Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30981.t1 | XP_003602582.1 | 99.1 | 111 | 1 | 0 | 1 | 111 | 1 | 111 | 7.00E-52 | 213 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30981.t1 | A0L5Z9 | 56.5 | 108 | 46 | 1 | 5 | 111 | 8 | 115 | 4.7e-28 | 125.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30981.t1 | G7JBH3 | 99.1 | 111 | 1 | 0 | 1 | 111 | 1 | 111 | 5.1e-52 | 213.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene60589 | MS.gene30981 | PPI |
| MS.gene001444 | MS.gene30981 | PPI |
| MS.gene30981 | MS.gene043435 | PPI |
| MS.gene30981 | MS.gene60861 | PPI |
| MS.gene30981 | MS.gene001687 | PPI |
| MS.gene30981 | MS.gene005865 | PPI |
| MS.gene049140 | MS.gene30981 | PPI |
| MS.gene30981 | MS.gene001446 | PPI |
| MS.gene30981 | MS.gene026968 | PPI |
| MS.gene06427 | MS.gene30981 | PPI |
| MS.gene31468 | MS.gene30981 | PPI |
| MS.gene30981 | MS.gene028903 | PPI |
| MS.gene30981 | MS.gene04780 | PPI |
| MS.gene30981 | MS.gene055808 | PPI |
| MS.gene34167 | MS.gene30981 | PPI |
| MS.gene015732 | MS.gene30981 | PPI |
| MS.gene05937 | MS.gene30981 | PPI |
| MS.gene30981 | MS.gene82915 | PPI |
| MS.gene013330 | MS.gene30981 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30981.t1 | MTR_3g095900 | 99.099 | 111 | 1 | 0 | 1 | 111 | 1 | 111 | 1.49e-77 | 226 |
| MS.gene30981.t1 | MTR_8g103900 | 94.595 | 111 | 6 | 0 | 1 | 111 | 1 | 111 | 5.42e-75 | 219 |
| MS.gene30981.t1 | MTR_3g062930 | 44.037 | 109 | 61 | 0 | 3 | 111 | 104 | 212 | 2.03e-28 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene30981.t1 | AT5G09770 | 85.586 | 111 | 16 | 0 | 1 | 111 | 1 | 111 | 7.14e-68 | 201 |
| MS.gene30981.t1 | AT5G64650 | 85.586 | 111 | 16 | 0 | 1 | 111 | 1 | 111 | 1.46e-67 | 200 |
| MS.gene30981.t1 | AT3G54210 | 44.037 | 109 | 61 | 0 | 3 | 111 | 101 | 209 | 1.48e-28 | 103 |
Find 27 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGAAGGCTTGCGGATAATA+TGG | 0.358643 | 3.3:+79423138 | MS.gene30981:CDS |
| TTTAGGCTAAGGAGGTTAGA+AGG | 0.388038 | 3.3:+79423122 | MS.gene30981:intron |
| TCACAAGCTGTTTACAGAAC+TGG | 0.397878 | 3.3:+79425816 | MS.gene30981:CDS |
| TAGAACCATGGTCTCGCAAT+TGG | 0.405067 | 3.3:+79422973 | MS.gene30981:intron |
| AAGAGAGATTTACTCAATAT+AGG | 0.440103 | 3.3:-79426006 | None:intergenic |
| TTAACCTGAGCATGGATAAC+CGG | 0.473739 | 3.3:-79422854 | None:intergenic |
| AGCACGCCTTGCAGCACATA+CGG | 0.513486 | 3.3:-79425764 | None:intergenic |
| TATGGTACAGCTTGGTAAAG+AGG | 0.517654 | 3.3:+79423156 | MS.gene30981:CDS |
| CTGCCAAAATGACAAAGCTC+AGG | 0.541799 | 3.3:+79422808 | None:intergenic |
| ATTTACTCAATATAGGCCAT+TGG | 0.558368 | 3.3:-79425999 | None:intergenic |
| CTCACCGGTTATCCATGCTC+AGG | 0.565167 | 3.3:+79422850 | MS.gene30981:CDS |
| AGTTGGTGATGCTGCACCAA+TGG | 0.577706 | 3.3:+79425983 | MS.gene30981:CDS |
| GCGGATAATATGGTACAGCT+TGG | 0.582534 | 3.3:+79423148 | MS.gene30981:CDS |
| GTGGATACACTAGGGTGCTA+CGG | 0.583066 | 3.3:+79425949 | MS.gene30981:CDS |
