Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017434.t1 | XP_024640360.1 | 94.7 | 620 | 24 | 1 | 1 | 620 | 1 | 611 | 4.30E-308 | 1066.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017434.t1 | Q6NU91 | 29.6 | 480 | 256 | 9 | 96 | 565 | 98 | 505 | 1.2e-51 | 206.1 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017434.t1 | G7K1U1 | 94.0 | 620 | 24 | 1 | 1 | 620 | 1 | 607 | 1.4e-305 | 1057.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017434.t1 | MTR_5g078780 | 93.532 | 603 | 26 | 1 | 18 | 620 | 18 | 607 | 0.0 | 1127 |
MS.gene017434.t1 | MTR_5g078810 | 75.714 | 70 | 17 | 0 | 374 | 443 | 1 | 70 | 3.85e-26 | 102 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene017434.t1 | AT2G17250 | 58.003 | 581 | 232 | 5 | 12 | 592 | 8 | 576 | 0.0 | 681 |
Find 140 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACATTATTGTTACGTTTCT+TGG | 0.096967 | 5.1:-61423954 | None:intergenic |
AATGGTCAAGGCCTGATTTC+TGG | 0.177335 | 5.1:-61428554 | None:intergenic |
CTTCATCTTCTTCGCAATTC+TGG | 0.241906 | 5.1:-61424190 | None:intergenic |
TTGGAGGGAAAAGATGTTTC+AGG | 0.244460 | 5.1:+61422819 | MS.gene017434:CDS |
TTGCTTTCAGTTCCACCTTC+TGG | 0.244476 | 5.1:+61426969 | MS.gene017434:CDS |
AGAAAAGCTCACAAGAAATT+TGG | 0.246404 | 5.1:+61422800 | MS.gene017434:CDS |
CTTGAGCAGGAAGCTCTCTT+TGG | 0.255727 | 5.1:+61429034 | MS.gene017434:intron |
TTTAGGTTTGCTTTGTCTCT+TGG | 0.268396 | 5.1:+61429220 | MS.gene017434:intron |
CAGATTCCTCAATGTTAAAA+TGG | 0.289979 | 5.1:-61428572 | None:intergenic |
GAACGGGGCTAAAGATTTAT+TGG | 0.290532 | 5.1:+61429853 | MS.gene017434:CDS |
AAGCTTGGATTGCGTATCTT+AGG | 0.300738 | 5.1:+61424226 | MS.gene017434:CDS |
CCAATCCATGCTGGGTCATT+AGG | 0.303403 | 5.1:-61425787 | None:intergenic |
TTAGGTTTGCTTTGTCTCTT+GGG | 0.321498 | 5.1:+61429221 | MS.gene017434:intron |
ATTAGTTCCATCTATCTTCA+TGG | 0.328121 | 5.1:+61425844 | MS.gene017434:CDS |
TGAGCTTAATTGACTTTCAT+TGG | 0.332356 | 5.1:-61423008 | None:intergenic |
GGTTCTTATGCAACAATACT+TGG | 0.336089 | 5.1:+61429301 | MS.gene017434:CDS |
TGAATGCGATGAAACTATTA+AGG | 0.339514 | 5.1:+61421933 | MS.gene017434:CDS |
GAAGGGAGTTGAGGGAGGAG+AGG | 0.348058 | 5.1:-61421787 | None:intergenic |
GTGGTGGTTGCGGTGGCGGA+AGG | 0.353194 | 5.1:-61421805 | None:intergenic |
ATGTGGTGAGGTGGAGAAGA+AGG | 0.362280 | 5.1:-61421727 | None:intergenic |
GCTGGTGGTGGTTGCGGTGG+CGG | 0.371522 | 5.1:-61421809 | None:intergenic |
