Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26077.t1 | XP_024640360.1 | 95.6 | 611 | 27 | 0 | 1 | 611 | 1 | 611 | 3.30E-308 | 1067 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26077.t1 | Q6NU91 | 29.7 | 472 | 257 | 8 | 96 | 556 | 98 | 505 | 1.9e-51 | 205.3 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26077.t1 | G7K1U1 | 94.9 | 611 | 27 | 1 | 1 | 611 | 1 | 607 | 1.6e-304 | 1054.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26077.t1 | MTR_5g078780 | 94.444 | 594 | 29 | 1 | 18 | 611 | 18 | 607 | 0.0 | 1125 |
MS.gene26077.t1 | MTR_5g078810 | 75.714 | 70 | 17 | 0 | 365 | 434 | 1 | 70 | 4.36e-26 | 102 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene26077.t1 | AT2G17250 | 57.986 | 576 | 231 | 5 | 12 | 583 | 8 | 576 | 0.0 | 675 |
Find 140 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACATTATTGTTACGTTTCT+TGG | 0.096967 | 5.4:+56182723 | None:intergenic |
AATGGTCAAGGCCTGATTTC+TGG | 0.177335 | 5.4:+56178489 | None:intergenic |
CTTCATCTTCTTCGCAATTC+TGG | 0.241906 | 5.4:+56182487 | None:intergenic |
TTGGAGGGAAAAGATGTTTC+AGG | 0.244460 | 5.4:-56183858 | MS.gene26077:intron |
TTGCTTTCAGTTCCACCTTC+TGG | 0.244476 | 5.4:-56180074 | MS.gene26077:CDS |
AGAAAAGCTCACAAGAAATT+TGG | 0.246404 | 5.4:-56183877 | MS.gene26077:CDS |
CTTGAGCAGGAAGCTCTCTT+TGG | 0.255727 | 5.4:-56178009 | MS.gene26077:intron |
TTTAGGTTTGCTTTGTCTCT+TGG | 0.268396 | 5.4:-56177823 | MS.gene26077:intron |
CAGATTCCTCAATGTTAAAA+TGG | 0.289979 | 5.4:+56178471 | None:intergenic |
GAACGGGGCTAAAGATTTAT+TGG | 0.290532 | 5.4:-56177190 | MS.gene26077:CDS |
AAGCTTGGATTGCGTATCTT+AGG | 0.300738 | 5.4:-56182451 | MS.gene26077:CDS |
CCAATCCATGCTGGGTCATT+AGG | 0.303403 | 5.4:+56181256 | None:intergenic |
TTAGGTTTGCTTTGTCTCTT+GGG | 0.321498 | 5.4:-56177822 | MS.gene26077:intron |
GCTTCTTATGCAACAATACT+TGG | 0.323139 | 5.4:-56177742 | MS.gene26077:CDS |
ATTAGTTCCATCTATCTTCA+TGG | 0.328121 | 5.4:-56181199 | MS.gene26077:CDS |
TGAGCTTAATTGACTTTCAT+TGG | 0.332356 | 5.4:+56183669 | None:intergenic |
TGAATGCGATGAAACTATTA+AGG | 0.339514 | 5.4:-56184692 | MS.gene26077:CDS |
GAAGGGAGTTGAGGGAGGAG+AGG | 0.348058 | 5.4:+56184838 | None:intergenic |
GTGGTGGTTGCGGTGGCGGA+AGG | 0.353194 | 5.4:+56184820 | None:intergenic |
ATGTGGTGAGGTGGAGAAGA+AGG | 0.362280 | 5.4:+56184898 | None:intergenic |