| CATTGAAACTACTATTACCA+AGG | 0.585744 | 3.3:+79423009 | MS.gene30981:CDS |
| ATCGAACTGGTGGATACACT+AGG | 0.599188 | 3.3:+79425940 | MS.gene30981:CDS |
| CTACGGACTCGCATTCGAGT+TGG | 0.599565 | 3.3:+79425966 | MS.gene30981:CDS |
| GTGTTGTGCAGGGATCGAAC+TGG | 0.602705 | 3.3:+79425927 | MS.gene30981:intron |
| AGGGATCCGTATGTGCTGCA+AGG | 0.603781 | 3.3:+79425758 | MS.gene30981:intron |
| AAAGCATGTTAACCTGAGCA+TGG | 0.605726 | 3.3:-79422862 | None:intergenic |
| CCTCACCAATTGCGAGACCA+TGG | 0.612029 | 3.3:-79422978 | None:intergenic |
| CCATGGTCTCGCAATTGGTG+AGG | 0.620210 | 3.3:+79422978 | MS.gene30981:CDS |
| TTGTGCAGGGATCGAACTGG+TGG | 0.637626 | 3.3:+79425930 | MS.gene30981:intron |
| TAAGGAGGTTAGAAGGCTTG+CGG | 0.643881 | 3.3:+79423129 | MS.gene30981:CDS |
| TCAATCGAGATACGTCTCAC+CGG | 0.647896 | 3.3:+79422835 | MS.gene30981:CDS |
| TCGAACTGGTGGATACACTA+GGG | 0.666236 | 3.3:+79425941 | MS.gene30981:CDS |
| CGTGCTGCTAGTTTCGTGCG+AGG | 0.668394 | 3.3:+79425781 | MS.gene30981:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAATAAATAAAAAAA+AGG | - | chr3.3:79422906-79422925 | None:intergenic | 0.0% |
| !!! | TTATAAATTTTAATTTTTTT+GGG | - | chr3.3:79425033-79425052 | None:intergenic | 0.0% |
| !!! | TTTATAAATTTTAATTTTTT+TGG | - | chr3.3:79425034-79425053 | None:intergenic | 0.0% |
| !! | AATAAATAAAAAAAAGGAAT+TGG | - | chr3.3:79422900-79422919 | None:intergenic | 10.0% |
| !!! | AAAAAAAAAAAGTATATTTG+AGG | + | chr3.3:79424740-79424759 | MS.gene30981:intron | 10.0% |
| !!! | AAAAAAAAAAGTATATTTGA+GGG | + | chr3.3:79424741-79424760 | MS.gene30981:intron | 10.0% |
| !!! | AAATTTTATTTATATTACCT+TGG | - | chr3.3:79423029-79423048 | None:intergenic | 10.0% |
| !!! | AATATTCATTTTTTTCAATT+AGG | - | chr3.3:79424028-79424047 | None:intergenic | 10.0% |
| !!! | AATTTTTTGAAAATTTATTG+GGG | - | chr3.3:79424975-79424994 | None:intergenic | 10.0% |
| !!! | CAATTTTTTGAAAATTTATT+GGG | - | chr3.3:79424976-79424995 | None:intergenic | 10.0% |
| !!! | TATACTTTTTTTTTTTTGAA+TGG | - | chr3.3:79424736-79424755 | None:intergenic | 10.0% |
| !! | AAATAACAATTAACTTAATC+CGG | + | chr3.3:79425313-79425332 | MS.gene30981:intron | 15.0% |
| !! | AAATGAGAAAATTGAAATTA+GGG | - | chr3.3:79425008-79425027 | None:intergenic | 15.0% |
| !!! | AATTTTTCAATACTTTTGTT+TGG | - | chr3.3:79425100-79425119 | None:intergenic | 15.0% |
| !!! | ATTTTTCAAATTTTACACTT+TGG | + | chr3.3:79424919-79424938 | MS.gene30981:intron | 15.0% |
| !!! | GCAATTTTTTGAAAATTTAT+TGG | - | chr3.3:79424977-79424996 | None:intergenic | 15.0% |
| !!! | TTAAAAGAATTTAGAATTCT+AGG | - | chr3.3:79425152-79425171 | None:intergenic | 15.0% |
| !!! | TTATTTTTTATTTAGAACCA+TGG | + | chr3.3:79422961-79422980 | MS.gene30981:intron | 15.0% |
| !!! | TTTTGAAATTCTTAACTTTT+AGG | - | chr3.3:79424884-79424903 | None:intergenic | 15.0% |
| !! | AAATAAAAAAAAGGAATTGG+AGG | - | chr3.3:79422897-79422916 | None:intergenic | 20.0% |
| !! | AATAACAATTAACTTAATCC+GGG | + | chr3.3:79425314-79425333 | MS.gene30981:intron | 20.0% |
