AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene003048

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003048.t1 MTR_4g032390 92.281 285 21 1 1 285 1 284 0.0 528
MS.gene003048.t1 MTR_3g096190 93.380 287 12 2 1 285 1 282 0.0 525
MS.gene003048.t1 MTR_3g096190 92.488 213 9 2 1 211 1 208 9.25e-132 372
MS.gene003048.t1 MTR_5g464770 52.036 221 96 3 75 285 19 239 3.18e-74 227
MS.gene003048.t1 MTR_1g112880 54.118 170 77 1 116 285 2 170 1.04e-61 193
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene003048.t1 AT3G57000 57.807 301 108 6 1 285 1 298 1.19e-120 347

Find 57 sgRNAs with CRISPR-Local

Find 341 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGAACCGTTTGAATGTTCT+TGG 0.244591 2.2:-61240186 None:intergenic
ATACAGTAAGCAGCACTTAA+AGG 0.273684 2.2:-61241454 None:intergenic
GAGAGTTGACGGGCAAATAC+TGG 0.282558 2.2:-61240427 None:intergenic
TCTGTTGTTGCTGTTGCTAT+TGG 0.283282 2.2:-61236140 None:intergenic
TGTTCCTCGTTCTGACGATT+TGG 0.348504 2.2:-61236110 None:intergenic
ACGGGCAAATACTGGGTTAC+GGG 0.353988 2.2:-61240419 None:intergenic
TAAAGCTGGGAGGTTGAAAA+TGG 0.355073 2.2:+61240107 MS.gene003048:CDS
CAATCAGGACCTTGTCTTTG+TGG 0.379821 2.2:+61240906 MS.gene003048:CDS
TTCTGACGATTTGGTTTCTT+CGG 0.384913 2.2:-61236101 None:intergenic
ACGAGAGCTTACACTGTAAA+GGG 0.387527 2.2:+61235993 MS.gene003048:CDS
CAGGATTCTTGCTATGTTTG+CGG 0.403073 2.2:-61237518 None:intergenic
GTCAACAATTCCAAGCAATC+AGG 0.407962 2.2:+61240891 MS.gene003048:CDS
ACAGAGGAATCTGAACTTCC+TGG 0.411787 2.2:+61236158 MS.gene003048:CDS
GTATACATAAGGACTGAAAA+AGG 0.415050 2.2:+61240129 MS.gene003048:CDS
TACAGTAAGCAGCACTTAAA+GGG 0.420498 2.2:-61241453 None:intergenic
TTGTTCATGGTCGTGCTTTG+TGG 0.426208 2.2:-61236042 None:intergenic
CAGACCTGACATTTGTCATC+AGG 0.431148 2.2:+61237548 MS.gene003048:CDS
ACCTCCCAGCTTTATTTAGC+GGG 0.432591 2.2:-61240098 None:intergenic
CGATTTGGTTTCTTCGGTGT+TGG 0.437568 2.2:-61236095 None:intergenic
AAGGATTACCAATGCTATTG+AGG 0.448693 2.2:+61241480 MS.gene003048:CDS
TCTTTAGAAGTCGCTAAAGT+TGG 0.449255 2.2:+61236251 MS.gene003048:CDS
CCCGTCAACTCTCGAAAAGC+AGG 0.471030 2.2:+61240437 MS.gene003048:CDS
AGGATTACCAATGCTATTGA+GGG 0.471656 2.2:+61241481 MS.gene003048:CDS
GATAGCCCGCTAAATAAAGC+TGG 0.474848 2.2:+61240093 MS.gene003048:CDS
CCACTTTCCCTCAATAGCAT+TGG 0.478446 2.2:-61241488 None:intergenic
TACACAGATGATTATATAGC+TGG 0.482001 2.2:+61241043 MS.gene003048:CDS
AAGACAAGGTCCTGATTGCT+TGG 0.489499 2.2:-61240901 None:intergenic
AAATTGAGTATAACTGCTGC+TGG 0.491203 2.2:+61240362 MS.gene003048:CDS
AACCTCCCAGCTTTATTTAG+CGG 0.492235 2.2:-61240099 None:intergenic
GACGAGAGCTTACACTGTAA+AGG 0.508341 2.2:+61235992 MS.gene003048:CDS
GGTTGAAAATGGTATACATA+AGG 0.511316 2.2:+61240118 MS.gene003048:CDS
CCAATGCTATTGAGGGAAAG+TGG 0.511925 2.2:+61241488 MS.gene003048:CDS
TGTTCTTGGAATACGAACAT+AGG 0.519455 2.2:-61240172 None:intergenic
CGGGCAAATACTGGGTTACG+GGG 0.520947 2.2:-61240418 None:intergenic
GACGGGCAAATACTGGGTTA+CGG 0.523874 2.2:-61240420 None:intergenic
CGCAAACATAGCAAGAATCC+TGG 0.525671 2.2:+61237519 MS.gene003048:CDS
GTGCTGCTTACTGTATTACA+AGG 0.530206 2.2:+61241461 MS.gene003048:CDS
AGAGTTGACGGGCAAATACT+GGG 0.541627 2.2:-61240426 None:intergenic
GTTCTTGGAATACGAACATA+GGG 0.541815 2.2:-61240171 None:intergenic
AAAGGAGCAATTGGAATACC+AGG 0.551218 2.2:-61236176 None:intergenic
AGAACATTCAAACGGTTCGC+TGG 0.554467 2.2:+61240189 MS.gene003048:CDS
GTATTCCAAGAACATTCAAA+CGG 0.559538 2.2:+61240181 MS.gene003048:CDS
AGGAGCAATGGCACATGGGA+AGG 0.566159 2.2:+61241009 MS.gene003048:CDS
AAGGTAGGAGCAATGGCACA+TGG 0.567635 2.2:+61241004 MS.gene003048:intron
CTAATTTAAGGTAGGAGCAA+TGG 0.567697 2.2:+61240997 MS.gene003048:intron
CCAACCTGATGACAAATGTC+AGG 0.576918 2.2:-61237552 None:intergenic
AGAAGTCGCTAAAGTTGGCA+AGG 0.591319 2.2:+61236256 MS.gene003048:CDS
ATGTCAGGTCTGTAATCACC+AGG 0.611984 2.2:-61237537 None:intergenic
ATAGCCCGCTAAATAAAGCT+GGG 0.615108 2.2:+61240094 MS.gene003048:CDS
GATTCTTGCTATGTTTGCGG+AGG 0.637726 2.2:-61237515 None:intergenic
AGGTAGGAGCAATGGCACAT+GGG 0.662380 2.2:+61241005 MS.gene003048:intron
CGAGAGCTTACACTGTAAAG+GGG 0.662954 2.2:+61235994 MS.gene003048:CDS
GAAAAGAATAGCGAGAAACA+AGG 0.669520 2.2:+61236203 MS.gene003048:CDS
GAAACCAAATCGTCAGAACG+AGG 0.669855 2.2:+61236106 MS.gene003048:CDS
AATAGCAACAGCAACAACAG+AGG 0.697637 2.2:+61236142 MS.gene003048:CDS
TAGGGAGTACCACAAAGACA+AGG 0.712278 2.2:-61240915 None:intergenic
GCCCGCTAAATAAAGCTGGG+AGG 0.725844 2.2:+61240097 MS.gene003048:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTTTTACATATGAA+TGG + chr2.2:61238657-61238676 MS.gene003048:intron 10.0%
!!! TACATATATGATTTTTTAAT+GGG + chr2.2:61237332-61237351 MS.gene003048:intron 10.0%
!!! TTACATATATGATTTTTTAA+TGG + chr2.2:61237331-61237350 MS.gene003048:intron 10.0%
!! AAATACATTAAGATCATATT+TGG - chr2.2:61241364-61241383 None:intergenic 15.0%
