Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009718.t1 | XP_003615964.1 | 92.2 | 179 | 14 | 0 | 1 | 179 | 1 | 179 | 7.00E-92 | 346.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009718.t1 | Q8GWL2 | 46.1 | 178 | 91 | 2 | 3 | 179 | 1 | 174 | 5.1e-35 | 149.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009718.t1 | G7KFJ1 | 92.2 | 179 | 14 | 0 | 1 | 179 | 1 | 179 | 5.0e-92 | 346.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene87041 | MS.gene009718 | PPI |
| MS.gene009718 | MS.gene87762 | PPI |
| MS.gene42097 | MS.gene009718 | PPI |
| MS.gene009718 | MS.gene42096 | PPI |
| MS.gene42103 | MS.gene009718 | PPI |
| MS.gene009718 | MS.gene87038 | PPI |
| MS.gene42098 | MS.gene009718 | PPI |
| MS.gene87769 | MS.gene009718 | PPI |
| MS.gene87043 | MS.gene009718 | PPI |
| MS.gene87767 | MS.gene009718 | PPI |
| MS.gene87039 | MS.gene009718 | PPI |
| MS.gene42848 | MS.gene009718 | PPI |
| MS.gene42099 | MS.gene009718 | PPI |
| MS.gene42091 | MS.gene009718 | PPI |
| MS.gene42100 | MS.gene009718 | PPI |
| MS.gene009718 | MS.gene87768 | PPI |
| MS.gene87040 | MS.gene009718 | PPI |
| MS.gene87765 | MS.gene009718 | PPI |
| MS.gene009718 | MS.gene87046 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009718.t1 | MTR_5g074560 | 91.667 | 180 | 15 | 0 | 1 | 180 | 1 | 180 | 1.33e-123 | 347 |
| MS.gene009718.t1 | MTR_5g074550 | 73.604 | 197 | 37 | 4 | 3 | 185 | 1 | 196 | 2.76e-97 | 280 |
| MS.gene009718.t1 | MTR_7g072170 | 33.136 | 169 | 103 | 5 | 20 | 180 | 33 | 199 | 1.91e-21 | 87.8 |
| MS.gene009718.t1 | MTR_7g072120 | 32.544 | 169 | 104 | 5 | 20 | 180 | 33 | 199 | 6.19e-21 | 86.3 |
| MS.gene009718.t1 | MTR_7g072270 | 33.136 | 169 | 102 | 6 | 20 | 180 | 32 | 197 | 1.52e-20 | 85.1 |
| MS.gene009718.t1 | MTR_7g072140 | 31.361 | 169 | 106 | 5 | 20 | 180 | 33 | 199 | 4.04e-19 | 81.6 |
| MS.gene009718.t1 | MTR_7g072270 | 34.074 | 135 | 79 | 5 | 20 | 146 | 32 | 164 | 1.88e-15 | 70.9 |
| MS.gene009718.t1 | MTR_7g072250 | 32.026 | 153 | 88 | 6 | 37 | 180 | 83 | 228 | 1.21e-13 | 67.4 |
| MS.gene009718.t1 | MTR_7g071710 | 31.731 | 104 | 67 | 3 | 79 | 180 | 5 | 106 | 8.90e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009718.t1 | AT2G30270 | 45.556 | 180 | 93 | 2 | 3 | 181 | 1 | 176 | 1.88e-39 | 133 |
| MS.gene009718.t1 | AT5G01750 | 26.316 | 171 | 114 | 6 | 20 | 181 | 37 | 204 | 1.91e-14 | 69.3 |
| MS.gene009718.t1 | AT3G11740 | 27.647 | 170 | 112 | 6 | 20 | 180 | 13 | 180 | 1.26e-12 | 63.9 |