| !! | AATGAGAAAATTGAAATTAG+GGG | - | chr3.3:79425007-79425026 | None:intergenic | 20.0% |
| !! | AATGCTTGAAATATAATCAA+TGG | + | chr3.3:79425264-79425283 | MS.gene30981:intron | 20.0% |
| !! | AGTTCAAAATCTAACAAAAA+TGG | - | chr3.3:79424446-79424465 | None:intergenic | 20.0% |
| !! | ATAAGCTTGTATGATTAAAA+AGG | + | chr3.3:79423867-79423886 | MS.gene30981:intron | 20.0% |
| !! | CAAATGAGAAAATTGAAATT+AGG | - | chr3.3:79425009-79425028 | None:intergenic | 20.0% |
| !! | TGTGAATTTCAATTAAAGTT+TGG | + | chr3.3:79423083-79423102 | MS.gene30981:intron | 20.0% |
| !! | TTATCCAAATTCTGAATTAT+GGG | + | chr3.3:79422922-79422941 | MS.gene30981:intron | 20.0% |
| !! | TTGATTATATTTCAAGCATT+TGG | - | chr3.3:79425264-79425283 | None:intergenic | 20.0% |
| !! | TTTATCCAAATTCTGAATTA+TGG | + | chr3.3:79422921-79422940 | MS.gene30981:intron | 20.0% |
| !! | TTTATGAAATAGTTGTTGAT+AGG | + | chr3.3:79423677-79423696 | MS.gene30981:intron | 20.0% |
| !!! | AAACAATATTCTTTTCAAAC+TGG | + | chr3.3:79423437-79423456 | MS.gene30981:intron | 20.0% |
| !!! | AATTTCATAGTCATCATTTT+TGG | - | chr3.3:79425063-79425082 | None:intergenic | 20.0% |
| !!! | CTAATTTCAATTTTCTCATT+TGG | + | chr3.3:79425007-79425026 | MS.gene30981:intron | 20.0% |
| !!! | TGCAAATTTTGGAAAATTTA+TGG | - | chr3.3:79424946-79424965 | None:intergenic | 20.0% |
| !!! | TTGATGAATTTTCAAAATGA+TGG | + | chr3.3:79424807-79424826 | MS.gene30981:intron | 20.0% |
| !!! | TTTTGATTAGATAATTCAAG+TGG | + | chr3.3:79423953-79423972 | MS.gene30981:intron | 20.0% |
| ! | AATATATTCCTTCAGGAAAA+CGG | - | chr3.3:79423810-79423829 | None:intergenic | 25.0% |
| ! | AGATTATATCCTTTCTCTTT+GGG | + | chr3.3:79424381-79424400 | MS.gene30981:intron | 25.0% |
| ! | AGGTAATTCAGTTTACTAAA+TGG | - | chr3.3:79425367-79425386 | None:intergenic | 25.0% |
| ! | ATAAAAATTATCCATAGCCA+TGG | - | chr3.3:79425635-79425654 | None:intergenic | 25.0% |
| ! | ATAAAATATCCCAAAGAGAA+AGG | - | chr3.3:79424393-79424412 | None:intergenic | 25.0% |
| ! | ATAAATGTTGAGTAAATCAG+TGG | + | chr3.3:79423501-79423520 | MS.gene30981:intron | 25.0% |
| ! | ATAACAATTAACTTAATCCG+GGG | + | chr3.3:79425315-79425334 | MS.gene30981:intron | 25.0% |
| ! | ATCTTGAGCATATATTTGAT+AGG | + | chr3.3:79425664-79425683 | MS.gene30981:intron | 25.0% |
| ! | ATTTAACTATTAGAATTCCC+CGG | - | chr3.3:79425335-79425354 | None:intergenic | 25.0% |
| ! | ATTTAGTAAACTGAATTACC+TGG | + | chr3.3:79425366-79425385 | MS.gene30981:intron | 25.0% |
| ! | CTAAACTATCTGTTGAAAAT+CGG | + | chr3.3:79423597-79423616 | MS.gene30981:intron | 25.0% |
| ! | GAATTTCAATTAAAGTTTGG+TGG | + | chr3.3:79423086-79423105 | MS.gene30981:intron | 25.0% |
| ! | TAGATTATATCCTTTCTCTT+TGG | + | chr3.3:79424380-79424399 | MS.gene30981:intron | 25.0% |
| ! | TCAAAATGACAATTACCAAA+CGG | - | chr3.3:79423895-79423914 | None:intergenic | 25.0% |
| ! | TTACTCAACATTTATCTTCA+GGG | - | chr3.3:79423496-79423515 | None:intergenic | 25.0% |
