AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene62686


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62686.t1 MTR_8g105260 98.889 540 4 1 1 540 1 538 0.0 1098
MS.gene62686.t1 MTR_1g032100 76.895 541 114 4 1 540 1 531 0.0 860
MS.gene62686.t1 MTR_4g062100 46.341 451 228 5 56 496 61 507 1.65e-130 391
MS.gene62686.t1 MTR_2g096190 40.782 537 285 7 14 540 31 544 3.19e-129 388
MS.gene62686.t1 MTR_7g117620 44.286 490 253 8 56 540 72 546 3.10e-127 383
MS.gene62686.t1 MTR_1g115575 41.667 528 288 6 18 540 81 593 1.30e-125 380
MS.gene62686.t1 MTR_7g100390 43.636 495 259 5 54 540 38 520 4.31e-125 377
MS.gene62686.t1 MTR_7g100430 38.258 528 300 7 18 540 76 582 2.52e-103 322
MS.gene62686.t1 MTR_2g101310 24.943 441 256 9 100 470 138 573 5.63e-35 139
MS.gene62686.t1 MTR_3g105650 25.290 431 261 12 102 514 39 426 1.87e-25 109
MS.gene62686.t1 MTR_2g101320 23.570 437 261 7 100 468 138 569 1.57e-24 108
MS.gene62686.t1 MTR_2g101320 22.131 244 154 4 69 277 5 247 9.88e-11 64.7
MS.gene62686.t1 MTR_2g101310 33.516 182 119 2 100 279 138 319 2.57e-23 103
MS.gene62686.t1 MTR_1g069110 24.437 311 214 5 134 423 50 360 2.18e-19 91.3
MS.gene62686.t1 MTR_5g085810 23.789 454 293 10 49 469 252 685 7.65e-16 81.3
MS.gene62686.t1 MTR_8g467780 24.585 301 182 6 103 382 46 322 1.62e-15 79.3
MS.gene62686.t1 MTR_8g068990 24.561 342 207 9 103 422 47 359 7.71e-15 77.4
MS.gene62686.t1 MTR_3g085830 25.874 286 167 8 14 276 109 372 6.03e-14 75.1
MS.gene62686.t1 MTR_8g073260 24.138 290 183 5 103 380 46 310 7.77e-14 74.3
MS.gene62686.t1 MTR_8g039620 25.086 291 182 8 103 380 49 316 8.40e-14 73.9
MS.gene62686.t1 MTR_1g059930 26.351 296 169 9 103 380 47 311 3.29e-13 72.0
MS.gene62686.t1 MTR_5g085830 23.799 437 285 13 62 469 240 657 8.76e-13 71.6
MS.gene62686.t1 MTR_7g021090 27.907 215 133 5 103 304 44 249 1.08e-12 70.5
MS.gene62686.t1 MTR_8g072510 25.234 214 140 3 103 304 45 250 2.55e-12 69.3
MS.gene62686.t1 MTR_7g451420 25.789 190 128 2 103 280 44 232 6.19e-12 67.4
MS.gene62686.t1 MTR_8g066670 22.636 349 216 8 103 422 1110 1433 6.80e-12 68.9
MS.gene62686.t1 MTR_7g099570 26.291 213 145 5 103 304 44 255 2.61e-11 66.6
MS.gene62686.t1 MTR_3g016210 22.000 300 188 5 103 380 45 320 4.10e-11 65.5
MS.gene62686.t1 MTR_2g096760 27.273 220 128 9 62 260 11 219 7.62e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene62686.t1 AT2G01680 69.131 541 157 5 1 540 1 532 0.0 743
MS.gene62686.t1 AT1G07710 44.841 504 260 8 47 540 48 543 6.47e-129 387
MS.gene62686.t1 AT1G07710 44.841 504 260 8 47 540 48 543 6.47e-129 387
MS.gene62686.t1 AT2G31820 42.752 545 279 9 2 540 145 662 4.72e-125 381
MS.gene62686.t1 AT5G60070 42.801 507 258 8 21 515 43 529 1.14e-121 369
MS.gene62686.t1 AT1G05640 44.848 495 256 8 54 540 142 627 7.82e-121 369
MS.gene62686.t1 AT3G12360 40.190 525 296 6 18 540 70 578 1.78e-116 356
MS.gene62686.t1 AT3G12360 40.190 525 296 6 18 540 82 590 2.43e-116 356
MS.gene62686.t1 AT5G02620 42.324 482 249 5 24 492 27 492 1.05e-115 353
MS.gene62686.t1 AT5G02620 42.324 482 249 5 24 492 27 492 1.05e-115 353
MS.gene62686.t1 AT5G02620 42.324 482 249 5 24 492 27 492 1.05e-115 353
MS.gene62686.t1 AT3G09550 40.000 525 300 8 18 540 96 607 3.84e-112 346
MS.gene62686.t1 AT3G09550 40.000 525 300 8 18 540 96 607 3.84e-112 346
MS.gene62686.t1 AT3G09550 40.000 525 300 8 18 540 103 614 4.18e-112 346
MS.gene62686.t1 AT5G02620 40.594 505 248 6 24 492 27 515 6.82e-111 341
MS.gene62686.t1 AT5G02620 40.594 505 248 6 24 492 27 515 6.82e-111 341
MS.gene62686.t1 AT5G54710 27.105 487 311 12 57 506 94 573 2.26e-39 152
MS.gene62686.t1 AT5G54710 27.105 487 311 12 57 506 139 618 5.72e-39 151
