Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25185.t1 | XP_013466552.1 | 97.6 | 531 | 13 | 0 | 1 | 531 | 1 | 531 | 1.00E-180 | 643.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25185.t1 | Q9ZU96 | 73.8 | 535 | 133 | 4 | 1 | 531 | 1 | 532 | 1.2e-108 | 395.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25185.t1 | G8A009 | 97.6 | 531 | 13 | 0 | 1 | 531 | 1 | 531 | 7.3e-181 | 643.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25185.t1 | MTR_1g032100 | 97.363 | 531 | 14 | 0 | 1 | 531 | 1 | 531 | 0.0 | 1067 |
MS.gene25185.t1 | MTR_8g105260 | 76.623 | 539 | 117 | 4 | 1 | 531 | 1 | 538 | 0.0 | 828 |
MS.gene25185.t1 | MTR_2g096190 | 42.939 | 524 | 273 | 8 | 19 | 531 | 36 | 544 | 2.05e-131 | 393 |
MS.gene25185.t1 | MTR_7g117620 | 43.822 | 518 | 263 | 9 | 19 | 531 | 52 | 546 | 6.42e-131 | 392 |
MS.gene25185.t1 | MTR_4g062100 | 44.398 | 482 | 245 | 7 | 14 | 484 | 35 | 504 | 1.02e-130 | 392 |
MS.gene25185.t1 | MTR_1g115575 | 45.342 | 483 | 245 | 7 | 52 | 531 | 127 | 593 | 1.67e-127 | 385 |
MS.gene25185.t1 | MTR_7g100390 | 41.445 | 526 | 281 | 7 | 14 | 531 | 14 | 520 | 8.44e-127 | 380 |
MS.gene25185.t1 | MTR_7g100430 | 43.750 | 480 | 252 | 6 | 53 | 531 | 120 | 582 | 5.83e-112 | 344 |
MS.gene25185.t1 | MTR_2g101310 | 24.717 | 441 | 250 | 8 | 91 | 459 | 138 | 568 | 4.27e-31 | 127 |
MS.gene25185.t1 | MTR_2g101320 | 23.112 | 437 | 263 | 5 | 91 | 459 | 138 | 569 | 1.32e-26 | 114 |
MS.gene25185.t1 | MTR_2g101310 | 30.769 | 182 | 124 | 1 | 91 | 270 | 138 | 319 | 2.06e-23 | 103 |
MS.gene25185.t1 | MTR_3g105650 | 24.866 | 374 | 226 | 9 | 93 | 449 | 39 | 374 | 9.52e-23 | 101 |
MS.gene25185.t1 | MTR_1g069110 | 26.923 | 312 | 205 | 6 | 125 | 414 | 50 | 360 | 9.35e-21 | 95.5 |
MS.gene25185.t1 | MTR_5g085810 | 22.921 | 445 | 290 | 10 | 48 | 460 | 262 | 685 | 4.34e-17 | 85.1 |
MS.gene25185.t1 | MTR_8g073260 | 26.623 | 308 | 177 | 9 | 94 | 384 | 46 | 321 | 6.04e-17 | 83.6 |
MS.gene25185.t1 | MTR_8g068990 | 24.047 | 341 | 210 | 7 | 94 | 413 | 47 | 359 | 4.81e-16 | 80.9 |
MS.gene25185.t1 | MTR_7g099570 | 28.163 | 245 | 155 | 6 | 94 | 318 | 44 | 287 | 2.51e-14 | 76.3 |
MS.gene25185.t1 | MTR_1g059930 | 24.662 | 296 | 174 | 8 | 94 | 371 | 47 | 311 | 2.56e-14 | 75.5 |
MS.gene25185.t1 | MTR_8g039620 | 24.342 | 304 | 194 | 7 | 94 | 385 | 49 | 328 | 3.91e-14 | 75.1 |
MS.gene25185.t1 | MTR_3g085830 | 25.623 | 281 | 165 | 9 | 14 | 267 | 109 | 372 | 1.14e-13 | 74.3 |
MS.gene25185.t1 | MTR_5g085830 | 22.624 | 442 | 284 | 14 | 53 | 460 | 240 | 657 | 1.94e-13 | 73.6 |
MS.gene25185.t1 | MTR_3g016210 | 23.669 | 338 | 199 | 10 | 63 | 371 | 13 | 320 | 2.30e-13 | 72.8 |
MS.gene25185.t1 | MTR_5g085480 | 22.200 | 491 | 316 | 13 | 40 | 482 | 32 | 504 | 3.15e-13 | 72.4 |
MS.gene25185.t1 | MTR_7g021090 | 26.316 | 209 | 134 | 3 | 94 | 290 | 44 | 244 | 3.23e-13 | 72.0 |
MS.gene25185.t1 | MTR_8g069880 | 22.564 | 390 | 233 | 10 | 59 | 411 | 6 | 363 | 5.86e-13 | 71.2 |
MS.gene25185.t1 | MTR_5g085480 | 22.200 | 491 | 316 | 13 | 40 | 482 | 192 | 664 | 6.91e-13 | 71.6 |
MS.gene25185.t1 | MTR_2g096760 | 25.630 | 238 | 144 | 8 | 53 | 273 | 11 | 232 | 8.19e-13 | 70.9 |
MS.gene25185.t1 | MTR_4g063830 | 24.138 | 319 | 203 | 10 | 57 | 352 | 13 | 315 | 4.09e-12 | 68.6 |
MS.gene25185.t1 | MTR_5g043640 | 31.336 | 217 | 131 | 8 | 57 | 265 | 20 | 226 | 1.91e-11 | 64.7 |
MS.gene25185.t1 | MTR_8g066670 | 21.684 | 392 | 215 | 11 | 88 | 413 | 1068 | 1433 | 3.84e-11 | 66.6 |
MS.gene25185.t1 | MTR_2g033050 | 28.571 | 238 | 158 | 7 | 43 | 271 | 151 | 385 | 5.48e-11 | 65.1 |
MS.gene25185.t1 | MTR_8g080080 | 26.842 | 190 | 121 | 3 | 75 | 247 | 205 | 393 | 9.03e-11 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene25185.t1 | AT2G01680 | 66.916 | 535 | 170 | 4 | 1 | 531 | 1 | 532 | 0.0 | 703 |
MS.gene25185.t1 | AT2G31820 | 43.738 | 519 | 270 | 7 | 19 | 531 | 160 | 662 | 1.12e-128 | 390 |
MS.gene25185.t1 | AT1G05640 | 43.269 | 520 | 274 | 7 | 19 | 531 | 122 | 627 | 1.72e-126 | 384 |
MS.gene25185.t1 | AT1G07710 | 41.935 | 527 | 283 | 8 | 14 | 531 | 31 | 543 | 4.15e-125 | 377 |
MS.gene25185.t1 | AT1G07710 | 41.935 | 527 | 283 | 8 | 14 | 531 | 31 | 543 | 4.15e-125 | 377 |