!! AACAAAAGAAAGATAAAATA+AGG + chr2.2:61239452-61239471 MS.gene003048:intron 15.0%
!! ACAAAAGAAAGATAAAATAA+GGG + chr2.2:61239453-61239472 MS.gene003048:intron 15.0%
!! GAATATTTGTAGTAATTATT+GGG + chr2.2:61238023-61238042 MS.gene003048:intron 15.0%
!! TATGATACTATCTTAAAATT+TGG - chr2.2:61238268-61238287 None:intergenic 15.0%
!! TGAATATTTGTAGTAATTAT+TGG + chr2.2:61238022-61238041 MS.gene003048:intron 15.0%
!!! AAATTTTAAGATAGTATCAT+AGG + chr2.2:61238267-61238286 MS.gene003048:intron 15.0%
!!! TGATACATTTCTAAAAATTA+AGG + chr2.2:61239935-61239954 MS.gene003048:intron 15.0%
!! AACATTATATATGCTCTTAA+CGG - chr2.2:61238988-61239007 None:intergenic 20.0%
!! AAGATAAACCTAATATTCAA+AGG - chr2.2:61240834-61240853 None:intergenic 20.0%
!! AATCAAATGAAATAAACATG+CGG - chr2.2:61240710-61240729 None:intergenic 20.0%
!! AATTGTTTCCTTTGAATATT+AGG + chr2.2:61240823-61240842 MS.gene003048:intron 20.0%
!! ACTATCTTAAAATTTGGATT+AGG - chr2.2:61238262-61238281 None:intergenic 20.0%
!! AGACGATTATCATATAATAA+GGG - chr2.2:61237181-61237200 None:intergenic 20.0%
!! GTAATTTGATTAAAATCCAA+TGG - chr2.2:61236904-61236923 None:intergenic 20.0%
!! GTTCTTAATTTATTCTAAGT+GGG + chr2.2:61239113-61239132 MS.gene003048:intron 20.0%
!! TACAATTGATAAAAACAGTT+TGG - chr2.2:61237580-61237599 None:intergenic 20.0%
!! TAGACGATTATCATATAATA+AGG - chr2.2:61237182-61237201 None:intergenic 20.0%
!! TGCGAATAAAATTATAGTTT+AGG + chr2.2:61237787-61237806 MS.gene003048:intron 20.0%
!! TGTTCTTAATTTATTCTAAG+TGG + chr2.2:61239112-61239131 MS.gene003048:intron 20.0%
!! TTTAAAAATTCTCTCAAACA+AGG - chr2.2:61236484-61236503 None:intergenic 20.0%
!!! CTTTTGAATGATCTAATTTA+AGG + chr2.2:61240985-61241004 MS.gene003048:intron 20.0%
!!! GCAAATATTATCATATTTTG+AGG + chr2.2:61239991-61240010 MS.gene003048:intron 20.0%
!!! TATTCACTTTTCCTTAAATT+TGG + chr2.2:61241079-61241098 MS.gene003048:intron 20.0%
!!! TTTTAGAAATGTATCAGTTT+TGG - chr2.2:61239931-61239950 None:intergenic 20.0%
! AAACAATATTCACATATCCA+TGG - chr2.2:61239821-61239840 None:intergenic 25.0%
! AACATAAAAACAAGTTCTCA+TGG + chr2.2:61239298-61239317 MS.gene003048:intron 25.0%
! AATCATCAACTGAGATAAAT+AGG - chr2.2:61240963-61240982 None:intergenic 25.0%
! AATCATTATTACTCGCAATA+CGG - chr2.2:61237440-61237459 None:intergenic 25.0%
! ACATCTTACTTCATTATTCA+TGG - chr2.2:61238724-61238743 None:intergenic 25.0%
! ATATGATAATCGTTTATGAG+AGG + chr2.2:61237134-61237153 MS.gene003048:intron 25.0%
! ATTGTCTTCATACAAGTTAT+AGG - chr2.2:61241261-61241280 None:intergenic 25.0%
! GAACAATAGATCAGAAAAAT+AGG - chr2.2:61238516-61238535 None:intergenic 25.0%
! GATGATTTAACGATAACAAT+CGG - chr2.2:61236877-61236896 None:intergenic 25.0%
! TGAAAGTTGAATACAAATCA+AGG - chr2.2:61239707-61239726 None:intergenic 25.0%
! TTTAAACTATCAAAGATCTC+AGG + chr2.2:61237018-61237037 MS.gene003048:intron 25.0%
! TTTAAGGAAAAGTGAATACA+AGG - chr2.2:61241077-61241096 None:intergenic 25.0%
!! AATTTTGTGTTCTCAATCTT+TGG - chr2.2:61239380-61239399 None:intergenic 25.0%
!! ATTGTGTTCTTCAAACATTT+TGG + chr2.2:61239017-61239036 MS.gene003048:intron 25.0%
!! ATTTTATTCGCAGTATTTGT+TGG - chr2.2:61237779-61237798 None:intergenic 25.0%
!! ATTTTGTGTTCTCAATCTTT+GGG - chr2.2:61239379-61239398 None:intergenic 25.0%
!! CCACATATAAACACATTTTT+GGG - chr2.2:61238193-61238212 None:intergenic 25.0%
!! CTTTCTTTTGTATTAGAAAC+AGG + chr2.2:61236806-61236825 MS.gene003048:intron 25.0%
!! TCCACATATAAACACATTTT+TGG - chr2.2:61238194-61238213 None:intergenic 25.0%
!! TGAATGATCTAATTTAAGGT+AGG + chr2.2:61240989-61241008 MS.gene003048:intron 25.0%
!! TTGTTTTCATAAGCTATCTT+GGG - chr2.2:61241238-61241257 None:intergenic 25.0%
!!! ATATTACAAGACAGTTTTGT+AGG + chr2.2:61238423-61238442 MS.gene003048:intron 25.0%
!!! TGATGTAAAATGTTGTTTTC+AGG + chr2.2:61240053-61240072 MS.gene003048:intron 25.0%
AAAAAGAAGAAAACAGGAGA+GGG - chr2.2:61239183-61239202 None:intergenic 30.0%
AAACACAACAGTGTACAAAA+AGG - chr2.2:61240779-61240798 None:intergenic 30.0%
AATAAGCTGAAAACAGCTTA+TGG - chr2.2:61241211-61241230 None:intergenic 30.0%
AGAATCAGATTTCAAGGTTA+TGG - chr2.2:61237847-61237866 None:intergenic 30.0%
ATAAGCTGAAAACAGCTTAT+GGG - chr2.2:61241210-61241229 None:intergenic 30.0%
ATGTCGTTGGATAGTAAAAA+GGG + chr2.2:61239625-61239644 MS.gene003048:intron 30.0%
ATTAAACGGTTATCCAAACA+AGG + chr2.2:61237217-61237236 MS.gene003048:intron 30.0%
ATTACTTGTACTATGCACTT+TGG - chr2.2:61238639-61238658 None:intergenic 30.0%
ATTTGACTGTCTTAACACTT+GGG + chr2.2:61240233-61240252 MS.gene003048:intron 30.0%
CAACATTGTACATTCTTTGA+GGG - chr2.2:61237998-61238017 None:intergenic 30.0%
CAACTGAGATAAATAGGTAA+AGG - chr2.2:61240957-61240976 None:intergenic 30.0%
CCCAAAAATGTGTTTATATG+TGG + chr2.2:61238190-61238209 MS.gene003048:intron 30.0%
CCTAATAGAATCAGATTTCA+AGG - chr2.2:61237853-61237872 None:intergenic 30.0%
CCTTGAAATCTGATTCTATT+AGG + chr2.2:61237850-61237869 MS.gene003048:intron 30.0%