MS.gene62686.t1 AT1G34050 26.020 392 264 8 112 494 162 536 3.86e-34 136
MS.gene62686.t1 AT2G24600 21.861 462 311 9 56 485 96 539 2.88e-31 128
MS.gene62686.t1 AT2G24600 21.861 462 311 9 56 485 96 539 2.88e-31 128
MS.gene62686.t1 AT1G10340 22.326 430 290 10 56 459 96 507 1.31e-25 111
MS.gene62686.t1 AT1G10340 22.526 475 276 11 67 459 39 503 2.28e-25 110
MS.gene62686.t1 AT5G51160 27.273 341 202 10 131 438 44 371 1.43e-22 100
MS.gene62686.t1 AT4G03460 25.077 323 205 5 105 422 205 495 3.36e-22 100
MS.gene62686.t1 AT4G03460 25.077 323 205 5 105 422 237 527 3.52e-22 100
MS.gene62686.t1 AT5G54700 24.716 352 206 10 163 505 26 327 5.96e-22 97.8
MS.gene62686.t1 AT1G03670 23.490 447 299 7 56 492 171 584 1.18e-21 99.4
MS.gene62686.t1 AT4G03500 22.588 425 282 7 62 477 212 598 1.63e-20 95.9
MS.gene62686.t1 AT4G03500 22.588 425 282 7 62 477 189 575 2.53e-20 95.1
MS.gene62686.t1 AT4G03500 22.588 425 282 7 62 477 189 575 2.53e-20 95.1
MS.gene62686.t1 AT4G10720 24.781 343 218 10 103 429 40 358 3.55e-19 90.5
MS.gene62686.t1 AT2G24600 23.416 363 234 8 56 392 96 440 3.91e-19 91.3
MS.gene62686.t1 AT2G24600 23.416 363 234 8 56 392 96 440 3.91e-19 91.3
MS.gene62686.t1 AT4G10720 28.509 228 147 4 103 316 40 265 4.84e-19 90.1
MS.gene62686.t1 AT4G03490 22.768 448 313 11 49 476 118 552 2.76e-18 88.6
MS.gene62686.t1 AT4G03490 22.768 448 313 11 49 476 128 562 2.76e-18 89.0
MS.gene62686.t1 AT4G03490 23.235 439 284 10 49 476 108 504 5.26e-18 88.2
MS.gene62686.t1 AT4G03490 23.235 439 284 10 49 476 118 514 5.37e-18 87.8
MS.gene62686.t1 AT4G03490 22.768 448 313 11 49 476 128 562 6.16e-18 87.8
MS.gene62686.t1 AT5G50140 23.094 446 280 14 65 456 27 463 1.91e-17 85.9
MS.gene62686.t1 AT4G03440 22.362 398 285 7 105 498 318 695 6.11e-17 84.7
MS.gene62686.t1 AT4G03440 22.362 398 285 7 105 498 311 688 6.62e-17 84.7
MS.gene62686.t1 AT4G03440 22.362 398 285 7 105 498 311 688 6.62e-17 84.7
MS.gene62686.t1 AT5G54700 31.126 151 100 2 343 489 200 350 3.55e-16 81.6
MS.gene62686.t1 AT4G03480 24.138 377 245 9 60 422 310 659 1.01e-15 80.9
MS.gene62686.t1 AT4G03480 24.138 377 245 9 60 422 307 656 1.13e-15 80.5
MS.gene62686.t1 AT5G15500 23.393 389 208 9 100 424 2 364 8.00e-15 77.4
MS.gene62686.t1 AT4G14390 22.014 427 291 8 56 472 220 614 1.46e-14 77.0
MS.gene62686.t1 AT4G14390 22.703 370 253 6 105 472 295 633 1.84e-14 77.0
MS.gene62686.t1 AT3G04140 28.472 288 174 7 14 276 106 386 2.00e-14 76.6
MS.gene62686.t1 AT1G14480 27.826 230 148 5 103 316 40 267 5.51e-14 74.7
MS.gene62686.t1 AT5G54610 24.199 281 183 6 103 372 40 301 8.43e-14 73.9
MS.gene62686.t1 AT4G14390 23.077 364 244 7 111 472 305 634 8.54e-14 74.7
MS.gene62686.t1 AT5G54620 25.806 186 126 2 103 276 40 225 8.94e-13 70.9
MS.gene62686.t1 AT1G14500 28.571 189 117 5 103 276 40 225 8.17e-11 64.7

Find 102 sgRNAs with CRISPR-Local

Find 157 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATGTGGTAAATGCTATTT+TGG 0.194879 4.2:-1494467 MS.gene62686:CDS
AAAACTCGCCGACGAGTTTC+CGG 0.220434 4.2:-1493278 MS.gene62686:CDS
CATATTCTGAAAGTGCTTCT+TGG 0.231591 4.2:+1493408 None:intergenic
GCTATTACCATAACTGGTTT+AGG 0.239123 4.2:-1492870 MS.gene62686:CDS
TTGGACTGCGGCTGCATATA+GGG 0.263714 4.2:+1494498 None:intergenic
TTTCGCCTCAATAGCATTCT+TGG 0.274513 4.2:-1493177 MS.gene62686:CDS
CAAGAAGCACTTTCAGAATA+TGG 0.283596 4.2:-1493407 MS.gene62686:CDS
TGGATGGCTATTACCATAAC+TGG 0.303698 4.2:-1492876 MS.gene62686:CDS
CTATTACCATAACTGGTTTA+GGG 0.304499 4.2:-1492869 MS.gene62686:CDS
ATCACATAATTTGATCAAAA+AGG 0.308077 4.2:+1495122 None:intergenic
AACCACTGTGACAGAGTTAA+TGG 0.309857 4.2:+1493208 None:intergenic
CTTGGACTGCGGCTGCATAT+AGG 0.309917 4.2:+1494497 None:intergenic