TCAGTGATGCTGTGTTGTTT+TGG | 0.385668 | 5.1:-61421625 | None:intergenic |
ACCCCTTCTTCCAGCTTACC+TGG | 0.387473 | 5.1:+61426914 | MS.gene017434:CDS |
TGCATTGGTTATTACAGCTC+TGG | 0.389369 | 5.1:+61426992 | MS.gene017434:CDS |
GCTGGGTCATTAGGATATAA+AGG | 0.391038 | 5.1:-61425778 | None:intergenic |
AAAACAAGCGAAGTTAATAT+TGG | 0.391828 | 5.1:+61429265 | MS.gene017434:CDS |
TTGAGCAGGAAGCTCTCTTT+GGG | 0.394155 | 5.1:+61429035 | MS.gene017434:intron |
CTGGAAGAAGGGGTGACTTT+AGG | 0.399170 | 5.1:-61426905 | None:intergenic |
TGTGGTGAGGTGGAGAAGAA+GGG | 0.400686 | 5.1:-61421726 | None:intergenic |
GAGTTTGTTAAGGTTGCTAA+TGG | 0.401292 | 5.1:+61421979 | MS.gene017434:CDS |
CGAAGAGACTGCTTCTAACT+TGG | 0.405411 | 5.1:+61428503 | MS.gene017434:CDS |
GAGATGAATGTGAGGAGGAG+AGG | 0.410717 | 5.1:-61421703 | None:intergenic |
AGATGAATGTGAGGAGGAGA+GGG | 0.412733 | 5.1:-61421702 | None:intergenic |
AAGGGAGTTGAGGGAGGAGA+GGG | 0.413318 | 5.1:-61421786 | None:intergenic |
CGATCAACTGTTTGGTGCAC+CGG | 0.416098 | 5.1:+61427042 | MS.gene017434:CDS |
GCAAAGCTCTGCCAGAAATC+AGG | 0.417403 | 5.1:+61428543 | MS.gene017434:CDS |
TTAGAAATGTGGAGTGTATC+AGG | 0.418848 | 5.1:+61423453 | MS.gene017434:CDS |
CCACGTGAGGTAAATGAATT+CGG | 0.420969 | 5.1:-61421854 | None:intergenic |
GGAGGAGCTGGTGGTGGTTG+CGG | 0.422441 | 5.1:-61421815 | None:intergenic |
TCATCGACAATAATGAGAAC+GGG | 0.429049 | 5.1:+61429837 | MS.gene017434:CDS |
TCTTAGGTTGCCACTTCCAT+TGG | 0.431065 | 5.1:+61424242 | MS.gene017434:CDS |
TACTTTGATGGAGTTTGTTA+AGG | 0.432512 | 5.1:+61421969 | MS.gene017434:CDS |
AGTTGTGCTTGATACTTTGA+TGG | 0.436883 | 5.1:+61421957 | MS.gene017434:CDS |
AGTTCCACCTTCTGGTGCAT+TGG | 0.437968 | 5.1:+61426977 | MS.gene017434:CDS |
ACATCCTTCGATCAACTGTT+TGG | 0.439932 | 5.1:+61427034 | MS.gene017434:CDS |
TGTCTAATCCCATCATGTTA+TGG | 0.440426 | 5.1:+61425615 | MS.gene017434:CDS |
AGGGAGGAGAGGGAGGAAGA+AGG | 0.440748 | 5.1:-61421776 | None:intergenic |
GGAGTTGAGGGAGGAGAGGG+AGG | 0.440858 | 5.1:-61421783 | None:intergenic |
AGTTAAAATTTACTAAAGCT+TGG | 0.442017 | 5.1:+61424211 | MS.gene017434:CDS |
CTCATAGCGCCTGACTTCAT+AGG | 0.448545 | 5.1:-61428597 | None:intergenic |
AATGAGGCAGCCAGGTAAGC+TGG | 0.457951 | 5.1:-61426924 | None:intergenic |
TGGTGGTTGCGGTGGCGGAA+GGG | 0.462845 | 5.1:-61421804 | None:intergenic |
CGGTGGCGGAAGGGAGTTGA+GGG | 0.464726 | 5.1:-61421795 | None:intergenic |
