGAGAAAATTGAAATT+AGG | - | chr3.2:80049776-80049795 | None:intergenic | 20.0% |
| !! | TGTGAATTTCAATTAAAGTT+TGG | + | chr3.2:80047846-80047865 | MS.gene06427:intron | 20.0% |
| !! | TTATCCAAATTCTGAATTAT+GGG | + | chr3.2:80047685-80047704 | MS.gene06427:intron | 20.0% |
| !! | TTGATTATATTTCAAGCATT+TGG | - | chr3.2:80050031-80050050 | None:intergenic | 20.0% |
| !! | TTTATCCAAATTCTGAATTA+TGG | + | chr3.2:80047684-80047703 | MS.gene06427:intron | 20.0% |
| !! | TTTATGAAATAGTTGTTGAT+AGG | + | chr3.2:80048440-80048459 | MS.gene06427:intron | 20.0% |
| !!! | AAACAATATTCTTTTCAAAC+TGG | + | chr3.2:80048200-80048219 | MS.gene06427:intron | 20.0% |
| !!! | AATTTCATAGTCATCATTTT+TGG | - | chr3.2:80049830-80049849 | None:intergenic | 20.0% |
| !!! | CTAATTTCAATTTTCTCATT+TGG | + | chr3.2:80049774-80049793 | MS.gene06427:intron | 20.0% |
| !!! | TGCAAATTTTGGAAAATTTA+TGG | - | chr3.2:80049713-80049732 | None:intergenic | 20.0% |
| !!! | TTGATGAATTTTCAAAATGA+TGG | + | chr3.2:80049574-80049593 | MS.gene06427:intron | 20.0% |
| !!! | TTTTGATTAGATAATTCAAG+TGG | + | chr3.2:80048716-80048735 | MS.gene06427:intron | 20.0% |
| ! | AATATATTCCTTCAGGAAAA+CGG | - | chr3.2:80048573-80048592 | None:intergenic | 25.0% |
| ! | AGATTATATCCTTTCTCTTT+GGG | + | chr3.2:80049144-80049163 | MS.gene06427:intron | 25.0% |
| ! | AGGTAATTCAGTTTACTAAA+TGG | - | chr3.2:80050134-80050153 | None:intergenic | 25.0% |
| ! | ATAAAAATTATCCATAGCCA+TGG | - | chr3.2:80050402-80050421 | None:intergenic | 25.0% |
| ! | ATAAAATATCCCAAAGAGAA+AGG | - | chr3.2:80049156-80049175 | None:intergenic | 25.0% |
| ! | ATAAATGTTGAGTAAATCAG+TGG | + | chr3.2:80048264-80048283 | MS.gene06427:intron | 25.0% |
| ! | ATAACAATTAACTTAATCCG+GGG | + | chr3.2:80050082-80050101 | MS.gene06427:intron | 25.0% |
| ! | ATCTTGAGCATATATTTGAT+AGG | + | chr3.2:80050431-80050450 | MS.gene06427:intron | 25.0% |
| ! | ATTTAACTATTAGAATTCCC+CGG | - | chr3.2:80050102-80050121 | None:intergenic | 25.0% |
| ! | ATTTAGTAAACTGAATTACC+TGG | + | chr3.2:80050133-80050152 | MS.gene06427:intron | 25.0% |
| ! | CTAAACTATCTGTTGAAAAT+CGG | + | chr3.2:80048360-80048379 | MS.gene06427:intron | 25.0% |
| ! | GAATTTCAATTAAAGTTTGG+TGG | + | chr3.2:80047849-80047868 | MS.gene06427:intron | 25.0% |
| ! | TAGATTATATCCTTTCTCTT+TGG | + | chr3.2:80049143-80049162 | MS.gene06427:intron | 25.0% |
| ! | TCAAAATGACAATTACCAAA+CGG | - | chr3.2:80048658-80048677 | None:intergenic | 25.0% |
| ! | TTACTCAACATTTATCTTCA+GGG | - | chr3.2:80048259-80048278 | None:intergenic | 25.0% |