| ! | TTGGTTATTTGATTACTTTC+AGG | + | chr3.3:79424523-79424542 | MS.gene30981:intron | 25.0% |
| ! | TTTACTCAACATTTATCTTC+AGG | - | chr3.3:79423497-79423516 | None:intergenic | 25.0% |
| ! | TTTAGTAAACTGAATTACCT+GGG | + | chr3.3:79425367-79425386 | MS.gene30981:intron | 25.0% |
| !! | AAGGAATATATTTTGTCTGT+TGG | + | chr3.3:79423818-79423837 | MS.gene30981:intron | 25.0% |
| !! | AGTTTAACTATTTTGCATCT+GGG | + | chr3.3:79423222-79423241 | MS.gene30981:intron | 25.0% |
| !! | TAGTTTAACTATTTTGCATC+TGG | + | chr3.3:79423221-79423240 | MS.gene30981:intron | 25.0% |
| !!! | AGTGCATTTTTAGTTTCAAA+AGG | + | chr3.3:79423289-79423308 | MS.gene30981:intron | 25.0% |
| !!! | GACATTTTTTAAACCTCTTT+CGG | - | chr3.3:79423471-79423490 | None:intergenic | 25.0% |
| !!! | GTAATTTTGATTTTAGGCTA+AGG | + | chr3.3:79423111-79423130 | MS.gene30981:intron | 25.0% |
| !!! | GTGGTTGTAATTTTGATTTT+AGG | + | chr3.3:79423105-79423124 | MS.gene30981:intron | 25.0% |
| !!! | TTTCAATACTTTTGTTTGGA+TGG | - | chr3.3:79425096-79425115 | None:intergenic | 25.0% |
| !!! | TTTTTTCAATTAGGATTGCA+GGG | - | chr3.3:79424019-79424038 | None:intergenic | 25.0% |
| !!! | TTTTTTTCAATTAGGATTGC+AGG | - | chr3.3:79424020-79424039 | None:intergenic | 25.0% |
| AAAAAAAGGAATTGGAGGAT+TGG | - | chr3.3:79422892-79422911 | None:intergenic | 30.0% | |
| AGGACTCAATTAAATAACCT+GGG | - | chr3.3:79423579-79423598 | None:intergenic | 30.0% | |
| AGTACCCATAATTCAGAATT+TGG | - | chr3.3:79422929-79422948 | None:intergenic | 30.0% | |
| AGTTTACACGATAAACTGTT+AGG | + | chr3.3:79425738-79425757 | MS.gene30981:intron | 30.0% | |
| ATAACAGAAATAGAGTGCAA+AGG | - | chr3.3:79424503-79424522 | None:intergenic | 30.0% | |
| CAAAATGACAATTACCAAAC+GGG | - | chr3.3:79423894-79423913 | None:intergenic | 30.0% | |
| CAAATATATGCTCAAGATCA+AGG | - | chr3.3:79425662-79425681 | None:intergenic | 30.0% | |
| CAAATGCTGATAAAAACTTG+TGG | + | chr3.3:79423741-79423760 | MS.gene30981:intron | 30.0% | |
| CAATTAAATAACCTGGGTTA+GGG | - | chr3.3:79423573-79423592 | None:intergenic | 30.0% | |
| CAGACAAAATATATTCCTTC+AGG | - | chr3.3:79423817-79423836 | None:intergenic | 30.0% | |
| CATGCTTATAAGAAAGAAGA+TGG | + | chr3.3:79424338-79424357 | MS.gene30981:intron | 30.0% | |
| CATTGAAACTACTATTACCA+AGG | + | chr3.3:79423009-79423028 | MS.gene30981:CDS | 30.0% | |
| GGTAAAAAAGGAAACATACA+AGG | - | chr3.3:79424668-79424687 | None:intergenic | 30.0% | |
| GTTTACACGATAAACTGTTA+GGG | + | chr3.3:79425739-79425758 | MS.gene30981:intron | 30.0% | |
| TAGGACTCAATTAAATAACC+TGG | - | chr3.3:79423580-79423599 | None:intergenic | 30.0% | |
| TCAATTAAATAACCTGGGTT+AGG | - | chr3.3:79423574-79423593 | None:intergenic | 30.0% | |
| TCTCATTGATAGAACTCAAA+TGG | + | chr3.3:79423650-79423669 | MS.gene30981:intron | 30.0% | |
| TTGAGGTGAAATTCATTGTT+TGG | + | chr3.3:79424776-79424795 | MS.gene30981:intron | 30.0% | |
| ! | ATCGTAATCGTATGCATTTT+CGG | + | chr3.3:79423050-79423069 | MS.gene30981:intron | 30.0% |
| ! | ATTTATCTAGCTTGACTACT+TGG | + | chr3.3:79425705-79425724 | MS.gene30981:intron | 30.0% |