TGTTTCTTGTTGCTTATTGA+TGG 0.315784 4.2:+1493481 None:intergenic
TCTTTGATGCAAACTATTCC+TGG 0.318592 4.2:+1494334 None:intergenic
CTTGGCTATATTCAATTTGC+CGG 0.319423 4.2:-1493159 MS.gene62686:CDS
ACAAGAAACAGCCTTGGATT+TGG 0.348845 4.2:-1493468 MS.gene62686:CDS
TTCAAATCACTTTGGTAGCT+TGG 0.363305 4.2:-1493016 MS.gene62686:CDS
TTACCACATCCAAGTGATCT+TGG 0.370317 4.2:+1494479 None:intergenic
GCACTTATTGTCCGTGATCC+AGG 0.413807 4.2:-1494352 MS.gene62686:CDS
GCTGGATCTGGAGACCTTGA+TGG 0.415271 4.2:-1495315 MS.gene62686:CDS
TCAAATCACTTTGGTAGCTT+GGG 0.417875 4.2:-1493015 MS.gene62686:CDS
CTGCACTACATAATGCTGTT+AGG 0.423394 4.2:-1494399 MS.gene62686:CDS
TTTCAATTCCTTAGCTATAC+CGG 0.426970 4.2:+1493259 None:intergenic
ATATTCACCACAGCTGGATC+TGG 0.428365 4.2:-1495327 MS.gene62686:CDS
AGGTCAAACTGCGCTACATA+TGG 0.431611 4.2:-1494305 MS.gene62686:CDS
TAGGGATACCTATTCTAGTT+GGG 0.436179 4.2:-1492851 MS.gene62686:CDS
TCTCGTTCGTTCAATATAGT+AGG 0.439653 4.2:+1494232 None:intergenic
ACTGTTAGAGAAGCTTAATA+AGG 0.441562 4.2:-1495283 MS.gene62686:CDS
TTAGGGATACCTATTCTAGT+TGG 0.455818 4.2:-1492852 MS.gene62686:CDS
TGCGTCTCTGCGAATCACTT+TGG 0.457508 4.2:+1492778 None:intergenic
GAAGATGGTGATAGAAGTAA+TGG 0.458453 4.2:-1495258 MS.gene62686:CDS
AGGTATCCCTAAACCAGTTA+TGG 0.460403 4.2:+1492863 None:intergenic
GCAGCTAAGCGTGGCCATCT+TGG 0.468196 4.2:-1495048 MS.gene62686:intron
ATTATGAAAGGATCACATAT+AGG 0.475016 4.2:-1493128 MS.gene62686:CDS
AAGCTTAATAAGGAAGAAGA+TGG 0.476184 4.2:-1495273 MS.gene62686:CDS
ATTGAACGAACGAGATAAGA+AGG 0.492542 4.2:-1494224 MS.gene62686:CDS
CAATCAATATTCACCACAGC+TGG 0.492782 4.2:-1495333 MS.gene62686:CDS
ACAGTTTCTTCAACCCATCA+AGG 0.495729 4.2:+1495301 None:intergenic
TTGGCAGATAAACTGCCATA+TGG 0.504776 4.2:-1493449 MS.gene62686:CDS
AGACGCATCAAGAGAGCAAG+TGG 0.505968 4.2:-1492762 MS.gene62686:CDS
CTTTGGTAGCTTGGGACACA+AGG 0.509015 4.2:-1493007 MS.gene62686:CDS
CAATAAGTGCTTTCACAATA+CGG 0.511144 4.2:+1494365 None:intergenic
TCTAAAGCTGACGATCCATA+TGG 0.511646 4.2:+1493434 None:intergenic
GCCAGAGTCCCAACTAGAAT+AGG 0.516542 4.2:+1492843 None:intergenic
CCGGGTCAATATATTATGAA+AGG 0.520442 4.2:-1493140 MS.gene62686:CDS
TACGCGGAAAGGCCGGTCAC+AGG 0.521929 4.2:-1494179 MS.gene62686:intron
CTACATAATGCTGTTAGGTA+TGG 0.523561 4.2:-1494394 MS.gene62686:CDS
CTTCACATGGCTACGCGGAA+AGG 0.523901 4.2:-1494190 MS.gene62686:CDS
GTCACACAACTTACAAACCT+CGG 0.525962 4.2:+1494537 None:intergenic
CTGTTGTTAACAAGCTAATG+TGG 0.526218 4.2:-1492965 MS.gene62686:CDS
CTGGATCTGGAGACCTTGAT+GGG 0.530769 4.2:-1495314 MS.gene62686:CDS
AGAATGCTATTGAGGCGAAA+AGG 0.530984 4.2:+1493180 None:intergenic
TGGACTGCGGCTGCATATAG+GGG 0.531665 4.2:+1494499 None:intergenic
AACATCATCTTCATCTATGT+CGG 0.533622 4.2:-1495229 MS.gene62686:CDS
ACATGGCTACGCGGAAAGGC+CGG 0.534860 4.2:-1494186 MS.gene62686:CDS
ACCTATTCTAGTTGGGACTC+TGG 0.537549 4.2:-1492844 MS.gene62686:CDS
ACAGAGTACATCAGTGGTGG+AGG 0.543153 4.2:-1494272 MS.gene62686:CDS
TGCGGCTGCATATAGGGGAC+TGG 0.546475 4.2:+1494504 None:intergenic
TTGGCTATATTCAATTTGCC+GGG 0.547911 4.2:-1493158 MS.gene62686:CDS
CTGTGGTGAATATTGATTGG+TGG 0.549448 4.2:+1495337 None:intergenic
TAAGCAACAAGAAACAGCCT+TGG 0.552301 4.2:-1493474 MS.gene62686:CDS
CAACTTACAAACCTCGGGCC+AGG 0.555562 4.2:+1494543 None:intergenic
TATAGCCAAGAATGCTATTG+AGG 0.559760 4.2:+1493172 None:intergenic
TCTAACATTGCGGATCATGT+TGG 0.560863 4.2:-1493101 MS.gene62686:CDS
GCTAAATATGCAAGACATGT+TGG 0.561894 4.2:-1493383 MS.gene62686:CDS
GTGGAAGCAAATCCTTCTCA+TGG 0.564022 4.2:-1492743 MS.gene62686:CDS
TCACACAACTTACAAACCTC+GGG 0.565097 4.2:+1494538 None:intergenic
AAGATGGTGATAGAAGTAAT+GGG 0.566107 4.2:-1495257 MS.gene62686:CDS