| ! | TTGGTTATTTGATTACTTTC+AGG | + | chr3.2:80049286-80049305 | MS.gene06427:intron | 25.0% |
| ! | TTTACTCAACATTTATCTTC+AGG | - | chr3.2:80048260-80048279 | None:intergenic | 25.0% |
| ! | TTTAGTAAACTGAATTACCT+GGG | + | chr3.2:80050134-80050153 | MS.gene06427:intron | 25.0% |
| !! | AAGGAATATATTTTGTCTGT+TGG | + | chr3.2:80048581-80048600 | MS.gene06427:intron | 25.0% |
| !! | AGTTTAACTATTTTGCATCT+GGG | + | chr3.2:80047985-80048004 | MS.gene06427:intron | 25.0% |
| !! | TAGTTTAACTATTTTGCATC+TGG | + | chr3.2:80047984-80048003 | MS.gene06427:intron | 25.0% |
| !!! | AGTGCATTTTTAGTTTCAAA+AGG | + | chr3.2:80048052-80048071 | MS.gene06427:intron | 25.0% |
| !!! | GACATTTTTTAAACCTCTTT+CGG | - | chr3.2:80048234-80048253 | None:intergenic | 25.0% |
| !!! | GTAATTTTGATTTTAGGCTA+AGG | + | chr3.2:80047874-80047893 | MS.gene06427:intron | 25.0% |
| !!! | GTGGTTGTAATTTTGATTTT+AGG | + | chr3.2:80047868-80047887 | MS.gene06427:intron | 25.0% |
| !!! | TTTCAATACTTTTGTTTGGA+TGG | - | chr3.2:80049863-80049882 | None:intergenic | 25.0% |
| !!! | TTTTTTCAATTAGGATTGCA+GGG | - | chr3.2:80048782-80048801 | None:intergenic | 25.0% |
| !!! | TTTTTTTCAATTAGGATTGC+AGG | - | chr3.2:80048783-80048802 | None:intergenic | 25.0% |
| AAAAAAAGGAATTGGAGGAT+TGG | - | chr3.2:80047655-80047674 | None:intergenic | 30.0% | |
| AAAAGGAAAGGTAACATACA+AGG | - | chr3.2:80049431-80049450 | None:intergenic | 30.0% | |
| AGGACTCAATTAAATAACCT+GGG | - | chr3.2:80048342-80048361 | None:intergenic | 30.0% | |
| AGTACCCATAATTCAGAATT+TGG | - | chr3.2:80047692-80047711 | None:intergenic | 30.0% | |
| AGTTTACACGATAAACTGTT+AGG | + | chr3.2:80050505-80050524 | MS.gene06427:intron | 30.0% | |
| ATAACAGAAATAGAGTGCAA+AGG | - | chr3.2:80049266-80049285 | None:intergenic | 30.0% | |
| CAAAATGACAATTACCAAAC+GGG | - | chr3.2:80048657-80048676 | None:intergenic | 30.0% | |
| CAAATATATGCTCAAGATCA+AGG | - | chr3.2:80050429-80050448 | None:intergenic | 30.0% | |
| CAAATGCTGATAAAAACTTG+TGG | + | chr3.2:80048504-80048523 | MS.gene06427:intron | 30.0% | |
| CAATTAAATAACCTGGGTTA+GGG | - | chr3.2:80048336-80048355 | None:intergenic | 30.0% | |
| CAGACAAAATATATTCCTTC+AGG | - | chr3.2:80048580-80048599 | None:intergenic | 30.0% | |
| CATGCTTATAAGAAAGAAGA+TGG | + | chr3.2:80049101-80049120 | MS.gene06427:intron | 30.0% | |
| CATTGAAACTACTATTACCA+AGG | + | chr3.2:80047772-80047791 | MS.gene06427:CDS | 30.0% | |
| GTTTACACGATAAACTGTTA+GGG | + | chr3.2:80050506-80050525 | MS.gene06427:intron | 30.0% | |
