AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene020517

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene020517.t1 MTR_8g105260 98.519 540 6 1 1 540 1 538 0.0 1094
MS.gene020517.t1 MTR_1g032100 76.710 541 115 4 1 540 1 531 0.0 859
MS.gene020517.t1 MTR_4g062100 46.563 451 227 5 56 496 61 507 7.18e-131 392
MS.gene020517.t1 MTR_2g096190 41.243 531 279 7 20 540 37 544 2.24e-129 388
MS.gene020517.t1 MTR_7g117620 44.082 490 254 8 56 540 72 546 2.07e-126 381
MS.gene020517.t1 MTR_7g100390 43.838 495 258 5 54 540 38 520 1.33e-125 378
MS.gene020517.t1 MTR_1g115575 41.333 525 288 6 21 540 84 593 1.64e-124 377
MS.gene020517.t1 MTR_7g100430 37.905 525 300 7 21 540 79 582 5.08e-102 319
MS.gene020517.t1 MTR_2g101310 24.943 441 256 9 100 470 138 573 1.05e-34 139
MS.gene020517.t1 MTR_2g101320 23.341 437 262 6 100 468 138 569 2.21e-24 107
MS.gene020517.t1 MTR_2g101320 22.131 244 154 4 69 277 5 247 7.04e-11 65.5
MS.gene020517.t1 MTR_2g101310 33.516 182 119 2 100 279 138 319 2.62e-23 103
MS.gene020517.t1 MTR_1g069110 24.759 311 213 5 134 423 50 360 1.38e-19 92.0
MS.gene020517.t1 MTR_5g085810 24.009 454 292 10 49 469 252 685 5.68e-16 81.6
MS.gene020517.t1 MTR_8g068990 24.561 342 207 9 103 422 47 359 7.18e-15 77.4
MS.gene020517.t1 MTR_8g467780 24.252 301 183 6 103 382 46 322 7.92e-15 77.4
MS.gene020517.t1 MTR_8g073260 24.138 290 183 5 103 380 46 310 7.50e-14 74.3
MS.gene020517.t1 MTR_8g039620 23.793 290 187 6 103 380 49 316 1.08e-13 73.6
MS.gene020517.t1 MTR_3g085830 27.706 231 142 6 69 276 144 372 1.81e-13 73.6
MS.gene020517.t1 MTR_5g085830 24.027 437 284 13 62 469 240 657 3.90e-13 72.8
MS.gene020517.t1 MTR_7g021090 26.316 209 134 3 103 299 44 244 1.88e-12 69.7
MS.gene020517.t1 MTR_8g072510 25.234 214 140 3 103 304 45 250 2.96e-12 69.3
MS.gene020517.t1 MTR_1g059930 25.676 296 171 9 103 380 47 311 4.59e-12 68.6
MS.gene020517.t1 MTR_8g066670 22.636 349 216 8 103 422 1110 1433 6.57e-12 68.9
MS.gene020517.t1 MTR_7g451420 25.789 190 128 2 103 280 44 232 6.72e-12 67.0
MS.gene020517.t1 MTR_7g099570 26.291 213 145 5 103 304 44 255 2.27e-11 67.0
MS.gene020517.t1 MTR_3g016210 22.000 300 188 5 103 380 45 320 4.72e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene020517.t1 AT2G01680 69.131 541 157 5 1 540 1 532 0.0 743
MS.gene020517.t1 AT1G07710 45.040 504 259 8 47 540 48 543 3.94e-129 388
MS.gene020517.t1 AT1G07710 45.040 504 259 8 47 540 48 543 3.94e-129 388
MS.gene020517.t1 AT2G31820 44.828 493 258 7 54 540 178 662 1.09e-123 378
MS.gene020517.t1 AT5G60070 42.607 514 263 8 14 515 36 529 1.35e-122 371
MS.gene020517.t1 AT1G05640 44.646 495 257 8 54 540 142 627 1.17e-119 366
MS.gene020517.t1 AT5G02620 42.324 482 249 5 24 492 27 492 1.02e-115 353
MS.gene020517.t1 AT5G02620 42.324 482 249 5 24 492 27 492 1.02e-115 353
MS.gene020517.t1 AT5G02620 42.324 482 249 5 24 492 27 492 1.02e-115 353
MS.gene020517.t1 AT3G12360 39.847 522 296 6 21 540 73 578 3.34e-115 353
MS.gene020517.t1 AT3G12360 39.847 522 296 6 21 540 85 590 6.23e-115 353
MS.gene020517.t1 AT5G02620 40.594 505 248 6 24 492 27 515 4.84e-111 341
MS.gene020517.t1 AT5G02620 40.594 505 248 6 24 492 27 515 4.84e-111 341
MS.gene020517.t1 AT3G09550 39.655 522 300 8 21 540 106 614 9.45e-111 343
MS.gene020517.t1 AT3G09550 39.655 522 300 8 21 540 99 607 1.13e-110 342
MS.gene020517.t1 AT3G09550 39.655 522 300 8 21 540 99 607 1.13e-110 342
MS.gene020517.t1 AT5G54710 27.105 487 311 12 57 506 94 573 3.52e-39 151
MS.gene020517.t1 AT5G54710 27.105 487 311 12 57 506 139 618 7.56e-39 150
MS.gene020517.t1 AT1G34050 26.020 392 264 8 112 494 162 536 5.33e-34 136
