Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015732.t1 | XP_003630831.2 | 98.2 | 111 | 2 | 0 | 1 | 111 | 1 | 111 | 1.20E-51 | 212.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015732.t1 | A0L5Z9 | 56.5 | 108 | 46 | 1 | 5 | 111 | 8 | 115 | 1.0e-27 | 124.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015732.t1 | G7L907 | 98.2 | 111 | 2 | 0 | 1 | 111 | 1 | 111 | 8.7e-52 | 212.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene015732 | MS.gene001444 | PPI |
| MS.gene015732 | MS.gene005865 | PPI |
| MS.gene015732 | MS.gene001446 | PPI |
| MS.gene015732 | MS.gene026968 | PPI |
| MS.gene015732 | MS.gene04780 | PPI |
| MS.gene34167 | MS.gene015732 | PPI |
| MS.gene015732 | MS.gene028903 | PPI |
| MS.gene015732 | MS.gene055808 | PPI |
| MS.gene05937 | MS.gene015732 | PPI |
| MS.gene013330 | MS.gene015732 | PPI |
| MS.gene015732 | MS.gene82915 | PPI |
| MS.gene60589 | MS.gene015732 | PPI |
| MS.gene001444 | MS.gene015732 | PPI |
| MS.gene015732 | MS.gene001687 | PPI |
| MS.gene015732 | MS.gene06427 | PPI |
| MS.gene015732 | MS.gene30981 | PPI |
| MS.gene015732 | MS.gene043435 | PPI |
| MS.gene015732 | MS.gene60861 | PPI |
| MS.gene31468 | MS.gene015732 | PPI |
| MS.gene049140 | MS.gene015732 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015732.t1 | MTR_8g103900 | 98.198 | 111 | 2 | 0 | 1 | 111 | 1 | 111 | 1.32e-77 | 226 |
| MS.gene015732.t1 | MTR_3g095900 | 97.297 | 111 | 3 | 0 | 1 | 111 | 1 | 111 | 3.17e-77 | 225 |
| MS.gene015732.t1 | MTR_3g062930 | 44.037 | 109 | 61 | 0 | 3 | 111 | 104 | 212 | 4.50e-28 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene015732.t1 | AT5G09770 | 85.586 | 111 | 16 | 0 | 1 | 111 | 1 | 111 | 3.31e-68 | 202 |
| MS.gene015732.t1 | AT5G64650 | 85.586 | 111 | 16 | 0 | 1 | 111 | 1 | 111 | 5.86e-68 | 201 |
| MS.gene015732.t1 | AT3G54210 | 45.283 | 106 | 58 | 0 | 6 | 111 | 104 | 209 | 2.23e-28 | 102 |
Find 30 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTAGGCTAAGGAGGTTAGA+AGG | 0.294585 | 4.3:-1960747 | MS.gene015732:intron |
| TAGAAGGGTTGCAGATAATA+TGG | 0.357326 | 4.3:-1960731 | MS.gene015732:CDS |
| TGTTTACAGAACTGGCTTAT+CGG | 0.376930 | 4.3:-1958719 | MS.gene015732:CDS |
| TCACAAGCTGTTTACAGAAC+TGG | 0.397878 | 4.3:-1958727 | MS.gene015732:CDS |
| TCGATTCAGCTTCCTGAACT+TGG | 0.412475 | 4.3:+1961054 | None:intergenic |
| CTGAGAAAATGACCAAGTTC+AGG | 0.415630 | 4.3:-1961066 | None:intergenic |
| ATAGAACTGGTGGATATACT+AGG | 0.438895 | 4.3:-1958604 | MS.gene015732:CDS |
| TTAGGCTAAGGAGGTTAGAA+GGG | 0.463555 | 4.3:-1960746 | MS.gene015732:intron |
| AGCTCGCCTTGCAGCACATA+CGG | 0.485413 | 4.3:+1958779 | None:intergenic |