| TAGGACTCAATTAAATAACC+TGG | - | chr3.2:80048343-80048362 | None:intergenic | 30.0% | |
| TCAATTAAATAACCTGGGTT+AGG | - | chr3.2:80048337-80048356 | None:intergenic | 30.0% | |
| TCTCATTGATAGAACTCAAA+TGG | + | chr3.2:80048413-80048432 | MS.gene06427:intron | 30.0% | |
| TTGAGGTGAAATTCATTGTT+TGG | + | chr3.2:80049543-80049562 | MS.gene06427:intron | 30.0% | |
| ! | ATCGTAATCGTATGCATTTT+CGG | + | chr3.2:80047813-80047832 | MS.gene06427:intron | 30.0% |
| ! | ATTTATCTAGCTTGACTACT+TGG | + | chr3.2:80050472-80050491 | MS.gene06427:intron | 30.0% |
| ! | CGATTTTCAACAGATAGTTT+AGG | - | chr3.2:80048362-80048381 | None:intergenic | 30.0% |
| ! | CTGATTGAATTTGAAGTGTT+TGG | - | chr3.2:80048876-80048895 | None:intergenic | 30.0% |
| ! | CTGGGTATGCAAATTTTAAA+TGG | + | chr3.2:80048003-80048022 | MS.gene06427:intron | 30.0% |
| ! | CTTCTATTGTTTCTTGTTCT+TGG | + | chr3.2:80048081-80048100 | MS.gene06427:intron | 30.0% |
| ! | TTATTTTCACGAGCTTATAG+TGG | + | chr3.2:80048692-80048711 | MS.gene06427:intron | 30.0% |
| !! | AGTCATTGTTATTTGTTTGC+TGG | + | chr3.2:80049974-80049993 | MS.gene06427:intron | 30.0% |
| !! | TGCACTCTATTTCTGTTATT+TGG | + | chr3.2:80049267-80049286 | MS.gene06427:intron | 30.0% |
| !! | TTTAAATGGACTGTGAAATG+TGG | + | chr3.2:80048017-80048036 | MS.gene06427:intron | 30.0% |
| !! | TTTTTCAATTAGGATTGCAG+GGG | - | chr3.2:80048781-80048800 | None:intergenic | 30.0% |
| !!! | ATTTTGATTTTAGGCTAAGG+AGG | + | chr3.2:80047877-80047896 | MS.gene06427:intron | 30.0% |
| AAACTGCATTAAATAACCCC+TGG | - | chr3.2:80048311-80048330 | None:intergenic | 35.0% | |
| AACTGTAACAAACATGCATG+TGG | - | chr3.2:80050318-80050337 | None:intergenic | 35.0% | |
| ACAAAGCCAAAGAACATCTA+CGG | - | chr3.2:80048994-80049013 | None:intergenic | 35.0% | |
| ATACTGATGAAAAACCACCA+GGG | + | chr3.2:80048291-80048310 | MS.gene06427:intron | 35.0% | |
| ATGATTAAAAAGGACCCGTT+TGG | + | chr3.2:80048640-80048659 | MS.gene06427:intron | 35.0% | |
| ATTAGAACTCGCGGTAAAAA+AGG | - | chr3.2:80049448-80049467 | None:intergenic | 35.0% | |
| CTTAAGTTAACGTTCTAACC+TGG | + | chr3.2:80049997-80050016 | MS.gene06427:intron | 35.0% | |
| GAGGGAATTCAAATACTTTG+AGG | + | chr3.2:80049526-80049545 | MS.gene06427:intron | 35.0% | |
| GTGTTTCAAAAGCAGATGAA+AGG | - | chr3.2:80049031-80049050 | None:intergenic | 35.0% | |
| TTAGGTGTTCCGTATATTTG+CGG | + | chr3.2:80049403-80049422 | MS.gene06427:intron | 35.0% | |
| TTCTCCTCGTTAGTATATCT+CGG | + | chr3.2:80049342-80049361 | MS.gene06427:intron | 35.0% | |