MS.gene020517.t1 AT2G24600 22.078 462 310 9 56 485 96 539 3.47e-31 128
MS.gene020517.t1 AT2G24600 22.078 462 310 9 56 485 96 539 3.47e-31 128
MS.gene020517.t1 AT1G10340 22.326 430 290 10 56 459 96 507 2.04e-25 110
MS.gene020517.t1 AT1G10340 22.034 531 302 14 12 459 2 503 1.81e-24 107
MS.gene020517.t1 AT5G51160 27.566 341 201 10 131 438 44 371 4.12e-23 102
MS.gene020517.t1 AT4G03460 25.387 323 204 5 105 422 205 495 1.13e-22 102
MS.gene020517.t1 AT4G03460 25.387 323 204 5 105 422 237 527 1.15e-22 102
MS.gene020517.t1 AT1G03670 23.490 447 299 7 56 492 171 584 6.57e-22 100
MS.gene020517.t1 AT5G54700 24.716 352 206 10 163 505 26 327 1.11e-21 97.1
MS.gene020517.t1 AT4G03500 22.824 425 281 7 62 477 212 598 6.41e-21 97.1
MS.gene020517.t1 AT4G03500 22.824 425 281 7 62 477 189 575 8.65e-21 96.7
MS.gene020517.t1 AT4G03500 22.824 425 281 7 62 477 189 575 8.65e-21 96.7
MS.gene020517.t1 AT4G10720 25.073 343 217 10 103 429 40 358 1.62e-19 91.3
MS.gene020517.t1 AT4G10720 26.280 293 181 7 103 380 40 312 2.08e-19 91.3
MS.gene020517.t1 AT2G24600 23.416 363 234 8 56 392 96 440 5.53e-19 90.9
MS.gene020517.t1 AT2G24600 23.416 363 234 8 56 392 96 440 5.53e-19 90.9
MS.gene020517.t1 AT4G03490 22.768 448 313 11 49 476 128 562 4.41e-18 88.2
MS.gene020517.t1 AT4G03490 22.768 448 313 11 49 476 118 552 4.68e-18 88.2
MS.gene020517.t1 AT4G03490 22.768 448 313 11 49 476 128 562 6.32e-18 87.8
MS.gene020517.t1 AT4G03490 23.235 439 284 10 49 476 108 504 6.85e-18 87.8
MS.gene020517.t1 AT4G03490 23.235 439 284 10 49 476 118 514 8.13e-18 87.4
MS.gene020517.t1 AT5G50140 23.094 446 280 14 65 456 27 463 2.10e-17 85.9
MS.gene020517.t1 AT4G03440 22.613 398 284 7 105 498 311 688 3.88e-17 85.5
MS.gene020517.t1 AT4G03440 22.613 398 284 7 105 498 311 688 3.88e-17 85.5
MS.gene020517.t1 AT4G03440 22.613 398 284 7 105 498 318 695 4.49e-17 85.1
MS.gene020517.t1 AT4G03480 24.403 377 244 9 60 422 310 659 3.08e-16 82.4
MS.gene020517.t1 AT4G03480 24.403 377 244 9 60 422 307 656 3.29e-16 82.4
MS.gene020517.t1 AT5G54700 31.126 151 100 2 343 489 200 350 5.80e-16 80.9
MS.gene020517.t1 AT5G15500 23.393 389 208 9 100 424 2 364 1.07e-14 77.0
MS.gene020517.t1 AT4G14390 22.248 427 290 8 56 472 220 614 1.26e-14 77.4
MS.gene020517.t1 AT4G14390 22.973 370 252 6 105 472 295 633 1.54e-14 77.0
MS.gene020517.t1 AT5G54610 24.555 281 182 6 103 372 40 301 3.33e-14 75.1
MS.gene020517.t1 AT3G04140 28.125 288 175 7 14 276 106 386 4.98e-14 75.5
MS.gene020517.t1 AT3G04140 29.891 184 110 5 92 256 217 400 8.69e-11 65.1
MS.gene020517.t1 AT4G14390 23.352 364 243 7 111 472 305 634 7.43e-14 75.1
MS.gene020517.t1 AT1G14480 27.391 230 149 5 103 316 40 267 2.28e-13 72.8
MS.gene020517.t1 AT5G54620 25.806 186 126 2 103 276 40 225 9.52e-13 70.9
MS.gene020517.t1 AT1G14500 29.101 189 116 5 103 276 40 225 1.84e-11 66.6

Find 102 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATGTGGTAAATGCTATTT+TGG 0.194879 4.3:+1389567 MS.gene020517:CDS
AAAACTCGCCGACGAGTTTC+CGG 0.220434 4.3:+1390756 MS.gene020517:CDS
CATATTCTGAAAGTGCTTCT+TGG 0.231591 4.3:-1390626 None:intergenic
GCTATTACCATAACTGGTTT+AGG 0.239123 4.3:+1391164 MS.gene020517:CDS
TTTCGCCTCAATAGCATTCT+TGG 0.274513 4.3:+1390857 MS.gene020517:CDS
CAAGAAGCACTTTCAGAATA+TGG 0.283596 4.3:+1390627 MS.gene020517:CDS
TTGGACTGCGGCAGCATATA+GGG 0.294971 4.3:-1389536 None:intergenic
AACCACTGTGAGAGAGTTAA+TGG 0.303008 4.3:-1390826 None:intergenic
TGGATGGCTATTACCATAAC+TGG 0.303698 4.3:+1391158 MS.gene020517:CDS
CTATTACCATAACTGGTTTA+GGG 0.304499 4.3:+1391165 MS.gene020517:CDS
ATCACATAATTTGATCAAAA+AGG 0.308077 4.3:-1388912 None:intergenic
TGTTTCTTGTTGCTTATTGA+TGG 0.315784 4.3:-1390553 None:intergenic