ACCACCACCAGCTCCTCCTC+TGG | 0.470797 | 5.1:+61421820 | MS.gene017434:CDS |
TTTCTTCATTGCAGGTTCCA+TGG | 0.470904 | 5.1:-61421578 | None:intergenic |
TTGGGTATTCCAATCCATGC+TGG | 0.473646 | 5.1:-61425796 | None:intergenic |
GTTGTTGATGTGTGAGGCGG+AGG | 0.482954 | 5.1:-61421677 | None:intergenic |
CCTAATGACCCAGCATGGAT+TGG | 0.485238 | 5.1:+61425787 | MS.gene017434:CDS |
CAGCCAGGTAAGCTGGAAGA+AGG | 0.488496 | 5.1:-61426917 | None:intergenic |
AGCCAGGTAAGCTGGAAGAA+GGG | 0.489279 | 5.1:-61426916 | None:intergenic |
ATTTCAAGTATATTGATGTT+CGG | 0.489524 | 5.1:+61422218 | MS.gene017434:CDS |
GGAGAGAAGTTCTTGACCTA+GGG | 0.491411 | 5.1:-61421656 | None:intergenic |
ACTCAATTTCTTTGCAAATG+AGG | 0.492729 | 5.1:-61426940 | None:intergenic |
CAAAACACTTACCGTGAGAC+AGG | 0.494028 | 5.1:-61429090 | None:intergenic |
GAAGAGAGAGAATCGATTCG+AGG | 0.495834 | 5.1:-61421750 | None:intergenic |
GTGGTGAGGTGGAGAAGAAG+GGG | 0.502021 | 5.1:-61421725 | None:intergenic |
TGAATGTGAGGAGGAGAGGG+AGG | 0.502763 | 5.1:-61421699 | None:intergenic |
GAATCTGATCCTATGAAGTC+AGG | 0.505902 | 5.1:+61428588 | MS.gene017434:CDS |
TTGACAAGGTCGTATGATGT+AGG | 0.506754 | 5.1:+61425725 | MS.gene017434:CDS |
TTCTCTGAAAAGAGAGAGGA+TGG | 0.507254 | 5.1:-61429767 | None:intergenic |
GTAAATGAATTCGGATTGAT+CGG | 0.509695 | 5.1:-61421845 | None:intergenic |
GATTACACGGAGGGTGAAGC+AGG | 0.509973 | 5.1:+61429718 | MS.gene017434:intron |
TCTTTGCAAATGAGGCAGCC+AGG | 0.517329 | 5.1:-61426932 | None:intergenic |
ATCGGAACCAGAGGAGGAGC+TGG | 0.519725 | 5.1:-61421827 | None:intergenic |
GGAGCTGGTGGTGGTTGCGG+TGG | 0.521533 | 5.1:-61421812 | None:intergenic |
TGGGTATTCCAATCCATGCT+GGG | 0.522547 | 5.1:-61425795 | None:intergenic |
AATAATAACTTACAATACTA+CGG | 0.526362 | 5.1:-61422038 | None:intergenic |
AGGAGAGAAGTTCTTGACCT+AGG | 0.526973 | 5.1:-61421657 | None:intergenic |
TTTGTTAAGGTTGCTAATGG+TGG | 0.527835 | 5.1:+61421982 | MS.gene017434:CDS |
AGAGAATCGATTCGAGGATG+TGG | 0.533005 | 5.1:-61421744 | None:intergenic |
ACCAGAGGAGGAGCTGGTGG+TGG | 0.535853 | 5.1:-61421821 | None:intergenic |
AAGAAGGGGAGATGAATGTG+AGG | 0.536341 | 5.1:-61421711 | None:intergenic |
CCGAATTCATTTACCTCACG+TGG | 0.537243 | 5.1:+61421854 | MS.gene017434:CDS |
GCGGTGGCGGAAGGGAGTTG+AGG | 0.538128 | 5.1:-61421796 | None:intergenic |
GATAAAACTGCAAGCGCAGA+TGG | 0.542599 | 5.1:+61422983 | MS.gene017434:CDS |