| ! | AAGCATTTGGATTTTCATCC+AGG | - | chr3.2:80050018-80050037 | None:intergenic | 35.0% |
| ! | ATTACTTTCAGGTGCTATGA+TGG | + | chr3.2:80049297-80049316 | MS.gene06427:intron | 35.0% |
| ! | GCTGATAAGCTAGCTTATAT+CGG | - | chr3.2:80048956-80048975 | None:intergenic | 35.0% |
| ! | TGGGGTCAAATTGCAAATTT+TGG | - | chr3.2:80049724-80049743 | None:intergenic | 35.0% |
| !! | AGCTAGCTTATAGTTGATAG+CGG | - | chr3.2:80048908-80048927 | None:intergenic | 35.0% |
| !! | TATCCATAGCCATGGTTTTA+TGG | - | chr3.2:80050394-80050413 | None:intergenic | 35.0% |
| !!! | ATCCATAGCCATGGTTTTAT+GGG | - | chr3.2:80050393-80050412 | None:intergenic | 35.0% |
| !!! | TCATTTTGATTGCCTTGGTT+CGG | + | chr3.2:80048465-80048484 | MS.gene06427:intron | 35.0% |
| AAAGCATGTTAACCTGAGCA+TGG | - | chr3.2:80047628-80047647 | None:intergenic | 40.0% | |
| AACAGACATTGTGTTGTGCA+GGG | + | chr3.2:80050684-80050703 | MS.gene06427:intron | 40.0% | |
| AACTCGCGGTAAAAAAGGAA+AGG | - | chr3.2:80049443-80049462 | None:intergenic | 40.0% | |
| AAGCAGATGAAAGGTGATGA+AGG | - | chr3.2:80049022-80049041 | None:intergenic | 40.0% | |
| ACTTCATCCAAACACACTCT+TGG | + | chr3.2:80049950-80049969 | MS.gene06427:intron | 40.0% | |
| ATTACCTGGGCTTCATAGTT+TGG | + | chr3.2:80050147-80050166 | MS.gene06427:intron | 40.0% | |
| CTTCATCCAAACACACTCTT+GGG | + | chr3.2:80049951-80049970 | MS.gene06427:intron | 40.0% | |
| GATACTGATGAAAAACCACC+AGG | + | chr3.2:80048290-80048309 | MS.gene06427:intron | 40.0% | |
| GTAACAAACATGCATGTGGA+AGG | - | chr3.2:80050314-80050333 | None:intergenic | 40.0% | |
| TAACCCCTTAAAACCTCCTA+TGG | - | chr3.2:80049386-80049405 | None:intergenic | 40.0% | |
| TACTGATGAAAAACCACCAG+GGG | + | chr3.2:80048292-80048311 | MS.gene06427:intron | 40.0% | |
| TAGAAGGCTTGCGGATAATA+TGG | + | chr3.2:80047901-80047920 | MS.gene06427:CDS | 40.0% | |
| TATGGTACAGCTTGGTAAAG+AGG | + | chr3.2:80047919-80047938 | MS.gene06427:CDS | 40.0% | |
| TCACAAGCTGTTTACAGAAC+TGG | + | chr3.2:80050583-80050602 | MS.gene06427:CDS | 40.0% | |
| TGATGAGTCCCATAAAACCA+TGG | + | chr3.2:80050382-80050401 | MS.gene06427:intron | 40.0% | |
| TGCAGAAAAGGTTGAGAAAC+TGG | - | chr3.2:80050175-80050194 | None:intergenic | 40.0% | |
| TGGCAAATTTATTCTCGACG+AGG | - | chr3.2:80049484-80049503 | None:intergenic | 40.0% | |
| TTAACCTGAGCATGGATAAC+CGG | - | chr3.2:80047620-80047639 | None:intergenic | 40.0% | |
| TTACCTGGGCTTCATAGTTT+GGG | + | chr3.2:80050148-80050167 | MS.gene06427:intron | 40.0% | |