MS.gene25185.t1 | AT5G60070 | 43.545 | 519 | 267 | 10 | 14 | 515 | 36 | 545 | 1.07e-123 | 374 |
MS.gene25185.t1 | AT3G12360 | 41.491 | 523 | 277 | 9 | 21 | 531 | 73 | 578 | 1.34e-120 | 367 |
MS.gene25185.t1 | AT3G12360 | 41.491 | 523 | 277 | 9 | 21 | 531 | 85 | 590 | 2.38e-120 | 366 |
MS.gene25185.t1 | AT3G09550 | 43.750 | 480 | 257 | 4 | 53 | 531 | 147 | 614 | 3.15e-120 | 367 |
MS.gene25185.t1 | AT3G09550 | 43.750 | 480 | 257 | 4 | 53 | 531 | 140 | 607 | 3.49e-120 | 367 |
MS.gene25185.t1 | AT3G09550 | 43.750 | 480 | 257 | 4 | 53 | 531 | 140 | 607 | 3.49e-120 | 367 |
MS.gene25185.t1 | AT5G02620 | 43.000 | 500 | 248 | 9 | 47 | 531 | 47 | 524 | 2.54e-115 | 351 |
MS.gene25185.t1 | AT5G02620 | 43.000 | 500 | 248 | 9 | 47 | 531 | 47 | 524 | 2.54e-115 | 351 |
MS.gene25185.t1 | AT5G02620 | 43.000 | 500 | 248 | 9 | 47 | 531 | 47 | 524 | 2.54e-115 | 351 |
MS.gene25185.t1 | AT5G02620 | 41.300 | 523 | 247 | 10 | 47 | 531 | 47 | 547 | 2.08e-110 | 339 |
MS.gene25185.t1 | AT5G02620 | 41.300 | 523 | 247 | 10 | 47 | 531 | 47 | 547 | 2.08e-110 | 339 |
MS.gene25185.t1 | AT1G34050 | 25.991 | 454 | 298 | 11 | 43 | 485 | 110 | 536 | 1.28e-35 | 140 |
MS.gene25185.t1 | AT5G54710 | 25.895 | 475 | 311 | 10 | 48 | 485 | 94 | 564 | 1.50e-34 | 137 |
MS.gene25185.t1 | AT5G54710 | 25.895 | 475 | 311 | 10 | 48 | 485 | 139 | 609 | 2.12e-34 | 137 |
MS.gene25185.t1 | AT2G24600 | 23.077 | 455 | 315 | 12 | 47 | 478 | 96 | 538 | 1.21e-30 | 126 |
MS.gene25185.t1 | AT2G24600 | 23.077 | 455 | 315 | 12 | 47 | 478 | 96 | 538 | 1.21e-30 | 126 |
MS.gene25185.t1 | AT1G10340 | 21.964 | 560 | 321 | 15 | 12 | 482 | 2 | 534 | 2.68e-27 | 116 |
MS.gene25185.t1 | AT1G10340 | 21.277 | 564 | 324 | 14 | 12 | 482 | 2 | 538 | 4.65e-27 | 115 |
MS.gene25185.t1 | AT5G51160 | 28.698 | 338 | 195 | 10 | 122 | 426 | 44 | 368 | 2.13e-25 | 109 |
MS.gene25185.t1 | AT4G03460 | 26.190 | 378 | 222 | 9 | 53 | 413 | 158 | 495 | 1.97e-22 | 101 |
MS.gene25185.t1 | AT4G03460 | 26.190 | 378 | 222 | 9 | 53 | 413 | 190 | 527 | 3.34e-22 | 100 |
MS.gene25185.t1 | AT4G03490 | 22.885 | 520 | 317 | 15 | 29 | 475 | 52 | 560 | 7.08e-22 | 99.8 |
MS.gene25185.t1 | AT4G03490 | 22.885 | 520 | 317 | 15 | 29 | 475 | 62 | 570 | 7.26e-22 | 99.8 |
MS.gene25185.t1 | AT1G03670 | 24.000 | 450 | 296 | 8 | 52 | 489 | 176 | 591 | 7.46e-22 | 99.8 |
MS.gene25185.t1 | AT5G50140 | 22.682 | 507 | 315 | 13 | 56 | 500 | 27 | 518 | 8.00e-22 | 99.4 |
MS.gene25185.t1 | AT4G03500 | 24.898 | 490 | 281 | 16 | 53 | 483 | 133 | 594 | 1.55e-21 | 99.0 |
MS.gene25185.t1 | AT4G03500 | 24.898 | 490 | 281 | 16 | 53 | 483 | 110 | 571 | 1.64e-21 | 99.0 |
MS.gene25185.t1 | AT4G03500 | 24.898 | 490 | 281 | 16 | 53 | 483 | 110 | 571 | 1.64e-21 | 99.0 |
MS.gene25185.t1 | AT5G54700 | 22.857 | 350 | 214 | 8 | 154 | 495 | 26 | 327 | 1.68e-21 | 96.3 |
MS.gene25185.t1 | AT4G03490 | 22.885 | 520 | 317 | 15 | 29 | 475 | 62 | 570 | 2.46e-21 | 98.6 |
MS.gene25185.t1 | AT4G03490 | 22.701 | 511 | 291 | 14 | 29 | 475 | 42 | 512 | 1.87e-20 | 95.5 |
MS.gene25185.t1 | AT4G03490 | 22.701 | 511 | 291 | 14 | 29 | 475 | 52 | 522 | 2.62e-20 | 95.1 |
MS.gene25185.t1 | AT4G10720 | 23.724 | 392 | 245 | 12 | 94 | 468 | 40 | 394 | 1.14e-18 | 89.0 |
MS.gene25185.t1 | AT2G24600 | 24.090 | 357 | 239 | 11 | 47 | 383 | 96 | 440 | 6.71e-18 | 87.4 |
MS.gene25185.t1 | AT2G24600 | 24.090 | 357 | 239 | 11 | 47 | 383 | 96 | 440 | 6.71e-18 | 87.4 |
MS.gene25185.t1 | AT4G10720 | 23.981 | 417 | 246 | 12 | 94 | 468 | 40 | 427 | 3.20e-17 | 84.7 |
MS.gene25185.t1 | AT5G15500 | 24.611 | 386 | 228 | 12 | 63 | 415 | 9 | 364 | 4.29e-15 | 78.2 |
MS.gene25185.t1 | AT5G54610 | 24.202 | 376 | 233 | 12 | 59 | 415 | 5 | 347 | 1.18e-14 | 76.6 |
MS.gene25185.t1 | AT5G54700 | 28.671 | 143 | 96 | 3 | 334 | 472 | 200 | 340 | 1.23e-14 | 76.6 |
MS.gene25185.t1 | AT4G03480 | 24.403 | 377 | 244 | 7 | 51 | 413 | 307 | 656 | 1.29e-14 | 77.4 |
MS.gene25185.t1 | AT4G03480 | 24.403 | 377 | 244 | 7 | 51 | 413 | 310 | 659 | 1.33e-14 | 77.0 |
MS.gene25185.t1 | AT3G04140 | 30.978 | 184 | 108 | 5 | 83 | 247 | 217 | 400 | 4.85e-13 | 72.4 |
MS.gene25185.t1 | AT3G04140 | 24.773 | 331 | 191 | 10 | 14 | 300 | 106 | 422 | 6.08e-12 | 68.9 |