Find 49 sgRNAs with CRISPR-Local
Find 139 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAACTCCGGCTTGTTCTT+TGG | 0.239907 | 5.3:+58991662 | None:intergenic |
| TATCCCTACTGGGGTATCTT+TGG | 0.280786 | 5.3:+58989805 | None:intergenic |
| ATTAGAATCAAGCAAGAGTT+TGG | 0.283818 | 5.3:+58991569 | None:intergenic |
| GAGAAATGGTGATGAGAATA+AGG | 0.306353 | 5.3:-58990659 | MS.gene009718:CDS |
| CACCTTGAAGACCATGTTCC+CGG | 0.334055 | 5.3:+58991611 | None:intergenic |
| GTTTGCGACTTGAAAGTTAT+AGG | 0.363711 | 5.3:-58990547 | MS.gene009718:CDS |
| TTGGAACAGAAGAGATCAAT+TGG | 0.367092 | 5.3:+58991681 | None:intergenic |
| TTTCGCCTGACAATCTTTCC+TGG | 0.371331 | 5.3:-58989780 | MS.gene009718:CDS |
| CAGGCGAAATTTATCCCTAC+TGG | 0.379345 | 5.3:+58989794 | None:intergenic |
| CATTTCTAAAGACGGTGATT+TGG | 0.384432 | 5.3:-58990500 | MS.gene009718:CDS |
| AAATGGAAACTTCAGAAGAT+TGG | 0.396214 | 5.3:-58991734 | MS.gene009718:CDS |
| TTTGGATAAGGTTGTACATC+AGG | 0.420788 | 5.3:+58989823 | None:intergenic |
| TACTGGGGTATCTTTGGATA+AGG | 0.422824 | 5.3:+58989811 | None:intergenic |
| AATGGAAACTTCAGAAGATT+GGG | 0.430383 | 5.3:-58991733 | MS.gene009718:CDS |
| ATCAAGCAAGAGTTTGGGAT+TGG | 0.432062 | 5.3:+58991575 | None:intergenic |
| TTAGAATCAAGCAAGAGTTT+GGG | 0.435302 | 5.3:+58991570 | None:intergenic |
| TACAGCTGCAATTCAAGAAA+AGG | 0.449218 | 5.3:-58989636 | MS.gene009718:intron |
| CTAGAGTTCACCGATGCATC+CGG | 0.449478 | 5.3:-58991630 | MS.gene009718:CDS |
| TGGAAATGTTACAAGAGAAA+TGG | 0.454502 | 5.3:-58990673 | MS.gene009718:CDS |
| ATCCGGGAACATGGTCTTCA+AGG | 0.458121 | 5.3:-58991613 | MS.gene009718:CDS |
| CGGATGCATCGGTGAACTCT+AGG | 0.477529 | 5.3:+58991631 | None:intergenic |
| TTCGCCTGACAATCTTTCCT+GGG | 0.479694 | 5.3:-58989779 | MS.gene009718:CDS |
| TTCTAAAGACGGTGATTTGG+TGG | 0.482022 | 5.3:-58990497 | MS.gene009718:CDS |
| TCAGAAGATTGGGAGTATAC+AGG | 0.489528 | 5.3:-58991723 | MS.gene009718:CDS |
| TCAAGCAAGAGTTTGGGATT+GGG | 0.489749 | 5.3:+58991576 | None:intergenic |
| CATAGATCATGCTGTTATTG+TGG | 0.501519 | 5.3:-58989754 | MS.gene009718:CDS |
| TGATCCCAGGAAAGATTGTC+AGG | 0.502195 | 5.3:+58989775 | None:intergenic |
| ACTAACGTGACGACGGTGGA+TGG | 0.504748 | 5.3:+58991530 | None:intergenic |
| GACCATGTTCCCGGATGCAT+CGG | 0.519523 | 5.3:+58991620 | None:intergenic |
| CACCGATGCATCCGGGAACA+TGG | 0.527012 | 5.3:-58991622 | MS.gene009718:CDS |
| AGGCGAAATTTATCCCTACT+GGG | 0.539246 | 5.3:+58989795 | None:intergenic |
| TAGGATTCCACGTGGAACTC+CGG | 0.543850 | 5.3:+58991650 | None:intergenic |