ATCACTTATCGATTGTCTTG+TGG | 0.543229 | 5.1:+61421906 | MS.gene017434:CDS |
ATGAAAGTCAATTAAGCTCA+AGG | 0.545065 | 5.1:+61423011 | MS.gene017434:CDS |
GAGGAATCACTGCTTGGTGA+AGG | 0.547446 | 5.1:-61425589 | None:intergenic |
GGCTAAAGATTTATTGGACC+AGG | 0.548798 | 5.1:+61429859 | MS.gene017434:CDS |
ACCTCTTTGAACACATCCAA+TGG | 0.549353 | 5.1:-61424258 | None:intergenic |
GATCAACTGTTTGGTGCACC+GGG | 0.550891 | 5.1:+61427043 | MS.gene017434:CDS |
AAAGCTCACAAGAAATTTGG+AGG | 0.555352 | 5.1:+61422803 | MS.gene017434:CDS |
TTGAACACATCCAATGGAAG+TGG | 0.555934 | 5.1:-61424252 | None:intergenic |
GCCAGGTAAGCTGGAAGAAG+GGG | 0.560855 | 5.1:-61426915 | None:intergenic |
AGGTGTTTACCATAACATGA+TGG | 0.563701 | 5.1:-61425624 | None:intergenic |
TCCATTGGATGTGTTCAAAG+AGG | 0.564996 | 5.1:+61424257 | MS.gene017434:CDS |
GGTGTTTACCATAACATGAT+GGG | 0.565453 | 5.1:-61425623 | None:intergenic |
ATATGGTGTAGTACATATTG+TGG | 0.566500 | 5.1:-61423389 | None:intergenic |
AAGGGGAGATGAATGTGAGG+AGG | 0.575380 | 5.1:-61421708 | None:intergenic |
AGGGAGGTTGTTGATGTGTG+AGG | 0.576196 | 5.1:-61421683 | None:intergenic |
TTGCACCATTGCAGATTACA+CGG | 0.577570 | 5.1:+61429705 | MS.gene017434:intron |
TGGCGGAAGGGAGTTGAGGG+AGG | 0.579360 | 5.1:-61421792 | None:intergenic |
CCTCAATGTTAAAATGGTCA+AGG | 0.580409 | 5.1:-61428566 | None:intergenic |
TAAAATGCTTTCTGTAGATG+TGG | 0.586404 | 5.1:+61423907 | MS.gene017434:CDS |
AACTTGGATAATGCTCAGAA+TGG | 0.586561 | 5.1:+61428519 | MS.gene017434:CDS |
AGACAGGAGGACAGTAGTGG+TGG | 0.591867 | 5.1:-61429074 | None:intergenic |
ACAGATGAGGAATCACTGCT+TGG | 0.595439 | 5.1:-61425595 | None:intergenic |
GATTCGAGGATGTGGTGAGG+TGG | 0.595441 | 5.1:-61421736 | None:intergenic |
TCATGGCAAAACATCGTGCA+AGG | 0.595702 | 5.1:+61425861 | MS.gene017434:CDS |
ACCATTGCAGATTACACGGA+GGG | 0.596485 | 5.1:+61429709 | MS.gene017434:intron |
TTATGCAACAATACTTGGAG+CGG | 0.603488 | 5.1:+61429306 | MS.gene017434:CDS |
TTCGGATTGATCGGAACCAG+AGG | 0.606360 | 5.1:-61421836 | None:intergenic |
TATATCCTAATGACCCAGCA+TGG | 0.606697 | 5.1:+61425782 | MS.gene017434:CDS |
GAGGTTGTTGATGTGTGAGG+CGG | 0.608742 | 5.1:-61421680 | None:intergenic |
TGCAACAATACTTGGAGCGG+AGG | 0.610817 | 5.1:+61429309 | MS.gene017434:CDS |
ACTTATCGATTGTCTTGTGG+CGG | 0.611390 | 5.1:+61421909 | MS.gene017434:CDS |
ATCATCGACAATAATGAGAA+CGG | 0.612651 | 5.1:+61429836 | MS.gene017434:CDS |