MS.gene25185.t1 | AT1G14500 | 27.119 | 236 | 154 | 6 | 94 | 313 | 40 | 273 | 1.21e-12 | 70.5 |
MS.gene25185.t1 | AT1G14480 | 27.753 | 227 | 146 | 5 | 96 | 306 | 42 | 266 | 5.15e-12 | 68.6 |
MS.gene25185.t1 | AT4G03450 | 24.458 | 323 | 214 | 5 | 96 | 413 | 228 | 525 | 5.48e-12 | 68.9 |
MS.gene25185.t1 | AT4G03450 | 24.458 | 323 | 214 | 5 | 96 | 413 | 228 | 525 | 7.01e-12 | 68.6 |
MS.gene25185.t1 | AT5G54620 | 24.775 | 222 | 150 | 4 | 94 | 301 | 40 | 258 | 1.91e-11 | 66.6 |
Find 107 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GGATGTGGTGAATGCTATTT+TGG | 0.213298 | 1.3:+17313675 | MS.gene25185:CDS |
AACTACTGTGACAGAATTTA+TGG | 0.213745 | 1.3:-17314452 | None:intergenic |
TCCTATATTCCTGGCATTCT+TGG | 0.224460 | 1.3:-17314278 | None:intergenic |
AAAACTCGCAAACGAGTTTC+TGG | 0.237666 | 1.3:+17314382 | MS.gene25185:CDS |
TGTTTGCATCAAAGATAAAA+AGG | 0.238955 | 1.3:+17313816 | MS.gene25185:CDS |
GGCTACTACTGTAACCGTTT+TGG | 0.267999 | 1.3:+17314789 | MS.gene25185:CDS |
CTTGTTAAGGTTATGTGATT+TGG | 0.269520 | 1.3:+17312699 | MS.gene25185:CDS |
GCACTTCATATGGCTGTAAA+AGG | 0.314512 | 1.3:+17313847 | MS.gene25185:CDS |
GTCTCTTAGCTAGTACTCTC+TGG | 0.317932 | 1.3:-17314891 | None:intergenic |
TGACAGAATTTATGGTGTTT+TGG | 0.321558 | 1.3:-17314444 | None:intergenic |
TTTGTGTTTCGGCGACATTT+TGG | 0.327574 | 1.3:+17314853 | MS.gene25185:CDS |
GCAGCTAAACGTGGCCATTT+AGG | 0.329658 | 1.3:+17312769 | MS.gene25185:CDS |
GCAAGAAACAGCCTTGGATT+TGG | 0.347383 | 1.3:+17314192 | MS.gene25185:CDS |
ACTTGTGCTACTTTGTGTTT+CGG | 0.356090 | 1.3:+17314842 | MS.gene25185:CDS |
TGAATGCTATTGATGCAAAA+AGG | 0.362313 | 1.3:-17314480 | None:intergenic |
TTCAAATCACTTTGGTAGCT+TGG | 0.363305 | 1.3:+17314644 | MS.gene25185:CDS |
AGCTGCTGTTCAAGACCATT+TGG | 0.370230 | 1.3:+17313654 | MS.gene25185:CDS |
ATTTGTTCAGCTTCTTGTTA+AGG | 0.380131 | 1.3:+17312686 | MS.gene25185:CDS |
TTGCACAATGCGGCTAGGTA+TGG | 0.405460 | 1.3:+17313748 | MS.gene25185:CDS |
GCTAATGTCCCAACTAGAAT+TGG | 0.407835 | 1.3:-17314817 | None:intergenic |
TTGTATATAGCTGCAGAAAA+TGG | 0.410625 | 1.3:+17312655 | MS.gene25185:CDS |
TCAAATCACTTTGGTAGCTT+GGG | 0.417875 | 1.3:+17314645 | MS.gene25185:CDS |
ATGGCTTTGTTCAGTTTGCC+AGG | 0.419971 | 1.3:+17314502 | MS.gene25185:CDS |
TACTTGGCCTGAGGCTTGTA+AGG | 0.425680 | 1.3:+17313597 | MS.gene25185:CDS |
AACAAAGGTGAATCCTCAAA+TGG | 0.426507 | 1.3:+17312577 | MS.gene25185:CDS |
AGAAAGCAACAGCCGGAGGC+AGG | 0.430156 | 1.3:+17314532 | MS.gene25185:CDS |
AGCTGCAGAAAATGGTGTTA+AGG | 0.437622 | 1.3:+17312663 | MS.gene25185:CDS |
GCCAAGAATGCCAGGAATAT+AGG | 0.443048 | 1.3:+17314277 | MS.gene25185:CDS |
GCAACAGCCGGAGGCAGGGA+AGG | 0.450570 | 1.3:+17314537 | MS.gene25185:CDS |
ATTTGGAGATACTCAAAATC+AGG | 0.451363 | 1.3:+17312716 | MS.gene25185:CDS |
GGGTCAAACAGCACTTCATA+TGG | 0.457229 | 1.3:+17313837 | MS.gene25185:CDS |
TCAGTTCAATGATGATAGTA+AGG | 0.464242 | 1.3:+17313707 | MS.gene25185:CDS |
TTGGGAACACCAATTCTAGT+TGG | 0.466920 | 1.3:+17314808 | MS.gene25185:CDS |
AATTGATGATGGCCCATTTG+AGG | 0.467275 | 1.3:-17312590 | None:intergenic |
TGGGAACACCAATTCTAGTT+GGG | 0.468251 | 1.3:+17314809 | MS.gene25185:CDS |
CAATAAGTGCTTTCACGATA+CGG | 0.475604 | 1.3:-17313777 | None:intergenic |
ATAAAGTGGACTAGTGTTTG+AGG | 0.478223 | 1.3:-17313629 | None:intergenic |
GTCCGATCTGGTGATCTTGA+AGG | 0.482314 | 1.3:+17312529 | MS.gene25185:CDS |
TAGAATTGGTGTTCCCAAAA+CGG | 0.489993 | 1.3:-17314803 | None:intergenic |
GGACCACATTGAAAATATCT+TGG | 0.490915 | 1.3:-17312510 | None:intergenic |
TGGTTGTTGGAAAGGAAAGA+TGG | 0.491658 | 1.3:+17314764 | MS.gene25185:CDS |
CTTGGCACCACATTCAGAAA+GGG | 0.495256 | 1.3:-17314260 | None:intergenic |
TGCACAATGCGGCTAGGTAT+GGG | 0.497914 | 1.3:+17313749 | MS.gene25185:CDS |
TCTCTTAGCTAGTACTCTCT+GGG | 0.500367 | 1.3:-17314890 | None:intergenic |
AGATTCATCTCTGGAAATCA+AGG | 0.501491 | 1.3:+17314234 | MS.gene25185:CDS |
GAGAATGATTTGCTTCCACT+TGG | 0.503330 | 1.3:-17314913 | None:intergenic |
TGAACAGCAGCTAAATAAAG+TGG | 0.504357 | 1.3:-17313643 | None:intergenic |
ATGGCTTGTGCGTGCACTTG+TGG | 0.507227 | 1.3:+17314718 | MS.gene25185:CDS |
CTTTGGTAGCTTGGGACACA+AGG | 0.509015 | 1.3:+17314653 | MS.gene25185:CDS |