CGTTAAATCATCAAAACCAT+TGG + chr2.2:61236885-61236904 MS.gene003048:intron 30.0%
CTAATTGTGAATGTAGCATT+GGG - chr2.2:61238760-61238779 None:intergenic 30.0%
CTCTAGATATACAGAATTGA+GGG + chr2.2:61238335-61238354 MS.gene003048:intron 30.0%
CTTAATGTATTTGTGCACAA+TGG + chr2.2:61241372-61241391 MS.gene003048:intron 30.0%
CTTACTTCATTATTCATGGT+TGG - chr2.2:61238720-61238739 None:intergenic 30.0%
GAATTTGAACAATTCGCTAT+TGG - chr2.2:61240632-61240651 None:intergenic 30.0%
GACAATACATTAAAGCTTTG+AGG - chr2.2:61237931-61237950 None:intergenic 30.0%
GGTTGAAAATGGTATACATA+AGG + chr2.2:61240118-61240137 MS.gene003048:CDS 30.0%
GTAAGTTGTTCATCTTAACA+TGG + chr2.2:61236667-61236686 MS.gene003048:intron 30.0%
GTATACATAAGGACTGAAAA+AGG + chr2.2:61240129-61240148 MS.gene003048:CDS 30.0%
GTATTCCAAGAACATTCAAA+CGG + chr2.2:61240181-61240200 MS.gene003048:CDS 30.0%
TAAGCATTTGTGAGACTATT+TGG + chr2.2:61241156-61241175 MS.gene003048:intron 30.0%
TACACAGATGATTATATAGC+TGG + chr2.2:61241043-61241062 MS.gene003048:CDS 30.0%
TATATATGCTCTTAACGGTT+TGG - chr2.2:61238983-61239002 None:intergenic 30.0%
TATCAGCTAAAAATTTACCC+TGG - chr2.2:61236964-61236983 None:intergenic 30.0%
TATTTGACTGTCTTAACACT+TGG + chr2.2:61240232-61240251 MS.gene003048:intron 30.0%
TCATTTGATTAGATAGACAG+TGG + chr2.2:61240720-61240739 MS.gene003048:intron 30.0%
TGCATTAGAGTAAAACTACA+TGG - chr2.2:61239079-61239098 None:intergenic 30.0%
TGTCAGAAAAAGAAGAAAAC+AGG - chr2.2:61239189-61239208 None:intergenic 30.0%
TTCAAGCTTTCACTATATTG+TGG - chr2.2:61238938-61238957 None:intergenic 30.0%
TTTAGAGACTATGTGAATGA+AGG - chr2.2:61237243-61237262 None:intergenic 30.0%
! AAAAACGAGACAAAGTTTTG+GGG + chr2.2:61239960-61239979 MS.gene003048:intron 30.0%
! ACAAAAACGAGACAAAGTTT+TGG + chr2.2:61239958-61239977 MS.gene003048:intron 30.0%
! AGAGATTATTCATTTTCCTC+AGG - chr2.2:61240295-61240314 None:intergenic 30.0%
! ATTGATTTCACAGAAAGTAG+AGG + chr2.2:61237045-61237064 MS.gene003048:intron 30.0%
! CAAAAACGAGACAAAGTTTT+GGG + chr2.2:61239959-61239978 MS.gene003048:intron 30.0%
! GCTTATTTGAGTTTATGTAC+TGG + chr2.2:61236436-61236455 MS.gene003048:intron 30.0%
! GTTTTTATGTTCTATCCCAT+TGG - chr2.2:61239289-61239308 None:intergenic 30.0%
! TAGTTTTCGGACCAAATTTA+AGG - chr2.2:61241093-61241112 None:intergenic 30.0%
! TCCTTTTAAATCAAGCTAAC+CGG - chr2.2:61238796-61238815 None:intergenic 30.0%
! TCGCTATTCTTTTCATTCAA+AGG - chr2.2:61236197-61236216 None:intergenic 30.0%
! TCTTTTTCTGACAGTTATTG+CGG + chr2.2:61239196-61239215 MS.gene003048:intron 30.0%
! TGTTTTCTGATTTCAGTTTC+TGG + chr2.2:61241427-61241446 MS.gene003048:intron 30.0%
! TTTTCATTCAAAGGAGCAAT+TGG - chr2.2:61236188-61236207 None:intergenic 30.0%
!! ATTGATTGTGATTTGTTTCC+AGG + chr2.2:61236943-61236962 MS.gene003048:intron 30.0%
!! GTTGTTTTCATAAGCTATCT+TGG - chr2.2:61241239-61241258 None:intergenic 30.0%
!! TGAAAAAGGTGTTCTTATAG+AGG + chr2.2:61240143-61240162 MS.gene003048:CDS 30.0%
!! TGTTCTTCAAACATTTTGGT+CGG + chr2.2:61239021-61239040 MS.gene003048:intron 30.0%
!! TTGATTGTGATTTGTTTCCA+GGG + chr2.2:61236944-61236963 MS.gene003048:intron 30.0%
!! TTTATCACCATTTTTCGTTG+AGG + chr2.2:61239737-61239756 MS.gene003048:intron 30.0%
!! TTTGAGACACTTCTGATTTT+TGG + chr2.2:61239838-61239857 MS.gene003048:intron 30.0%
!!! GAGTCATTTTTTAAACCATC+AGG - chr2.2:61240479-61240498 None:intergenic 30.0%
!!! GTAAGTTTTTTCACTCAAAC+AGG + chr2.2:61236376-61236395 MS.gene003048:intron 30.0%
!!! TATACATTGTTGTTTTGCAG+TGG + chr2.2:61240328-61240347 MS.gene003048:intron 30.0%
AAAAGAAGAAAACAGGAGAG+GGG - chr2.2:61239182-61239201 None:intergenic 35.0%
AAATTGAGTATAACTGCTGC+TGG + chr2.2:61240362-61240381 MS.gene003048:CDS 35.0%
AACAAAGCATAGAACAGAGT+TGG + chr2.2:61239328-61239347 MS.gene003048:intron 35.0%
AAGGATTACCAATGCTATTG+AGG + chr2.2:61241480-61241499 MS.gene003048:CDS 35.0%
ACGTTGCTAACAAAACTACT+TGG + chr2.2:61237700-61237719 MS.gene003048:intron 35.0%
AGCAGCATAAACATCAAACT+AGG - chr2.2:61237622-61237641 None:intergenic 35.0%
AGGAATTCGAAAATTGAGCT+AGG - chr2.2:61240937-61240956 None:intergenic 35.0%
AGGATTACCAATGCTATTGA+GGG + chr2.2:61241481-61241500 MS.gene003048:CDS 35.0%
ATACAGTAAGCAGCACTTAA+AGG - chr2.2:61241457-61241476 None:intergenic 35.0%
ATAGCAAGCTCAACAAATCT+TGG - chr2.2:61238297-61238316 None:intergenic 35.0%
ATCCATAAACTGAACCAAAC+TGG - chr2.2:61239865-61239884 None:intergenic 35.0%
ATCTGGGAGAACTTATGAAA+AGG + chr2.2:61236693-61236712 MS.gene003048:intron 35.0%
ATGCATGTGAAGCAAAAATC+TGG - chr2.2:61238870-61238889 None:intergenic 35.0%
ATTGCTAAAAAGCCCTTTGA+GGG - chr2.2:61238574-61238593 None:intergenic 35.0%
CATCTTAACATGGCTTATCT+GGG + chr2.2:61236677-61236696 MS.gene003048:intron 35.0%
CATGTCGTTGGATAGTAAAA+AGG + chr2.2:61239624-61239643 MS.gene003048:intron 35.0%
CCAACATTGTACATTCTTTG+AGG - chr2.2:61237999-61238018 None:intergenic 35.0%