ATCATTCTCTGAAAAGAGAG+AGG | 0.615510 | 5.1:-61429771 | None:intergenic |
ATAACCAATGCACCAGAAGG+TGG | 0.616650 | 5.1:-61426981 | None:intergenic |
TGCACCAAACAGTTGATCGA+AGG | 0.618010 | 5.1:-61427038 | None:intergenic |
CATATTGTGGATGATGCACT+CGG | 0.624795 | 5.1:-61423376 | None:intergenic |
ATACATCTGATTTAGAAATG+TGG | 0.629117 | 5.1:+61423442 | MS.gene017434:CDS |
ACTACTGTCCTCCTGTCTCA+CGG | 0.630327 | 5.1:+61429079 | MS.gene017434:CDS |
ATCACTGAAATCAAAACCCT+AGG | 0.631706 | 5.1:+61421640 | MS.gene017434:CDS |
GTAATAACCAATGCACCAGA+AGG | 0.635450 | 5.1:-61426984 | None:intergenic |
AAGCTCACAAGAAATTTGGA+GGG | 0.638699 | 5.1:+61422804 | MS.gene017434:CDS |
GGAACCAGAGGAGGAGCTGG+TGG | 0.642590 | 5.1:-61421824 | None:intergenic |
ATCGATTCGAGGATGTGGTG+AGG | 0.646651 | 5.1:-61421739 | None:intergenic |
GTGAGACAGGAGGACAGTAG+TGG | 0.650028 | 5.1:-61429077 | None:intergenic |
CATTTGCAAAGAAATTGAGT+AGG | 0.655411 | 5.1:+61426943 | MS.gene017434:CDS |
GAAACTCGTCGAACTTCGAA+CGG | 0.658319 | 5.1:-61421879 | None:intergenic |
ACTTCGAACGGAGCCACGTG+AGG | 0.663920 | 5.1:-61421867 | None:intergenic |
TGTGCAGTGATTTCTTGACA+AGG | 0.666059 | 5.1:+61425711 | MS.gene017434:intron |
GGATTGATCGGAACCAGAGG+AGG | 0.668743 | 5.1:-61421833 | None:intergenic |
AGGTGGTGTAGTCAGCGTGA+TGG | 0.671351 | 5.1:+61425745 | MS.gene017434:CDS |
AACACTTACCGTGAGACAGG+AGG | 0.675774 | 5.1:-61429087 | None:intergenic |
CATCGACAATAATGAGAACG+GGG | 0.677716 | 5.1:+61429838 | MS.gene017434:CDS |
ACAAGGTCGTATGATGTAGG+TGG | 0.691770 | 5.1:+61425728 | MS.gene017434:CDS |
ATGATGGGATTAGACAGATG+AGG | 0.697642 | 5.1:-61425608 | None:intergenic |
CACCATTGCAGATTACACGG+AGG | 0.732506 | 5.1:+61429708 | MS.gene017434:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.1 | gene | 61421580 | 61429922 | 61421580 | ID=MS.gene017434 |
chr5.1 | mRNA | 61421580 | 61429922 | 61421580 | ID=MS.gene017434.t1;Parent=MS.gene017434 |
chr5.1 | exon | 61421580 | 61422047 | 61421580 | ID=MS.gene017434.t1.exon1;Parent=MS.gene017434.t1 |
chr5.1 | CDS | 61421580 | 61422047 | 61421580 | ID=cds.MS.gene017434.t1;Parent=MS.gene017434.t1 |
chr5.1 | exon | 61422166 | 61422239 | 61422166 | ID=MS.gene017434.t1.exon2;Parent=MS.gene017434.t1 |
chr5.1 | CDS | 61422166 | 61422239 | 61422166 | ID=cds.MS.gene017434.t1;Parent=MS.gene017434.t1 |
chr5.1 | exon | 61422779 | 61422840 | 61422779 | ID=MS.gene017434.t1.exon3;Parent=MS.gene017434.t1 |