CTTGGCTATATTCAATTTGC+CGG 0.319423 4.3:+1390875 MS.gene020517:CDS
CTTGGACTGCGGCAGCATAT+AGG 0.333630 4.3:-1389537 None:intergenic
TCTTTGATGCAAACTATTCC+TGG 0.336681 4.3:-1389700 None:intergenic
ACAAGAAACAGCCTTGGATT+TGG 0.348845 4.3:+1390566 MS.gene020517:CDS
TTCAAATCACTTTGGTAGCT+TGG 0.363305 4.3:+1391018 MS.gene020517:CDS
TTACCACATCCAAGTGATCT+TGG 0.370317 4.3:-1389555 None:intergenic
CTGCACTACATAACGCTGTT+AGG 0.375628 4.3:+1389635 MS.gene020517:CDS
GTTGGATCTGGAGACCTTGA+TGG 0.415237 4.3:+1388719 MS.gene020517:CDS
TCAAATCACTTTGGTAGCTT+GGG 0.417875 4.3:+1391019 MS.gene020517:CDS
TTTCAATTCCTTAGCTATAC+CGG 0.426970 4.3:-1390775 None:intergenic
AGGTCAAACTGCGCTACATA+TGG 0.431611 4.3:+1389729 MS.gene020517:CDS
TAGGGATACCTATTCTAGTT+GGG 0.436179 4.3:+1391183 MS.gene020517:CDS
TCTCGTTCGTTCAATATAGT+AGG 0.439653 4.3:-1389802 None:intergenic
CAATAAGTGCTTTCACAATA+CGG 0.440583 4.3:-1389669 None:intergenic
ACTGTTAGAGAAGCTTAATA+AGG 0.441562 4.3:+1388751 MS.gene020517:CDS
ATATTCACCACAGTTGGATC+TGG 0.453733 4.3:+1388707 MS.gene020517:CDS
TTAGGGATACCTATTCTAGT+TGG 0.455818 4.3:+1391182 MS.gene020517:CDS
TGCGTCTCTGCGAATCACTT+TGG 0.457508 4.3:-1391256 None:intergenic
GAAGATGGTGATAGAAGTAA+TGG 0.458453 4.3:+1388776 MS.gene020517:CDS
AGGTATCCCTAAACCAGTTA+TGG 0.460403 4.3:-1391171 None:intergenic
GCAGCTAAGCGTGGCCATCT+TGG 0.468196 4.3:+1388986 MS.gene020517:CDS
ATTATGAAAGGATCACATAT+AGG 0.475016 4.3:+1390906 MS.gene020517:CDS
AAGCTTAATAAGGAAGAAGA+TGG 0.476184 4.3:+1388761 MS.gene020517:CDS
GCACTTATTGTCCGTGAACC+AGG 0.483840 4.3:+1389682 MS.gene020517:CDS
ATTGAACGAACGAGATAAGA+AGG 0.492542 4.3:+1389810 MS.gene020517:CDS
ACAGTTTCTTCAACCCATCA+AGG 0.495729 4.3:-1388733 None:intergenic
TGCAAACTATTCCTGGTTCA+CGG 0.500786 4.3:-1389693 None:intergenic
TTGGCAGATAAACTGCCATA+TGG 0.504776 4.3:+1390585 MS.gene020517:CDS
AGACGCATCAAGAGAGCAAG+TGG 0.505968 4.3:+1391272 MS.gene020517:CDS
CTTTGGTAGCTTGGGACACA+AGG 0.509015 4.3:+1391027 MS.gene020517:CDS
TCTAAAGCTGACGATCCATA+TGG 0.511646 4.3:-1390600 None:intergenic
CAATCAATATTCACCACAGT+TGG 0.516406 4.3:+1388701 MS.gene020517:CDS
GCCAGAGTCCCAACTAGAAT+AGG 0.516542 4.3:-1391191 None:intergenic
CCGGGTCAATATATTATGAA+AGG 0.520442 4.3:+1390894 MS.gene020517:CDS
TACGCGGAAAGGCCGGTCAC+AGG 0.521929 4.3:+1389855 MS.gene020517:CDS
CTTCACATGGCTACGCGGAA+AGG 0.523901 4.3:+1389844 MS.gene020517:CDS
CTACATAACGCTGTTAGGTA+TGG 0.525429 4.3:+1389640 MS.gene020517:CDS
GTCACACAACTTACAAACCT+CGG 0.525962 4.3:-1389497 None:intergenic
CTGTTGTTAACAAGCTAATG+TGG 0.526218 4.3:+1391069 MS.gene020517:CDS
AGAATGCTATTGAGGCGAAA+AGG 0.530984 4.3:-1390854 None:intergenic
AACATCATCTTCATCTATGT+CGG 0.533622 4.3:+1388805 MS.gene020517:CDS
ACATGGCTACGCGGAAAGGC+CGG 0.534860 4.3:+1389848 MS.gene020517:CDS
ACCTATTCTAGTTGGGACTC+TGG 0.537549 4.3:+1391190 MS.gene020517:CDS
ACAGAGTACATCAGTGGTGG+AGG 0.543153 4.3:+1389762 MS.gene020517:CDS
TTGGCTATATTCAATTTGCC+GGG 0.547911 4.3:+1390876 MS.gene020517:CDS
TAAGCAACAAGAAACAGCCT+TGG 0.552301 4.3:+1390560 MS.gene020517:CDS
CAACTTACAAACCTCGGGCC+AGG 0.555562 4.3:-1389491 None:intergenic
TATAGCCAAGAATGCTATTG+AGG 0.559760 4.3:-1390862 None:intergenic
TCTAACATTGCGGATCATGT+TGG 0.560863 4.3:+1390933 MS.gene020517:CDS
GCTAAATATGCAAGACATGT+TGG 0.561894 4.3:+1390651 MS.gene020517:CDS
GTGGAAGCAAATCCTTCTCA+TGG 0.564022 4.3:+1391291 MS.gene020517:CDS
TCACACAACTTACAAACCTC+GGG 0.565097 4.3:-1389496 None:intergenic
TGCGGCAGCATATAGGGGAC+TGG 0.565490 4.3:-1389530 None:intergenic
AAGATGGTGATAGAAGTAAT+GGG 0.566107 4.3:+1388777 MS.gene020517:CDS
ATCCAAGTGATCTTGGACTG+CGG 0.566122 4.3:-1389548 None:intergenic
TTGGATCTGGAGACCTTGAT+GGG 0.566977 4.3:+1388720 MS.gene020517:CDS