CCTCAAAGAATGTACAATGT+TGG + chr2.2:61237996-61238015 MS.gene003048:intron 35.0%
CTCCTACTTATAACAGTTTC+AGG - chr2.2:61238394-61238413 None:intergenic 35.0%
CTTCTTCTTCTTCTTGTTCA+TGG - chr2.2:61236058-61236077 None:intergenic 35.0%
GAAAAAGAAGAAAACAGGAG+AGG - chr2.2:61239184-61239203 None:intergenic 35.0%
GAAAAGAATAGCGAGAAACA+AGG + chr2.2:61236203-61236222 MS.gene003048:CDS 35.0%
GAAAGCTTGAATCATCACTT+CGG + chr2.2:61238947-61238966 MS.gene003048:intron 35.0%
GATCGCAGAAAATAACAGTT+CGG + chr2.2:61240519-61240538 MS.gene003048:intron 35.0%
GATTAGATAGACAGTGGAAT+TGG + chr2.2:61240726-61240745 MS.gene003048:intron 35.0%
GCTAATTGTGAATGTAGCAT+TGG - chr2.2:61238761-61238780 None:intergenic 35.0%
GCTATAACCGCTTGATTAAA+CGG + chr2.2:61237203-61237222 MS.gene003048:intron 35.0%
GGAATTCGAAAATTGAGCTA+GGG - chr2.2:61240936-61240955 None:intergenic 35.0%
GTTCTTGGAATACGAACATA+GGG - chr2.2:61240174-61240193 None:intergenic 35.0%
TAAAAGGACAAAGTATGTCC+TGG + chr2.2:61238808-61238827 MS.gene003048:intron 35.0%
TACAGTAAGCAGCACTTAAA+GGG - chr2.2:61241456-61241475 None:intergenic 35.0%
TCAAATTAGCCAATCCAAAC+AGG - chr2.2:61241121-61241140 None:intergenic 35.0%
TCAACAATTGACAACACTGA+AGG - chr2.2:61240501-61240520 None:intergenic 35.0%
TCATAACCGAGTCAAAAACT+TGG - chr2.2:61238104-61238123 None:intergenic 35.0%
TCATCTTAACATGGCTTATC+TGG + chr2.2:61236676-61236695 MS.gene003048:intron 35.0%
TGACAACACTGATATCATGA+AGG + chr2.2:61240684-61240703 MS.gene003048:intron 35.0%
TGGATAACCGTTTAATCAAG+CGG - chr2.2:61237213-61237232 None:intergenic 35.0%
TGTTCTTGGAATACGAACAT+AGG - chr2.2:61240175-61240194 None:intergenic 35.0%
TTCACTCAAACAGGACTTAA+GGG + chr2.2:61236385-61236404 MS.gene003048:intron 35.0%
TTTAGCACCTCAACGAAAAA+TGG - chr2.2:61239747-61239766 None:intergenic 35.0%
TTTCACTCAAACAGGACTTA+AGG + chr2.2:61236384-61236403 MS.gene003048:intron 35.0%
! CTAATTTAAGGTAGGAGCAA+TGG + chr2.2:61240997-61241016 MS.gene003048:intron 35.0%
! GCTCTAGATATACAGAATTG+AGG + chr2.2:61238334-61238353 MS.gene003048:intron 35.0%
! TAGTTATTGTTGTTGCCTGA+TGG + chr2.2:61240461-61240480 MS.gene003048:intron 35.0%
! TCAGATCGTTTAGAGTCTAT+AGG - chr2.2:61236582-61236601 None:intergenic 35.0%
! TCTTTAGAAGTCGCTAAAGT+TGG + chr2.2:61236251-61236270 MS.gene003048:CDS 35.0%
! TTTTCATAAGCTATCTTGGG+AGG - chr2.2:61241235-61241254 None:intergenic 35.0%
!! AAAACGAGACAAAGTTTTGG+GGG + chr2.2:61239961-61239980 MS.gene003048:intron 35.0%
!! CAAACAGGCTTCTTAGTTTT+CGG - chr2.2:61241106-61241125 None:intergenic 35.0%
!! GATTTGTTGAGCTTGCTATT+AGG + chr2.2:61238298-61238317 MS.gene003048:intron 35.0%
!! TGACTTTGTTGGGTTGATTA+AGG + chr2.2:61238236-61238255 MS.gene003048:intron 35.0%
!! TGCAAGGTGTTGTTAAATAG+TGG - chr2.2:61240591-61240610 None:intergenic 35.0%
!! TTCTGACGATTTGGTTTCTT+CGG - chr2.2:61236104-61236123 None:intergenic 35.0%
!!! ATCTTTTAGTTCAGAGAAGC+TGG + chr2.2:61240849-61240868 MS.gene003048:CDS 35.0%
!!! CAACTTATTTTTATGAGCCC+TGG + chr2.2:61236743-61236762 MS.gene003048:intron 35.0%
!!! TTCATTTTAGCTATCCTCCA+GGG - chr2.2:61236763-61236782 None:intergenic 35.0%
!!! TTCTGATTTTTGGTCCAGTT+TGG + chr2.2:61239848-61239867 MS.gene003048:intron 35.0%
!!! TTTCATTTTAGCTATCCTCC+AGG - chr2.2:61236764-61236783 None:intergenic 35.0%
AAAGGAGCAATTGGAATACC+AGG - chr2.2:61236179-61236198 None:intergenic 40.0%
AACAAAGTCAGCTTGTAGGT+TGG - chr2.2:61238226-61238245 None:intergenic 40.0%
AAGCATCTCACACTTCTCTT+TGG - chr2.2:61239527-61239546 None:intergenic 40.0%
AATAGCAACAGCAACAACAG+AGG + chr2.2:61236142-61236161 MS.gene003048:CDS 40.0%
AATTAGCCAACTATCAGTGC+CGG + chr2.2:61238774-61238793 MS.gene003048:intron 40.0%
ACAAAGTCAGCTTGTAGGTT+GGG - chr2.2:61238225-61238244 None:intergenic 40.0%
ACATATGAATGGCAGTGAAG+AGG + chr2.2:61238668-61238687 MS.gene003048:intron 40.0%
ACCTTGCACTAATAGTTGGT+GGG + chr2.2:61240603-61240622 MS.gene003048:intron 40.0%
ACGAGAGCTTACACTGTAAA+GGG + chr2.2:61235993-61236012 MS.gene003048:CDS 40.0%
ACTAAGAAGCCTGTTTGGAT+TGG + chr2.2:61241109-61241128 MS.gene003048:intron 40.0%
AGAGTTGGAGATGCTCTAAT+AGG + chr2.2:61239343-61239362 MS.gene003048:intron 40.0%
AGCACTGTGTATACTATTGC+TGG + chr2.2:61238543-61238562 MS.gene003048:intron 40.0%
AGCATCTCACACTTCTCTTT+GGG - chr2.2:61239526-61239545 None:intergenic 40.0%
ATAGCCCGCTAAATAAAGCT+GGG + chr2.2:61240094-61240113 MS.gene003048:CDS 40.0%
CAACACCTTGCACTAATAGT+TGG + chr2.2:61240599-61240618 MS.gene003048:intron 40.0%
CGAAAACTAAGAAGCCTGTT+TGG + chr2.2:61241104-61241123 MS.gene003048:intron 40.0%
GAATCCACATATGGCAATGA+TGG - chr2.2:61239048-61239067 None:intergenic 40.0%
GATTGCTAAAAAGCCCTTTG+AGG - chr2.2:61238575-61238594 None:intergenic 40.0%
GCTGTTCTTGAATCCACATA+TGG - chr2.2:61239057-61239076 None:intergenic 40.0%
GCTTAGCTTAGCTAAATGTG+AGG - chr2.2:61237888-61237907 None:intergenic 40.0%
GGCAGTGTGTATGACTTTAA+AGG + chr2.2:61239787-61239806 MS.gene003048:intron 40.0%