AGCCGCAGTCCAAGATCACT+TGG 0.570077 4.2:-1494488 MS.gene62686:CDS
TGTTGTTGTTCAAATCACTT+TGG 0.570912 4.2:-1493024 MS.gene62686:CDS
CAGCTGTGGTGAATATTGAT+TGG 0.574642 4.2:+1495334 None:intergenic
TAGCTATACCGGAAACTCGT+CGG 0.577902 4.2:+1493270 None:intergenic
CAGTTTATCTGCCAAATCCA+AGG 0.577959 4.2:+1493457 None:intergenic
ATGTCTCTTCAAAATGATCA+TGG 0.578765 4.2:-1495195 MS.gene62686:CDS
GCGCTACATATGGCTGTCAA+AGG 0.582666 4.2:-1494295 MS.gene62686:CDS
GAATGAGTTTAACCTGTGAC+CGG 0.583506 4.2:+1494167 None:intergenic
GGGTAATACCGCTCTTCACA+TGG 0.583634 4.2:-1494203 MS.gene62686:CDS
CCTTTCATAATATATTGACC+CGG 0.584046 4.2:+1493140 None:intergenic
TTTCATGTTGCAGCTAAGCG+TGG 0.587939 4.2:-1495057 MS.gene62686:CDS
TTTGCTAAGCTATGCAGCTG+TGG 0.589326 4.2:-1493513 MS.gene62686:CDS
GCTGCTTGTGCTTGCACGTG+CGG 0.591233 4.2:-1492942 MS.gene62686:CDS
ACGAGTTTCCGGTATAGCTA+AGG 0.593408 4.2:-1493267 MS.gene62686:CDS
ATCCAAGTGATCTTGGACTG+CGG 0.602312 4.2:+1494486 None:intergenic
AGCTGCACACAATAATCTCA+AGG 0.604525 4.2:-1495154 MS.gene62686:CDS
TGTGGTGAATATTGATTGGT+GGG 0.604833 4.2:+1495338 None:intergenic
AGTCCAAGATCACTTGGATG+TGG 0.606081 4.2:-1494482 MS.gene62686:CDS
TGGTAAAGTAGATGAAGCCA+TGG 0.615814 4.2:-1493363 MS.gene62686:CDS
CCGCTCTTCACATGGCTACG+CGG 0.621597 4.2:-1494195 MS.gene62686:CDS
TTGAACGAACGAGATAAGAA+GGG 0.622382 4.2:-1494223 MS.gene62686:CDS
TGCAAACTATTCCTGGATCA+CGG 0.623341 4.2:+1494341 None:intergenic
TTGTGTGCAGCTATGTAAAG+TGG 0.624900 4.2:+1495165 None:intergenic
GAATAAGTAGAATACCAAGA+TGG 0.625558 4.2:+1495034 None:intergenic
TGTTGTTAACAAGCTAATGT+GGG 0.633610 4.2:-1492964 MS.gene62686:CDS
TGCAGAGTAAGACCATGAGA+AGG 0.634865 4.2:+1492731 None:intergenic
TTTGGTAGCTTGGGACACAA+GGG 0.645817 4.2:-1493006 MS.gene62686:CDS
AGGACAGAGTACATCAGTGG+TGG 0.646873 4.2:-1494275 MS.gene62686:CDS
AGTGAGTGATATAAAGCATG+AGG 0.658021 4.2:-1493327 MS.gene62686:CDS
CACCATTAACTCTGTCACAG+TGG 0.670427 4.2:-1493210 MS.gene62686:CDS
CCGCGTAGCCATGTGAAGAG+CGG 0.680358 4.2:+1494195 None:intergenic
CAAAGGACAGAGTACATCAG+TGG 0.688738 4.2:-1494278 MS.gene62686:CDS
AAGGTCTCCAGATCCAGCTG+TGG 0.699168 4.2:+1495320 None:intergenic
TATAGGAGAATCTAACATTG+CGG 0.704490 4.2:-1493111 MS.gene62686:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGTTTATAGTTAGAAAAAA+TGG - chr4.2:1493613-1493632 MS.gene62686:intron 15.0%
!! ATTAATGAACTTTACAATTA+AGG + chr4.2:1493125-1493144 None:intergenic 15.0%
!! TGTTTATAGTTAGAAAAAAT+GGG - chr4.2:1493614-1493633 MS.gene62686:intron 15.0%
!!! ATTTTTTCTAACTATAAACA+TGG + chr4.2:1493614-1493633 None:intergenic 15.0%
!! ATCACATAATTTGATCAAAA+AGG + chr4.2:1492921-1492940 None:intergenic 20.0%
!!! AAAGTATCTACAACTATATA+TGG + chr4.2:1493906-1493925 None:intergenic 20.0%
!!! TGTTGTACATCTTTTAAATT+TGG - chr4.2:1493249-1493268 MS.gene62686:CDS 20.0%
!!! TTCTTTTTTTCTTTTGTGTT+TGG - chr4.2:1493036-1493055 MS.gene62686:CDS 20.0%
! AAAGACAAGCAAATTATGAA+AGG + chr4.2:1494427-1494446 None:intergenic 25.0%
! ACATTAATGTAAGTCTAATG+TGG - chr4.2:1494110-1494129 MS.gene62686:intron 25.0%
! AGGCTCATTTATATACATAA+TGG - chr4.2:1494381-1494400 MS.gene62686:CDS 25.0%
! ATTATGAAAGGATCACATAT+AGG - chr4.2:1494912-1494931 MS.gene62686:intron 25.0%
! CAACAAAAATACAAAATGAG+AGG + chr4.2:1494467-1494486 None:intergenic 25.0%
! CAATACTAGTTAATTACAAC+TGG - chr4.2:1494249-1494268 MS.gene62686:CDS 25.0%
! CTTACATTGCATAATTGTAA+TGG - chr4.2:1493358-1493377 MS.gene62686:CDS 25.0%
! GTTTGCATCAAAGATAAAAA+AGG - chr4.2:1493715-1493734 MS.gene62686:intron 25.0%
!! TGTTTGGATATTGCTATTAT+TGG - chr4.2:1493052-1493071 MS.gene62686:CDS 25.0%
!!! AAGATTGTAACATTTGCTAT+CGG + chr4.2:1493391-1493410 None:intergenic 25.0%