GAAAGCAACAGCCGGAGGCA+GGG | 0.509958 | 1.3:+17314533 | MS.gene25185:CDS |
CAGCTCTTCACATGGCTACT+CGG | 0.515478 | 1.3:+17313947 | MS.gene25185:CDS |
TCTTGGCACCACATTCAGAA+AGG | 0.517035 | 1.3:-17314261 | None:intergenic |
TTGTCCATGCAGAATGATGC+TGG | 0.517194 | 1.3:+17312622 | MS.gene25185:CDS |
GGAATTGAGGAAAATTCATC+GGG | 0.521997 | 1.3:+17314414 | MS.gene25185:CDS |
TCGCATACCTTACAAGCCTC+AGG | 0.525075 | 1.3:-17313604 | None:intergenic |
GTGGAAGCAAATCATTCTCC+TGG | 0.530052 | 1.3:+17314917 | MS.gene25185:CDS |
CTGGTATAGCTAAGGAATTG+AGG | 0.530895 | 1.3:+17314401 | MS.gene25185:CDS |
CCACATTGAAAATATCTTGG+TGG | 0.531051 | 1.3:-17312507 | None:intergenic |
TAGCATTCACCACATCCAAA+TGG | 0.533118 | 1.3:-17313669 | None:intergenic |
TACTCGGAAAGCTCGTTCGC+AGG | 0.533833 | 1.3:+17313963 | MS.gene25185:CDS |
ACAAAGGTGAATCCTCAAAT+GGG | 0.536340 | 1.3:+17312578 | MS.gene25185:CDS |
AGGAATTGAGGAAAATTCAT+CGG | 0.537584 | 1.3:+17314413 | MS.gene25185:CDS |
TCCGTACGGAGATTCATCTC+TGG | 0.537976 | 1.3:+17314225 | MS.gene25185:CDS |
TAATCAGCAAGAAACAGCCT+TGG | 0.538754 | 1.3:+17314186 | MS.gene25185:CDS |
CACATTGAAAATATCTTGGT+GGG | 0.541241 | 1.3:-17312506 | None:intergenic |
AAGAATTCACAAATTGATGA+TGG | 0.543311 | 1.3:-17312601 | None:intergenic |
TTCTCCAGCATCATTCTGCA+TGG | 0.550912 | 1.3:-17312626 | None:intergenic |
AATGTGGTGCCAAGAATGCC+AGG | 0.559844 | 1.3:+17314269 | MS.gene25185:CDS |
TGTTGCTTTCTATATTGACC+TGG | 0.564706 | 1.3:-17314520 | None:intergenic |
ACGAGTTTCTGGTATAGCTA+AGG | 0.567343 | 1.3:+17314393 | MS.gene25185:CDS |
ACGTTTAGCTGCTACATGAA+AGG | 0.569934 | 1.3:-17312758 | None:intergenic |
CTGCGTTGCACAATGCGGCT+AGG | 0.570252 | 1.3:+17313743 | MS.gene25185:CDS |
TGTTGTTGTTCAAATCACTT+TGG | 0.570912 | 1.3:+17314636 | MS.gene25185:CDS |
CAAAAGACAGAAAGCACTGA+AGG | 0.573255 | 1.3:-17314581 | None:intergenic |
ATATTCGCCTTCCCTGCCTC+CGG | 0.575896 | 1.3:-17314544 | None:intergenic |
AAGTTTATCTGCCAAATCCA+AGG | 0.578992 | 1.3:-17314203 | None:intergenic |
TCGTGAAAGCACTTATTGCA+AGG | 0.581715 | 1.3:+17313782 | MS.gene25185:CDS |
GTACTAGCTAAGAGACCAAG+TGG | 0.582856 | 1.3:+17314898 | MS.gene25185:CDS |
AAGGAAGCCCTTTCTGAATG+TGG | 0.588384 | 1.3:+17314253 | MS.gene25185:CDS |
GATTAACAAGCTAATGTGGA+TGG | 0.594242 | 1.3:+17314699 | MS.gene25185:CDS |
TCAATATAGAAAGCAACAGC+CGG | 0.602944 | 1.3:+17314525 | MS.gene25185:CDS |
AGGAAAACTGAATGAAGCCA+TGG | 0.605283 | 1.3:+17314297 | MS.gene25185:CDS |
CTCTGCACGTATATCAGATG+AGG | 0.607834 | 1.3:+17314945 | MS.gene25185:CDS |
AGGACACTGTACTTCAGTAG+TGG | 0.610880 | 1.3:+17313867 | MS.gene25185:CDS |
TGTTCAAGACCATTTGGATG+TGG | 0.612236 | 1.3:+17313660 | MS.gene25185:CDS |
GTACTCTCTGGGATTCACTT+CGG | 0.612803 | 1.3:-17314879 | None:intergenic |
CGGTGATTAACAAGCTAATG+TGG | 0.613246 | 1.3:+17314695 | MS.gene25185:CDS |
TTGGCAGATAAACTTCCGTA+CGG | 0.616155 | 1.3:+17314211 | MS.gene25185:CDS |
TCCAGAGATGAATCTCCGTA+CGG | 0.620002 | 1.3:-17314226 | None:intergenic |
CGTGAAAGCACTTATTGCAA+GGG | 0.622452 | 1.3:+17313783 | MS.gene25185:CDS |
GGGCAATACAGCTCTTCACA+TGG | 0.627279 | 1.3:+17313939 | MS.gene25185:CDS |
TGCACGTATATCAGATGAGG+AGG | 0.628241 | 1.3:+17314948 | MS.gene25185:CDS |
GTCCTTCAAGATCACCAGAT+CGG | 0.629086 | 1.3:-17312531 | None:intergenic |
TTTGGTAGCTTGGGACACAA+GGG | 0.645817 | 1.3:+17314654 | MS.gene25185:CDS |
TGATCTTGAAGGACTCAAAG+AGG | 0.646202 | 1.3:+17312540 | MS.gene25185:CDS |
AGCCATGGAACTTAAAAGAG+TGG | 0.647486 | 1.3:+17314312 | MS.gene25185:CDS |
GTGCTGAAACATGTTAACAA+AGG | 0.648845 | 1.3:+17312562 | MS.gene25185:CDS |
GGCTCAAAGACAGATTGTGT+CGG | 0.649739 | 1.3:+17314675 | MS.gene25185:CDS |
ACACTGTACTTCAGTAGTGG+AGG | 0.653628 | 1.3:+17313870 | MS.gene25185:CDS |
TGTTGGAAAGGAAAGATGGA+TGG | 0.673837 | 1.3:+17314768 | MS.gene25185:CDS |
TATACGTGCAGAGTAAGACC+AGG | 0.684943 | 1.3:-17314935 | None:intergenic |
ATATAGAAAGCAACAGCCGG+AGG | 0.691860 | 1.3:+17314528 | MS.gene25185:CDS |
CAAAACTGCGTTGCACAATG+CGG | 0.701505 | 1.3:+17313738 | MS.gene25185:CDS |
TTTCATGTAGCAGCTAAACG+TGG | 0.701994 | 1.3:+17312760 | MS.gene25185:CDS |
TAAGTGCTTTCACGATACGG+AGG | 0.720583 | 1.3:-17313774 | None:intergenic |