GCTGGTGGTGGTTGCGGTGG+CGG | 0.371522 | 5.4:+56184816 | None:intergenic |
TCAGTGATGCTGTGTTGTTT+TGG | 0.385668 | 5.4:+56185000 | None:intergenic |
ACCCCTTCTTCCAGCTTACC+TGG | 0.387473 | 5.4:-56180129 | MS.gene26077:CDS |
TGCATTGGTTATTACAGCTC+TGG | 0.389369 | 5.4:-56180051 | MS.gene26077:CDS |
GCTGGGTCATTAGGATATAA+AGG | 0.391038 | 5.4:+56181265 | None:intergenic |
AAAACAAGCGAAGTTAATAT+TGG | 0.391828 | 5.4:-56177778 | MS.gene26077:CDS |
TTGAGCAGGAAGCTCTCTTT+GGG | 0.394155 | 5.4:-56178008 | MS.gene26077:intron |
CTGGAAGAAGGGGTGACTTT+AGG | 0.399170 | 5.4:+56180138 | None:intergenic |
TGTGGTGAGGTGGAGAAGAA+GGG | 0.400686 | 5.4:+56184899 | None:intergenic |
GAGTTTGTTAAGGTTGCTAA+TGG | 0.401292 | 5.4:-56184646 | MS.gene26077:CDS |
CGAAGAGACTGCTTCTAACT+TGG | 0.405411 | 5.4:-56178540 | MS.gene26077:CDS |
GAGATGAATGTGAGGAGGAG+AGG | 0.410717 | 5.4:+56184922 | None:intergenic |
AGATGAATGTGAGGAGGAGA+GGG | 0.412733 | 5.4:+56184923 | None:intergenic |
AAGGGAGTTGAGGGAGGAGA+GGG | 0.413318 | 5.4:+56184839 | None:intergenic |
CGATCAACTGTTTGGTGCAC+CGG | 0.416098 | 5.4:-56180001 | MS.gene26077:CDS |
GCAAAGCTCTGCCAGAAATC+AGG | 0.417403 | 5.4:-56178500 | MS.gene26077:CDS |
TTAGAAATGTGGAGTGTATC+AGG | 0.418848 | 5.4:-56183224 | MS.gene26077:intron |
CCACGTGAGGTAAATGAATT+CGG | 0.420969 | 5.4:+56184771 | None:intergenic |
GGAGGAGCTGGTGGTGGTTG+CGG | 0.422441 | 5.4:+56184810 | None:intergenic |
TCATCGACAATAATGAGAAC+GGG | 0.429049 | 5.4:-56177206 | MS.gene26077:CDS |
TCTTAGGTTGCCACTTCCAT+TGG | 0.431065 | 5.4:-56182435 | MS.gene26077:CDS |
TACTTTGATGGAGTTTGTTA+AGG | 0.432512 | 5.4:-56184656 | MS.gene26077:CDS |
AGTTGTGCTTGATACTTTGA+TGG | 0.436883 | 5.4:-56184668 | MS.gene26077:CDS |
AGTTCCACCTTCTGGTGCAT+TGG | 0.437968 | 5.4:-56180066 | MS.gene26077:CDS |
ACATCCTTCGATCAACTGTT+TGG | 0.439932 | 5.4:-56180009 | MS.gene26077:CDS |
TGTCTAATCCCATCATGTTA+TGG | 0.440426 | 5.4:-56181428 | MS.gene26077:intron |
AGGGAGGAGAGGGAGGAAGA+AGG | 0.440748 | 5.4:+56184849 | None:intergenic |
GGAGTTGAGGGAGGAGAGGG+AGG | 0.440858 | 5.4:+56184842 | None:intergenic |
AGTTAAAATTTACTAAAGCT+TGG | 0.442017 | 5.4:-56182466 | MS.gene26077:CDS |
CTCATAGCGCCTGACTTCAT+AGG | 0.448545 | 5.4:+56178446 | None:intergenic |
AATGAGGCAGCCAGGTAAGC+TGG | 0.457951 | 5.4:+56180119 | None:intergenic |
TGGTGGTTGCGGTGGCGGAA+GGG | 0.462845 | 5.4:+56184821 | None:intergenic |