!!! ATGCTTGAACTTTTTTCTAT+AGG - chr4.2:1494067-1494086 MS.gene62686:intron 25.0%
!!! TTTGTTTTTCGACAACATTT+TGG - chr4.2:1495233-1495252 MS.gene62686:CDS 25.0%
AACATCATCTTCATCTATGT+CGG - chr4.2:1492811-1492830 MS.gene62686:CDS 30.0%
AAGATGGTGATAGAAGTAAT+GGG - chr4.2:1492783-1492802 MS.gene62686:CDS 30.0%
AAGCTTAATAAGGAAGAAGA+TGG - chr4.2:1492767-1492786 MS.gene62686:CDS 30.0%
AATTTCATGTTAAACGTCGT+TGG - chr4.2:1494139-1494158 MS.gene62686:intron 30.0%
ACTGTTAGAGAAGCTTAATA+AGG - chr4.2:1492757-1492776 MS.gene62686:CDS 30.0%
AGGTTGTTGGAAAGAAAAAA+TGG - chr4.2:1495144-1495163 MS.gene62686:CDS 30.0%
ATAAGGAATGAGGATAGTTT+AGG + chr4.2:1494355-1494374 None:intergenic 30.0%
ATGTCTCTTCAAAATGATCA+TGG - chr4.2:1492845-1492864 MS.gene62686:CDS 30.0%
CAATAAGTGCTTTCACAATA+CGG + chr4.2:1493678-1493697 None:intergenic 30.0%
CCTTTCATAATATATTGACC+CGG + chr4.2:1494903-1494922 None:intergenic 30.0%
GAATAAGTAGAATACCAAGA+TGG + chr4.2:1493009-1493028 None:intergenic 30.0%
TAAATGAGCCTCAACTAATA+AGG + chr4.2:1494372-1494391 None:intergenic 30.0%
TAAGGAATGAGGATAGTTTA+GGG + chr4.2:1494354-1494373 None:intergenic 30.0%
TATAGGAGAATCTAACATTG+CGG - chr4.2:1494929-1494948 MS.gene62686:intron 30.0%
TCTACTTACTAGGATAGAAT+TGG - chr4.2:1493323-1493342 MS.gene62686:CDS 30.0%
TGTTGGAAAGAAAAAATGGA+TGG - chr4.2:1495148-1495167 MS.gene62686:CDS 30.0%
TGTTGTTAACAAGCTAATGT+GGG - chr4.2:1495076-1495095 MS.gene62686:CDS 30.0%
TTCAATTACACGAAGTTTCA+GGG - chr4.2:1493153-1493172 MS.gene62686:CDS 30.0%
TTGTTGTCTTTACTGACAAA+TGG - chr4.2:1494481-1494500 MS.gene62686:CDS 30.0%
TTTCAATTCCTTAGCTATAC+CGG + chr4.2:1494784-1494803 None:intergenic 30.0%
! CTATTACCATAACTGGTTTA+GGG - chr4.2:1495171-1495190 MS.gene62686:CDS 30.0%
! TGTTGTTGTTCAAATCACTT+TGG - chr4.2:1495016-1495035 MS.gene62686:intron 30.0%
! TGTTTCTTGTTGCTTATTGA+TGG + chr4.2:1494562-1494581 None:intergenic 30.0%
!!! ACTTTTTTCCAGATATTGTG+AGG - chr4.2:1493461-1493480 MS.gene62686:CDS 30.0%
!!! CTTTTTTCCAGATATTGTGA+GGG - chr4.2:1493462-1493481 MS.gene62686:CDS 30.0%
AAAATCTCCCTCACAATATC+TGG + chr4.2:1493472-1493491 None:intergenic 35.0%
AGTGAGTGATATAAAGCATG+AGG - chr4.2:1494713-1494732 MS.gene62686:intron 35.0%
ATTGAACGAACGAGATAAGA+AGG - chr4.2:1493816-1493835 MS.gene62686:intron 35.0%
ATTGGATGAACTGTGTTTCA+GGG - chr4.2:1493070-1493089 MS.gene62686:CDS 35.0%
CATGTGAAGATCTACTTACT+AGG - chr4.2:1493313-1493332 MS.gene62686:CDS 35.0%
CCGGGTCAATATATTATGAA+AGG - chr4.2:1494900-1494919 MS.gene62686:intron 35.0%
CTACATAATGCTGTTAGGTA+TGG - chr4.2:1493646-1493665 MS.gene62686:intron 35.0%
CTGTTGTTAACAAGCTAATG+TGG - chr4.2:1495075-1495094 MS.gene62686:CDS 35.0%
CTTGGCTATATTCAATTTGC+CGG - chr4.2:1494881-1494900 MS.gene62686:intron 35.0%
GAAGATGGTGATAGAAGTAA+TGG - chr4.2:1492782-1492801 MS.gene62686:CDS 35.0%
GCTAAATATGCAAGACATGT+TGG - chr4.2:1494657-1494676 MS.gene62686:intron 35.0%
GGCTGTGTAAATTTAAGCTA+TGG - chr4.2:1494308-1494327 MS.gene62686:CDS 35.0%
GTTCAATTACACGAAGTTTC+AGG - chr4.2:1493152-1493171 MS.gene62686:CDS 35.0%
TATAGCCAAGAATGCTATTG+AGG + chr4.2:1494871-1494890 None:intergenic 35.0%
TATTGGATGAACTGTGTTTC+AGG - chr4.2:1493069-1493088 MS.gene62686:CDS 35.0%
TCCTCATTCCTTATTAGTTG+AGG - chr4.2:1494361-1494380 MS.gene62686:CDS 35.0%
TCTCGTTCGTTCAATATAGT+AGG + chr4.2:1493811-1493830 None:intergenic 35.0%
TCTTTGATGCAAACTATTCC+TGG + chr4.2:1493709-1493728 None:intergenic 35.0%
TTAGGGATACCTATTCTAGT+TGG - chr4.2:1495188-1495207 MS.gene62686:CDS 35.0%
TTGAACGAACGAGATAAGAA+GGG - chr4.2:1493817-1493836 MS.gene62686:intron 35.0%
TTGGCTATATTCAATTTGCC+GGG - chr4.2:1494882-1494901 MS.gene62686:intron 35.0%