| TTAGGATTGCAGGGGTAAAA+TGG | - | chr3.2:80048773-80048792 | None:intergenic | 40.0% | |
| TTCATAGTGCTTGTGCGTTT+GGG | + | chr3.2:80050265-80050284 | MS.gene06427:intron | 40.0% | |
| TTTAGGCTAAGGAGGTTAGA+AGG | + | chr3.2:80047885-80047904 | MS.gene06427:intron | 40.0% | |
| ! | ACTGGTTTAAGTTCCGAAAG+AGG | + | chr3.2:80048218-80048237 | MS.gene06427:intron | 40.0% |
| ! | ATGGGAACTAATGGTGGAAA+AGG | - | chr3.2:80050363-80050382 | None:intergenic | 40.0% |
| ! | GACTACATGTTTTGTGAGAG+TGG | - | chr3.2:80049069-80049088 | None:intergenic | 40.0% |
| ! | TGGGAACTAATGGTGGAAAA+GGG | - | chr3.2:80050362-80050381 | None:intergenic | 40.0% |
| !! | AGTTTGTTTTCACCTCAGTC+AGG | + | chr3.2:80050225-80050244 | MS.gene06427:intron | 40.0% |
| !! | GGTTTTATGGGACTCATCAT+GGG | - | chr3.2:80050381-80050400 | None:intergenic | 40.0% |
| !! | GTTTGTTTTCACCTCAGTCA+GGG | + | chr3.2:80050226-80050245 | MS.gene06427:intron | 40.0% |
| !! | TACAAGGTGCCGCAAATATA+CGG | - | chr3.2:80049415-80049434 | None:intergenic | 40.0% |
| !! | TTTGTTTTCACCTCAGTCAG+GGG | + | chr3.2:80050227-80050246 | MS.gene06427:intron | 40.0% |
| !!! | AGGCATCATTTTGATTGCCT+TGG | + | chr3.2:80048460-80048479 | MS.gene06427:intron | 40.0% |
| !!! | ATAGGAGGTTTTAAGGGGTT+AGG | + | chr3.2:80049385-80049404 | MS.gene06427:intron | 40.0% |
| !!! | TGGTTTTATGGGACTCATCA+TGG | - | chr3.2:80050382-80050401 | None:intergenic | 40.0% |
| ACAGAGCCGTAGATGTTCTT+TGG | + | chr3.2:80048985-80049004 | MS.gene06427:intron | 45.0% | |
| AGAACATCTACGGCTCTGTT+TGG | - | chr3.2:80048984-80049003 | None:intergenic | 45.0% | |
| ATTCCTTCAGGAAAACGGAC+AGG | - | chr3.2:80048568-80048587 | None:intergenic | 45.0% | |
| CTCATCATGGGAACTAATGG+TGG | - | chr3.2:80050369-80050388 | None:intergenic | 45.0% | |
| CTGCATTAAATAACCCCTGG+TGG | - | chr3.2:80048308-80048327 | None:intergenic | 45.0% | |
| CTTCATAGTGCTTGTGCGTT+TGG | + | chr3.2:80050264-80050283 | MS.gene06427:intron | 45.0% | |
| GAACAGACATTGTGTTGTGC+AGG | + | chr3.2:80050683-80050702 | MS.gene06427:intron | 45.0% | |
| GAGACCGAGATATACTAACG+AGG | - | chr3.2:80049349-80049368 | None:intergenic | 45.0% | |
| GCGGATAATATGGTACAGCT+TGG | + | chr3.2:80047911-80047930 | MS.gene06427:CDS | 45.0% | |
| GGACTCATCATGGGAACTAA+TGG | - | chr3.2:80050372-80050391 | None:intergenic | 45.0% | |
| GTATATCTCGGTCTCAACAC+CGG | + | chr3.2:80049354-80049373 | MS.gene06427:intron | 45.0% | |
| GTCCCATAAAACCATGGCTA+TGG | + | chr3.2:80050388-80050407 | MS.gene06427:intron | 45.0% | |