TGCCGCAGTCCAAGATCACT+TGG 0.567594 4.3:+1389546 MS.gene020517:CDS
TGTTGTTGTTCAAATCACTT+TGG 0.570912 4.3:+1391010 MS.gene020517:CDS
TGGACTGCGGCAGCATATAG+GGG 0.571980 4.3:-1389535 None:intergenic
CAACTGTGGTGAATATTGAT+TGG 0.577431 4.3:-1388700 None:intergenic
TAGCTATACCGGAAACTCGT+CGG 0.577902 4.3:-1390764 None:intergenic
CAGTTTATCTGCCAAATCCA+AGG 0.577959 4.3:-1390577 None:intergenic
ATGTCTCTTCAAAATGATCA+TGG 0.578765 4.3:+1388839 MS.gene020517:CDS
GCGCTACATATGGCTGTCAA+AGG 0.582666 4.3:+1389739 MS.gene020517:CDS
GAATGAGTTTAACCTGTGAC+CGG 0.583506 4.3:-1389867 None:intergenic
GGGTAATACCGCTCTTCACA+TGG 0.583634 4.3:+1389831 MS.gene020517:CDS
CCTTTCATAATATATTGACC+CGG 0.584046 4.3:-1390894 None:intergenic
TTTCATGTTGCAGCTAAGCG+TGG 0.587939 4.3:+1388977 MS.gene020517:CDS
TTTGCTAAGCTATGCAGCTG+TGG 0.589326 4.3:+1390521 MS.gene020517:CDS
GCTGCTTGTGCTTGCACGTG+CGG 0.591233 4.3:+1391092 MS.gene020517:CDS
ACGAGTTTCCGGTATAGCTA+AGG 0.593408 4.3:+1390767 MS.gene020517:CDS
CTGTGGTGAATATTGATTGG+TGG 0.599501 4.3:-1388697 None:intergenic
AGCTGCACACAATAATCTCA+AGG 0.604525 4.3:+1388880 MS.gene020517:CDS
AGTCCAAGATCACTTGGATG+TGG 0.606081 4.3:+1389552 MS.gene020517:CDS
TGGTAAAGTAGATGAAGCCA+TGG 0.615814 4.3:+1390671 MS.gene020517:CDS
CCGCTCTTCACATGGCTACG+CGG 0.621597 4.3:+1389839 MS.gene020517:CDS
TTGAACGAACGAGATAAGAA+GGG 0.622382 4.3:+1389811 MS.gene020517:CDS
TGTGGTGAATATTGATTGGT+GGG 0.623793 4.3:-1388696 None:intergenic
TTGTGTGCAGCTATGTAAAG+TGG 0.624900 4.3:-1388869 None:intergenic
GAATAAGTAGAATACCAAGA+TGG 0.625558 4.3:-1389000 None:intergenic
TGTTGTTAACAAGCTAATGT+GGG 0.633610 4.3:+1391070 MS.gene020517:CDS
TGCAGAGTAAGACCATGAGA+AGG 0.634865 4.3:-1391303 None:intergenic
TTTGGTAGCTTGGGACACAA+GGG 0.645817 4.3:+1391028 MS.gene020517:CDS
AGGACAGAGTACATCAGTGG+TGG 0.646873 4.3:+1389759 MS.gene020517:CDS
AGTGAGTGATATAAAGCATG+AGG 0.658021 4.3:+1390707 MS.gene020517:CDS
CCGCGTAGCCATGTGAAGAG+CGG 0.680358 4.3:-1389839 None:intergenic
CAAAGGACAGAGTACATCAG+TGG 0.688738 4.3:+1389756 MS.gene020517:CDS
TATAGGAGAATCTAACATTG+CGG 0.704490 4.3:+1390923 MS.gene020517:CDS
CACCATTAACTCTCTCACAG+TGG 0.722741 4.3:+1390824 MS.gene020517:CDS
AAGGTCTCCAGATCCAACTG+TGG 0.733074 4.3:-1388714 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGTTTATAGTTAGAAAAAA+TGG + chr4.3:1389607-1389626 MS.gene020517:CDS 15.0%
!! ATTAATGAACTTTACAATTA+AGG - chr4.3:1389119-1389138 None:intergenic 15.0%
!! TGTTTATAGTTAGAAAAAAT+GGG + chr4.3:1389608-1389627 MS.gene020517:CDS 15.0%
!!! ATTTTTTCTAACTATAAACA+TGG - chr4.3:1389608-1389627 None:intergenic 15.0%
!! ATCACATAATTTGATCAAAA+AGG - chr4.3:1388915-1388934 None:intergenic 20.0%
!!! AAAGTATCTACAACTATATA+TGG - chr4.3:1389900-1389919 None:intergenic 20.0%
!!! TGTTGTACATCTTTTAAATT+TGG + chr4.3:1389243-1389262 MS.gene020517:intron 20.0%
!!! TTCTTTTTTTCTTTTGTGTT+TGG + chr4.3:1389030-1389049 MS.gene020517:intron 20.0%
! AAAGACAAGCAAATTATGAA+AGG - chr4.3:1390421-1390440 None:intergenic 25.0%
! AGGCTCATTTATATACATAA+TGG + chr4.3:1390375-1390394 MS.gene020517:intron 25.0%
! ATTATGAAAGGATCACATAT+AGG + chr4.3:1390906-1390925 MS.gene020517:CDS 25.0%
! CAACAAAAATACAAAATGAG+AGG - chr4.3:1390461-1390480 None:intergenic 25.0%
! CAATACTAGTTAATTACAAC+TGG + chr4.3:1390243-1390262 MS.gene020517:intron 25.0%
! CTTACATTGCATAATTGTAA+TGG + chr4.3:1389352-1389371 MS.gene020517:intron 25.0%
! GTTTGCATCAAAGATAAAAA+AGG + chr4.3:1389709-1389728 MS.gene020517:CDS 25.0%
!! TGTTTGGATATTGCTATTAT+TGG + chr4.3:1389046-1389065 MS.gene020517:intron 25.0%
!!! AAGATTGTAACATTTGCTAT+CGG - chr4.3:1389385-1389404 None:intergenic 25.0%