| AGCAAGAGTTTGGGATTGGG+TGG | 0.555142 | 5.3:+58991579 | None:intergenic |
| TGGAACAGAAGAGATCAATT+GGG | 0.558088 | 5.3:+58991682 | None:intergenic |
| ACAGCATGATCTATGATCCC+AGG | 0.562637 | 5.3:+58989762 | None:intergenic |
| AGACGGTGATTTGGTGGCAC+AGG | 0.565780 | 5.3:-58990491 | MS.gene009718:intron |
| TTCTGTTCCAAAGAACAAGC+CGG | 0.575763 | 5.3:-58991669 | MS.gene009718:CDS |
| TAGAGTTCACCGATGCATCC+GGG | 0.578292 | 5.3:-58991629 | MS.gene009718:CDS |
| CGACGGTGGATGGAGAATAG+AGG | 0.586292 | 5.3:+58991540 | None:intergenic |
| AGCTTGTGTTAAAAGTAAAG+AGG | 0.588306 | 5.3:-58990636 | MS.gene009718:CDS |
| ATGCTGCATGATCTCATGAA+AGG | 0.599728 | 5.3:+58990520 | None:intergenic |
| AGAGACTAACGTGACGACGG+TGG | 0.605276 | 5.3:+58991526 | None:intergenic |
| TTATCCAAAGATACCCCAGT+AGG | 0.617345 | 5.3:-58989809 | MS.gene009718:CDS |
| TATCCAAAGATACCCCAGTA+GGG | 0.622199 | 5.3:-58989808 | MS.gene009718:CDS |
| TCATGCAGCATTTCTAAAGA+CGG | 0.624828 | 5.3:-58990508 | MS.gene009718:CDS |
| CAGAGAGACTAACGTGACGA+CGG | 0.675593 | 5.3:+58991523 | None:intergenic |
| GAACAAGCCGGAGTTCCACG+TGG | 0.704987 | 5.3:-58991657 | MS.gene009718:CDS |
| GGCGAAATTTATCCCTACTG+GGG | 0.710654 | 5.3:+58989796 | None:intergenic |
| GTGAACTCTAGGATTCCACG+TGG | 0.788560 | 5.3:+58991642 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACTGAAAATATATCAAT+TGG | - | chr5.3:58991229-58991248 | MS.gene009718:intron | 15.0% |
| !! | AAGTAACAAATACATATAAT+CGG | + | chr5.3:58991706-58991725 | None:intergenic | 15.0% |
| !! | ATAAAAAAAGAAACAAATTG+AGG | - | chr5.3:58990622-58990641 | MS.gene009718:CDS | 15.0% |
| !!! | ATTAATTGATTGTTTTGATT+TGG | - | chr5.3:58990978-58990997 | MS.gene009718:intron | 15.0% |
| !!! | TGAAATATGTTGTTTTATTT+TGG | - | chr5.3:58990653-58990672 | MS.gene009718:CDS | 15.0% |
| !!! | TTGTTTGTAATATTTTTGAA+AGG | - | chr5.3:58991632-58991651 | MS.gene009718:CDS | 15.0% |
| !!! | TTTTATAAGCTAATTACTAT+AGG | - | chr5.3:58990110-58990129 | MS.gene009718:intron | 15.0% |
| !!! | AATCAATTTTTGTGATTAGT+TGG | + | chr5.3:58991492-58991511 | None:intergenic | 20.0% |
| !!! | GATCACTTTATTGTATTTTA+GGG | - | chr5.3:58990222-58990241 | MS.gene009718:intron | 20.0% |
| !!! | TAAATATTTTTTCTAGGAGA+TGG | + | chr5.3:58990603-58990622 | None:intergenic | 20.0% |
| !!! | TGATCACTTTATTGTATTTT+AGG | - | chr5.3:58990221-58990240 | MS.gene009718:intron | 20.0% |
| ! | AAAAAGAGAGGAATCAAATT+TGG | - | chr5.3:58991368-58991387 | MS.gene009718:intron | 25.0% |