| TTAACCTGAGCATGGATATC+CGG | 0.493435 | 4.3:+1961020 | None:intergenic |
| AACAGAGATTTACTCAATAT+AGG | 0.495924 | 4.3:+1958538 | None:intergenic |
| GTGGATATACTAGGGTGTTA+CGG | 0.513509 | 4.3:-1958595 | MS.gene015732:CDS |
| TATGGTACAGCTTGGTAAAG+AGG | 0.517654 | 4.3:-1960713 | MS.gene015732:intron |
| TAGAACCATGGTCTCGCAGT+TGG | 0.542039 | 4.3:-1960910 | MS.gene015732:CDS |
| TGAATCGAGAAACGTCTCAC+CGG | 0.546451 | 4.3:-1961039 | MS.gene015732:CDS |
| TTGTTATTTATTTAGAACCA+TGG | 0.549464 | 4.3:-1960922 | MS.gene015732:intron |
| ATTTACTCAATATAGGCCAT+TGG | 0.558368 | 4.3:+1958545 | None:intergenic |
| TTACGGACTCGCATTCGAGT+TGG | 0.558431 | 4.3:-1958578 | MS.gene015732:CDS |
| CTCACCGGATATCCATGCTC+AGG | 0.569855 | 4.3:-1961024 | MS.gene015732:intron |
| AGTTGGTGATGCTGCACCAA+TGG | 0.577706 | 4.3:-1958561 | MS.gene015732:CDS |
| CCATGGTCTCGCAGTTGGTG+AGG | 0.580724 | 4.3:-1960905 | MS.gene015732:CDS |
| CATTGAAACTACTATTACCA+AGG | 0.585744 | 4.3:-1960874 | MS.gene015732:intron |
| GCAGATAATATGGTACAGCT+TGG | 0.590005 | 4.3:-1960721 | MS.gene015732:CDS |
| CCTCACCAACTGCGAGACCA+TGG | 0.601685 | 4.3:+1960905 | None:intergenic |
| TAGAACTGGTGGATATACTA+GGG | 0.605628 | 4.3:-1958603 | MS.gene015732:CDS |
| AAAGCATGTTAACCTGAGCA+TGG | 0.605726 | 4.3:+1961012 | None:intergenic |
| AGGGATCCGTATGTGCTGCA+AGG | 0.620707 | 4.3:-1958785 | MS.gene015732:CDS |
| GTGTTGTGCAGAGATAGAAC+TGG | 0.623312 | 4.3:-1958617 | MS.gene015732:intron |
| TTGTGCAGAGATAGAACTGG+TGG | 0.666108 | 4.3:-1958614 | MS.gene015732:intron |
| CGAGCTGCTAGTTTCGTGCG+AGG | 0.670232 | 4.3:-1958762 | MS.gene015732:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGGTTTAAAAAATATATATT+GGG | + | chr4.3:1959019-1959038 | None:intergenic | 10.0% |
| !! | AAGGAAGAAAAAAAAAAAAA+AGG | + | chr4.3:1958637-1958656 | None:intergenic | 15.0% |
| !! | CTGGTTTAAAAAATATATAT+TGG | + | chr4.3:1959020-1959039 | None:intergenic | 15.0% |
| !! | TAATTTATATTACATTACCT+TGG | + | chr4.3:1958751-1958770 | None:intergenic | 15.0% |
| !! | AACAAAAGTAGAGAAAAATA+AGG | + | chr4.3:1960155-1960174 | None:intergenic | 20.0% |
| !! | AATGCTTGAAATATAAAGAA+TGG | - | chr4.3:1960256-1960275 | MS.gene015732:intron | 20.0% |
| !! | AGAAAAAAAAAAAAAAGGCA+TGG | + | chr4.3:1958632-1958651 | None:intergenic | 20.0% |
| !! | ATATTATAACTACTAATCAG+CGG | - | chr4.3:1959750-1959769 | MS.gene015732:intron | 20.0% |
| !! | GAATTTAAATTAAAGTTTGC+TGG | - | chr4.3:1958822-1958841 | MS.gene015732:intron | 20.0% |
| !! | TAATGAACTGGATAAAAATA+TGG | - | chr4.3:1959422-1959441 | MS.gene015732:intron | 20.0% |
| !!! | ATTTTTCTCTACTTTTGTTT+TGG | - | chr4.3:1960156-1960175 | MS.gene015732:intron | 20.0% |
| !!! | GAAAAAAAAAAAAAAGGCAT+GGG | + | chr4.3:1958631-1958650 | None:intergenic | 20.0% |