!!! ATGCTTGAACTTTTTTCTAT+AGG + chr4.3:1390061-1390080 MS.gene020517:intron 25.0%
!!! TTTGTTTTTCGACAACATTT+TGG + chr4.3:1391227-1391246 MS.gene020517:CDS 25.0%
AACATCATCTTCATCTATGT+CGG + chr4.3:1388805-1388824 MS.gene020517:CDS 30.0%
AAGATGGTGATAGAAGTAAT+GGG + chr4.3:1388777-1388796 MS.gene020517:CDS 30.0%
AAGCTTAATAAGGAAGAAGA+TGG + chr4.3:1388761-1388780 MS.gene020517:CDS 30.0%
AATTTCATGTTAAACGTCGT+TGG + chr4.3:1390133-1390152 MS.gene020517:intron 30.0%
ACTGTTAGAGAAGCTTAATA+AGG + chr4.3:1388751-1388770 MS.gene020517:CDS 30.0%
AGGTTGTTGGAAAGAAAAAA+TGG + chr4.3:1391138-1391157 MS.gene020517:CDS 30.0%
ATAAGGAATGAGGATAGTTT+AGG - chr4.3:1390349-1390368 None:intergenic 30.0%
ATGTCTCTTCAAAATGATCA+TGG + chr4.3:1388839-1388858 MS.gene020517:CDS 30.0%
CAATAAGTGCTTTCACAATA+CGG - chr4.3:1389672-1389691 None:intergenic 30.0%
CCTTTCATAATATATTGACC+CGG - chr4.3:1390897-1390916 None:intergenic 30.0%
GAATAAGTAGAATACCAAGA+TGG - chr4.3:1389003-1389022 None:intergenic 30.0%
TAAATGAGCCTCAACTAATA+AGG - chr4.3:1390366-1390385 None:intergenic 30.0%
TAAGGAATGAGGATAGTTTA+GGG - chr4.3:1390348-1390367 None:intergenic 30.0%
TATAGGAGAATCTAACATTG+CGG + chr4.3:1390923-1390942 MS.gene020517:CDS 30.0%
TCTACTTACTAGGATAGAAT+TGG + chr4.3:1389317-1389336 MS.gene020517:intron 30.0%
TGTTGGAAAGAAAAAATGGA+TGG + chr4.3:1391142-1391161 MS.gene020517:CDS 30.0%
TGTTGTTAACAAGCTAATGT+GGG + chr4.3:1391070-1391089 MS.gene020517:CDS 30.0%
TTCAATTACACGAAGTTTCA+GGG + chr4.3:1389147-1389166 MS.gene020517:intron 30.0%
TTGTTGTCTTTACTGACAAA+TGG + chr4.3:1390475-1390494 MS.gene020517:intron 30.0%
TTTCAATTCCTTAGCTATAC+CGG - chr4.3:1390778-1390797 None:intergenic 30.0%
! CTATTACCATAACTGGTTTA+GGG + chr4.3:1391165-1391184 MS.gene020517:CDS 30.0%
! TGTTGTTGTTCAAATCACTT+TGG + chr4.3:1391010-1391029 MS.gene020517:CDS 30.0%
! TGTTTCTTGTTGCTTATTGA+TGG - chr4.3:1390556-1390575 None:intergenic 30.0%
!!! ACTTTTTTCCAGATATTGTG+AGG + chr4.3:1389455-1389474 MS.gene020517:intron 30.0%
!!! CTTTTTTCCAGATATTGTGA+GGG + chr4.3:1389456-1389475 MS.gene020517:intron 30.0%
AAAATCTCCCTCACAATATC+TGG - chr4.3:1389466-1389485 None:intergenic 35.0%
AGTGAGTGATATAAAGCATG+AGG + chr4.3:1390707-1390726 MS.gene020517:CDS 35.0%
ATTGAACGAACGAGATAAGA+AGG + chr4.3:1389810-1389829 MS.gene020517:CDS 35.0%
ATTGGATGAACTGTGTTTCA+GGG + chr4.3:1389064-1389083 MS.gene020517:intron 35.0%
CAACTGTGGTGAATATTGAT+TGG - chr4.3:1388703-1388722 None:intergenic 35.0%
CAATCAATATTCACCACAGT+TGG + chr4.3:1388701-1388720 MS.gene020517:CDS 35.0%
CATGTGAAGATCTACTTACT+AGG + chr4.3:1389307-1389326 MS.gene020517:intron 35.0%
CCGGGTCAATATATTATGAA+AGG + chr4.3:1390894-1390913 MS.gene020517:CDS 35.0%
CTGTTGTTAACAAGCTAATG+TGG + chr4.3:1391069-1391088 MS.gene020517:CDS 35.0%
CTTGGCTATATTCAATTTGC+CGG + chr4.3:1390875-1390894 MS.gene020517:CDS 35.0%
GAAGATGGTGATAGAAGTAA+TGG + chr4.3:1388776-1388795 MS.gene020517:CDS 35.0%
GCTAAATATGCAAGACATGT+TGG + chr4.3:1390651-1390670 MS.gene020517:CDS 35.0%
GGCTGTGTAAATTTAAGCTA+TGG + chr4.3:1390302-1390321 MS.gene020517:intron 35.0%
GTTCAATTACACGAAGTTTC+AGG + chr4.3:1389146-1389165 MS.gene020517:intron 35.0%
TATAGCCAAGAATGCTATTG+AGG - chr4.3:1390865-1390884 None:intergenic 35.0%
TATTGGATGAACTGTGTTTC+AGG + chr4.3:1389063-1389082 MS.gene020517:intron 35.0%
TCCTCATTCCTTATTAGTTG+AGG + chr4.3:1390355-1390374 MS.gene020517:intron 35.0%
TCTCGTTCGTTCAATATAGT+AGG - chr4.3:1389805-1389824 None:intergenic 35.0%
TCTTTGATGCAAACTATTCC+TGG - chr4.3:1389703-1389722 None:intergenic 35.0%
TTAGGGATACCTATTCTAGT+TGG + chr4.3:1391182-1391201 MS.gene020517:CDS 35.0%
TTGAACGAACGAGATAAGAA+GGG + chr4.3:1389811-1389830 MS.gene020517:CDS 35.0%