! CTTGGATTTTTCCATCATCT+CGG + chr4.2:1493981-1494000 None:intergenic 35.0%
! GCTATTACCATAACTGGTTT+AGG - chr4.2:1495170-1495189 MS.gene62686:CDS 35.0%
! TAACTAGTATTGAGAACTCG+TGG + chr4.2:1494241-1494260 None:intergenic 35.0%
! TAGGGATACCTATTCTAGTT+GGG - chr4.2:1495189-1495208 MS.gene62686:CDS 35.0%
! TCAAATCACTTTGGTAGCTT+GGG - chr4.2:1495025-1495044 MS.gene62686:intron 35.0%
! TGTGGTGAATATTGATTGGT+GGG + chr4.2:1492705-1492724 None:intergenic 35.0%
! TTCAAATCACTTTGGTAGCT+TGG - chr4.2:1495024-1495043 MS.gene62686:intron 35.0%
!! CAAGAAGCACTTTCAGAATA+TGG - chr4.2:1494633-1494652 MS.gene62686:intron 35.0%
!! CATATTCTGAAAGTGCTTCT+TGG + chr4.2:1494635-1494654 None:intergenic 35.0%
!! GGATGTGGTAAATGCTATTT+TGG - chr4.2:1493573-1493592 MS.gene62686:intron 35.0%
!!! CACTGTTCTTTTAAGTTCCA+TGG + chr4.2:1494697-1494716 None:intergenic 35.0%
!!! GGTCTTGGATTTTAAAGCAT+AGG - chr4.2:1494287-1494306 MS.gene62686:CDS 35.0%
!!! TTTTTTGGCAATCGCTTTTG+AGG - chr4.2:1495124-1495143 MS.gene62686:CDS 35.0%
AACCACTGTGACAGAGTTAA+TGG + chr4.2:1494835-1494854 None:intergenic 40.0%
ACAAGAAACAGCCTTGGATT+TGG - chr4.2:1494572-1494591 MS.gene62686:intron 40.0%
ACAGTTTCTTCAACCCATCA+AGG + chr4.2:1492742-1492761 None:intergenic 40.0%
AGAATGCTATTGAGGCGAAA+AGG + chr4.2:1494863-1494882 None:intergenic 40.0%
AGCTGCACACAATAATCTCA+AGG - chr4.2:1492886-1492905 MS.gene62686:CDS 40.0%
AGGTATCCCTAAACCAGTTA+TGG + chr4.2:1495180-1495199 None:intergenic 40.0%
CAATCAATATTCACCACAGC+TGG - chr4.2:1492707-1492726 MS.gene62686:CDS 40.0%
CAGCTGTGGTGAATATTGAT+TGG + chr4.2:1492709-1492728 None:intergenic 40.0%
CAGTTTATCTGCCAAATCCA+AGG + chr4.2:1494586-1494605 None:intergenic 40.0%
CTGCACTACATAATGCTGTT+AGG - chr4.2:1493641-1493660 MS.gene62686:intron 40.0%
GAATGAGTTTAACCTGTGAC+CGG + chr4.2:1493876-1493895 None:intergenic 40.0%
GACTTCCTGGAATGAATGAT+AGG - chr4.2:1494000-1494019 MS.gene62686:intron 40.0%
GCCTCAACTAATAAGGAATG+AGG + chr4.2:1494365-1494384 None:intergenic 40.0%
GTCACACAACTTACAAACCT+CGG + chr4.2:1493506-1493525 None:intergenic 40.0%
TAAGCAACAAGAAACAGCCT+TGG - chr4.2:1494566-1494585 MS.gene62686:CDS 40.0%
TCACACAACTTACAAACCTC+GGG + chr4.2:1493505-1493524 None:intergenic 40.0%
TCATTCATTCCAGGAAGTCT+TGG + chr4.2:1493999-1494018 None:intergenic 40.0%
TCCTGGAATGAATGATAGGA+AGG - chr4.2:1494004-1494023 MS.gene62686:intron 40.0%
TCCTTCCTATCATTCATTCC+AGG + chr4.2:1494008-1494027 None:intergenic 40.0%
TCTAACATTGCGGATCATGT+TGG - chr4.2:1494939-1494958 MS.gene62686:intron 40.0%
TGCAAACTATTCCTGGATCA+CGG + chr4.2:1493702-1493721 None:intergenic 40.0%
TGGAAAAATCCAAGACTTCC+TGG - chr4.2:1493987-1494006 MS.gene62686:intron 40.0%
TGGATGGCTATTACCATAAC+TGG - chr4.2:1495164-1495183 MS.gene62686:CDS 40.0%
TGGTAAAGTAGATGAAGCCA+TGG - chr4.2:1494677-1494696 MS.gene62686:intron 40.0%
TTACCACATCCAAGTGATCT+TGG + chr4.2:1493564-1493583 None:intergenic 40.0%
TTGGCAGATAAACTGCCATA+TGG - chr4.2:1494591-1494610 MS.gene62686:intron 40.0%
TTGTGTGCAGCTATGTAAAG+TGG + chr4.2:1492878-1492897 None:intergenic 40.0%
TTTCGCCTCAATAGCATTCT+TGG - chr4.2:1494863-1494882 MS.gene62686:intron 40.0%
! AAGCATCATATCACTGGTCT+TGG - chr4.2:1494272-1494291 MS.gene62686:CDS 40.0%
! CTGTGGTGAATATTGATTGG+TGG + chr4.2:1492706-1492725 None:intergenic 40.0%
! TCTAAAGCTGACGATCCATA+TGG + chr4.2:1494609-1494628 None:intergenic 40.0%
!! AACTGGAAGCATCATATCAC+TGG - chr4.2:1494266-1494285 MS.gene62686:CDS 40.0%
AAGTTGTCAGTCCGAGATGA+TGG - chr4.2:1493967-1493986 MS.gene62686:intron 45.0%
ACGAGTTTCCGGTATAGCTA+AGG - chr4.2:1494773-1494792 MS.gene62686:intron 45.0%
AGGTCAAACTGCGCTACATA+TGG - chr4.2:1493735-1493754 MS.gene62686:intron 45.0%