| ! | AAAAGAGAGGAATCAAATTT+GGG | - | chr5.3:58991369-58991388 | MS.gene009718:intron | 25.0% |
| ! | AATTGATGCTATCAGTTTAA+AGG | + | chr5.3:58991308-58991327 | None:intergenic | 25.0% |
| ! | ATTGATGCTATCAGTTTAAA+GGG | + | chr5.3:58991307-58991326 | None:intergenic | 25.0% |
| ! | TAAATCACATGGAAAAATGT+TGG | + | chr5.3:58989991-58990010 | None:intergenic | 25.0% |
| ! | TGATTACAATTATGCATAGA+GGG | - | chr5.3:58991425-58991444 | MS.gene009718:intron | 25.0% |
| !! | CAAGGAAATTTAATGTTTTG+GGG | + | chr5.3:58991111-58991130 | None:intergenic | 25.0% |
| !! | GCAAGGAAATTTAATGTTTT+GGG | + | chr5.3:58991112-58991131 | None:intergenic | 25.0% |
| !! | TCAAAGTATTTGATTAAGCA+AGG | - | chr5.3:58990549-58990568 | MS.gene009718:CDS | 25.0% |
| !! | TGCAAGGAAATTTAATGTTT+TGG | + | chr5.3:58991113-58991132 | None:intergenic | 25.0% |
| !!! | AAGGAAATTTAATGTTTTGG+GGG | + | chr5.3:58991110-58991129 | None:intergenic | 25.0% |
| !!! | CACAATTTCACATTTTTCAA+CGG | - | chr5.3:58989933-58989952 | MS.gene009718:intron | 25.0% |
| !!! | CTTTTGATAGTGTTTAAAGA+CGG | - | chr5.3:58990024-58990043 | MS.gene009718:intron | 25.0% |
| !!! | GTCATTTTTTAGATTACTCT+CGG | - | chr5.3:58990085-58990104 | MS.gene009718:intron | 25.0% |
| !!! | TTGTTTTATTTTGGTAGAGT+GGG | - | chr5.3:58990662-58990681 | MS.gene009718:CDS | 25.0% |
| !!! | TTTTGATAGTGTTTAAAGAC+GGG | - | chr5.3:58990025-58990044 | MS.gene009718:intron | 25.0% |
| !!! | TTTTTCGTCAATTAGTCTAT+TGG | - | chr5.3:58991054-58991073 | MS.gene009718:intron | 25.0% |
| AAAGAGAGGAATCAAATTTG+GGG | - | chr5.3:58991370-58991389 | MS.gene009718:intron | 30.0% | |
| AAATGGAAACTTCAGAAGAT+TGG | - | chr5.3:58989627-58989646 | MS.gene009718:CDS | 30.0% | |
| AATGGAAACTTCAGAAGATT+GGG | - | chr5.3:58989628-58989647 | MS.gene009718:CDS | 30.0% | |
| AGCTTGTGTTAAAAGTAAAG+AGG | - | chr5.3:58990725-58990744 | MS.gene009718:intron | 30.0% | |
| AGTTGAAACATGAAAAAGAG+AGG | - | chr5.3:58991356-58991375 | MS.gene009718:intron | 30.0% | |
| ATTAGAATCAAGCAAGAGTT+TGG | + | chr5.3:58989795-58989814 | None:intergenic | 30.0% | |
| CGTTGAAAAATGTGAAATTG+TGG | + | chr5.3:58989935-58989954 | None:intergenic | 30.0% | |
| CTGATTACAATTATGCATAG+AGG | - | chr5.3:58991424-58991443 | MS.gene009718:intron | 30.0% | |
| GACATCTGTGTATAATGAAT+AGG | - | chr5.3:58991180-58991199 | MS.gene009718:intron | 30.0% | |
| GATGATAGATATAGCAATAC+AGG | - | chr5.3:58990284-58990303 | MS.gene009718:intron | 30.0% | |