GGCCTGAAACTGTTATAAGT+AGG + chr2.2:61238389-61238408 MS.gene003048:intron 40.0%
GTCAACAATTCCAAGCAATC+AGG + chr2.2:61240891-61240910 MS.gene003048:CDS 40.0%
GTGCTAAAACTCTAGGTTGT+TGG + chr2.2:61239759-61239778 MS.gene003048:intron 40.0%
TAAAGCTGGGAGGTTGAAAA+TGG + chr2.2:61240107-61240126 MS.gene003048:CDS 40.0%
TAACCGAGTCAAAAACTTGG+TGG - chr2.2:61238101-61238120 None:intergenic 40.0%
TACTGACCAAGTCAATGTCA+GGG + chr2.2:61238612-61238631 MS.gene003048:intron 40.0%
TATATTGTGGAGAAGCTGAG+TGG - chr2.2:61238925-61238944 None:intergenic 40.0%
TATGTTCTATCCCATTGGAG+TGG - chr2.2:61239284-61239303 None:intergenic 40.0%
TGTGAGATGCTTCCATATAG+AGG + chr2.2:61239535-61239554 MS.gene003048:intron 40.0%
TTATGCTGCTAGATACCACT+AGG + chr2.2:61237632-61237651 MS.gene003048:intron 40.0%
! AACCTACAAGCTGACTTTGT+TGG + chr2.2:61238225-61238244 MS.gene003048:intron 40.0%
! ACAGAATTGAGGGTGTGTTT+AGG + chr2.2:61238345-61238364 MS.gene003048:intron 40.0%
! ACCTACAAGCTGACTTTGTT+GGG + chr2.2:61238226-61238245 MS.gene003048:intron 40.0%
! CAGAATTGAGGGTGTGTTTA+GGG + chr2.2:61238346-61238365 MS.gene003048:intron 40.0%
! CAGGATTCTTGCTATGTTTG+CGG - chr2.2:61237521-61237540 None:intergenic 40.0%
! CTAAAGTTGGCAAGGTACTT+TGG + chr2.2:61236264-61236283 MS.gene003048:intron 40.0%
! CTTTAAAGGCTTGAAGACCA+TGG + chr2.2:61239801-61239820 MS.gene003048:intron 40.0%
! GTCCAGTTTGGTTCAGTTTA+TGG + chr2.2:61239860-61239879 MS.gene003048:intron 40.0%
! TAGTGTTTTCCCGATTCAAG+CGG - chr2.2:61237668-61237687 None:intergenic 40.0%
! TCTGTTGTTGCTGTTGCTAT+TGG - chr2.2:61236143-61236162 None:intergenic 40.0%
! TGTTCTATGCTTTGTTCTCG+AGG - chr2.2:61239324-61239343 None:intergenic 40.0%
!! AACCTCCCAGCTTTATTTAG+CGG - chr2.2:61240102-61240121 None:intergenic 40.0%
!! AACTCTAGGTTGTTGGTTCA+AGG + chr2.2:61239766-61239785 MS.gene003048:intron 40.0%
!! ATGTGAATGAAGGCCTTGTT+TGG - chr2.2:61237233-61237252 None:intergenic 40.0%
!! GCCGGTTAGCTTGATTTAAA+AGG + chr2.2:61238792-61238811 MS.gene003048:intron 40.0%
!! GTGCTGCTTACTGTATTACA+AGG + chr2.2:61241461-61241480 MS.gene003048:CDS 40.0%
!!! AGTTTTGGTCTTGTAGCTAG+GGG - chr2.2:61239916-61239935 None:intergenic 40.0%
!!! CAGTTTTGGTCTTGTAGCTA+GGG - chr2.2:61239917-61239936 None:intergenic 40.0%
!!! CTTATTTTTATGAGCCCTGG+AGG + chr2.2:61236746-61236765 MS.gene003048:intron 40.0%
!!! TCAGTTTTGGTCTTGTAGCT+AGG - chr2.2:61239918-61239937 None:intergenic 40.0%
!!! TTACGGGGTTTTTTATCGTG+CGG - chr2.2:61240406-61240425 None:intergenic 40.0%
AACGACATGTCTCCATCAGA+CGG - chr2.2:61239613-61239632 None:intergenic 45.0%
AAGACAAGGTCCTGATTGCT+TGG - chr2.2:61240904-61240923 None:intergenic 45.0%
ACAGAGGAATCTGAACTTCC+TGG + chr2.2:61236158-61236177 MS.gene003048:CDS 45.0%
ACCCAACAAAGTCAGCTTGT+AGG - chr2.2:61238230-61238249 None:intergenic 45.0%
AGAACATTCAAACGGTTCGC+TGG + chr2.2:61240189-61240208 MS.gene003048:CDS 45.0%
AGAAGTCGCTAAAGTTGGCA+AGG + chr2.2:61236256-61236275 MS.gene003048:CDS 45.0%
ATAGCAGCGCTATAGCAAAG+CGG - chr2.2:61240654-61240673 None:intergenic 45.0%
ATGTCAGGTCTGTAATCACC+AGG - chr2.2:61237540-61237559 None:intergenic 45.0%
CAAAGTCAGCTTGTAGGTTG+GGG - chr2.2:61238224-61238243 None:intergenic 45.0%
CAATCAACATGAGACATGCC+AGG - chr2.2:61238829-61238848 None:intergenic 45.0%
CAATCAGGACCTTGTCTTTG+TGG + chr2.2:61240906-61240925 MS.gene003048:CDS 45.0%
CACCTTGCACTAATAGTTGG+TGG + chr2.2:61240602-61240621 MS.gene003048:intron 45.0%
CAGACCTGACATTTGTCATC+AGG + chr2.2:61237548-61237567 MS.gene003048:CDS 45.0%
CCAACCTGATGACAAATGTC+AGG - chr2.2:61237555-61237574 None:intergenic 45.0%
CCAATGCTATTGAGGGAAAG+TGG + chr2.2:61241488-61241507 MS.gene003048:CDS 45.0%
CCACTTTCCCTCAATAGCAT+TGG - chr2.2:61241491-61241510 None:intergenic 45.0%
CCATGTCATTCCACTCCAAT+GGG + chr2.2:61239271-61239290 MS.gene003048:intron 45.0%
CCTGACATTTGTCATCAGGT+TGG + chr2.2:61237552-61237571 MS.gene003048:intron 45.0%
CGAGAGCTTACACTGTAAAG+GGG + chr2.2:61235994-61236013 MS.gene003048:CDS 45.0%
CGCAAACATAGCAAGAATCC+TGG + chr2.2:61237519-61237538 MS.gene003048:CDS 45.0%
CGTACACACACAGAAAGTAG+AGG + chr2.2:61237085-61237104 MS.gene003048:intron 45.0%
CTACTGACCAAGTCAATGTC+AGG + chr2.2:61238611-61238630 MS.gene003048:intron 45.0%
GAAACCAAATCGTCAGAACG+AGG + chr2.2:61236106-61236125 MS.gene003048:CDS 45.0%
GAATGACATGGAAGCCATGT+TGG - chr2.2:61239262-61239281 None:intergenic 45.0%
GACGAGAGCTTACACTGTAA+AGG + chr2.2:61235992-61236011 MS.gene003048:CDS 45.0%
GATAGCCCGCTAAATAAAGC+TGG + chr2.2:61240093-61240112 MS.gene003048:CDS 45.0%
GCGAACCGTTTGAATGTTCT+TGG - chr2.2:61240189-61240208 None:intergenic 45.0%
TATTCTAAGTGGGTCCCACA+CGG + chr2.2:61239123-61239142 MS.gene003048:intron 45.0%
TCCATGTCATTCCACTCCAA+TGG + chr2.2:61239270-61239289 MS.gene003048:intron 45.0%
TCCCACCAACTATTAGTGCA+AGG - chr2.2:61240607-61240626 None:intergenic 45.0%
TCTCACACTTCTCTTTGGGT+TGG - chr2.2:61239522-61239541 None:intergenic 45.0%