AGTCCAAGATCACTTGGATG+TGG - chr4.2:1493558-1493577 MS.gene62686:intron 45.0%
ATATTCACCACAGCTGGATC+TGG - chr4.2:1492713-1492732 MS.gene62686:CDS 45.0%
ATCCAAGTGATCTTGGACTG+CGG + chr4.2:1493557-1493576 None:intergenic 45.0%
CAAAGGACAGAGTACATCAG+TGG - chr4.2:1493762-1493781 MS.gene62686:intron 45.0%
CACCATTAACTCTGTCACAG+TGG - chr4.2:1494830-1494849 MS.gene62686:intron 45.0%
GTGGAAGCAAATCCTTCTCA+TGG - chr4.2:1495297-1495316 MS.gene62686:CDS 45.0%
TAGCTATACCGGAAACTCGT+CGG + chr4.2:1494773-1494792 None:intergenic 45.0%
TGCAGAGTAAGACCATGAGA+AGG + chr4.2:1495312-1495331 None:intergenic 45.0%
TTTCATGTTGCAGCTAAGCG+TGG - chr4.2:1492983-1493002 MS.gene62686:CDS 45.0%
TTTGCTAAGCTATGCAGCTG+TGG - chr4.2:1494527-1494546 MS.gene62686:CDS 45.0%
! ACCTATTCTAGTTGGGACTC+TGG - chr4.2:1495196-1495215 MS.gene62686:CDS 45.0%
! TTTGGTAGCTTGGGACACAA+GGG - chr4.2:1495034-1495053 MS.gene62686:intron 45.0%
!!! GCAATCGCTTTTGAGGTTGT+TGG - chr4.2:1495131-1495150 MS.gene62686:CDS 45.0%
AAAACTCGCCGACGAGTTTC+CGG - chr4.2:1494762-1494781 MS.gene62686:intron 50.0%
ACAGAGTACATCAGTGGTGG+AGG - chr4.2:1493768-1493787 MS.gene62686:intron 50.0%
AGACGCATCAAGAGAGCAAG+TGG - chr4.2:1495278-1495297 MS.gene62686:CDS 50.0%
AGGACAGAGTACATCAGTGG+TGG - chr4.2:1493765-1493784 MS.gene62686:intron 50.0%
CTGGATCTGGAGACCTTGAT+GGG - chr4.2:1492726-1492745 MS.gene62686:CDS 50.0%
GCACTTATTGTCCGTGATCC+AGG - chr4.2:1493688-1493707 MS.gene62686:intron 50.0%
GCCAGAGTCCCAACTAGAAT+AGG + chr4.2:1495200-1495219 None:intergenic 50.0%
GCGCTACATATGGCTGTCAA+AGG - chr4.2:1493745-1493764 MS.gene62686:intron 50.0%
GGGTAATACCGCTCTTCACA+TGG - chr4.2:1493837-1493856 MS.gene62686:intron 50.0%
TGCGTCTCTGCGAATCACTT+TGG + chr4.2:1495265-1495284 None:intergenic 50.0%
TTGGACTGCGGCTGCATATA+GGG + chr4.2:1493545-1493564 None:intergenic 50.0%
! CTTTGGTAGCTTGGGACACA+AGG - chr4.2:1495033-1495052 MS.gene62686:intron 50.0%
!! TGAGGGAGATTTTGAGTGCC+TGG - chr4.2:1493479-1493498 MS.gene62686:CDS 50.0%
AAGGTCTCCAGATCCAGCTG+TGG + chr4.2:1492723-1492742 None:intergenic 55.0%
AGCCGCAGTCCAAGATCACT+TGG - chr4.2:1493552-1493571 MS.gene62686:intron 55.0%
CAACTTACAAACCTCGGGCC+AGG + chr4.2:1493500-1493519 None:intergenic 55.0%
CTTCACATGGCTACGCGGAA+AGG - chr4.2:1493850-1493869 MS.gene62686:intron 55.0%
CTTGGACTGCGGCTGCATAT+AGG + chr4.2:1493546-1493565 None:intergenic 55.0%
GAGAACTCGTGGAACGTACG+AGG + chr4.2:1494230-1494249 None:intergenic 55.0%
GCTGGATCTGGAGACCTTGA+TGG - chr4.2:1492725-1492744 MS.gene62686:CDS 55.0%
TGGACTGCGGCTGCATATAG+GGG + chr4.2:1493544-1493563 None:intergenic 55.0%
!!! TTGCACGTGCGGCGCTTTTT+TGG - chr4.2:1495109-1495128 MS.gene62686:CDS 55.0%
ACATGGCTACGCGGAAAGGC+CGG - chr4.2:1493854-1493873 MS.gene62686:intron 60.0%
CCGCGTAGCCATGTGAAGAG+CGG + chr4.2:1493848-1493867 None:intergenic 60.0%
CCGCTCTTCACATGGCTACG+CGG - chr4.2:1493845-1493864 MS.gene62686:intron 60.0%
GCAGCTAAGCGTGGCCATCT+TGG - chr4.2:1492992-1493011 MS.gene62686:CDS 60.0%
GCTGCTTGTGCTTGCACGTG+CGG - chr4.2:1495098-1495117 MS.gene62686:CDS 60.0%
TGCGGCTGCATATAGGGGAC+TGG + chr4.2:1493539-1493558 None:intergenic 60.0%
!! GATTTTGAGTGCCTGGCCCG+AGG - chr4.2:1493486-1493505 MS.gene62686:CDS 60.0%
TACGCGGAAAGGCCGGTCAC+AGG - chr4.2:1493861-1493880 MS.gene62686:intron 65.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 1492674 1495388 1492674 ID=MS.gene62686
chr4.2 mRNA 1492674 1495388 1492674 ID=MS.gene62686.t1;Parent=MS.gene62686
chr4.2 exon 1495049 1495388 1495049 ID=MS.gene62686.t1.exon1;Parent=MS.gene62686.t1
chr4.2 CDS 1495049 1495388 1495049 ID=cds.MS.gene62686.t1;Parent=MS.gene62686.t1
chr4.2 exon 1494180 1494589 1494180 ID=MS.gene62686.t1.exon2;Parent=MS.gene62686.t1