| !!! | TTGTTATTTATTTAGAACCA+TGG | - | chr4.3:1958683-1958702 | MS.gene015732:intron | 20.0% |
| ! | AAAGTAGAGAAAAATAAGGA+AGG | + | chr4.3:1960151-1960170 | None:intergenic | 25.0% |
| ! | AAGAACAATTAACTTAATGC+AGG | - | chr4.3:1960298-1960317 | MS.gene015732:intron | 25.0% |
| ! | AATATATATTGGGTGATCAA+TGG | + | chr4.3:1959009-1959028 | None:intergenic | 25.0% |
| ! | AGAACAATTAACTTAATGCA+GGG | - | chr4.3:1960299-1960318 | MS.gene015732:intron | 25.0% |
| ! | AGTTTACACGATAAATTGTT+AGG | - | chr4.3:1960800-1960819 | MS.gene015732:intron | 25.0% |
| ! | ATAAAAAATATCCATAGCCA+TGG | + | chr4.3:1960697-1960716 | None:intergenic | 25.0% |
| ! | ATAAATGTTGAGTAAATCAG+TGG | - | chr4.3:1959666-1959685 | MS.gene015732:intron | 25.0% |
| ! | ATCTTGAGCATAAATTTGAT+AGG | - | chr4.3:1960726-1960745 | MS.gene015732:CDS | 25.0% |
| ! | GTTTACACGATAAATTGTTA+GGG | - | chr4.3:1960801-1960820 | MS.gene015732:intron | 25.0% |
| ! | TAAATGTTGAGTAAATCAGT+GGG | - | chr4.3:1959667-1959686 | MS.gene015732:intron | 25.0% |
| ! | TATTATAACTACTAATCAGC+GGG | - | chr4.3:1959751-1959770 | MS.gene015732:intron | 25.0% |
| ! | TTAAAAGAAAGCAGTTATGT+AGG | + | chr4.3:1960414-1960433 | None:intergenic | 25.0% |
| ! | TTAAGATCCATTTAGTAAAC+TGG | - | chr4.3:1960340-1960359 | MS.gene015732:intron | 25.0% |
| ! | TTACTCAACATTTATCTTCA+GGG | + | chr4.3:1959661-1959680 | None:intergenic | 25.0% |
| ! | TTTACTCAACATTTATCTTC+AGG | + | chr4.3:1959662-1959681 | None:intergenic | 25.0% |
| !! | AATTTGATCCTATGCATTTT+CGG | - | chr4.3:1958771-1958790 | MS.gene015732:CDS | 25.0% |
| !! | ACTGGATAAAAATATGGTTT+TGG | - | chr4.3:1959428-1959447 | MS.gene015732:intron | 25.0% |
| !! | AGTAGTTGATATTTGTTTGT+TGG | - | chr4.3:1960199-1960218 | MS.gene015732:intron | 25.0% |
| !! | GTTTAAGTTCAAAAAGTAAG+AGG | - | chr4.3:1959620-1959639 | MS.gene015732:intron | 25.0% |
| !! | TATTGATAGTAGCATATTAG+AGG | + | chr4.3:1960112-1960131 | None:intergenic | 25.0% |
| !!! | CAAACAATATTTTTTCAACC+TGG | - | chr4.3:1959598-1959617 | MS.gene015732:intron | 25.0% |
| !!! | CTGGTTGTAATTTTGATTTT+AGG | - | chr4.3:1958841-1958860 | MS.gene015732:intron | 25.0% |
| !!! | GTAATTTTGATTTTAGGCTA+AGG | - | chr4.3:1958847-1958866 | MS.gene015732:intron | 25.0% |
| !!! | TGGTTGTTTGATTACTTTTA+GGG | - | chr4.3:1960176-1960195 | MS.gene015732:intron | 25.0% |
| !!! | TTACTTTTTGAACTTAAACC+AGG | + | chr4.3:1959619-1959638 | None:intergenic | 25.0% |
| !!! | TTGGTTGTTTGATTACTTTT+AGG | - | chr4.3:1960175-1960194 | MS.gene015732:intron | 25.0% |
| ACGGAAATAAAACACAAATG+AGG | + | chr4.3:1960463-1960482 | None:intergenic | 30.0% | |