| TGGAAATGTTACAAGAGAAA+TGG | - | chr5.3:58990688-58990707 | MS.gene009718:intron | 30.0% | |
| TGTATAATGAATAGGCAACA+AGG | - | chr5.3:58991188-58991207 | MS.gene009718:intron | 30.0% | |
| TTAGAATCAAGCAAGAGTTT+GGG | + | chr5.3:58989794-58989813 | None:intergenic | 30.0% | |
| TTGAATGACACATACAAACA+TGG | + | chr5.3:58990165-58990184 | None:intergenic | 30.0% | |
| ! | TGCATTGCAATCATATGTTT+TGG | - | chr5.3:58990373-58990392 | MS.gene009718:intron | 30.0% |
| ! | TTTGTATGTGTCATTCAACA+AGG | - | chr5.3:58990167-58990186 | MS.gene009718:intron | 30.0% |
| !!! | ATTTTCAGTTTTTAGCTGCA+AGG | + | chr5.3:58991129-58991148 | None:intergenic | 30.0% |
| !!! | GTTGTTTTATTTTGGTAGAG+TGG | - | chr5.3:58990661-58990680 | MS.gene009718:CDS | 30.0% |
| ACATGTAATTACATCCGTCA+TGG | + | chr5.3:58990059-58990078 | None:intergenic | 35.0% | |
| AGATGTCAGCTACTCATATA+TGG | + | chr5.3:58991167-58991186 | None:intergenic | 35.0% | |
| CATAGATCATGCTGTTATTG+TGG | - | chr5.3:58991607-58991626 | MS.gene009718:CDS | 35.0% | |
| GTTTGCGACTTGAAAGTTAT+AGG | - | chr5.3:58990814-58990833 | MS.gene009718:intron | 35.0% | |
| TACAGCTGCAATTCAAGAAA+AGG | - | chr5.3:58991725-58991744 | MS.gene009718:CDS | 35.0% | |
| TATCAGTTTAAAGGGTAGTC+TGG | + | chr5.3:58991299-58991318 | None:intergenic | 35.0% | |
| TCACTGCTACATAAATCACA+TGG | + | chr5.3:58990002-58990021 | None:intergenic | 35.0% | |
| TCTATAGATTAGGTATGTCC+TGG | + | chr5.3:58990441-58990460 | None:intergenic | 35.0% | |
| TGGAACAGAAGAGATCAATT+GGG | + | chr5.3:58989682-58989701 | None:intergenic | 35.0% | |
| TTGGAACAGAAGAGATCAAT+TGG | + | chr5.3:58989683-58989702 | None:intergenic | 35.0% | |
| TTTCCAAACTCTGTGTATGT+GGG | - | chr5.3:58991261-58991280 | MS.gene009718:intron | 35.0% | |
| TTTGGATAAGGTTGTACATC+AGG | + | chr5.3:58991541-58991560 | None:intergenic | 35.0% | |
| ! | AATTAGTCTATTGGCCAGTA+GGG | - | chr5.3:58991063-58991082 | MS.gene009718:intron | 35.0% |
| ! | ATAGTGTTTAAAGACGGGTT+TGG | - | chr5.3:58990030-58990049 | MS.gene009718:intron | 35.0% |
| ! | ATGTGTCATTCAACAAGGAT+CGG | - | chr5.3:58990172-58990191 | MS.gene009718:intron | 35.0% |
| ! | CATTTCTAAAGACGGTGATT+TGG | - | chr5.3:58990861-58990880 | MS.gene009718:intron | 35.0% |
| ! | GAGAAATGGTGATGAGAATA+AGG | - | chr5.3:58990702-58990721 | MS.gene009718:intron | 35.0% |
| ! | TCATGCAGCATTTCTAAAGA+CGG | - | chr5.3:58990853-58990872 | MS.gene009718:intron | 35.0% |
| !!! | AAGTTAGACGTGTTTTTTGC+TGG | - | chr5.3:58990772-58990791 | MS.gene009718:intron | 35.0% |