TTGGCTATATTCAATTTGCC+GGG + chr4.3:1390876-1390895 MS.gene020517:CDS 35.0%
! CTTGGATTTTTCCATCATCT+CGG - chr4.3:1389975-1389994 None:intergenic 35.0%
! GCTATTACCATAACTGGTTT+AGG + chr4.3:1391164-1391183 MS.gene020517:CDS 35.0%
! TAACTAGTATTGAGAACTCG+TGG - chr4.3:1390235-1390254 None:intergenic 35.0%
! TAGGGATACCTATTCTAGTT+GGG + chr4.3:1391183-1391202 MS.gene020517:CDS 35.0%
! TCAAATCACTTTGGTAGCTT+GGG + chr4.3:1391019-1391038 MS.gene020517:CDS 35.0%
! TGTGGTGAATATTGATTGGT+GGG - chr4.3:1388699-1388718 None:intergenic 35.0%
! TTCAAATCACTTTGGTAGCT+TGG + chr4.3:1391018-1391037 MS.gene020517:CDS 35.0%
!! CAAGAAGCACTTTCAGAATA+TGG + chr4.3:1390627-1390646 MS.gene020517:CDS 35.0%
!! CATATTCTGAAAGTGCTTCT+TGG - chr4.3:1390629-1390648 None:intergenic 35.0%
!! GGATGTGGTAAATGCTATTT+TGG + chr4.3:1389567-1389586 MS.gene020517:CDS 35.0%
!!! CACTGTTCTTTTAAGTTCCA+TGG - chr4.3:1390691-1390710 None:intergenic 35.0%
!!! GGTCTTGGATTTTAAAGCAT+AGG + chr4.3:1390281-1390300 MS.gene020517:intron 35.0%
!!! TTTTTTGGCAATCGCTTTTG+AGG + chr4.3:1391118-1391137 MS.gene020517:CDS 35.0%
AACCACTGTGAGAGAGTTAA+TGG - chr4.3:1390829-1390848 None:intergenic 40.0%
ACAAGAAACAGCCTTGGATT+TGG + chr4.3:1390566-1390585 MS.gene020517:CDS 40.0%
ACAGTTTCTTCAACCCATCA+AGG - chr4.3:1388736-1388755 None:intergenic 40.0%
AGAATGCTATTGAGGCGAAA+AGG - chr4.3:1390857-1390876 None:intergenic 40.0%
AGCTGCACACAATAATCTCA+AGG + chr4.3:1388880-1388899 MS.gene020517:CDS 40.0%
AGGTATCCCTAAACCAGTTA+TGG - chr4.3:1391174-1391193 None:intergenic 40.0%
ATATTCACCACAGTTGGATC+TGG + chr4.3:1388707-1388726 MS.gene020517:CDS 40.0%
CAGTTTATCTGCCAAATCCA+AGG - chr4.3:1390580-1390599 None:intergenic 40.0%
CTACATAACGCTGTTAGGTA+TGG + chr4.3:1389640-1389659 MS.gene020517:CDS 40.0%
GAATGAGTTTAACCTGTGAC+CGG - chr4.3:1389870-1389889 None:intergenic 40.0%
GACTTCCTGGAATGAATGAT+AGG + chr4.3:1389994-1390013 MS.gene020517:intron 40.0%
GCCTCAACTAATAAGGAATG+AGG - chr4.3:1390359-1390378 None:intergenic 40.0%
GTCACACAACTTACAAACCT+CGG - chr4.3:1389500-1389519 None:intergenic 40.0%
TAAGCAACAAGAAACAGCCT+TGG + chr4.3:1390560-1390579 MS.gene020517:CDS 40.0%
TCACACAACTTACAAACCTC+GGG - chr4.3:1389499-1389518 None:intergenic 40.0%
TCATTCATTCCAGGAAGTCT+TGG - chr4.3:1389993-1390012 None:intergenic 40.0%
TCCTGGAATGAATGATAGGA+AGG + chr4.3:1389998-1390017 MS.gene020517:intron 40.0%
TCCTTCCTATCATTCATTCC+AGG - chr4.3:1390002-1390021 None:intergenic 40.0%
TCTAACATTGCGGATCATGT+TGG + chr4.3:1390933-1390952 MS.gene020517:CDS 40.0%
TGCAAACTATTCCTGGTTCA+CGG - chr4.3:1389696-1389715 None:intergenic 40.0%
TGGAAAAATCCAAGACTTCC+TGG + chr4.3:1389981-1390000 MS.gene020517:intron 40.0%
TGGATGGCTATTACCATAAC+TGG + chr4.3:1391158-1391177 MS.gene020517:CDS 40.0%
TGGTAAAGTAGATGAAGCCA+TGG + chr4.3:1390671-1390690 MS.gene020517:CDS 40.0%
TTACCACATCCAAGTGATCT+TGG - chr4.3:1389558-1389577 None:intergenic 40.0%
TTGGCAGATAAACTGCCATA+TGG + chr4.3:1390585-1390604 MS.gene020517:CDS 40.0%
TTGTGTGCAGCTATGTAAAG+TGG - chr4.3:1388872-1388891 None:intergenic 40.0%
TTTCGCCTCAATAGCATTCT+TGG + chr4.3:1390857-1390876 MS.gene020517:CDS 40.0%
! AAGCATCATATCACTGGTCT+TGG + chr4.3:1390266-1390285 MS.gene020517:intron 40.0%
! CTGTGGTGAATATTGATTGG+TGG - chr4.3:1388700-1388719 None:intergenic 40.0%
! TCTAAAGCTGACGATCCATA+TGG - chr4.3:1390603-1390622 None:intergenic 40.0%
!! AACTGGAAGCATCATATCAC+TGG + chr4.3:1390260-1390279 MS.gene020517:intron 40.0%
AAGTTGTCAGTCCGAGATGA+TGG + chr4.3:1389961-1389980 MS.gene020517:intron 45.0%
ACGAGTTTCCGGTATAGCTA+AGG + chr4.3:1390767-1390786 MS.gene020517:CDS 45.0%
AGGTCAAACTGCGCTACATA+TGG + chr4.3:1389729-1389748 MS.gene020517:CDS 45.0%