| CAAATTTATGCTCAAGATCA+AGG | + | chr4.3:1960724-1960743 | None:intergenic | 30.0% | |
| CAGTATTCAAAAGTCATGTT+GGG | - | chr4.3:1959037-1959056 | MS.gene015732:intron | 30.0% | |
| CATTGAAACTACTATTACCA+AGG | - | chr4.3:1958731-1958750 | MS.gene015732:CDS | 30.0% | |
| GTAAGAGGTTTGAAAAATGT+CGG | - | chr4.3:1959635-1959654 | MS.gene015732:intron | 30.0% | |
| TAATCATAGCACAAGTAAGA+CGG | + | chr4.3:1958951-1958970 | None:intergenic | 30.0% | |
| TCCTATTCAACAGATAGTTT+GGG | + | chr4.3:1959902-1959921 | None:intergenic | 30.0% | |
| TGAATACTGATGAAAGATCA+GGG | - | chr4.3:1959774-1959793 | MS.gene015732:intron | 30.0% | |
| TTCTTAAACCGAAAATGCAT+AGG | + | chr4.3:1958782-1958801 | None:intergenic | 30.0% | |
| ! | AAAAAAAAAAAAGGCATGGG+AGG | + | chr4.3:1958628-1958647 | None:intergenic | 30.0% |
| ! | AACTTTTGCAGAACAGATTT+TGG | + | chr4.3:1959925-1959944 | None:intergenic | 30.0% |
| ! | ATTTATCTAGCTTGACTACT+TGG | - | chr4.3:1960767-1960786 | MS.gene015732:intron | 30.0% |
| ! | CGTTTAGTGCTTTTACATTT+GGG | - | chr4.3:1960480-1960499 | MS.gene015732:intron | 30.0% |
| ! | GTTTCTCTTGTAGTTTTTCT+AGG | + | chr4.3:1959381-1959400 | None:intergenic | 30.0% |
| ! | TCTACCATCTTTTCTACAAT+AGG | + | chr4.3:1959185-1959204 | None:intergenic | 30.0% |
| !! | CCAAATGTAAAAGCACTAAA+CGG | + | chr4.3:1960482-1960501 | None:intergenic | 30.0% |
| !!! | ATTTTGATTTTAGGCTAAGG+AGG | - | chr4.3:1958850-1958869 | MS.gene015732:intron | 30.0% |
| AACTGAGGCAATCAGTATAA+TGG | + | chr4.3:1960020-1960039 | None:intergenic | 35.0% | |
| AACTGTAACAAACATGCATG+TGG | + | chr4.3:1960613-1960632 | None:intergenic | 35.0% | |
| AATATAAAGAATGGCGACAC+TGG | - | chr4.3:1960265-1960284 | MS.gene015732:intron | 35.0% | |
| AGATGGTAGAAACAAGACTT+AGG | - | chr4.3:1959195-1959214 | MS.gene015732:intron | 35.0% | |
| AGCACCTATTGTAGAAAAGA+TGG | - | chr4.3:1959178-1959197 | MS.gene015732:intron | 35.0% | |
| CCAGTATTCAAAAGTCATGT+TGG | - | chr4.3:1959036-1959055 | MS.gene015732:intron | 35.0% | |
| CGCATATCTTATTCTTGTGT+TGG | + | chr4.3:1959087-1959106 | None:intergenic | 35.0% | |
| CTTAAGTTAACGTTCTAACG+TGG | - | chr4.3:1960222-1960241 | MS.gene015732:intron | 35.0% | |
| GAATACTGATGAAAGATCAG+GGG | - | chr4.3:1959775-1959794 | MS.gene015732:intron | 35.0% | |
| GATCAATGGTAAAGAATGAG+AGG | + | chr4.3:1958995-1959014 | None:intergenic | 35.0% | |
| GGATCTAGAGATTAATGAAC+TGG | - | chr4.3:1959410-1959429 | MS.gene015732:intron | 35.0% | |
| GTCCTATTCAACAGATAGTT+TGG | + | chr4.3:1959903-1959922 | None:intergenic | 35.0% | |
| GTGAATACTGATGAAAGATC+AGG | - | chr4.3:1959773-1959792 | MS.gene015732:intron | 35.0% | |
| TACAAGAGAAACTATCGAGA+AGG | - | chr4.3:1959389-1959408 | MS.gene015732:intron | 35.0% | |