GAGAGAAATGAAAAGAGACG+TGG | 0.721398 | 1.3:-17314608 | None:intergenic |
GGTGAGTGATATAAAGCACG+AGG | 0.733499 | 1.3:+17314333 | MS.gene25185:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAATAATATACCTAAA+TGG | - | chr1.3:17312786-17312805 | None:intergenic | 10.0% |
!!! | ATCACATGATTTTAAAAAAT+CGG | - | chr1.3:17313141-17313160 | None:intergenic | 15.0% |
!! | ATTAAACGAAAAAGATAAGA+AGG | + | chr1.3:17313918-17313937 | MS.gene25185:CDS | 20.0% |
!! | CAAAAAACAGAAATCAAATA+TGG | - | chr1.3:17313998-17314017 | None:intergenic | 20.0% |
!! | TTAAACGAAAAAGATAAGAA+GGG | + | chr1.3:17313919-17313938 | MS.gene25185:CDS | 20.0% |
!! | TTAACAAAAAAATCATGTCT+AGG | - | chr1.3:17312877-17312896 | None:intergenic | 20.0% |
!!! | GATTTTTTAAAATCATGTGA+TGG | + | chr1.3:17313140-17313159 | MS.gene25185:intron | 20.0% |
! | AAAATCAGAAACTATTCTGA+TGG | - | chr1.3:17312914-17312933 | None:intergenic | 25.0% |
! | AAAGTAAAATATCAAGGCTA+AGG | + | chr1.3:17313241-17313260 | MS.gene25185:intron | 25.0% |
! | AACATGACATAATTATACAC+AGG | - | chr1.3:17314077-17314096 | None:intergenic | 25.0% |
! | AAGAATTCACAAATTGATGA+TGG | - | chr1.3:17312604-17312623 | None:intergenic | 25.0% |
! | AAGTAAAATATCAAGGCTAA+GGG | + | chr1.3:17313242-17313261 | MS.gene25185:intron | 25.0% |
! | ATCCTTAATATCAGCAATAT+TGG | - | chr1.3:17313515-17313534 | None:intergenic | 25.0% |
! | ATGATGATAGTAAGGAAAAA+TGG | + | chr1.3:17313715-17313734 | MS.gene25185:CDS | 25.0% |
! | ATGCAATTAAGTACAAATTG+TGG | - | chr1.3:17313379-17313398 | None:intergenic | 25.0% |
! | CCTACAAAAGTAAAATATCA+AGG | + | chr1.3:17313235-17313254 | MS.gene25185:intron | 25.0% |
! | GTTTGCATCAAAGATAAAAA+GGG | + | chr1.3:17313817-17313836 | MS.gene25185:CDS | 25.0% |
! | TCGCAATATACATAATCATT+AGG | - | chr1.3:17313094-17313113 | None:intergenic | 25.0% |
! | TGTTTGCATCAAAGATAAAA+AGG | + | chr1.3:17313816-17313835 | MS.gene25185:CDS | 25.0% |
! | TTAATATCAGCAATATTGGA+GGG | - | chr1.3:17313511-17313530 | None:intergenic | 25.0% |
!! | TATACACAGGTCTAAAATAA+TGG | - | chr1.3:17314064-17314083 | None:intergenic | 25.0% |
!!! | CCTTGATATTTTACTTTTGT+AGG | - | chr1.3:17313238-17313257 | None:intergenic | 25.0% |
!!! | CTTTTTCGTTTAATACCATT+GGG | - | chr1.3:17313912-17313931 | None:intergenic | 25.0% |
!!! | GAACAAATTACTCTAAAACA+TGG | - | chr1.3:17312964-17312983 | None:intergenic | 25.0% |
!!! | TCTTTTTCGTTTAATACCAT+TGG | - | chr1.3:17313913-17313932 | None:intergenic | 25.0% |
!!! | TTCATTCTTTTTCGTCAATT+GGG | + | chr1.3:17312829-17312848 | MS.gene25185:intron | 25.0% |
!!! | TTTCATTCTTTTTCGTCAAT+TGG | + | chr1.3:17312828-17312847 | MS.gene25185:intron | 25.0% |
!!! | TTTTTTTCCAGAAATTGTGA+GGG | + | chr1.3:17313564-17313583 | MS.gene25185:intron | 25.0% |
AACTACTGTGACAGAATTTA+TGG | - | chr1.3:17314455-17314474 | None:intergenic | 30.0% | |
AGGAATTGAGGAAAATTCAT+CGG | + | chr1.3:17314413-17314432 | MS.gene25185:CDS | 30.0% | |
ATTTGGAGATACTCAAAATC+AGG | + | chr1.3:17312716-17312735 | MS.gene25185:CDS | 30.0% | |
ATTTGTTCAGCTTCTTGTTA+AGG | + | chr1.3:17312686-17312705 | MS.gene25185:CDS | 30.0% | |
CACATTGAAAATATCTTGGT+GGG | - | chr1.3:17312509-17312528 | None:intergenic | 30.0% | |
CTCCAATATTGCTGATATTA+AGG | + | chr1.3:17313510-17313529 | MS.gene25185:intron | 30.0% | |
CTTAATATCAGCAATATTGG+AGG | - | chr1.3:17313512-17313531 | None:intergenic | 30.0% | |
CTTGTTAAGGTTATGTGATT+TGG | + | chr1.3:17312699-17312718 | MS.gene25185:CDS | 30.0% | |
CTTTATATTGCGGAAAAATG+TGG | + | chr1.3:17313027-17313046 | MS.gene25185:intron | 30.0% | |
GTATCTGCTACATATTCATA+AGG | + | chr1.3:17313197-17313216 | MS.gene25185:intron | 30.0% | |
TCAGTTCAATGATGATAGTA+AGG | + | chr1.3:17313707-17313726 | MS.gene25185:CDS | 30.0% | |
TGAATGCTATTGATGCAAAA+AGG | - | chr1.3:17314483-17314502 | None:intergenic | 30.0% | |
TTGTATATAGCTGCAGAAAA+TGG | + | chr1.3:17312655-17312674 | MS.gene25185:CDS | 30.0% | |
! | ACTCTGAATTTTTGCAAACT+AGG | - | chr1.3:17313295-17313314 | None:intergenic | 30.0% |
! | ATTCAGTTTTCCTATATTCC+TGG | - | chr1.3:17314290-17314309 | None:intergenic | 30.0% |
! | CACATTTTTCCGCAATATAA+AGG | - | chr1.3:17313029-17313048 | None:intergenic | 30.0% |