CGGTGGCGGAAGGGAGTTGA+GGG | 0.464726 | 5.4:+56184830 | None:intergenic |
ACCACCACCAGCTCCTCCTC+TGG | 0.470797 | 5.4:-56184805 | MS.gene26077:CDS |
TTTCTTCATTGCAGGTTCCA+TGG | 0.470904 | 5.4:+56185047 | None:intergenic |
TTGGGTATTCCAATCCATGC+TGG | 0.473646 | 5.4:+56181247 | None:intergenic |
GTTGTTGATGTGTGAGGCGG+AGG | 0.482954 | 5.4:+56184948 | None:intergenic |
CCTAATGACCCAGCATGGAT+TGG | 0.485238 | 5.4:-56181256 | MS.gene26077:CDS |
CAGCCAGGTAAGCTGGAAGA+AGG | 0.488496 | 5.4:+56180126 | None:intergenic |
AGCCAGGTAAGCTGGAAGAA+GGG | 0.489279 | 5.4:+56180127 | None:intergenic |
ATTTCAAGTATATTGATGTT+CGG | 0.489524 | 5.4:-56184408 | MS.gene26077:intron |
GGAGAGAAGTTCTTGACCTA+GGG | 0.491411 | 5.4:+56184969 | None:intergenic |
ACTCAATTTCTTTGCAAATG+AGG | 0.492729 | 5.4:+56180103 | None:intergenic |
CAAAACACTTACCGTGAGAC+AGG | 0.494028 | 5.4:+56177953 | None:intergenic |
GAAGAGAGAGAATCGATTCG+AGG | 0.495834 | 5.4:+56184875 | None:intergenic |
CACGTGGCTCCGTTCGAAGT+TGG | 0.500923 | 5.4:-56184755 | MS.gene26077:CDS |
GTGGTGAGGTGGAGAAGAAG+GGG | 0.502021 | 5.4:+56184900 | None:intergenic |
TGAATGTGAGGAGGAGAGGG+AGG | 0.502763 | 5.4:+56184926 | None:intergenic |
GAATCTGATCCTATGAAGTC+AGG | 0.505902 | 5.4:-56178455 | MS.gene26077:CDS |
TTGACAAGGTCGTATGATGT+AGG | 0.506754 | 5.4:-56181318 | MS.gene26077:CDS |
TTCTCTGAAAAGAGAGAGGA+TGG | 0.507254 | 5.4:+56177276 | None:intergenic |
GTAAATGAATTCGGATTGAT+CGG | 0.509695 | 5.4:+56184780 | None:intergenic |
GATTACACGGAGGGTGAAGC+AGG | 0.509973 | 5.4:-56177325 | MS.gene26077:CDS |
TCTTTGCAAATGAGGCAGCC+AGG | 0.517329 | 5.4:+56180111 | None:intergenic |
ATCGGAACCAGAGGAGGAGC+TGG | 0.519725 | 5.4:+56184798 | None:intergenic |
GGAGCTGGTGGTGGTTGCGG+TGG | 0.521533 | 5.4:+56184813 | None:intergenic |
TGGGTATTCCAATCCATGCT+GGG | 0.522547 | 5.4:+56181248 | None:intergenic |
AATAATAACTTACAATACTA+CGG | 0.526362 | 5.4:+56184587 | None:intergenic |
AGGAGAGAAGTTCTTGACCT+AGG | 0.526973 | 5.4:+56184968 | None:intergenic |
TTTGTTAAGGTTGCTAATGG+TGG | 0.527835 | 5.4:-56184643 | MS.gene26077:CDS |
AGAGAATCGATTCGAGGATG+TGG | 0.533005 | 5.4:+56184881 | None:intergenic |
ACCAGAGGAGGAGCTGGTGG+TGG | 0.535853 | 5.4:+56184804 | None:intergenic |
AAGAAGGGGAGATGAATGTG+AGG | 0.536341 | 5.4:+56184914 | None:intergenic |
CCGAATTCATTTACCTCACG+TGG | 0.537243 | 5.4:-56184771 | MS.gene26077:CDS |
GCGGTGGCGGAAGGGAGTTG+AGG | 0.538128 | 5.4:+56184829 | None:intergenic |