| TAGAAGGGTTGCAGATAATA+TGG | - | chr4.3:1958874-1958893 | MS.gene015732:intron | 35.0% | |
| TCCCAAACTATCTGTTGAAT+AGG | - | chr4.3:1959898-1959917 | MS.gene015732:intron | 35.0% | |
| TGAACCAACTAATTGAGAGA+GGG | + | chr4.3:1959848-1959867 | None:intergenic | 35.0% | |
| TGATAGAACCAACACTAGAT+AGG | - | chr4.3:1959153-1959172 | MS.gene015732:intron | 35.0% | |
| TGATGTCTCCAATAAAACCA+TGG | - | chr4.3:1960677-1960696 | MS.gene015732:intron | 35.0% | |
| TGCAGAAAAGATTGAGAAAC+AGG | + | chr4.3:1960391-1960410 | None:intergenic | 35.0% | |
| TTGAACCAACTAATTGAGAG+AGG | + | chr4.3:1959849-1959868 | None:intergenic | 35.0% | |
| ! | ATAGAACTGGTGGATATACT+AGG | - | chr4.3:1961001-1961020 | MS.gene015732:intron | 35.0% |
| ! | CCAACATGACTTTTGAATAC+TGG | + | chr4.3:1959039-1959058 | None:intergenic | 35.0% |
| ! | CCGTTTAGTGCTTTTACATT+TGG | - | chr4.3:1960479-1960498 | MS.gene015732:intron | 35.0% |
| ! | TAGAACTGGTGGATATACTA+GGG | - | chr4.3:1961002-1961021 | MS.gene015732:intron | 35.0% |
| ! | TGTTTACAGAACTGGCTTAT+CGG | - | chr4.3:1960886-1960905 | MS.gene015732:CDS | 35.0% |
| ! | TTATACTGATTGCCTCAGTT+CGG | - | chr4.3:1960020-1960039 | MS.gene015732:intron | 35.0% |
| ! | TTATGGATTTTCCGCTAACT+CGG | - | chr4.3:1959803-1959822 | MS.gene015732:intron | 35.0% |
| !! | AAAGATCAGGGGTTAGTTTA+TGG | - | chr4.3:1959786-1959805 | MS.gene015732:intron | 35.0% |
| !!! | ATCCATAGCCATGGTTTTAT+TGG | + | chr4.3:1960688-1960707 | None:intergenic | 35.0% |
| !!! | TGGTTTTATTGGAGACATCA+TGG | + | chr4.3:1960677-1960696 | None:intergenic | 35.0% |
| !!! | TGGTTTTGGATAGAACACTA+TGG | - | chr4.3:1959442-1959461 | MS.gene015732:intron | 35.0% |
| AAAGCATGTTAACCTGAGCA+TGG | + | chr4.3:1958596-1958615 | None:intergenic | 40.0% | |
| AAGGAGCAAGTGGAAGAAAT+AGG | + | chr4.3:1959289-1959308 | None:intergenic | 40.0% | |
| ACATCTAGAAAGAAGACCTG+TGG | - | chr4.3:1959226-1959245 | MS.gene015732:intron | 40.0% | |
| AGAAAGAAGACCTGTGGTAA+AGG | - | chr4.3:1959232-1959251 | MS.gene015732:intron | 40.0% | |
| AGTAGCCACAGTTCAGAATT+TGG | + | chr4.3:1958660-1958679 | None:intergenic | 40.0% | |
| ATATTGATGAAAGACCGCCA+GGG | - | chr4.3:1959693-1959712 | MS.gene015732:intron | 40.0% | |
| ATGTTGAGTAAATCAGTGGG+TGG | - | chr4.3:1959670-1959689 | MS.gene015732:intron | 40.0% | |
| CTCCAATAAAACCATGGCTA+TGG | - | chr4.3:1960683-1960702 | MS.gene015732:intron | 40.0% | |
| GAAACAAGACTTAGGTGGTT+TGG | - | chr4.3:1959203-1959222 | MS.gene015732:intron | 40.0% | |
| GCAGATAATATGGTACAGCT+TGG | - | chr4.3:1958884-1958903 | MS.gene015732:intron | 40.0% | |
| GTAACAAACATGCATGTGGA+AGG | + | chr4.3:1960609-1960628 | None:intergenic | 40.0% | |