AGTCCAAGATCACTTGGATG+TGG + chr4.3:1389552-1389571 MS.gene020517:CDS 45.0%
ATCCAAGTGATCTTGGACTG+CGG - chr4.3:1389551-1389570 None:intergenic 45.0%
CAAAGGACAGAGTACATCAG+TGG + chr4.3:1389756-1389775 MS.gene020517:CDS 45.0%
CACCATTAACTCTCTCACAG+TGG + chr4.3:1390824-1390843 MS.gene020517:CDS 45.0%
CTGCACTACATAACGCTGTT+AGG + chr4.3:1389635-1389654 MS.gene020517:CDS 45.0%
GTGGAAGCAAATCCTTCTCA+TGG + chr4.3:1391291-1391310 MS.gene020517:CDS 45.0%
TAGCTATACCGGAAACTCGT+CGG - chr4.3:1390767-1390786 None:intergenic 45.0%
TGCAGAGTAAGACCATGAGA+AGG - chr4.3:1391306-1391325 None:intergenic 45.0%
TTGGATCTGGAGACCTTGAT+GGG + chr4.3:1388720-1388739 MS.gene020517:CDS 45.0%
TTTCATGTTGCAGCTAAGCG+TGG + chr4.3:1388977-1388996 MS.gene020517:CDS 45.0%
TTTGCTAAGCTATGCAGCTG+TGG + chr4.3:1390521-1390540 MS.gene020517:CDS 45.0%
! ACCTATTCTAGTTGGGACTC+TGG + chr4.3:1391190-1391209 MS.gene020517:CDS 45.0%
! TTTGGTAGCTTGGGACACAA+GGG + chr4.3:1391028-1391047 MS.gene020517:CDS 45.0%
!!! GCAATCGCTTTTGAGGTTGT+TGG + chr4.3:1391125-1391144 MS.gene020517:CDS 45.0%
AAAACTCGCCGACGAGTTTC+CGG + chr4.3:1390756-1390775 MS.gene020517:CDS 50.0%
AAGGTCTCCAGATCCAACTG+TGG - chr4.3:1388717-1388736 None:intergenic 50.0%
ACAGAGTACATCAGTGGTGG+AGG + chr4.3:1389762-1389781 MS.gene020517:CDS 50.0%
AGACGCATCAAGAGAGCAAG+TGG + chr4.3:1391272-1391291 MS.gene020517:CDS 50.0%
AGGACAGAGTACATCAGTGG+TGG + chr4.3:1389759-1389778 MS.gene020517:CDS 50.0%
GCACTTATTGTCCGTGAACC+AGG + chr4.3:1389682-1389701 MS.gene020517:CDS 50.0%
GCCAGAGTCCCAACTAGAAT+AGG - chr4.3:1391194-1391213 None:intergenic 50.0%
GCGCTACATATGGCTGTCAA+AGG + chr4.3:1389739-1389758 MS.gene020517:CDS 50.0%
GGGTAATACCGCTCTTCACA+TGG + chr4.3:1389831-1389850 MS.gene020517:CDS 50.0%
GTTGGATCTGGAGACCTTGA+TGG + chr4.3:1388719-1388738 MS.gene020517:CDS 50.0%
TGCGTCTCTGCGAATCACTT+TGG - chr4.3:1391259-1391278 None:intergenic 50.0%
TTGGACTGCGGCAGCATATA+GGG - chr4.3:1389539-1389558 None:intergenic 50.0%
! CTTTGGTAGCTTGGGACACA+AGG + chr4.3:1391027-1391046 MS.gene020517:CDS 50.0%
!! TGAGGGAGATTTTGAGTGCC+TGG + chr4.3:1389473-1389492 MS.gene020517:CDS 50.0%
CAACTTACAAACCTCGGGCC+AGG - chr4.3:1389494-1389513 None:intergenic 55.0%
CTTCACATGGCTACGCGGAA+AGG + chr4.3:1389844-1389863 MS.gene020517:CDS 55.0%
CTTGGACTGCGGCAGCATAT+AGG - chr4.3:1389540-1389559 None:intergenic 55.0%
GAGAACTCGTGGAACGTACG+AGG - chr4.3:1390224-1390243 None:intergenic 55.0%
TGCCGCAGTCCAAGATCACT+TGG + chr4.3:1389546-1389565 MS.gene020517:CDS 55.0%
TGGACTGCGGCAGCATATAG+GGG - chr4.3:1389538-1389557 None:intergenic 55.0%
!!! TTGCACGTGCGGCGCTTTTT+TGG + chr4.3:1391103-1391122 MS.gene020517:CDS 55.0%
ACATGGCTACGCGGAAAGGC+CGG + chr4.3:1389848-1389867 MS.gene020517:CDS 60.0%
CCGCGTAGCCATGTGAAGAG+CGG - chr4.3:1389842-1389861 None:intergenic 60.0%
CCGCTCTTCACATGGCTACG+CGG + chr4.3:1389839-1389858 MS.gene020517:CDS 60.0%
GCAGCTAAGCGTGGCCATCT+TGG + chr4.3:1388986-1389005 MS.gene020517:CDS 60.0%
GCTGCTTGTGCTTGCACGTG+CGG + chr4.3:1391092-1391111 MS.gene020517:CDS 60.0%
TGCGGCAGCATATAGGGGAC+TGG - chr4.3:1389533-1389552 None:intergenic 60.0%
!! GATTTTGAGTGCCTGGCCCG+AGG + chr4.3:1389480-1389499 MS.gene020517:CDS 60.0%
TACGCGGAAAGGCCGGTCAC+AGG + chr4.3:1389855-1389874 MS.gene020517:CDS 65.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 1388668 1391382 1388668 ID=MS.gene020517
chr4.3 mRNA 1388668 1391382 1388668 ID=MS.gene020517.t1;Parent=MS.gene020517
chr4.3 exon 1388668 1389007 1388668 ID=MS.gene020517.t1.exon1;Parent=MS.gene020517.t1
chr4.3 CDS 1388668 1389007 1388668 ID=cds.MS.gene020517.t1;Parent=MS.gene020517.t1
chr4.3 exon 1389467 1389876 1389467 ID=MS.gene020517.t1.exon2;Parent=MS.gene020517.t1