| !!! | GGAACATGTTTTAGTTGCAA+TGG | - | chr5.3:58991009-58991028 | MS.gene009718:intron | 35.0% |
| !!! | TGTTTTGATTTGGTTAGACG+TGG | - | chr5.3:58990988-58991007 | MS.gene009718:intron | 35.0% |
| !!! | TTTTGGTGTTTGTGTTGTGT+CGG | - | chr5.3:58990390-58990409 | MS.gene009718:intron | 35.0% |
| AGGCGAAATTTATCCCTACT+GGG | + | chr5.3:58991569-58991588 | None:intergenic | 40.0% | |
| ATGCTGCATGATCTCATGAA+AGG | + | chr5.3:58990844-58990863 | None:intergenic | 40.0% | |
| CATACACAGAGTTTGGAAAG+AGG | + | chr5.3:58991260-58991279 | None:intergenic | 40.0% | |
| CATCTACTCAACCGAATCAA+CGG | + | chr5.3:58989895-58989914 | None:intergenic | 40.0% | |
| CTTTCCAAACTCTGTGTATG+TGG | - | chr5.3:58991260-58991279 | MS.gene009718:intron | 40.0% | |
| GCACAGGTACTCTATAGATT+AGG | + | chr5.3:58990451-58990470 | None:intergenic | 40.0% | |
| TATCCAAAGATACCCCAGTA+GGG | - | chr5.3:58991553-58991572 | MS.gene009718:CDS | 40.0% | |
| TTATCCAAAGATACCCCAGT+AGG | - | chr5.3:58991552-58991571 | MS.gene009718:CDS | 40.0% | |
| TTCTGTTCCAAAGAACAAGC+CGG | - | chr5.3:58989692-58989711 | MS.gene009718:intron | 40.0% | |
| ! | ATCAAGCAAGAGTTTGGGAT+TGG | + | chr5.3:58989789-58989808 | None:intergenic | 40.0% |
| ! | CAATTAGTCTATTGGCCAGT+AGG | - | chr5.3:58991062-58991081 | MS.gene009718:intron | 40.0% |
| ! | TACTGGGGTATCTTTGGATA+AGG | + | chr5.3:58991553-58991572 | None:intergenic | 40.0% |
| ! | TCAAGCAAGAGTTTGGGATT+GGG | + | chr5.3:58989788-58989807 | None:intergenic | 40.0% |
| ! | TCAGAAGATTGGGAGTATAC+AGG | - | chr5.3:58989638-58989657 | MS.gene009718:intron | 40.0% |
| ! | TGTGTCATTCAACAAGGATC+GGG | - | chr5.3:58990173-58990192 | MS.gene009718:intron | 40.0% |
| ! | TTCTAAAGACGGTGATTTGG+TGG | - | chr5.3:58990864-58990883 | MS.gene009718:intron | 40.0% |
| !! | TTGATTAAGCAAGGTGTCGT+AGG | - | chr5.3:58990558-58990577 | MS.gene009718:CDS | 40.0% |
| !!! | TATTTTGGTAGAGTGGGACT+TGG | - | chr5.3:58990668-58990687 | MS.gene009718:CDS | 40.0% |
| ACAAGGATTGGGTGACTTTG+TGG | + | chr5.3:58990520-58990539 | None:intergenic | 45.0% | |
| ACAGCATGATCTATGATCCC+AGG | + | chr5.3:58991602-58991621 | None:intergenic | 45.0% | |
| ACGTATTTGTGACCGTGTGT+AGG | + | chr5.3:58990320-58990339 | None:intergenic | 45.0% | |
| AGTGATATGTATCCGACTCC+AGG | - | chr5.3:58990420-58990439 | MS.gene009718:intron | 45.0% | |
| CAGGCGAAATTTATCCCTAC+TGG | + | chr5.3:58991570-58991589 | None:intergenic | 45.0% | |
| GATTAGGTATGTCCTGGAGT+CGG | + | chr5.3:58990435-58990454 | None:intergenic | 45.0% | |