| GTGTGCTCCAGTTTACTAAA+TGG | + | chr4.3:1960350-1960369 | None:intergenic | 40.0% | |
| TATGGTACAGCTTGGTAAAG+AGG | - | chr4.3:1958892-1958911 | MS.gene015732:intron | 40.0% | |
| TCACAAGCTGTTTACAGAAC+TGG | - | chr4.3:1960878-1960897 | MS.gene015732:CDS | 40.0% | |
| TCCTTCCAAATTCTGAACTG+TGG | - | chr4.3:1958652-1958671 | MS.gene015732:intron | 40.0% | |
| TGGTAGAAACAAGACTTAGG+TGG | - | chr4.3:1959198-1959217 | MS.gene015732:intron | 40.0% | |
| TTAACCTGAGCATGGATATC+CGG | + | chr4.3:1958588-1958607 | None:intergenic | 40.0% | |
| TTAGGCTAAGGAGGTTAGAA+GGG | - | chr4.3:1958859-1958878 | MS.gene015732:intron | 40.0% | |
| TTCTCCCTCTCTCAATTAGT+TGG | - | chr4.3:1959841-1959860 | MS.gene015732:intron | 40.0% | |
| TTTAGGCTAAGGAGGTTAGA+AGG | - | chr4.3:1958858-1958877 | MS.gene015732:intron | 40.0% | |
| TTTAGTAAACTGGAGCACAC+AGG | - | chr4.3:1960350-1960369 | MS.gene015732:intron | 40.0% | |
| ! | AAAAAAAGGCATGGGAGGAT+TGG | + | chr4.3:1958623-1958642 | None:intergenic | 40.0% |
| ! | AAGAAATAGGTGCTATCCAC+AGG | + | chr4.3:1959276-1959295 | None:intergenic | 40.0% |
| ! | ATGGCAACTAATGGTGGAAA+AGG | + | chr4.3:1960658-1960677 | None:intergenic | 40.0% |
| ! | CAGAGATGAGGATGTTACTT+TGG | - | chr4.3:1959110-1959129 | MS.gene015732:intron | 40.0% |
| ! | GTGGATATACTAGGGTGTTA+CGG | - | chr4.3:1961010-1961029 | MS.gene015732:intron | 40.0% |
| ! | TCTAGGTTTTCCTTTACCAC+AGG | + | chr4.3:1959245-1959264 | None:intergenic | 40.0% |
| ! | TGGCAACTAATGGTGGAAAA+GGG | + | chr4.3:1960657-1960676 | None:intergenic | 40.0% |
| !! | ACTATGTTTTAAACCCCTGG+CGG | + | chr4.3:1959710-1959729 | None:intergenic | 40.0% |
| !! | AGGATGTTACTTTGGATGTG+TGG | - | chr4.3:1959118-1959137 | MS.gene015732:intron | 40.0% |
| !! | CTGACTATGTTTTAAACCCC+TGG | + | chr4.3:1959713-1959732 | None:intergenic | 40.0% |
| !! | TCTACCTCTAGGCTTTGTTT+GGG | + | chr4.3:1959352-1959371 | None:intergenic | 40.0% |
| !!! | GAGGGTTTTGGAAAAAAGGA+AGG | + | chr4.3:1959308-1959327 | None:intergenic | 40.0% |
| AACTCCCAAACAAAGCCTAG+AGG | - | chr4.3:1959345-1959364 | MS.gene015732:intron | 45.0% | |
| AGATATGCGTAGCAGAGATG+AGG | - | chr4.3:1959098-1959117 | MS.gene015732:intron | 45.0% | |
| AGCACACAGGCTTCATAGTT+TGG | - | chr4.3:1960363-1960382 | MS.gene015732:intron | 45.0% | |
| ATGTAGCTGATCCCACTTAG+TGG | - | chr4.3:1959478-1959497 | MS.gene015732:intron | 45.0% | |
| CTAGGTCTTTCTCTACCTCT+AGG | + | chr4.3:1959363-1959382 | None:intergenic | 45.0% | |
| GACATCATGGCAACTAATGG+TGG | + | chr4.3:1960664-1960683 | None:intergenic | 45.0% | |
| GATATTGATGAAAGACCGCC+AGG | - | chr4.3:1959692-1959711 | MS.gene015732:intron | 45.0% | |
| GCCACAGTTCAGAATTTGGA+AGG | + | chr4.3:1958656-1958675 | None:intergenic | 45.0% | |