| TAAGGAGGTTAGAAGGCTTG+CGG | + | chr3.2:80047892-80047911 | MS.gene06427:CDS | 45.0% | |
| TACCTGGGCTTCATAGTTTG+GGG | + | chr3.2:80050149-80050168 | MS.gene06427:intron | 45.0% | |
| TAGAACCATGGTCTCGCAAT+TGG | + | chr3.2:80047736-80047755 | MS.gene06427:intron | 45.0% | |
| TCAATCGAGATACGTCTCAC+CGG | + | chr3.2:80047598-80047617 | MS.gene06427:CDS | 45.0% | |
| TGCAACACTATACCGAACCA+AGG | - | chr3.2:80048480-80048499 | None:intergenic | 45.0% | |
| ! | ATCGAACTGGTGGATACACT+AGG | + | chr3.2:80050707-80050726 | MS.gene06427:CDS | 45.0% |
| ! | ATGACTCCCAAGAGTGTGTT+TGG | - | chr3.2:80049960-80049979 | None:intergenic | 45.0% |
| ! | ATGCAGTTTTTCCCTAACCC+AGG | + | chr3.2:80048322-80048341 | MS.gene06427:intron | 45.0% |
| ! | GTTTTGTGAGAGTGGATGCA+TGG | - | chr3.2:80049061-80049080 | None:intergenic | 45.0% |
| ! | TCGAACTGGTGGATACACTA+GGG | + | chr3.2:80050708-80050727 | MS.gene06427:CDS | 45.0% |
| ! | TCTCGCCATAGGAGGTTTTA+AGG | + | chr3.2:80049378-80049397 | MS.gene06427:intron | 45.0% |
| ! | TTTCAGGTGCTATGATGGTG+AGG | + | chr3.2:80049302-80049321 | MS.gene06427:intron | 45.0% |
| !! | CTCGCCATAGGAGGTTTTAA+GGG | + | chr3.2:80049379-80049398 | MS.gene06427:intron | 45.0% |
| !! | GCAAGAAGCATTAGAACTCG+CGG | - | chr3.2:80049457-80049476 | None:intergenic | 45.0% |
| !!! | TCGCCATAGGAGGTTTTAAG+GGG | + | chr3.2:80049380-80049399 | MS.gene06427:intron | 45.0% |
| AAACCTCCTATGGCGAGATC+CGG | - | chr3.2:80049376-80049395 | None:intergenic | 50.0% | |
| CAGCGAAGTGAGTGCAGAAA+AGG | - | chr3.2:80050187-80050206 | None:intergenic | 50.0% | |
| TTCACCTCAGTCAGGGGATA+TGG | + | chr3.2:80050233-80050252 | MS.gene06427:intron | 50.0% | |
| ! | AGTCAGGGGATATGGCTTGT+GGG | + | chr3.2:80050241-80050260 | MS.gene06427:intron | 50.0% |
| ! | GTGGATACACTAGGGTGCTA+CGG | + | chr3.2:80050716-80050735 | MS.gene06427:CDS | 50.0% |
| !! | AGTTGGTGATGCTGCACCAA+TGG | + | chr3.2:80050750-80050769 | MS.gene06427:CDS | 50.0% |
| AGCACGCCTTGCAGCACATA+CGG | - | chr3.2:80050534-80050553 | None:intergenic | 55.0% | |
| AGGGATCCGTATGTGCTGCA+AGG | + | chr3.2:80050525-80050544 | MS.gene06427:intron | 55.0% | |
| CAAGCCATATCCCCTGACTG+AGG | - | chr3.2:80050240-80050259 | None:intergenic | 55.0% | |
| CAATGGTGACAGTGCGACAC+TGG | + | chr3.2:80050048-80050067 | MS.gene06427:intron | 55.0% | |
| CAGTCAGGGGATATGGCTTG+TGG | + | chr3.2:80050240-80050259 | MS.gene06427:intron | 55.0% | |
| CCATGGTCTCGCAATTGGTG+AGG | + | chr3.2:80047741-80047760 | MS.gene06427:CDS | 55.0% | |