GATAAAACTGCAAGCGCAGA+TGG | 0.542599 | 5.4:-56183694 | MS.gene26077:CDS |
ATCACTTATCGATTGTCTTG+TGG | 0.543229 | 5.4:-56184719 | MS.gene26077:CDS |
ATGAAAGTCAATTAAGCTCA+AGG | 0.545065 | 5.4:-56183666 | MS.gene26077:intron |
GAGGAATCACTGCTTGGTGA+AGG | 0.547446 | 5.4:+56181454 | None:intergenic |
GGCTAAAGATTTATTGGACC+AGG | 0.548798 | 5.4:-56177184 | MS.gene26077:CDS |
ACCTCTTTGAACACATCCAA+TGG | 0.549353 | 5.4:+56182419 | None:intergenic |
GATCAACTGTTTGGTGCACC+GGG | 0.550891 | 5.4:-56180000 | MS.gene26077:intron |
AAAGCTCACAAGAAATTTGG+AGG | 0.555352 | 5.4:-56183874 | MS.gene26077:CDS |
TTGAACACATCCAATGGAAG+TGG | 0.555934 | 5.4:+56182425 | None:intergenic |
GCCAGGTAAGCTGGAAGAAG+GGG | 0.560855 | 5.4:+56180128 | None:intergenic |
AGGTGTTTACCATAACATGA+TGG | 0.563701 | 5.4:+56181419 | None:intergenic |
TCCATTGGATGTGTTCAAAG+AGG | 0.564996 | 5.4:-56182420 | MS.gene26077:intron |
GGTGTTTACCATAACATGAT+GGG | 0.565453 | 5.4:+56181420 | None:intergenic |
ATATGGTGTAGTACATATTG+TGG | 0.566500 | 5.4:+56183288 | None:intergenic |
AAGGGGAGATGAATGTGAGG+AGG | 0.575380 | 5.4:+56184917 | None:intergenic |
AGGGAGGTTGTTGATGTGTG+AGG | 0.576196 | 5.4:+56184942 | None:intergenic |
TTGCACCATTGCAGATTACA+CGG | 0.577570 | 5.4:-56177338 | MS.gene26077:intron |
TGGCGGAAGGGAGTTGAGGG+AGG | 0.579360 | 5.4:+56184833 | None:intergenic |
CCTCAATGTTAAAATGGTCA+AGG | 0.580409 | 5.4:+56178477 | None:intergenic |
AACTTGGATAATGCTCAGAA+TGG | 0.586561 | 5.4:-56178524 | MS.gene26077:CDS |
AGACAGGAGGACAGTAGTGG+TGG | 0.591867 | 5.4:+56177969 | None:intergenic |
ACAGATGAGGAATCACTGCT+TGG | 0.595439 | 5.4:+56181448 | None:intergenic |
GATTCGAGGATGTGGTGAGG+TGG | 0.595441 | 5.4:+56184889 | None:intergenic |
TCATGGCAAAACATCGTGCA+AGG | 0.595702 | 5.4:-56181182 | MS.gene26077:CDS |
ACCATTGCAGATTACACGGA+GGG | 0.596485 | 5.4:-56177334 | MS.gene26077:intron |
TTATGCAACAATACTTGGAG+CGG | 0.600906 | 5.4:-56177737 | MS.gene26077:CDS |
TTCGGATTGATCGGAACCAG+AGG | 0.606360 | 5.4:+56184789 | None:intergenic |
TATATCCTAATGACCCAGCA+TGG | 0.606697 | 5.4:-56181261 | MS.gene26077:CDS |
GAGGTTGTTGATGTGTGAGG+CGG | 0.608742 | 5.4:+56184945 | None:intergenic |
TGCAACAATACTTGGAGCGG+AGG | 0.610817 | 5.4:-56177734 | MS.gene26077:intron |
ACTTATCGATTGTCTTGTGG+CGG | 0.611390 | 5.4:-56184716 | MS.gene26077:CDS |
ATCATCGACAATAATGAGAA+CGG | 0.612651 | 5.4:-56177207 | MS.gene26077:CDS |