| GGAAAAAAGGAAGGAGCAAG+TGG | + | chr4.3:1959299-1959318 | None:intergenic | 45.0% | |
| GGAGACATCATGGCAACTAA+TGG | + | chr4.3:1960667-1960686 | None:intergenic | 45.0% | |
| GTGTTGTGCAGAGATAGAAC+TGG | - | chr4.3:1960988-1961007 | MS.gene015732:intron | 45.0% | |
| TATTGATGAAAGACCGCCAG+GGG | - | chr4.3:1959694-1959713 | MS.gene015732:intron | 45.0% | |
| TCATGTTGGGAGCAGAATGT+TGG | - | chr4.3:1959050-1959069 | MS.gene015732:intron | 45.0% | |
| TCGATTCAGCTTCCTGAACT+TGG | + | chr4.3:1958554-1958573 | None:intergenic | 45.0% | |
| TGAATCGAGAAACGTCTCAC+CGG | - | chr4.3:1958566-1958585 | MS.gene015732:CDS | 45.0% | |
| TGATCCCACTTAGTGGGATA+AGG | - | chr4.3:1959485-1959504 | MS.gene015732:intron | 45.0% | |
| TGCAACACTATACCGAACTG+AGG | + | chr4.3:1960035-1960054 | None:intergenic | 45.0% | |
| TGTAGCTGATCCCACTTAGT+GGG | - | chr4.3:1959479-1959498 | MS.gene015732:intron | 45.0% | |
| TTGTGCAGAGATAGAACTGG+TGG | - | chr4.3:1960991-1961010 | MS.gene015732:intron | 45.0% | |
| ! | AAATAGGTGCTATCCACAGG+TGG | + | chr4.3:1959273-1959292 | None:intergenic | 45.0% |
| ! | AATAGGTGCTATCCACAGGT+GGG | + | chr4.3:1959272-1959291 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | + | chr4.3:1959492-1959511 | None:intergenic | 45.0% |
| ! | CTTTGTTTGGGAGTTTGGAG+GGG | + | chr4.3:1959340-1959359 | None:intergenic | 45.0% |
| ! | GGTGCTATCCTATCTAGTGT+TGG | + | chr4.3:1959164-1959183 | None:intergenic | 45.0% |
| !! | CTAGGCTTTGTTTGGGAGTT+TGG | + | chr4.3:1959345-1959364 | None:intergenic | 45.0% |
| !! | CTCTACCTCTAGGCTTTGTT+TGG | + | chr4.3:1959353-1959372 | None:intergenic | 45.0% |
| !! | GCTTTGTTTGGGAGTTTGGA+GGG | + | chr4.3:1959341-1959360 | None:intergenic | 45.0% |
| !!! | AGGGGAGGGTTTTGGAAAAA+AGG | + | chr4.3:1959312-1959331 | None:intergenic | 45.0% |
| ACAGAGAGAAGCCGAGTTAG+CGG | + | chr4.3:1959817-1959836 | None:intergenic | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | - | chr4.3:1959490-1959509 | MS.gene015732:intron | 50.0% | |
| CTTAGTGGGATAAGGCTTGG+TGG | - | chr4.3:1959493-1959512 | MS.gene015732:intron | 50.0% | |
| GGGACGCAGCTTCAATCTAA+AGG | + | chr4.3:1959882-1959901 | None:intergenic | 50.0% | |
| GTTGGGAGCAGAATGTTGGA+CGG | - | chr4.3:1959054-1959073 | MS.gene015732:intron | 50.0% | |
| TAGAACCATGGTCTCGCAGT+TGG | - | chr4.3:1958695-1958714 | MS.gene015732:intron | 50.0% | |
| TTACGGACTCGCATTCGAGT+TGG | - | chr4.3:1961027-1961046 | MS.gene015732:CDS | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | + | chr4.3:1959493-1959512 | None:intergenic | 50.0% |
| !! | AGTTGGTGATGCTGCACCAA+TGG | - | chr4.3:1961044-1961063 | MS.gene015732:CDS | 50.0% |