! | TGACAGAATTTATGGTGTTT+TGG | - | chr1.3:17314447-17314466 | None:intergenic | 30.0% |
! | TGTTGTTGTTCAAATCACTT+TGG | + | chr1.3:17314636-17314655 | MS.gene25185:CDS | 30.0% |
! | TTTTGCATCAATAGCATTCA+TGG | + | chr1.3:17314483-17314502 | MS.gene25185:CDS | 30.0% |
!!! | AATTGGGTATATTTTAGCCA+TGG | + | chr1.3:17312845-17312864 | MS.gene25185:intron | 30.0% |
!!! | CTTTTTTTCCAGAAATTGTG+AGG | + | chr1.3:17313563-17313582 | MS.gene25185:intron | 30.0% |
AAAATCTCCCTCACAATTTC+TGG | - | chr1.3:17313574-17313593 | None:intergenic | 35.0% | |
AACAAAGGTGAATCCTCAAA+TGG | + | chr1.3:17312577-17312596 | MS.gene25185:CDS | 35.0% | |
AAGTTTATCTGCCAAATCCA+AGG | - | chr1.3:17314206-17314225 | None:intergenic | 35.0% | |
ACAAAGGTGAATCCTCAAAT+GGG | + | chr1.3:17312578-17312597 | MS.gene25185:CDS | 35.0% | |
CAATAAGTGCTTTCACGATA+CGG | - | chr1.3:17313780-17313799 | None:intergenic | 35.0% | |
CCACATTGAAAATATCTTGG+TGG | - | chr1.3:17312510-17312529 | None:intergenic | 35.0% | |
GATTAACAAGCTAATGTGGA+TGG | + | chr1.3:17314699-17314718 | MS.gene25185:CDS | 35.0% | |
GGAATTGAGGAAAATTCATC+GGG | + | chr1.3:17314414-17314433 | MS.gene25185:CDS | 35.0% | |
GGACCACATTGAAAATATCT+TGG | - | chr1.3:17312513-17312532 | None:intergenic | 35.0% | |
GTGCTGAAACATGTTAACAA+AGG | + | chr1.3:17312562-17312581 | MS.gene25185:CDS | 35.0% | |
TCAATATAGAAAGCAACAGC+CGG | + | chr1.3:17314525-17314544 | MS.gene25185:CDS | 35.0% | |
TGAACAGCAGCTAAATAAAG+TGG | - | chr1.3:17313646-17313665 | None:intergenic | 35.0% | |
! | AGATTCATCTCTGGAAATCA+AGG | + | chr1.3:17314234-17314253 | MS.gene25185:CDS | 35.0% |
! | CCACCAAGATATTTTCAATG+TGG | + | chr1.3:17312507-17312526 | MS.gene25185:CDS | 35.0% |
! | GCTCACTATCTGAAATAGAT+AGG | - | chr1.3:17314125-17314144 | None:intergenic | 35.0% |
! | TAGAATTGGTGTTCCCAAAA+CGG | - | chr1.3:17314806-17314825 | None:intergenic | 35.0% |
! | TCAAATCACTTTGGTAGCTT+GGG | + | chr1.3:17314645-17314664 | MS.gene25185:CDS | 35.0% |
! | TTCAAATCACTTTGGTAGCT+TGG | + | chr1.3:17314644-17314663 | MS.gene25185:CDS | 35.0% |
! | TTTTCTCGCAATAGCTTTTG+TGG | + | chr1.3:17314744-17314763 | MS.gene25185:CDS | 35.0% |
!! | ACTTGTGCTACTTTGTGTTT+CGG | + | chr1.3:17314842-17314861 | MS.gene25185:CDS | 35.0% |
!! | ATAAAGTGGACTAGTGTTTG+AGG | - | chr1.3:17313632-17313651 | None:intergenic | 35.0% |
!! | TGTTGCTTTCTATATTGACC+TGG | - | chr1.3:17314523-17314542 | None:intergenic | 35.0% |
AAAACTCGCAAACGAGTTTC+TGG | + | chr1.3:17314382-17314401 | MS.gene25185:CDS | 40.0% | |
AAACTGAAGCAAAGCAACCA+TGG | - | chr1.3:17314023-17314042 | None:intergenic | 40.0% | |
AACTGAAGCAAAGCAACCAT+GGG | - | chr1.3:17314022-17314041 | None:intergenic | 40.0% | |
ACGATATCGCGACATCAATT+TGG | - | chr1.3:17313063-17313082 | None:intergenic | 40.0% | |
ACGTTTAGCTGCTACATGAA+AGG | - | chr1.3:17312761-17312780 | None:intergenic | 40.0% | |
AGCCATGGAACTTAAAAGAG+TGG | + | chr1.3:17314312-17314331 | MS.gene25185:CDS | 40.0% | |
AGGAAAACTGAATGAAGCCA+TGG | + | chr1.3:17314297-17314316 | MS.gene25185:CDS | 40.0% | |
CGGTGATTAACAAGCTAATG+TGG | + | chr1.3:17314695-17314714 | MS.gene25185:CDS | 40.0% | |
CTGGTATAGCTAAGGAATTG+AGG | + | chr1.3:17314401-17314420 | MS.gene25185:CDS | 40.0% | |
GAGAGAAATGAAAAGAGACG+TGG | - | chr1.3:17314611-17314630 | None:intergenic | 40.0% | |
GCACTTCATATGGCTGTAAA+AGG | + | chr1.3:17313847-17313866 | MS.gene25185:CDS | 40.0% | |
GCTAATGTCCCAACTAGAAT+TGG | - | chr1.3:17314820-17314839 | None:intergenic | 40.0% | |
TAATCAGCAAGAAACAGCCT+TGG | + | chr1.3:17314186-17314205 | MS.gene25185:CDS | 40.0% | |
TAGCATTCACCACATCCAAA+TGG | - | chr1.3:17313672-17313691 | None:intergenic | 40.0% | |
TATCCAGTGTTGTCAAACAG+CGG | - | chr1.3:17313457-17313476 | None:intergenic | 40.0% | |
TCATGTCTAGGTTTGATCCA+TGG | - | chr1.3:17312865-17312884 | None:intergenic | 40.0% | |
TCCTATATTCCTGGCATTCT+TGG | - | chr1.3:17314281-17314300 | None:intergenic | 40.0% | |
TCTCTTAGCTAGTACTCTCT+GGG | - | chr1.3:17314893-17314912 | None:intergenic | 40.0% | |
TGATCTTGAAGGACTCAAAG+AGG | + | chr1.3:17312540-17312559 | MS.gene25185:CDS | 40.0% | |
TGGTTGTTGGAAAGGAAAGA+TGG | + | chr1.3:17314764-17314783 | MS.gene25185:CDS | 40.0% | |