chr4.2 CDS 1494180 1494589 1494180 ID=cds.MS.gene62686.t1;Parent=MS.gene62686.t1
chr4.2 exon 1492674 1493546 1492674 ID=MS.gene62686.t1.exon3;Parent=MS.gene62686.t1
chr4.2 CDS 1492674 1493546 1492674 ID=cds.MS.gene62686.t1;Parent=MS.gene62686.t1
Gene Sequence

>MS.gene62686

ATGGAGTCGAAGGGTCTGCGTTTCATGACCCACCAATCAATATTCACCACAGCTGGATCTGGAGACCTTGATGGGTTGAAGAAACTGTTAGAGAAGCTTAATAAGGAAGAAGATGGTGATAGAAGTAATGGGTCATCAACATCATCTTCATCTATGTCGGTTTCTGATGTTATGTCTCTTCAAAATGATCATGGTGAAACACCACTTTACATAGCTGCACACAATAATCTCAAGGAAGTTTTCACCTTTTTGATCAAATTATGTGATTTTGAAGTTGTCAAGATTCGTTCTAAGTCTGATATGAACGCTTTTCATGTTGCAGCTAAGCGTGGCCATCTTGGTATTCTACTTATTCACTTTTTTTCTTTTTTTCTTTTGTGTTTGGATATTGCTATTATTGGATGAACTGTGTTTCAGGGTTCTAACGTGTTATTATTGATCGATTCGTCCTTAATTGTAAAGTTCATTAATCATTTGAGTTCAATTACACGAAGTTTCAGGGTTGCTTAACTTCGAAATTTCAAAATACATGAAGTTTATTGTAAAATTCTATTGAAACTTTTGTTTTCTGATTTTGTTGTACATCTTTTAAATTTGGAATACAAAAGACTTAAAATTGAATTAGTGTTTTGTTAAATTCATGTGAAGATCTACTTACTAGGATAGAATTGGTGTGTAGATTAACTTACATTGCATAATTGTAATGGATAAACACCGATAGCAAATGTTACAATCTTGTTTGTAATGAATATATAATTAAGTTTTTCAATCATGATGTTAATGTCTAACTTTTTTCCAGATATTGTGAGGGAGATTTTGAGTGCCTGGCCCGAGGTTTGTAAGTTGTGTGACTCGACAAACACCAGTCCCCTATATGCAGCCGCAGTCCAAGATCACTTGGATGTGGTAAATGCTATTTTGGATGTTGATGTCAGCTCCATGTTTATAGTTAGAAAAAATGGGAAAACTGCACTACATAATGCTGTTAGGTATGGCGTCGACCGTATTGTGAAAGCACTTATTGTCCGTGATCCAGGAATAGTTTGCATCAAAGATAAAAAAGGTCAAACTGCGCTACATATGGCTGTCAAAGGACAGAGTACATCAGTGGTGGAGGAGATATTACAAGCTGATCCTACTATATTGAACGAACGAGATAAGAAGGGTAATACCGCTCTTCACATGGCTACGCGGAAAGGCCGGTCACAGGTTAAACTCATTCTCTTGAACCATATATAGTTGTAGATACTTTTTAATAATATATTGATTTCAGTTTTATTGTAAACTTAAACAAAGTTGTCAGTCCGAGATGATGGAAAAATCCAAGACTTCCTGGAATGAATGATAGGAAGGAAGTGAAATTATTTATCAGATTGTTATGAAAATATAAAAGATGCTTGAACTTTTTTCTATAGGTACTTAACAGTTGATACACAACATTAATGTAAGTCTAATGTGGTACAATAATTTCATGTTAAACGTCGTTGGTCTTCAATAATTTAACACAACAAATTGTATATCGTAACTAATGTAGATTCTTTCGATGAATTTCTCCTCGTACGTTCCACGAGTTCTCAATACTAGTTAATTACAACTGGAAGCATCATATCACTGGTCTTGGATTTTAAAGCATAGGCTGTGTAAATTTAAGCTATGGTTTATAAGCAATTATATATGCCCTAAACTATCCTCATTCCTTATTAGTTGAGGCTCATTTATATACATAATGGAACAAAATGAATGCTTGTGTCCTTTCATAATTTGCTTGTCTTTTGTTGCAATAAATTCTTCCTCTCATTTTGTATTTTTGTTGTCTTTACTGACAAATGGTTCTTTTGTCAGATAGTGAGCTATTTGCTAAGCTATGCAGCTGTGGATGTTAATGCCATCAATAAGCAACAAGAAACAGCCTTGGATTTGGCAGATAAACTGCCATATGGATCGTCAGCTTTAGAAATCCAAGAAGCACTTTCAGAATATGGTGCTAAATATGCAAGACATGTTGGTAAAGTAGATGAAGCCATGGAACTTAAAAGAACAGTGAGTGATATAAAGCATGAGGTGCAGTCACAGCTCATACAAAACGAAAAAACTCGCCGACGAGTTTCCGGTATAGCTAAGGAATTGAAAAAACTTCATAGAGAAGCTGTTCAAAACACCATTAACTCTGTCACAGTGGTTGCTGTCCTTTTCGCCTCAATAGCATTCTTGGCTATATTCAATTTGCCGGGTCAATATATTATGAAAGGATCACATATAGGAGAATCTAACATTGCGGATCATGTTGGATTTCAAATTTTCTGTCTCTTGAATTCGACGTCTCTTTTCATTTCTCTTGCAGTTGTTGTTGTTCAAATCACTTTGGTAGCTTGGGACACAAGGGCTCAAAAGCAGATCGTGTCTGTTGTTAACAAGCTAATGTGGGCTGCTTGTGCTTGCACGTGCGGCGCTTTTTTGGCAATCGCTTTTGAGGTTGTTGGAAAGAAAAAATGGATGGCTATTACCATAACTGGTTTAGGGATACCTATTCTAGTTGGGACTCTGGCAAGCATGTGCTACTTTGTTTTTCGACAACATTTTGGCATTTTCCAAAGTGATTCGCAGAGACGCATCAAGAGAGCAAGTGGAAGCAAATCCTTCTCATGGTCTTACTCTGCAAATATATCAGATATAGACGAATACACTTCAGACATTGAGAAGATCTATGCTTTGTAA

Protein sequence

>MS.gene62686.t1

MESKGLRFMTHQSIFTTAGSGDLDGLKKLLEKLNKEEDGDRSNGSSTSSSSMSVSDVMSLQNDHGETPLYIAAHNNLKEVFTFLIKLCDFEVVKIRSKSDMNAFHVAAKRGHLDIVREILSAWPEVCKLCDSTNTSPLYAAAVQDHLDVVNAILDVDVSSMFIVRKNGKTALHNAVRYGVDRIVKALIVRDPGIVCIKDKKGQTALHMAVKGQSTSVVEEILQADPTILNERDKKGNTALHMATRKGRSQIVSYLLSYAAVDVNAINKQQETALDLADKLPYGSSALEIQEALSEYGAKYARHVGKVDEAMELKRTVSDIKHEVQSQLIQNEKTRRRVSGIAKELKKLHREAVQNTINSVTVVAVLFASIAFLAIFNLPGQYIMKGSHIGESNIADHVGFQIFCLLNSTSLFISLAVVVVQITLVAWDTRAQKQIVSVVNKLMWAACACTCGAFLAIAFEVVGKKKWMAITITGLGIPILVGTLASMCYFVFRQHFGIFQSDSQRRIKRASGSKSFSWSYSANISDIDEYTSDIEKIYAL