ATCATTCTCTGAAAAGAGAG+AGG | 0.615510 | 5.4:+56177272 | None:intergenic |
ATAACCAATGCACCAGAAGG+TGG | 0.616650 | 5.4:+56180062 | None:intergenic |
TGCACCAAACAGTTGATCGA+AGG | 0.618010 | 5.4:+56180005 | None:intergenic |
CATATTGTGGATGATGCACT+CGG | 0.624795 | 5.4:+56183301 | None:intergenic |
ATACATCTGATTTAGAAATG+TGG | 0.629117 | 5.4:-56183235 | MS.gene26077:CDS |
ACTACTGTCCTCCTGTCTCA+CGG | 0.630327 | 5.4:-56177964 | MS.gene26077:intron |
ATCACTGAAATCAAAACCCT+AGG | 0.631706 | 5.4:-56184985 | MS.gene26077:CDS |
GAAAATCGTCCAACTTCGAA+CGG | 0.633700 | 5.4:+56184746 | None:intergenic |
GTAATAACCAATGCACCAGA+AGG | 0.635450 | 5.4:+56180059 | None:intergenic |
AAGCTCACAAGAAATTTGGA+GGG | 0.638699 | 5.4:-56183873 | MS.gene26077:CDS |
GGAACCAGAGGAGGAGCTGG+TGG | 0.642590 | 5.4:+56184801 | None:intergenic |
ATCGATTCGAGGATGTGGTG+AGG | 0.646651 | 5.4:+56184886 | None:intergenic |
GTGAGACAGGAGGACAGTAG+TGG | 0.650028 | 5.4:+56177966 | None:intergenic |
CATTTGCAAAGAAATTGAGT+AGG | 0.655411 | 5.4:-56180100 | MS.gene26077:CDS |
ACTTCGAACGGAGCCACGTG+AGG | 0.663920 | 5.4:+56184758 | None:intergenic |
TGTGCAGTGATTTCTTGACA+AGG | 0.666059 | 5.4:-56181332 | MS.gene26077:intron |
GGATTGATCGGAACCAGAGG+AGG | 0.668743 | 5.4:+56184792 | None:intergenic |
AGGTGGTGTAGTCAGCGTGA+TGG | 0.671351 | 5.4:-56181298 | MS.gene26077:CDS |
AACACTTACCGTGAGACAGG+AGG | 0.675774 | 5.4:+56177956 | None:intergenic |
CATCGACAATAATGAGAACG+GGG | 0.677716 | 5.4:-56177205 | MS.gene26077:CDS |
ACAAGGTCGTATGATGTAGG+TGG | 0.691770 | 5.4:-56181315 | MS.gene26077:CDS |
ATGATGGGATTAGACAGATG+AGG | 0.697642 | 5.4:+56181435 | None:intergenic |
CACCATTGCAGATTACACGG+AGG | 0.732506 | 5.4:-56177335 | MS.gene26077:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 56177143 | 56185067 | 56177143 | ID=MS.gene26077 |
chr5.4 | mRNA | 56177143 | 56185067 | 56177143 | ID=MS.gene26077.t1;Parent=MS.gene26077 |
chr5.4 | exon | 56184600 | 56185067 | 56184600 | ID=MS.gene26077.t1.exon1;Parent=MS.gene26077.t1 |
chr5.4 | CDS | 56184600 | 56185067 | 56184600 | ID=cds.MS.gene26077.t1;Parent=MS.gene26077.t1 |
chr5.4 | exon | 56184409 | 56184482 | 56184409 | ID=MS.gene26077.t1.exon2;Parent=MS.gene26077.t1 |
chr5.4 | CDS | 56184409 | 56184482 | 56184409 | ID=cds.MS.gene26077.t1;Parent=MS.gene26077.t1 |