TGTTCAAGACCATTTGGATG+TGG | + | chr1.3:17313660-17313679 | MS.gene25185:CDS | 40.0% | |
TGTTGGAAAGGAAAGATGGA+TGG | + | chr1.3:17314768-17314787 | MS.gene25185:CDS | 40.0% | |
TTCATAAGGTCTCACATGAC+AGG | + | chr1.3:17313211-17313230 | MS.gene25185:intron | 40.0% | |
TTGGCAGATAAACTTCCGTA+CGG | + | chr1.3:17314211-17314230 | MS.gene25185:CDS | 40.0% | |
TTGGGAACACCAATTCTAGT+TGG | + | chr1.3:17314808-17314827 | MS.gene25185:CDS | 40.0% | |
TTGTCAAACAGCGGAAATAG+TGG | - | chr1.3:17313448-17313467 | None:intergenic | 40.0% | |
TTTCATGTAGCAGCTAAACG+TGG | + | chr1.3:17312760-17312779 | MS.gene25185:CDS | 40.0% | |
! | AGCTGCAGAAAATGGTGTTA+AGG | + | chr1.3:17312663-17312682 | MS.gene25185:CDS | 40.0% |
! | AGCTTTTGTGGTTGTTGGAA+AGG | + | chr1.3:17314756-17314775 | MS.gene25185:CDS | 40.0% |
! | ATTTTCAATGTGGTCCGATC+TGG | + | chr1.3:17312517-17312536 | MS.gene25185:CDS | 40.0% |
! | GATTTTACAAGCTGACCCAA+TGG | + | chr1.3:17313894-17313913 | MS.gene25185:CDS | 40.0% |
! | GCAATAGCTTTTGTGGTTGT+TGG | + | chr1.3:17314751-17314770 | MS.gene25185:CDS | 40.0% |
! | GCTACTACTGTAACCGTTTT+GGG | + | chr1.3:17314790-17314809 | MS.gene25185:CDS | 40.0% |
! | TGGGAACACCAATTCTAGTT+GGG | + | chr1.3:17314809-17314828 | MS.gene25185:CDS | 40.0% |
! | TTCGTAGTTTTCTTGACACG+TGG | + | chr1.3:17314095-17314114 | MS.gene25185:intron | 40.0% |
! | TTTGTGTTTCGGCGACATTT+TGG | + | chr1.3:17314853-17314872 | MS.gene25185:CDS | 40.0% |
!! | AATTGATGATGGCCCATTTG+AGG | - | chr1.3:17312593-17312612 | None:intergenic | 40.0% |
!! | ACGAGTTTCTGGTATAGCTA+AGG | + | chr1.3:17314393-17314412 | MS.gene25185:CDS | 40.0% |
!! | CAAAAGACAGAAAGCACTGA+AGG | - | chr1.3:17314584-17314603 | None:intergenic | 40.0% |
!! | CGTGAAAGCACTTATTGCAA+GGG | + | chr1.3:17313783-17313802 | MS.gene25185:CDS | 40.0% |
!! | GAGAATGATTTGCTTCCACT+TGG | - | chr1.3:17314916-17314935 | None:intergenic | 40.0% |
!! | GGATGTGGTGAATGCTATTT+TGG | + | chr1.3:17313675-17313694 | MS.gene25185:CDS | 40.0% |
!! | TCGTGAAAGCACTTATTGCA+AGG | + | chr1.3:17313782-17313801 | MS.gene25185:CDS | 40.0% |
!! | TGAGGGAGATTTTGAGTACT+TGG | + | chr1.3:17313581-17313600 | MS.gene25185:CDS | 40.0% |
!!! | CACCACTCTTTTAAGTTCCA+TGG | - | chr1.3:17314317-17314336 | None:intergenic | 40.0% |
!!! | GATTTCTGTTTTTTGCCCCA+TGG | + | chr1.3:17314003-17314022 | MS.gene25185:intron | 40.0% |
AAGGAAGCCCTTTCTGAATG+TGG | + | chr1.3:17314253-17314272 | MS.gene25185:CDS | 45.0% | |
ACACTGTACTTCAGTAGTGG+AGG | + | chr1.3:17313870-17313889 | MS.gene25185:CDS | 45.0% | |
ACTGAAGCAAAGCAACCATG+GGG | - | chr1.3:17314021-17314040 | None:intergenic | 45.0% | |
AGCTGCTGTTCAAGACCATT+TGG | + | chr1.3:17313654-17313673 | MS.gene25185:CDS | 45.0% | |
AGGACACTGTACTTCAGTAG+TGG | + | chr1.3:17313867-17313886 | MS.gene25185:CDS | 45.0% | |
ATATAGAAAGCAACAGCCGG+AGG | + | chr1.3:17314528-17314547 | MS.gene25185:CDS | 45.0% | |
CAAAACTGCGTTGCACAATG+CGG | + | chr1.3:17313738-17313757 | MS.gene25185:CDS | 45.0% | |
CTCTGCACGTATATCAGATG+AGG | + | chr1.3:17314945-17314964 | MS.gene25185:CDS | 45.0% | |
CTTGGCACCACATTCAGAAA+GGG | - | chr1.3:17314263-17314282 | None:intergenic | 45.0% | |
GCAAGAAACAGCCTTGGATT+TGG | + | chr1.3:17314192-17314211 | MS.gene25185:CDS | 45.0% | |
GCCAAGAATGCCAGGAATAT+AGG | + | chr1.3:17314277-17314296 | MS.gene25185:CDS | 45.0% | |
GCGGAAAAATGTGGCTGATT+AGG | + | chr1.3:17313036-17313055 | MS.gene25185:intron | 45.0% | |
GGCTCAAAGACAGATTGTGT+CGG | + | chr1.3:17314675-17314694 | MS.gene25185:CDS | 45.0% | |
GGGTCAAACAGCACTTCATA+TGG | + | chr1.3:17313837-17313856 | MS.gene25185:CDS | 45.0% | |
GGTGAGTGATATAAAGCACG+AGG | + | chr1.3:17314333-17314352 | MS.gene25185:CDS | 45.0% | |
GTACTAGCTAAGAGACCAAG+TGG | + | chr1.3:17314898-17314917 | MS.gene25185:CDS | 45.0% | |
GTCCTTCAAGATCACCAGAT+CGG | - | chr1.3:17312534-17312553 | None:intergenic | 45.0% | |
GTCTCTTAGCTAGTACTCTC+TGG | - | chr1.3:17314894-17314913 | None:intergenic | 45.0% | |
GTGGAAGCAAATCATTCTCC+TGG | + | chr1.3:17314917-17314936 | MS.gene25185:CDS | 45.0% | |
TAAGTGCTTTCACGATACGG+AGG | - | chr1.3:17313777-17313796 | None:intergenic | 45.0% | |