| ! | CGATTTTCAACAGATAGTTT+AGG | - | chr3.3:79423599-79423618 | None:intergenic | 30.0% |
| ! | CTGATTGAATTTGAAGTGTT+TGG | - | chr3.3:79424113-79424132 | None:intergenic | 30.0% |
| ! | CTGGGTATGCAAATTTTAAA+TGG | + | chr3.3:79423240-79423259 | MS.gene30981:intron | 30.0% |
| ! | CTTCTATTGTTTCTTGTTCT+TGG | + | chr3.3:79423318-79423337 | MS.gene30981:intron | 30.0% |
| ! | TTATTTTCACGAGCTTATAG+TGG | + | chr3.3:79423929-79423948 | MS.gene30981:intron | 30.0% |
| !! | AGTCATTGTTATTTGTTTGC+TGG | + | chr3.3:79425207-79425226 | MS.gene30981:intron | 30.0% |
| !! | TGCACTCTATTTCTGTTATT+TGG | + | chr3.3:79424504-79424523 | MS.gene30981:intron | 30.0% |
| !! | TTTAAATGGACTGTGAAATG+TGG | + | chr3.3:79423254-79423273 | MS.gene30981:intron | 30.0% |
| !! | TTTTTCAATTAGGATTGCAG+GGG | - | chr3.3:79424018-79424037 | None:intergenic | 30.0% |
| !!! | ATTTTGATTTTAGGCTAAGG+AGG | + | chr3.3:79423114-79423133 | MS.gene30981:intron | 30.0% |
| AAACTGCATTAAATAACCCC+TGG | - | chr3.3:79423548-79423567 | None:intergenic | 35.0% | |
| AACTGTAACAAACATGCATG+TGG | - | chr3.3:79425551-79425570 | None:intergenic | 35.0% | |
| ACAAAGCCAAAGAACATCTA+CGG | - | chr3.3:79424231-79424250 | None:intergenic | 35.0% | |
| ATACTGATGAAAAACCACCA+GGG | + | chr3.3:79423528-79423547 | MS.gene30981:intron | 35.0% | |
| ATGATTAAAAAGGACCCGTT+TGG | + | chr3.3:79423877-79423896 | MS.gene30981:intron | 35.0% | |
| ATTAGAACTCGCGGTAAAAA+AGG | - | chr3.3:79424680-79424699 | None:intergenic | 35.0% | |
| CTTAAGTTAACGTTCTAACC+TGG | + | chr3.3:79425230-79425249 | MS.gene30981:intron | 35.0% | |
| GAGGGAATTCAAATACTTTG+AGG | + | chr3.3:79424759-79424778 | MS.gene30981:intron | 35.0% | |
| GTGTTTCAAAAGCAGATGAA+AGG | - | chr3.3:79424268-79424287 | None:intergenic | 35.0% | |
| TTAGGTGTTCCGTATATTTG+CGG | + | chr3.3:79424640-79424659 | MS.gene30981:intron | 35.0% | |
| TTCTCCTCGTTAGTATATCT+CGG | + | chr3.3:79424579-79424598 | MS.gene30981:intron | 35.0% | |
| ! | AAGCATTTGGATTTTCATCC+AGG | - | chr3.3:79425251-79425270 | None:intergenic | 35.0% |
| ! | ATTACTTTCAGGTGCTATGA+TGG | + | chr3.3:79424534-79424553 | MS.gene30981:intron | 35.0% |
| ! | GCTGATAAGCTAGCTTATAT+CGG | - | chr3.3:79424193-79424212 | None:intergenic | 35.0% |
| ! | TGGGGTCAAATTGCAAATTT+TGG | - | chr3.3:79424957-79424976 | None:intergenic | 35.0% |
| !! | AGCTAGCTTATAGTTGATAG+CGG | - | chr3.3:79424145-79424164 | None:intergenic | 35.0% |
| !! | TATCCATAGCCATGGTTTTA+TGG | - | chr3.3:79425627-79425646 | None:intergenic | 35.0% |
| !!! | ATCCATAGCCATGGTTTTAT+GGG | - | chr3.3:79425626-79425645 | None:intergenic | 35.0% |
| !!! | TCATTTTGATTGCCTTGGTT+CGG | + | chr3.3:79423702-79423721 | MS.gene30981:intron | 35.0% |
| AAAGCATGTTAACCTGAGCA+TGG | - | chr3.3:79422865-79422884 | None:intergenic | 40.0% | |
| AACAGACATTGTGTTGTGCA+GGG | + | chr3.3:79425917-79425936 | MS.gene30981:intron | 40.0% | |
| AAGCAGATGAAAGGTGATGA+AGG | - | chr3.3:79424259-79424278 | None:intergenic | 40.0% | |