chr4.3 CDS 1389467 1389876 1389467 ID=cds.MS.gene020517.t1;Parent=MS.gene020517.t1
chr4.3 exon 1390510 1391382 1390510 ID=MS.gene020517.t1.exon3;Parent=MS.gene020517.t1
chr4.3 CDS 1390510 1391382 1390510 ID=cds.MS.gene020517.t1;Parent=MS.gene020517.t1
Gene Sequence

>MS.gene020517

ATGGAGTCGAAGGGTCTGCGTTTCATGACCCACCAATCAATATTCACCACAGTTGGATCTGGAGACCTTGATGGGTTGAAGAAACTGTTAGAGAAGCTTAATAAGGAAGAAGATGGTGATAGAAGTAATGGGTCATCAACATCATCTTCATCTATGTCGGTTTCTGATGTTATGTCTCTTCAAAATGATCATGGTGAAACACCACTTTACATAGCTGCACACAATAATCTCAAGGAAGTTTTCACCTTTTTGATCAAATTATGTGATTTTGAAGTTGTCAAGATTCGTTCTAAGTCTGATATGAACGCTTTTCATGTTGCAGCTAAGCGTGGCCATCTTGGTATTCTACTTATTCACTTTTTTTCTTTTTTTCTTTTGTGTTTGGATATTGCTATTATTGGATGAACTGTGTTTCAGGGTTCTAACGTGTTATTATTGATCGATTCGTCCTTAATTGTAAAGTTCATTAATCATTTGAGTTCAATTACACGAAGTTTCAGGGTTGCTTAACTTCGAAATTTCAAAATACATGAAGTTTATTGTAAAATTCTATTGAAACTTTTGTTTTCTGATTTTGTTGTACATCTTTTAAATTTGGAATACAAAAGACTTAAAATTGAATTAGTGTTTTGTTAAATTCATGTGAAGATCTACTTACTAGGATAGAATTGGTGTGTAGATTAACTTACATTGCATAATTGTAATGGATAAACACCGATAGCAAATGTTACAATCTTGTTTGTAATGAATATATAATTAAGTTTTTCAATCATGATGTTAATGTCTAACTTTTTTCCAGATATTGTGAGGGAGATTTTGAGTGCCTGGCCCGAGGTTTGTAAGTTGTGTGACTCGACAAACACCAGTCCCCTATATGCTGCCGCAGTCCAAGATCACTTGGATGTGGTAAATGCTATTTTGGATGTTGATGTCAGCTCCATGTTTATAGTTAGAAAAAATGGGAAAACTGCACTACATAACGCTGTTAGGTATGGCGTCAACCGTATTGTGAAAGCACTTATTGTCCGTGAACCAGGAATAGTTTGCATCAAAGATAAAAAAGGTCAAACTGCGCTACATATGGCTGTCAAAGGACAGAGTACATCAGTGGTGGAGGAGATATTACAAGCTGATCCTACTATATTGAACGAACGAGATAAGAAGGGTAATACCGCTCTTCACATGGCTACGCGGAAAGGCCGGTCACAGGTTAAACTCATTCTCTTGAACCATATATAGTTGTAGATACTTTTTAATAATATATTGATTTCAGTTTTATTGTAAACTTAAACAAAGTTGTCAGTCCGAGATGATGGAAAAATCCAAGACTTCCTGGAATGAATGATAGGAAGGAAGTGAAATTATTTATCAGATTGTTATGAAAATATAAAAGATGCTTGAACTTTTTTCTATAGGTACTTAACAGTTGATACACAACATTAATGTAAGTCTAATGTGATACAATAATTTCATGTTAAACGTCGTTGGTCTTCAATAATTTAACACAACAAATTGTATATCGTAACTAATGTAGATTCTTTCGATGAATTTCTCCTCGTACGTTCCACGAGTTCTCAATACTAGTTAATTACAACTGGAAGCATCATATCACTGGTCTTGGATTTTAAAGCATAGGCTGTGTAAATTTAAGCTATGGTTTATAAGCAATTATATATGCCCTAAACTATCCTCATTCCTTATTAGTTGAGGCTCATTTATATACATAATGGAACAAAATGAATGCTTGTGTCCTTTCATAATTTGCTTGTCTTTTGTTGCAATAAATTCTTCCTCTCATTTTGTATTTTTGTTGTCTTTACTGACAAATGGTTCTTTTGTCAGATAGTGAGCTATTTGCTAAGCTATGCAGCTGTGGATGTTAATGCCATCAATAAGCAACAAGAAACAGCCTTGGATTTGGCAGATAAACTGCCATATGGATCGTCAGCTTTAGAAATCCAAGAAGCACTTTCAGAATATGGTGCTAAATATGCAAGACATGTTGGTAAAGTAGATGAAGCCATGGAACTTAAAAGAACAGTGAGTGATATAAAGCATGAGGTGCAGTCACAGCTCATACAAAACGAAAAAACTCGCCGACGAGTTTCCGGTATAGCTAAGGAATTGAAAAAACTTCATAGAGAAGCTGTTCAAAACACCATTAACTCTCTCACAGTGGTTGCTGTCCTTTTCGCCTCAATAGCATTCTTGGCTATATTCAATTTGCCGGGTCAATATATTATGAAAGGATCACATATAGGAGAATCTAACATTGCGGATCATGTTGGATTTCAAATTTTCTGTCTCTTGAATTCGACGTCTCTTTTCATTTCTCTTGCAGTTGTTGTTGTTCAAATCACTTTGGTAGCTTGGGACACAAGGGCTCAAAAGCAGATCGTGTCTGTTGTTAACAAGCTAATGTGGGCTGCTTGTGCTTGCACGTGCGGCGCTTTTTTGGCAATCGCTTTTGAGGTTGTTGGAAAGAAAAAATGGATGGCTATTACCATAACTGGTTTAGGGATACCTATTCTAGTTGGGACTCTGGCAAGCATGTGCTACTTTGTTTTTCGACAACATTTTGGCATTTTCCAAAGTGATTCGCAGAGACGCATCAAGAGAGCAAGTGGAAGCAAATCCTTCTCATGGTCTTACTCTGCAAATATATCAGATATAGACGAATACACTTCAGACATTGAGAAGATCTATGCTTTGTAA
Protein sequence

>MS.gene020517.t1

MESKGLRFMTHQSIFTTVGSGDLDGLKKLLEKLNKEEDGDRSNGSSTSSSSMSVSDVMSLQNDHGETPLYIAAHNNLKEVFTFLIKLCDFEVVKIRSKSDMNAFHVAAKRGHLDIVREILSAWPEVCKLCDSTNTSPLYAAAVQDHLDVVNAILDVDVSSMFIVRKNGKTALHNAVRYGVNRIVKALIVREPGIVCIKDKKGQTALHMAVKGQSTSVVEEILQADPTILNERDKKGNTALHMATRKGRSQIVSYLLSYAAVDVNAINKQQETALDLADKLPYGSSALEIQEALSEYGAKYARHVGKVDEAMELKRTVSDIKHEVQSQLIQNEKTRRRVSGIAKELKKLHREAVQNTINSLTVVAVLFASIAFLAIFNLPGQYIMKGSHIGESNIADHVGFQIFCLLNSTSLFISLAVVVVQITLVAWDTRAQKQIVSVVNKLMWAACACTCGAFLAIAFEVVGKKKWMAITITGLGIPILVGTLASMCYFVFRQHFGIFQSDSQRRIKRASGSKSFSWSYSANISDIDEYTSDIEKIYAL