| !! | GGCTTTGTTTGGGAGTTTGG+AGG | + | chr4.3:1959342-1959361 | None:intergenic | 50.0% |
| AACCTAGAAACGCCCACCTG+TGG | - | chr4.3:1959257-1959276 | MS.gene015732:intron | 55.0% | |
| AGCTCGCCTTGCAGCACATA+CGG | + | chr4.3:1960829-1960848 | None:intergenic | 55.0% | |
| AGGGATCCGTATGTGCTGCA+AGG | - | chr4.3:1960820-1960839 | MS.gene015732:intron | 55.0% | |
| ATCCACAGGTGGGCGTTTCT+AGG | + | chr4.3:1959262-1959281 | None:intergenic | 55.0% | |
| CTCACCGGATATCCATGCTC+AGG | - | chr4.3:1958581-1958600 | MS.gene015732:CDS | 55.0% | |
| GTTTGGGAGTTTGGAGGGGA+GGG | + | chr4.3:1959336-1959355 | None:intergenic | 55.0% | |
| TGTTTGGGAGTTTGGAGGGG+AGG | + | chr4.3:1959337-1959356 | None:intergenic | 55.0% | |
| CCTCACCAACTGCGAGACCA+TGG | + | chr4.3:1958703-1958722 | None:intergenic | 60.0% | |
| GAGTTTGGAGGGGAGGGAAG+GGG | + | chr4.3:1959330-1959349 | None:intergenic | 60.0% | |
| GGAGTTTGGAGGGGAGGGAA+GGG | + | chr4.3:1959331-1959350 | None:intergenic | 60.0% | |
| ! | CCATGGTCTCGCAGTTGGTG+AGG | - | chr4.3:1958700-1958719 | MS.gene015732:intron | 60.0% |
| ! | CGAGCTGCTAGTTTCGTGCG+AGG | - | chr4.3:1960843-1960862 | MS.gene015732:intron | 60.0% |
| GGGAGTTTGGAGGGGAGGGA+AGG | + | chr4.3:1959332-1959351 | None:intergenic | 65.0% | |
| TTGGAGGGGAGGGAAGGGGA+GGG | + | chr4.3:1959326-1959345 | None:intergenic | 65.0% | |
| TTTGGAGGGGAGGGAAGGGG+AGG | + | chr4.3:1959327-1959346 | None:intergenic | 65.0% | |
| ! | GGGAGGGAAGGGGAGGGTTT+TGG | + | chr4.3:1959320-1959339 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 1958547 | 1961080 | 1958547 | ID=MS.gene015732 |
| chr4.3 | mRNA | 1958547 | 1961080 | 1958547 | ID=MS.gene015732.t1;Parent=MS.gene015732 |
| chr4.3 | exon | 1961025 | 1961080 | 1961025 | ID=MS.gene015732.t1.exon1;Parent=MS.gene015732.t1 |
| chr4.3 | CDS | 1961025 | 1961080 | 1961025 | ID=cds.MS.gene015732.t1;Parent=MS.gene015732.t1 |
| chr4.3 | exon | 1960875 | 1960929 | 1960875 | ID=MS.gene015732.t1.exon2;Parent=MS.gene015732.t1 |
| chr4.3 | CDS | 1960875 | 1960929 | 1960875 | ID=cds.MS.gene015732.t1;Parent=MS.gene015732.t1 |
| chr4.3 | exon | 1960714 | 1960764 | 1960714 | ID=MS.gene015732.t1.exon3;Parent=MS.gene015732.t1 |
| chr4.3 | CDS | 1960714 | 1960764 | 1960714 | ID=cds.MS.gene015732.t1;Parent=MS.gene015732.t1 |
| chr4.3 | exon | 1958714 | 1958805 | 1958714 | ID=MS.gene015732.t1.exon4;Parent=MS.gene015732.t1 |
| chr4.3 | CDS | 1958714 | 1958805 | 1958714 | ID=cds.MS.gene015732.t1;Parent=MS.gene015732.t1 |
| chr4.3 | exon | 1958547 | 1958628 | 1958547 | ID=MS.gene015732.t1.exon5;Parent=MS.gene015732.t1 |
| chr4.3 | CDS | 1958547 | 1958628 | 1958547 | ID=cds.MS.gene015732.t1;Parent=MS.gene015732.t1 |
| Gene Sequence |
| Protein sequence |