| ACTTCATCCAAACACACTCT+TGG | + | chr3.3:79425183-79425202 | MS.gene30981:intron | 40.0% | |
| ATTACCTGGGCTTCATAGTT+TGG | + | chr3.3:79425380-79425399 | MS.gene30981:intron | 40.0% | |
| CTTCATCCAAACACACTCTT+GGG | + | chr3.3:79425184-79425203 | MS.gene30981:intron | 40.0% | |
| GATACTGATGAAAAACCACC+AGG | + | chr3.3:79423527-79423546 | MS.gene30981:intron | 40.0% | |
| GTAACAAACATGCATGTGGA+AGG | - | chr3.3:79425547-79425566 | None:intergenic | 40.0% | |
| TAACCCCTTAAAACCTCCTA+TGG | - | chr3.3:79424623-79424642 | None:intergenic | 40.0% | |
| TACTGATGAAAAACCACCAG+GGG | + | chr3.3:79423529-79423548 | MS.gene30981:intron | 40.0% | |
| TAGAAGGCTTGCGGATAATA+TGG | + | chr3.3:79423138-79423157 | MS.gene30981:CDS | 40.0% | |
| TATGGTACAGCTTGGTAAAG+AGG | + | chr3.3:79423156-79423175 | MS.gene30981:CDS | 40.0% | |
| TCACAAGCTGTTTACAGAAC+TGG | + | chr3.3:79425816-79425835 | MS.gene30981:CDS | 40.0% | |
| TGATGAGTCCCATAAAACCA+TGG | + | chr3.3:79425615-79425634 | MS.gene30981:intron | 40.0% | |
| TGCAGAAAAGGTTGAGAAAC+TGG | - | chr3.3:79425408-79425427 | None:intergenic | 40.0% | |
| TGGCAAATTTATTCTCGACG+AGG | - | chr3.3:79424716-79424735 | None:intergenic | 40.0% | |
| TTAACCTGAGCATGGATAAC+CGG | - | chr3.3:79422857-79422876 | None:intergenic | 40.0% | |
| TTACCTGGGCTTCATAGTTT+GGG | + | chr3.3:79425381-79425400 | MS.gene30981:intron | 40.0% | |
| TTAGGATTGCAGGGGTAAAA+TGG | - | chr3.3:79424010-79424029 | None:intergenic | 40.0% | |
| TTCATAGTGCTTGTGCGTTT+GGG | + | chr3.3:79425498-79425517 | MS.gene30981:intron | 40.0% | |
| TTTAGGCTAAGGAGGTTAGA+AGG | + | chr3.3:79423122-79423141 | MS.gene30981:intron | 40.0% | |
| ! | ACTGGTTTAAGTTCCGAAAG+AGG | + | chr3.3:79423455-79423474 | MS.gene30981:intron | 40.0% |
| ! | ATGGGAACTAATGGTGGAAA+AGG | - | chr3.3:79425596-79425615 | None:intergenic | 40.0% |
| ! | GACTACATGTTTTGTGAGAG+TGG | - | chr3.3:79424306-79424325 | None:intergenic | 40.0% |
| ! | TGGGAACTAATGGTGGAAAA+GGG | - | chr3.3:79425595-79425614 | None:intergenic | 40.0% |
| !! | AGTTTGTTTTCACCTCAGTC+AGG | + | chr3.3:79425458-79425477 | MS.gene30981:intron | 40.0% |
| !! | GGTTTTATGGGACTCATCAT+GGG | - | chr3.3:79425614-79425633 | None:intergenic | 40.0% |
| !! | GTTTGTTTTCACCTCAGTCA+GGG | + | chr3.3:79425459-79425478 | MS.gene30981:intron | 40.0% |
| !! | TACAAGGTGCCGCAAATATA+CGG | - | chr3.3:79424652-79424671 | None:intergenic | 40.0% |
| !! | TTTGTTTTCACCTCAGTCAG+GGG | + | chr3.3:79425460-79425479 | MS.gene30981:intron | 40.0% |
| !!! | AGGCATCATTTTGATTGCCT+TGG | + | chr3.3:79423697-79423716 | MS.gene30981:intron | 40.0% |
| !!! | ATAGGAGGTTTTAAGGGGTT+AGG | + | chr3.3:79424622-79424641 | MS.gene30981:intron | 40.0% |
| !!! | TGGTTTTATGGGACTCATCA+TGG | - | chr3.3:79425615-79425634 | None:intergenic | 40.0% |
| ACAGAGCCGTAGATGTTCTT+TGG | + | chr3.3:79424222-79424241 | MS.gene30981:intron | 45.0% | |
| AGAACATCTACGGCTCTGTT+TGG | - | chr3.3:79424221-79424240 | None:intergenic | 45.0% | |