chr5.4 | exon | 56183859 | 56183920 | 56183859 | ID=MS.gene26077.t1.exon3;Parent=MS.gene26077.t1 |
chr5.4 | CDS | 56183859 | 56183920 | 56183859 | ID=cds.MS.gene26077.t1;Parent=MS.gene26077.t1 |
chr5.4 | exon | 56183667 | 56183718 | 56183667 | ID=MS.gene26077.t1.exon4;Parent=MS.gene26077.t1 |
chr5.4 | CDS | 56183667 | 56183718 | 56183667 | ID=cds.MS.gene26077.t1;Parent=MS.gene26077.t1 |
chr5.4 | exon | 56183225 | 56183325 | 56183225 | ID=MS.gene26077.t1.exon5;Parent=MS.gene26077.t1 |
chr5.4 | CDS | 56183225 | 56183325 | 56183225 | ID=cds.MS.gene26077.t1;Parent=MS.gene26077.t1 |
chr5.4 | exon | 56182726 | 56182775 | 56182726 | ID=MS.gene26077.t1.exon6;Parent=MS.gene26077.t1 |
chr5.4 | CDS | 56182726 | 56182775 | 56182726 | ID=cds.MS.gene26077.t1;Parent=MS.gene26077.t1 |
chr5.4 | exon | 56182421 | 56182522 | 56182421 | ID=MS.gene26077.t1.exon7;Parent=MS.gene26077.t1 |
chr5.4 | CDS | 56182421 | 56182522 | 56182421 | ID=cds.MS.gene26077.t1;Parent=MS.gene26077.t1 |
chr5.4 | exon | 56181429 | 56181487 | 56181429 | ID=MS.gene26077.t1.exon8;Parent=MS.gene26077.t1 |
chr5.4 | CDS | 56181429 | 56181487 | 56181429 | ID=cds.MS.gene26077.t1;Parent=MS.gene26077.t1 |
chr5.4 | exon | 56181173 | 56181347 | 56181173 | ID=MS.gene26077.t1.exon9;Parent=MS.gene26077.t1 |
chr5.4 | CDS | 56181173 | 56181347 | 56181173 | ID=cds.MS.gene26077.t1;Parent=MS.gene26077.t1 |
chr5.4 | exon | 56180001 | 56180174 | 56180001 | ID=MS.gene26077.t1.exon10;Parent=MS.gene26077.t1 |
chr5.4 | CDS | 56180001 | 56180174 | 56180001 | ID=cds.MS.gene26077.t1;Parent=MS.gene26077.t1 |
chr5.4 | exon | 56178447 | 56178597 | 56178447 | ID=MS.gene26077.t1.exon11;Parent=MS.gene26077.t1 |
chr5.4 | CDS | 56178447 | 56178597 | 56178447 | ID=cds.MS.gene26077.t1;Parent=MS.gene26077.t1 |
chr5.4 | exon | 56177965 | 56178022 | 56177965 | ID=MS.gene26077.t1.exon12;Parent=MS.gene26077.t1 |
chr5.4 | CDS | 56177965 | 56178022 | 56177965 | ID=cds.MS.gene26077.t1;Parent=MS.gene26077.t1 |
chr5.4 | exon | 56177735 | 56177840 | 56177735 | ID=MS.gene26077.t1.exon13;Parent=MS.gene26077.t1 |
chr5.4 | CDS | 56177735 | 56177840 | 56177735 | ID=cds.MS.gene26077.t1;Parent=MS.gene26077.t1 |
chr5.4 | exon | 56177143 | 56177346 | 56177143 | ID=MS.gene26077.t1.exon14;Parent=MS.gene26077.t1 |
chr5.4 | CDS | 56177143 | 56177346 | 56177143 | ID=cds.MS.gene26077.t1;Parent=MS.gene26077.t1 |
Gene Sequence |
Protein sequence |