TGTTCCTCGTTCTGACGATT+TGG - chr2.2:61236113-61236132 None:intergenic 45.0%
TTGTTCATGGTCGTGCTTTG+TGG - chr2.2:61236045-61236064 None:intergenic 45.0%
! AAAGTCAGCTTGTAGGTTGG+GGG - chr2.2:61238223-61238242 None:intergenic 45.0%
! AGAGTTGACGGGCAAATACT+GGG - chr2.2:61240429-61240448 None:intergenic 45.0%
! AGTGTTTTCCCGATTCAAGC+GGG - chr2.2:61237667-61237686 None:intergenic 45.0%
! CGTTGAGGTGCTAAAACTCT+AGG + chr2.2:61239752-61239771 MS.gene003048:intron 45.0%
! GATTCTTGCTATGTTTGCGG+AGG - chr2.2:61237518-61237537 None:intergenic 45.0%
! GTACATTCTTTGAGGGAGAG+AGG - chr2.2:61237991-61238010 None:intergenic 45.0%
! TGTTGGCTAATGCAGTCGAA+TGG - chr2.2:61237762-61237781 None:intergenic 45.0%
! TTTAGGGTCCCACATTGGAT+GGG + chr2.2:61238362-61238381 MS.gene003048:intron 45.0%
! TTTGGACCCTGACATTGACT+TGG - chr2.2:61238621-61238640 None:intergenic 45.0%
!! ACCTCCCAGCTTTATTTAGC+GGG - chr2.2:61240101-61240120 None:intergenic 45.0%
!! ACCTGCTTTTCGAGAGTTGA+CGG - chr2.2:61240441-61240460 None:intergenic 45.0%
!! CGACCACCAAGTTTTTGACT+CGG + chr2.2:61238095-61238114 MS.gene003048:intron 45.0%
!! CGATTTGGTTTCTTCGGTGT+TGG - chr2.2:61236098-61236117 None:intergenic 45.0%
!! GGAAGAGCGCTTAATTACTG+TGG - chr2.2:61237910-61237929 None:intergenic 45.0%
!! TAGGGAGTACCACAAAGACA+AGG - chr2.2:61240918-61240937 None:intergenic 45.0%
!! AAAAAAAAAAAAATGTATTT+CGG - chr2.2:61238069-61238088 None:intergenic 5.0%
AAAACAGGAGAGGGGAAGTG+GGG - chr2.2:61239174-61239193 None:intergenic 50.0%
AAGGTAGGAGCAATGGCACA+TGG + chr2.2:61241004-61241023 MS.gene003048:intron 50.0%
ACCGTTCTCCCTGAAGAACA+CGG - chr2.2:61239236-61239255 None:intergenic 50.0%
ACGACATGTCTCCATCAGAC+GGG - chr2.2:61239612-61239631 None:intergenic 50.0%
ACGGGCAAATACTGGGTTAC+GGG - chr2.2:61240422-61240441 None:intergenic 50.0%
AGAAAACAGGAGAGGGGAAG+TGG - chr2.2:61239176-61239195 None:intergenic 50.0%
AGAACAGACCCCGCTTGAAT+CGG + chr2.2:61237655-61237674 MS.gene003048:intron 50.0%
AGAGAGGAACCCTTCCAATC+AGG - chr2.2:61237975-61237994 None:intergenic 50.0%
AGGCCATATCCCATCCAATG+TGG - chr2.2:61238374-61238393 None:intergenic 50.0%
AGGTAGGAGCAATGGCACAT+GGG + chr2.2:61241005-61241024 MS.gene003048:intron 50.0%
AGTGTTCTCCCGTGTTCTTC+AGG + chr2.2:61239224-61239243 MS.gene003048:intron 50.0%
ATATAGAGGCCACGACGATG+GGG + chr2.2:61239549-61239568 MS.gene003048:intron 50.0%
ATGCCTTTAGTCGTCAGCCT+CGG - chr2.2:61239585-61239604 None:intergenic 50.0%
ATTGCTGGCATCTCCCTCAA+AGG + chr2.2:61238558-61238577 MS.gene003048:intron 50.0%
CATATAGAGGCCACGACGAT+GGG + chr2.2:61239548-61239567 MS.gene003048:intron 50.0%
CCCATTGGAGTGGAATGACA+TGG - chr2.2:61239274-61239293 None:intergenic 50.0%
CGGTCCATCATTGCCATATG+TGG + chr2.2:61239041-61239060 MS.gene003048:intron 50.0%
CTACCATGGCCTGATTGGAA+GGG + chr2.2:61237963-61237982 MS.gene003048:intron 50.0%
GAAAACAGGAGAGGGGAAGT+GGG - chr2.2:61239175-61239194 None:intergenic 50.0%
GACGGGCAAATACTGGGTTA+CGG - chr2.2:61240423-61240442 None:intergenic 50.0%
GGCCATATCCCATCCAATGT+GGG - chr2.2:61238373-61238392 None:intergenic 50.0%
GTCCCACATTGGATGGGATA+TGG + chr2.2:61238368-61238387 MS.gene003048:intron 50.0%
GTCTGATGGAGACATGTCGT+TGG + chr2.2:61239612-61239631 MS.gene003048:intron 50.0%
GTGTTCTCCCGTGTTCTTCA+GGG + chr2.2:61239225-61239244 MS.gene003048:intron 50.0%
TCTTGTTCCACAGCCTACCA+TGG + chr2.2:61237949-61237968 MS.gene003048:intron 50.0%
TTGCTGGCATCTCCCTCAAA+GGG + chr2.2:61238559-61238578 MS.gene003048:intron 50.0%
! GAGAGTTGACGGGCAAATAC+TGG - chr2.2:61240430-61240449 None:intergenic 50.0%
! GCTAGGGGTGTGCAAAAATG+TGG - chr2.2:61239901-61239920 None:intergenic 50.0%
! GTGTGTTTAGGGTCCCACAT+TGG + chr2.2:61238357-61238376 MS.gene003048:intron 50.0%
! GTGTTTTCCCGATTCAAGCG+GGG - chr2.2:61237666-61237685 None:intergenic 50.0%
! GTTTAGGGTCCCACATTGGA+TGG + chr2.2:61238361-61238380 MS.gene003048:intron 50.0%
! TATCTAGAGCGTGATCCGAG+TGG - chr2.2:61238324-61238343 None:intergenic 50.0%
!! AGCTAACCGGCACTGATAGT+TGG - chr2.2:61238783-61238802 None:intergenic 50.0%
!! CACACTTCTCTTTGGGTTGG+TGG - chr2.2:61239519-61239538 None:intergenic 50.0%
!! CCTGCTTTTCGAGAGTTGAC+GGG - chr2.2:61240440-61240459 None:intergenic 50.0%
!! GAGCTTGCTATTAGGCCACT+CGG + chr2.2:61238306-61238325 MS.gene003048:intron 50.0%
AATCAGGCCATGGTAGGCTG+TGG - chr2.2:61237959-61237978 None:intergenic 55.0%
ACAGCCTACCATGGCCTGAT+TGG + chr2.2:61237958-61237977 MS.gene003048:intron 55.0%
AGGAGCAATGGCACATGGGA+AGG + chr2.2:61241009-61241028 MS.gene003048:CDS 55.0%
CCATATAGAGGCCACGACGA+TGG + chr2.2:61239547-61239566 MS.gene003048:intron 55.0%
CCATCGTCGTGGCCTCTATA+TGG - chr2.2:61239550-61239569 None:intergenic 55.0%
CCCGTCAACTCTCGAAAAGC+AGG + chr2.2:61240437-61240456 MS.gene003048:CDS 55.0%
CCCGTGTTCTTCAGGGAGAA+CGG + chr2.2:61239232-61239251 MS.gene003048:intron 55.0%
CCGTTCTCCCTGAAGAACAC+GGG - chr2.2:61239235-61239254 None:intergenic 55.0%