chr5.1 | CDS | 61422779 | 61422840 | 61422779 | ID=cds.MS.gene017434.t1;Parent=MS.gene017434.t1 |
chr5.1 | exon | 61422981 | 61423032 | 61422981 | ID=MS.gene017434.t1.exon4;Parent=MS.gene017434.t1 |
chr5.1 | CDS | 61422981 | 61423032 | 61422981 | ID=cds.MS.gene017434.t1;Parent=MS.gene017434.t1 |
chr5.1 | exon | 61423374 | 61423474 | 61423374 | ID=MS.gene017434.t1.exon5;Parent=MS.gene017434.t1 |
chr5.1 | CDS | 61423374 | 61423474 | 61423374 | ID=cds.MS.gene017434.t1;Parent=MS.gene017434.t1 |
chr5.1 | exon | 61423897 | 61423973 | 61423897 | ID=MS.gene017434.t1.exon6;Parent=MS.gene017434.t1 |
chr5.1 | CDS | 61423897 | 61423973 | 61423897 | ID=cds.MS.gene017434.t1;Parent=MS.gene017434.t1 |
chr5.1 | exon | 61424177 | 61424278 | 61424177 | ID=MS.gene017434.t1.exon7;Parent=MS.gene017434.t1 |
chr5.1 | CDS | 61424177 | 61424278 | 61424177 | ID=cds.MS.gene017434.t1;Parent=MS.gene017434.t1 |
chr5.1 | exon | 61425578 | 61425636 | 61425578 | ID=MS.gene017434.t1.exon8;Parent=MS.gene017434.t1 |
chr5.1 | CDS | 61425578 | 61425636 | 61425578 | ID=cds.MS.gene017434.t1;Parent=MS.gene017434.t1 |
chr5.1 | exon | 61425718 | 61425892 | 61425718 | ID=MS.gene017434.t1.exon9;Parent=MS.gene017434.t1 |
chr5.1 | CDS | 61425718 | 61425892 | 61425718 | ID=cds.MS.gene017434.t1;Parent=MS.gene017434.t1 |
chr5.1 | exon | 61426891 | 61427064 | 61426891 | ID=MS.gene017434.t1.exon10;Parent=MS.gene017434.t1 |
chr5.1 | CDS | 61426891 | 61427064 | 61426891 | ID=cds.MS.gene017434.t1;Parent=MS.gene017434.t1 |
chr5.1 | exon | 61428468 | 61428618 | 61428468 | ID=MS.gene017434.t1.exon11;Parent=MS.gene017434.t1 |
chr5.1 | CDS | 61428468 | 61428618 | 61428468 | ID=cds.MS.gene017434.t1;Parent=MS.gene017434.t1 |
chr5.1 | exon | 61429043 | 61429100 | 61429043 | ID=MS.gene017434.t1.exon12;Parent=MS.gene017434.t1 |
chr5.1 | CDS | 61429043 | 61429100 | 61429043 | ID=cds.MS.gene017434.t1;Parent=MS.gene017434.t1 |
chr5.1 | exon | 61429225 | 61429330 | 61429225 | ID=MS.gene017434.t1.exon13;Parent=MS.gene017434.t1 |
chr5.1 | CDS | 61429225 | 61429330 | 61429225 | ID=cds.MS.gene017434.t1;Parent=MS.gene017434.t1 |
chr5.1 | exon | 61429719 | 61429922 | 61429719 | ID=MS.gene017434.t1.exon14;Parent=MS.gene017434.t1 |
chr5.1 | CDS | 61429719 | 61429922 | 61429719 | ID=cds.MS.gene017434.t1;Parent=MS.gene017434.t1 |
Gene Sequence |
Protein sequence |