TATACGTGCAGAGTAAGACC+AGG | - | chr1.3:17314938-17314957 | None:intergenic | 45.0% | |
TATTGCGATCCTCCCAATTG+CGG | + | chr1.3:17313106-17313125 | MS.gene25185:intron | 45.0% | |
TCCAGAGATGAATCTCCGTA+CGG | - | chr1.3:17314229-17314248 | None:intergenic | 45.0% | |
TCTAGTTGCGATCGTGATTG+TGG | + | chr1.3:17312991-17313010 | MS.gene25185:intron | 45.0% | |
TCTTGGCACCACATTCAGAA+AGG | - | chr1.3:17314264-17314283 | None:intergenic | 45.0% | |
TGCACGTATATCAGATGAGG+AGG | + | chr1.3:17314948-17314967 | MS.gene25185:CDS | 45.0% | |
TGCTGCGAGCCTTTATATTG+CGG | + | chr1.3:17313017-17313036 | MS.gene25185:intron | 45.0% | |
TTCTCCAGCATCATTCTGCA+TGG | - | chr1.3:17312629-17312648 | None:intergenic | 45.0% | |
TTGTCCATGCAGAATGATGC+TGG | + | chr1.3:17312622-17312641 | MS.gene25185:CDS | 45.0% | |
TTTCCGCTGTTTGACAACAC+TGG | + | chr1.3:17313451-17313470 | MS.gene25185:intron | 45.0% | |
! | GGCTACTACTGTAACCGTTT+TGG | + | chr1.3:17314789-17314808 | MS.gene25185:CDS | 45.0% |
! | TTTGGTAGCTTGGGACACAA+GGG | + | chr1.3:17314654-17314673 | MS.gene25185:CDS | 45.0% |
!! | ATGGCTTTGTTCAGTTTGCC+AGG | + | chr1.3:17314502-17314521 | MS.gene25185:CDS | 45.0% |
!! | GATTTTGAGTACTTGGCCTG+AGG | + | chr1.3:17313588-17313607 | MS.gene25185:CDS | 45.0% |
!! | GTACTCTCTGGGATTCACTT+CGG | - | chr1.3:17314882-17314901 | None:intergenic | 45.0% |
CAGCTCTTCACATGGCTACT+CGG | + | chr1.3:17313947-17313966 | MS.gene25185:CDS | 50.0% | |
GATCCTCCCAATTGCGGTTA+GGG | + | chr1.3:17313112-17313131 | MS.gene25185:intron | 50.0% | |
GCAGCTAAACGTGGCCATTT+AGG | + | chr1.3:17312769-17312788 | MS.gene25185:CDS | 50.0% | |
GGGCAATACAGCTCTTCACA+TGG | + | chr1.3:17313939-17313958 | MS.gene25185:CDS | 50.0% | |
GTCCGATCTGGTGATCTTGA+AGG | + | chr1.3:17312529-17312548 | MS.gene25185:CDS | 50.0% | |
TACTTGGCCTGAGGCTTGTA+AGG | + | chr1.3:17313597-17313616 | MS.gene25185:CDS | 50.0% | |
TCCGTACGGAGATTCATCTC+TGG | + | chr1.3:17314225-17314244 | MS.gene25185:CDS | 50.0% | |
TCGCATACCTTACAAGCCTC+AGG | - | chr1.3:17313607-17313626 | None:intergenic | 50.0% | |
TGCACAATGCGGCTAGGTAT+GGG | + | chr1.3:17313749-17313768 | MS.gene25185:CDS | 50.0% | |
TTGCACAATGCGGCTAGGTA+TGG | + | chr1.3:17313748-17313767 | MS.gene25185:CDS | 50.0% | |
! | AATGTGGTGCCAAGAATGCC+AGG | + | chr1.3:17314269-17314288 | MS.gene25185:CDS | 50.0% |
! | CTTTGGTAGCTTGGGACACA+AGG | + | chr1.3:17314653-17314672 | MS.gene25185:CDS | 50.0% |
AGTCCCTAACCGCAATTGGG+AGG | - | chr1.3:17313118-17313137 | None:intergenic | 55.0% | |
ATATTCGCCTTCCCTGCCTC+CGG | - | chr1.3:17314547-17314566 | None:intergenic | 55.0% | |
CGATCCTCCCAATTGCGGTT+AGG | + | chr1.3:17313111-17313130 | MS.gene25185:intron | 55.0% | |
CGGAGTCCCTAACCGCAATT+GGG | - | chr1.3:17313121-17313140 | None:intergenic | 55.0% | |
TACTCGGAAAGCTCGTTCGC+AGG | + | chr1.3:17313963-17313982 | MS.gene25185:CDS | 55.0% | |
TCGGAGTCCCTAACCGCAAT+TGG | - | chr1.3:17313122-17313141 | None:intergenic | 55.0% | |
! | ATGGCTTGTGCGTGCACTTG+TGG | + | chr1.3:17314718-17314737 | MS.gene25185:CDS | 55.0% |
AGAAAGCAACAGCCGGAGGC+AGG | + | chr1.3:17314532-17314551 | MS.gene25185:CDS | 60.0% | |
CTGCGTTGCACAATGCGGCT+AGG | + | chr1.3:17313743-17313762 | MS.gene25185:CDS | 60.0% | |
GAAAGCAACAGCCGGAGGCA+GGG | + | chr1.3:17314533-17314552 | MS.gene25185:CDS | 60.0% | |
GCAACAGCCGGAGGCAGGGA+AGG | + | chr1.3:17314537-17314556 | MS.gene25185:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 17312478 | 17315008 | 17312478 | ID=MS.gene25185 |
chr1.3 | mRNA | 17312478 | 17315008 | 17312478 | ID=MS.gene25185.t1;Parent=MS.gene25185 |
chr1.3 | exon | 17312478 | 17312790 | 17312478 | ID=MS.gene25185.t1.exon1;Parent=MS.gene25185.t1 |
chr1.3 | CDS | 17312478 | 17312790 | 17312478 | ID=cds.MS.gene25185.t1;Parent=MS.gene25185.t1 |
chr1.3 | exon | 17313575 | 17313984 | 17313575 | ID=MS.gene25185.t1.exon2;Parent=MS.gene25185.t1 |
chr1.3 | CDS | 17313575 | 17313984 | 17313575 | ID=cds.MS.gene25185.t1;Parent=MS.gene25185.t1 |
chr1.3 | exon | 17314136 | 17315008 | 17314136 | ID=MS.gene25185.t1.exon3;Parent=MS.gene25185.t1 |
chr1.3 | CDS | 17314136 | 17315008 | 17314136 | ID=cds.MS.gene25185.t1;Parent=MS.gene25185.t1 |
Gene Sequence |
Protein sequence |