| ATTCCTTCAGGAAAACGGAC+AGG | - | chr3.3:79423805-79423824 | None:intergenic | 45.0% | |
| CTCATCATGGGAACTAATGG+TGG | - | chr3.3:79425602-79425621 | None:intergenic | 45.0% | |
| CTGCATTAAATAACCCCTGG+TGG | - | chr3.3:79423545-79423564 | None:intergenic | 45.0% | |
| CTTCATAGTGCTTGTGCGTT+TGG | + | chr3.3:79425497-79425516 | MS.gene30981:intron | 45.0% | |
| GAACAGACATTGTGTTGTGC+AGG | + | chr3.3:79425916-79425935 | MS.gene30981:intron | 45.0% | |
| GAGACCGAGATATACTAACG+AGG | - | chr3.3:79424586-79424605 | None:intergenic | 45.0% | |
| GCGGATAATATGGTACAGCT+TGG | + | chr3.3:79423148-79423167 | MS.gene30981:CDS | 45.0% | |
| GGACTCATCATGGGAACTAA+TGG | - | chr3.3:79425605-79425624 | None:intergenic | 45.0% | |
| GTATATCTCGGTCTCAACAC+CGG | + | chr3.3:79424591-79424610 | MS.gene30981:intron | 45.0% | |
| GTCCCATAAAACCATGGCTA+TGG | + | chr3.3:79425621-79425640 | MS.gene30981:intron | 45.0% | |
| TAAGGAGGTTAGAAGGCTTG+CGG | + | chr3.3:79423129-79423148 | MS.gene30981:CDS | 45.0% | |
| TACCTGGGCTTCATAGTTTG+GGG | + | chr3.3:79425382-79425401 | MS.gene30981:intron | 45.0% | |
| TAGAACCATGGTCTCGCAAT+TGG | + | chr3.3:79422973-79422992 | MS.gene30981:intron | 45.0% | |
| TCAATCGAGATACGTCTCAC+CGG | + | chr3.3:79422835-79422854 | MS.gene30981:CDS | 45.0% | |
| TGCAACACTATACCGAACCA+AGG | - | chr3.3:79423717-79423736 | None:intergenic | 45.0% | |
| ! | ATCGAACTGGTGGATACACT+AGG | + | chr3.3:79425940-79425959 | MS.gene30981:CDS | 45.0% |
| ! | ATGACTCCCAAGAGTGTGTT+TGG | - | chr3.3:79425193-79425212 | None:intergenic | 45.0% |
| ! | ATGCAGTTTTTCCCTAACCC+AGG | + | chr3.3:79423559-79423578 | MS.gene30981:intron | 45.0% |
| ! | GTTTTGTGAGAGTGGATGCA+TGG | - | chr3.3:79424298-79424317 | None:intergenic | 45.0% |
| ! | TCGAACTGGTGGATACACTA+GGG | + | chr3.3:79425941-79425960 | MS.gene30981:CDS | 45.0% |
| ! | TCTCGCCATAGGAGGTTTTA+AGG | + | chr3.3:79424615-79424634 | MS.gene30981:intron | 45.0% |
| ! | TTTCAGGTGCTATGATGGTG+AGG | + | chr3.3:79424539-79424558 | MS.gene30981:intron | 45.0% |
| !! | CTCGCCATAGGAGGTTTTAA+GGG | + | chr3.3:79424616-79424635 | MS.gene30981:intron | 45.0% |
| !! | GCAAGAAGCATTAGAACTCG+CGG | - | chr3.3:79424689-79424708 | None:intergenic | 45.0% |
| !!! | TCGCCATAGGAGGTTTTAAG+GGG | + | chr3.3:79424617-79424636 | MS.gene30981:intron | 45.0% |
| AAACCTCCTATGGCGAGATC+CGG | - | chr3.3:79424613-79424632 | None:intergenic | 50.0% | |
| CAGCGAAGTGAGTGCAGAAA+AGG | - | chr3.3:79425420-79425439 | None:intergenic | 50.0% | |
| TTCACCTCAGTCAGGGGATA+TGG | + | chr3.3:79425466-79425485 | MS.gene30981:intron | 50.0% | |
| ! | AGTCAGGGGATATGGCTTGT+GGG | + | chr3.3:79425474-79425493 | MS.gene30981:intron | 50.0% |
| ! | GTGGATACACTAGGGTGCTA+CGG | + | chr3.3:79425949-79425968 | MS.gene30981:CDS | 50.0% |
| !! | AGTTGGTGATGCTGCACCAA+TGG | + | chr3.3:79425983-79426002 | MS.gene30981:CDS | 50.0% |
| AGCACGCCTTGCAGCACATA+CGG | - | chr3.3:79425767-79425786 | None:intergenic | 55.0% | |