| CCTCACCAATTGCGAGACCA+TGG | - | chr3.2:80047744-80047763 | None:intergenic | 55.0% | |
| CCTTCAGGAAAACGGACAGG+AGG | - | chr3.2:80048565-80048584 | None:intergenic | 55.0% | |
| CTACGGACTCGCATTCGAGT+TGG | + | chr3.2:80050733-80050752 | MS.gene06427:CDS | 55.0% | |
| GTGAGGCAGGGATATGCTTG+CGG | + | chr3.2:80049319-80049338 | MS.gene06427:intron | 55.0% | |
| GTGTTGTGCAGGGATCGAAC+TGG | + | chr3.2:80050694-80050713 | MS.gene06427:intron | 55.0% | |
| TCAACACCGGATCTCGCCAT+AGG | + | chr3.2:80049367-80049386 | MS.gene06427:intron | 55.0% | |
| TTGTGCAGGGATCGAACTGG+TGG | + | chr3.2:80050697-80050716 | MS.gene06427:intron | 55.0% | |
| ! | AGGTGCTATGATGGTGAGGC+AGG | + | chr3.2:80049306-80049325 | MS.gene06427:intron | 55.0% |
| ! | CCTCCTGTCCGTTTTCCTGA+AGG | + | chr3.2:80048562-80048581 | MS.gene06427:intron | 55.0% |
| ! | CTCACCGGTTATCCATGCTC+AGG | + | chr3.2:80047613-80047632 | MS.gene06427:CDS | 55.0% |
| ! | GGTGCTATGATGGTGAGGCA+GGG | + | chr3.2:80049307-80049326 | MS.gene06427:intron | 55.0% |
| ACACCGGATCTCGCCATAGG+AGG | + | chr3.2:80049370-80049389 | MS.gene06427:intron | 60.0% | |
| GGCCCCAAACTATGAAGCCC+AGG | - | chr3.2:80050154-80050173 | None:intergenic | 60.0% | |
| ! | CGTGCTGCTAGTTTCGTGCG+AGG | + | chr3.2:80050548-80050567 | MS.gene06427:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 80047579 | 80050782 | 80047579 | ID=MS.gene06427 |
| chr3.2 | mRNA | 80047579 | 80050782 | 80047579 | ID=MS.gene06427.t1;Parent=MS.gene06427 |
| chr3.2 | exon | 80047579 | 80047634 | 80047579 | ID=MS.gene06427.t1.exon1;Parent=MS.gene06427.t1 |
| chr3.2 | CDS | 80047579 | 80047634 | 80047579 | ID=cds.MS.gene06427.t1;Parent=MS.gene06427.t1 |
| chr3.2 | exon | 80047739 | 80047793 | 80047739 | ID=MS.gene06427.t1.exon2;Parent=MS.gene06427.t1 |
| chr3.2 | CDS | 80047739 | 80047793 | 80047739 | ID=cds.MS.gene06427.t1;Parent=MS.gene06427.t1 |
| chr3.2 | exon | 80047890 | 80047940 | 80047890 | ID=MS.gene06427.t1.exon3;Parent=MS.gene06427.t1 |
| chr3.2 | CDS | 80047890 | 80047940 | 80047890 | ID=cds.MS.gene06427.t1;Parent=MS.gene06427.t1 |
| chr3.2 | exon | 80050527 | 80050618 | 80050527 | ID=MS.gene06427.t1.exon4;Parent=MS.gene06427.t1 |
| chr3.2 | CDS | 80050527 | 80050618 | 80050527 | ID=cds.MS.gene06427.t1;Parent=MS.gene06427.t1 |
| chr3.2 | exon | 80050705 | 80050782 | 80050705 | ID=MS.gene06427.t1.exon5;Parent=MS.gene06427.t1 |
| chr3.2 | CDS | 80050705 | 80050782 | 80050705 | ID=cds.MS.gene06427.t1;Parent=MS.gene06427.t1 |
| Gene Sequence |
| Protein sequence |