CCTACCATGGCCTGATTGGA+AGG + chr2.2:61237962-61237981 MS.gene003048:intron 55.0%
CCTTCCAATCAGGCCATGGT+AGG - chr2.2:61237965-61237984 None:intergenic 55.0%
CGACATGTCTCCATCAGACG+GGG - chr2.2:61239611-61239630 None:intergenic 55.0%
CGGGCAAATACTGGGTTACG+GGG - chr2.2:61240421-61240440 None:intergenic 55.0%
CTGGGGAAGGAAAACCGTGT+GGG - chr2.2:61239140-61239159 None:intergenic 55.0%
GAACAGACCCCGCTTGAATC+GGG + chr2.2:61237656-61237675 MS.gene003048:intron 55.0%
GAACCCTTCCAATCAGGCCA+TGG - chr2.2:61237969-61237988 None:intergenic 55.0%
GCCCGCTAAATAAAGCTGGG+AGG + chr2.2:61240097-61240116 MS.gene003048:CDS 55.0%
GGGAGAACGGTTCTCCAACA+TGG + chr2.2:61239245-61239264 MS.gene003048:intron 55.0%
TATAGAGGCCACGACGATGG+GGG + chr2.2:61239550-61239569 MS.gene003048:intron 55.0%
TGTCCGAGGCTGACGACTAA+AGG + chr2.2:61239579-61239598 MS.gene003048:intron 55.0%
TTAGTCGTCAGCCTCGGACA+CGG - chr2.2:61239579-61239598 None:intergenic 55.0%
!! AAGGCATTGTCCCCGTCTGA+TGG + chr2.2:61239598-61239617 MS.gene003048:intron 55.0%
AGCGGGGTCTGTTCTCCTAG+TGG - chr2.2:61237650-61237669 None:intergenic 60.0%
CGACAGTGCCAGTGAAGGAG+AGG + chr2.2:61239493-61239512 MS.gene003048:intron 60.0%
GCTGGGGAAGGAAAACCGTG+TGG - chr2.2:61239141-61239160 None:intergenic 60.0%
GTGTGCGACAGTGCCAGTGA+AGG + chr2.2:61239488-61239507 MS.gene003048:intron 60.0%
!! GTTGGTGGCCTCTCCTTCAC+TGG - chr2.2:61239504-61239523 None:intergenic 60.0%
ACAGGAGAGGGGAAGTGGGG+TGG - chr2.2:61239171-61239190 None:intergenic 65.0%
AGGAGAGGGGAAGTGGGGTG+GGG - chr2.2:61239169-61239188 None:intergenic 65.0%
CAGGAGAGGGGAAGTGGGGT+GGG - chr2.2:61239170-61239189 None:intergenic 65.0%
AGAGGCCACGACGATGGGGG+AGG + chr2.2:61239553-61239572 MS.gene003048:intron 70.0%
AAGTGGGGTGGGGCTGCGGC+TGG - chr2.2:61239159-61239178 None:intergenic 75.0%
AGTGGGGTGGGGCTGCGGCT+GGG - chr2.2:61239158-61239177 None:intergenic 75.0%
CACGGCCTCCCCCATCGTCG+TGG - chr2.2:61239561-61239580 None:intergenic 75.0%
GATGGGGGAGGCCGTGTCCG+AGG + chr2.2:61239565-61239584 MS.gene003048:intron 75.0%
GGGGAAGTGGGGTGGGGCTG+CGG - chr2.2:61239163-61239182 None:intergenic 75.0%
! GGTGGGGCTGCGGCTGGGGA+AGG - chr2.2:61239153-61239172 None:intergenic 80.0%
! GTGGGGTGGGGCTGCGGCTG+GGG - chr2.2:61239157-61239176 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr2.2 gene 61235990 61241522 61235990 ID=MS.gene003048
chr2.2 mRNA 61235990 61241522 61235990 ID=MS.gene003048.t1;Parent=MS.gene003048
chr2.2 exon 61235990 61236277 61235990 ID=MS.gene003048.t1.exon1;Parent=MS.gene003048.t1
chr2.2 CDS 61235990 61236277 61235990 ID=cds.MS.gene003048.t1;Parent=MS.gene003048.t1
chr2.2 exon 61237477 61237569 61237477 ID=MS.gene003048.t1.exon2;Parent=MS.gene003048.t1
chr2.2 CDS 61237477 61237569 61237477 ID=cds.MS.gene003048.t1;Parent=MS.gene003048.t1
chr2.2 exon 61240075 61240219 61240075 ID=MS.gene003048.t1.exon3;Parent=MS.gene003048.t1
chr2.2 CDS 61240075 61240219 61240075 ID=cds.MS.gene003048.t1;Parent=MS.gene003048.t1
chr2.2 exon 61240348 61240458 61240348 ID=MS.gene003048.t1.exon4;Parent=MS.gene003048.t1
chr2.2 CDS 61240348 61240458 61240348 ID=cds.MS.gene003048.t1;Parent=MS.gene003048.t1
chr2.2 exon 61240845 61240927 61240845 ID=MS.gene003048.t1.exon5;Parent=MS.gene003048.t1
chr2.2 CDS 61240845 61240927 61240845 ID=cds.MS.gene003048.t1;Parent=MS.gene003048.t1
chr2.2 exon 61241007 61241064 61241007 ID=MS.gene003048.t1.exon6;Parent=MS.gene003048.t1
chr2.2 CDS 61241007 61241064 61241007 ID=cds.MS.gene003048.t1;Parent=MS.gene003048.t1
chr2.2 exon 61241443 61241522 61241443 ID=MS.gene003048.t1.exon7;Parent=MS.gene003048.t1
chr2.2 CDS 61241443 61241522 61241443 ID=cds.MS.gene003048.t1;Parent=MS.gene003048.t1
Gene Sequence

>MS.gene003048

ATGACGAGAGCTTACACTGTAAAGGGGAAAAAGCGAAAGAACAAAGACGCAGCCACAAAGCACGACCATGAACAAGAAGAAGAAGAAGAACAACAACAAATTCAACCAACACCGAAGAAACCAAATCGTCAGAACGAGGAACAAAGTGAGCCAATAGCAACAGCAACAACAGAGGAATCTGAACTTCCTGGTATTCCAATTGCTCCTTTGAATGAAAAGAATAGCGAGAAACAAGGTGTTATATTCATTCTCGAAAAAGCTTCTTTAGAAGTCGCTAAAGTTGGCAAGGTACTTTGGTTTTTGTTTTGTTAAATTGATTTACGATTTGTTTTTAAGTTATTCGTAAGTGTTTATATGATAAGTGTTTGTGTTATATAAGTTGCAAAGTAAGTTTTTTCACTCAAACAGGACTTAAGGGCTTGTAACATGTCTATAAGTTGTTTTCAGCTTATTTGAGTTTATGTACTGGTATAAACACGTGTGAGTTGTGACCTTGTTTGAGAGAATTTTTAAAAGCAGCTTATGATACGTACAGAAGTTGTTTTCAGCTTATTTCTAAAAGATCTTACATGATAGTTTGTGAAAACAACCTATAGACTCTAAACGATCTGACTTTGTTTTATCTTGTTTTACGTAACTAGCTTATTCATCTGCGCTTATGTTATATAAGCTGCAAAGTAAGTTGTTCATCTTAACATGGCTTATCTGGGAGAACTTATGAAAAGGCTTATGACATGTCTATAAGTTGTTTTTCAACTTATTTTTATGAGCCCTGGAGGATAGCTAAAATGAAAACAGTTTGATTTTTTTTTCTTTCTTTCTTTTGTATTAGAAACAGGTTATTCATATAGTCTCTAAAGATTTTTTTTTTTTAATAATGTCAACCGATTGTTATCGTTAAATCATCAAAACCATTGGATTTTAATCAAATTACTTCTAAAATCACATAAATAATTGATTGTGATTTGTTTCCAGGGTAAATTTTTAGCTGATAATGCATCAAAACTATGCACTTATTTAATTATTGTTTTAAACTATCAAAGATCTCAGGCAAGATTGATTTCACAGAAAGTAGAGGTGTATAATATTCTGTTACGTACACACACAGAAAGTAGAGGTGTAATATTCTGCTACGCACACACTTATATGATAATCGTTTATGAGAGGTGTAAAATTCTGTTATGTACACCCTTATTATATGATAATCGTCTATGCTATAACCGCTTGATTAAACGGTTATCCAAACAAGGCCTTCATTCACATAGTCTCTAAATGTTTTTATAATGTCAGTTAATTATTAGAAACATTTGACTCTACTCATAATTACTTCTAATTCTAAAGTTACATATATGATTTTTTAATGGGATAAAATTTTACAATGATAATGTATCAAAAGTAAACACTTGTACTAATATTGTTTTTTACTAGCAAAGATGTTGTGATGCTTCCGTATTGCGAGTAATAATGATTTTGAACTGTGTCTACAGACATATCAGCTGTTGAACTCTGATGAGCATGCTAATTTCCTCCGCAAACATAGCAAGAATCCTGGTGATTACAGACCTGACATTTGTCATCAGGTTGGTTCCAAACTGTTTTTATCAATTGTATTCTCACTACTTTCTGTTACCTAGTTTGATGTTTATGCTGCTAGATACCACTAGGAGAACAGACCCCGCTTGAATCGGGAAAACACTAAAGATAAATCAAACGTTGCTAACAAAACTACTTGGTTTTTCTCACGCTAAATATGATAAATACTGCAAGCTCCATTCGACTGCATTAGCCAACAAATACTGCGAATAAAATTATAGTTTAGGTTATTAGAAGAACAATCATGCTTAATAAGATTAACCATAACCTTGAAATCTGATTCTATTAGGATATTTGTAGAACCTCACATTTAGCTAAGCTAAGCCACAGTAATTAAGCGCTCTTCCTCAAAGCTTTAATGTATTGTCTTGTTCCACAGCCTACCATGGCCTGATTGGAAGGGTTCCTCTCTCCCTCAAAGAATGTACAATGTTGGTCTTGAATATTTGTAGTAATTATTGGGCTTAAATATGTTTTAAGTCGCCGAAATACATTTTTTTTTTTTTGCTTTTCGACCACCAAGTTTTTGACTCGGTTATGAAAACTTGTCAACTTTGATTCTGTAGCTAACTCTTATGTTGAGAGATTAATATTAGATGAGATATGACCCAAAAATGTGTTTATATGTGGAACACATCCCCCAACCTACAAGCTGACTTTGTTGGGTTGATTAAGGCCTAATCCAAATTTTAAGATAGTATCATAGGCTATCCAAGATTTGTTGAGCTTGCTATTAGGCCACTCGGATCACGCTCTAGATATACAGAATTGAGGGTGTGTTTAGGGTCCCACATTGGATGGGATATGGCCTGAAACTGTTATAAGTAGGAGACATCTCTCATATTACAAGACAGTTTTGTAGGATTGATTTAGCATTGACTGAAAATTTAAGACTCTGTCAGTCTAATTATACTCTAATTGTGTCTTGCGCCTATTTTTCTGATCTATTGTTCTCAACTCAGCACTGTGTATACTATTGCTGGCATCTCCCTCAAAGGGCTTTTTAGCAATCTTTAATTCTAATAGCTCTACTGACCAAGTCAATGTCAGGGTCCAAAGTGCATAGTACAAGTAATTTTTTTTTTACATATGAATGGCAGTGAAGAGGAGCACAATCAAATCTTAACAAACTGACCAACCATGAATAATGAAGTAAGATGTAAAACAAATGTGTCCCAATGCTACATTCACAATTAGCCAACTATCAGTGCCGGTTAGCTTGATTTAAAAGGACAAAGTATGTCCTGGCATGTCTCATGTTGATTGTGAAACATAAATCTATGACCAGATTTTTGCTTCACATGCATTTTTTTAGAATAGAAAATCTAGATGAATTAAACCACTCAGCTTCTCCACAATATAGTGAAAGCTTGAATCATCACTTCGGTAAAATTGAACCAAACCGTTAAGAGCATATATAATGTTAGAACAAGAATTGTGTTCTTCAAACATTTTGGTCGGTCCATCATTGCCATATGTGGATTCAAGAACAGCCATGTAGTTTTACTCTAATGCAAAAATATAATGTTTGTTCTTAATTTATTCTAAGTGGGTCCCACACGGTTTTCCTTCCCCAGCCGCAGCCCCACCCCACTTCCCCTCTCCTGTTTTCTTCTTTTTCTGACAGTTATTGCGGAAAACAGTGTTCTCCCGTGTTCTTCAGGGAGAACGGTTCTCCAACATGGCTTCCATGTCATTCCACTCCAATGGGATAGAACATAAAAACAAGTTCTCATGGCCTCGAGAACAAAGCATAGAACAGAGTTGGAGATGCTCTAATAGGTCTTCTCAAACCCAAAGATTGAGAACACAAAATTAGAGATACAAAACTGTGTGATGACATGACATCGACGAGTTTTAGAAAAAATGAACAAAAGAAAGATAAAATAAGGGAGAGAGTGAAGTGTGTGCGACAGTGCCAGTGAAGGAGAGGCCACCAACCCAAAGAGAAGTGTGAGATGCTTCCATATAGAGGCCACGACGATGGGGGAGGCCGTGTCCGAGGCTGACGACTAAAGGCATTGTCCCCGTCTGATGGAGACATGTCGTTGGATAGTAAAAAGGGCATTTCTTCTTCTCTTATTCTTTTTAACAAATTTTCGTATATTGCTACAACTTACTCCTTGATTTGTATTCAACTTTCATTTATTTCTATTTATCACCATTTTTCGTTGAGGTGCTAAAACTCTAGGTTGTTGGTTCAAGGCAGTGTGTATGACTTTAAAGGCTTGAAGACCATGGATATGTGAATATTGTTTGAGACACTTCTGATTTTTGGTCCAGTTTGGTTCAGTTTATGGATACAATTCAGTTAACCACATTTTTGCACACCCCTAGCTACAAGACCAAAACTGATACATTTCTAAAAATTAAGGACAAAAACGAGACAAAGTTTTGGGGGATCAAAAGCAAATATTATCATATTTTGAGGAATAAAAAACATTTAAGCATAACAACTTTAAATCTCATTTGATGTAAAATGTTGTTTTCAGGCACTTCTATCTATTTTAGATAGCCCGCTAAATAAAGCTGGGAGGTTGAAAATGGTATACATAAGGACTGAAAAAGGTGTTCTTATAGAGGTTAAGCCCTATGTTCGTATTCCAAGAACATTCAAACGGTTCGCTGGTGTCATGTGTAAGTTTTAGCTATTTGACTGTCTTAACACTTGGGACTACTATCTTGTGTGTGTCTGCATGATTTTCTTTTCCTGAGGAAAATGAATAATCTCTCATATGTTGCTTTTATACATTGTTGTTTTGCAGTGGAACTGCTTCAGAAATTGAGTATAACTGCTGCTGGAAAACGTGAGAAACTTCTCCGCACGATAAAAAACCCCGTAACCCAGTATTTGCCCGTCAACTCTCGAAAAGCAGGTTAGTTATTGTTGTTGCCTGATGGTTTAAAAAATGACTCCTTCAGTGTTGTCAATTGTTGATCGCAGAAAATAACAGTTCGGTCATATTCTATTACGCTACAATGCTATAGTATTAACAGCACTATAGCCACTATTTAACAACACCTTGCACTAATAGTTGGTGGGAAACCAATAGCGAATTGTTCAAATTCCGCTTTGCTATAGCGCTGCTATAGCTGCTATTTGACAACACTGATATCATGAAGGCCGCATGTTTATTTCATTTGATTAGATAGACAGTGGAATTGGATCTGATTTGTATTCAATTTGTTTCTTCCTTTTTGTACACTGTTGTGTTTCTCTTCTCTTAAAAAAATATAAGTAATTGTTTCCTTTGAATATTAGGTTTATCTTTTAGTTCAGAGAAGCTGGTAGACATGAACAACTATTTGTCAACAATTCCAAGCAATCAGGACCTTGTCTTTGTGGTACTCCCTAGCTCAATTTTCGAATTCCTTTACCTATTTATCTCAGTTGATGATTAACTTTTGAATGATCTAATTTAAGGTAGGAGCAATGGCACATGGGAAGGTTGAGACAGATTACACAGATGATTATATAGCTGGTATGTTATCCTTGTATTCACTTTTCCTTAAATTTGGTCCGAAAACTAAGAAGCCTGTTTGGATTGGCTAATTTGAGTTTATCTATTGTCATAAGCATTTGTGAGACTATTTGGAAGAACTTGTGAAAACAGCTTTTGACATCCCATAAGCTGTTTTCAGCTTATTTCCTCCCAAGATAGCTTATGAAAACAACCTATAACTTGTATGAAGACAATTTGACTTTATTTTGTCTTTTACTATAGAAAGAACTTAGACACAAACACTTATATGATAAGCACTTGATTAAGCTGATTATCCAAATATGATCTTAATGTATTTGTGCACAATGGAAAAAAAGTATTTTGAGTATCTTACTTCATTGTGTTTTCTGATTTCAGTTTCTGGTTACCCTTTAAGTGCTGCTTACTGTATTACAAGGATTACCAATGCTATTGAGGGAAAGTGGAACATATTGTGA
Protein sequence

>MS.gene003048.t1

MTRAYTVKGKKRKNKDAATKHDHEQEEEEEQQQIQPTPKKPNRQNEEQSEPIATATTEESELPGIPIAPLNEKNSEKQGVIFILEKASLEVAKVGKTYQLLNSDEHANFLRKHSKNPGDYRPDICHQALLSILDSPLNKAGRLKMVYIRTEKGVLIEVKPYVRIPRTFKRFAGVMLELLQKLSITAAGKREKLLRTIKNPVTQYLPVNSRKAGLSFSSEKLVDMNNYLSTIPSNQDLVFVVGAMAHGKVETDYTDDYIAVSGYPLSAAYCITRITNAIEGKWNIL