| AGGGATCCGTATGTGCTGCA+AGG | + | chr3.3:79425758-79425777 | MS.gene30981:intron | 55.0% | |
| CAAGCCATATCCCCTGACTG+AGG | - | chr3.3:79425473-79425492 | None:intergenic | 55.0% | |
| CAATGGTGACAGTGCGACAC+TGG | + | chr3.3:79425281-79425300 | MS.gene30981:intron | 55.0% | |
| CAGTCAGGGGATATGGCTTG+TGG | + | chr3.3:79425473-79425492 | MS.gene30981:intron | 55.0% | |
| CCATGGTCTCGCAATTGGTG+AGG | + | chr3.3:79422978-79422997 | MS.gene30981:CDS | 55.0% | |
| CCTCACCAATTGCGAGACCA+TGG | - | chr3.3:79422981-79423000 | None:intergenic | 55.0% | |
| CCTTCAGGAAAACGGACAGG+AGG | - | chr3.3:79423802-79423821 | None:intergenic | 55.0% | |
| CTACGGACTCGCATTCGAGT+TGG | + | chr3.3:79425966-79425985 | MS.gene30981:CDS | 55.0% | |
| GTGAGGCAGGGATATGCTTG+CGG | + | chr3.3:79424556-79424575 | MS.gene30981:intron | 55.0% | |
| GTGTTGTGCAGGGATCGAAC+TGG | + | chr3.3:79425927-79425946 | MS.gene30981:intron | 55.0% | |
| TCAACACCGGATCTCGCCAT+AGG | + | chr3.3:79424604-79424623 | MS.gene30981:intron | 55.0% | |
| TTGTGCAGGGATCGAACTGG+TGG | + | chr3.3:79425930-79425949 | MS.gene30981:intron | 55.0% | |
| ! | AGGTGCTATGATGGTGAGGC+AGG | + | chr3.3:79424543-79424562 | MS.gene30981:intron | 55.0% |
| ! | CCTCCTGTCCGTTTTCCTGA+AGG | + | chr3.3:79423799-79423818 | MS.gene30981:intron | 55.0% |
| ! | CTCACCGGTTATCCATGCTC+AGG | + | chr3.3:79422850-79422869 | MS.gene30981:CDS | 55.0% |
| ! | GGTGCTATGATGGTGAGGCA+GGG | + | chr3.3:79424544-79424563 | MS.gene30981:intron | 55.0% |
| ACACCGGATCTCGCCATAGG+AGG | + | chr3.3:79424607-79424626 | MS.gene30981:intron | 60.0% | |
| GGCCCCAAACTATGAAGCCC+AGG | - | chr3.3:79425387-79425406 | None:intergenic | 60.0% | |
| ! | CGTGCTGCTAGTTTCGTGCG+AGG | + | chr3.3:79425781-79425800 | MS.gene30981:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.3 | gene | 79422816 | 79426019 | 79422816 | ID=MS.gene30981 |
| chr3.3 | mRNA | 79422816 | 79426019 | 79422816 | ID=MS.gene30981.t1;Parent=MS.gene30981 |
| chr3.3 | exon | 79422816 | 79422871 | 79422816 | ID=MS.gene30981.t1.exon1;Parent=MS.gene30981.t1 |
| chr3.3 | CDS | 79422816 | 79422871 | 79422816 | ID=cds.MS.gene30981.t1;Parent=MS.gene30981.t1 |
| chr3.3 | exon | 79422976 | 79423030 | 79422976 | ID=MS.gene30981.t1.exon2;Parent=MS.gene30981.t1 |
| chr3.3 | CDS | 79422976 | 79423030 | 79422976 | ID=cds.MS.gene30981.t1;Parent=MS.gene30981.t1 |
| chr3.3 | exon | 79423127 | 79423177 | 79423127 | ID=MS.gene30981.t1.exon3;Parent=MS.gene30981.t1 |
| chr3.3 | CDS | 79423127 | 79423177 | 79423127 | ID=cds.MS.gene30981.t1;Parent=MS.gene30981.t1 |
| chr3.3 | exon | 79425760 | 79425851 | 79425760 | ID=MS.gene30981.t1.exon4;Parent=MS.gene30981.t1 |
| chr3.3 | CDS | 79425760 | 79425851 | 79425760 | ID=cds.MS.gene30981.t1;Parent=MS.gene30981.t1 |
| chr3.3 | exon | 79425938 | 79426019 | 79425938 | ID=MS.gene30981.t1.exon5;Parent=MS.gene30981.t1 |
| chr3.3 | CDS | 79425938 | 79426019 | 79425938 | ID=cds.MS.gene30981.t1;Parent=MS.gene30981.t1 |
| Gene Sequence |
| Protein sequence |