| GCTACTCATATATGGCTGCA+AGG | + | chr5.3:58991159-58991178 | None:intergenic | 45.0% | |
| GCTTCGTAGACAATGAGAGA+TGG | - | chr5.3:58990469-58990488 | MS.gene009718:intron | 45.0% | |
| GGCGAAATTTATCCCTACTG+GGG | + | chr5.3:58991568-58991587 | None:intergenic | 45.0% | |
| TCAAACCTGCAATTCCCTAC+TGG | + | chr5.3:58991080-58991099 | None:intergenic | 45.0% | |
| TCTCATTGTCTACGAAGCAC+AGG | + | chr5.3:58990467-58990486 | None:intergenic | 45.0% | |
| TGATCCCAGGAAAGATTGTC+AGG | + | chr5.3:58991589-58991608 | None:intergenic | 45.0% | |
| TTCGCCTGACAATCTTTCCT+GGG | - | chr5.3:58991582-58991601 | MS.gene009718:CDS | 45.0% | |
| TTTCGCCTGACAATCTTTCC+TGG | - | chr5.3:58991581-58991600 | MS.gene009718:CDS | 45.0% | |
| ! | TATCCCTACTGGGGTATCTT+TGG | + | chr5.3:58991559-58991578 | None:intergenic | 45.0% |
| ! | TGTTTGTGTTGTGTCGGTGA+CGG | - | chr5.3:58990396-58990415 | MS.gene009718:intron | 45.0% |
| !!! | TTTTTATAAATATTTTTTCT+AGG | + | chr5.3:58990609-58990628 | None:intergenic | 5.0% |
| AACCGAATCAACGGTGTGGT+GGG | + | chr5.3:58989886-58989905 | None:intergenic | 50.0% | |
| AAGTCACCCAATCCTTGTCG+CGG | - | chr5.3:58990522-58990541 | MS.gene009718:CDS | 50.0% | |
| ACTCAACCGAATCAACGGTG+TGG | + | chr5.3:58989890-58989909 | None:intergenic | 50.0% | |
| AGGATCGGGTGACTTTAACG+AGG | - | chr5.3:58990187-58990206 | MS.gene009718:intron | 50.0% | |
| AGGATTGGGTGACTTTGTGG+AGG | + | chr5.3:58990517-58990536 | None:intergenic | 50.0% | |
| ATCCGGGAACATGGTCTTCA+AGG | - | chr5.3:58989748-58989767 | MS.gene009718:intron | 50.0% | |
| ATTGGCCAGTAGGGAATTGC+AGG | - | chr5.3:58991072-58991091 | MS.gene009718:intron | 50.0% | |
| CACCTTGAAGACCATGTTCC+CGG | + | chr5.3:58989753-58989772 | None:intergenic | 50.0% | |
| CAGAGAGACTAACGTGACGA+CGG | + | chr5.3:58989841-58989860 | None:intergenic | 50.0% | |
| CTAGAGTTCACCGATGCATC+CGG | - | chr5.3:58989731-58989750 | MS.gene009718:intron | 50.0% | |
| GATTGGGTGACTTTGTGGAG+GGG | + | chr5.3:58990515-58990534 | None:intergenic | 50.0% | |
| GCTCCCACATACACAGAGTT+TGG | + | chr5.3:58991267-58991286 | None:intergenic | 50.0% | |
| GGAGCTATGAAGCCTACACA+CGG | - | chr5.3:58990305-58990324 | MS.gene009718:intron | 50.0% | |
| GGATCGGGTGACTTTAACGA+GGG | - | chr5.3:58990188-58990207 | MS.gene009718:intron | 50.0% | |
| GGATTGGGTGACTTTGTGGA+GGG | + | chr5.3:58990516-58990535 | None:intergenic | 50.0% | |
| TAGAGTTCACCGATGCATCC+GGG | - | chr5.3:58989732-58989751 | MS.gene009718:intron | 50.0% | |
| TAGGATTCCACGTGGAACTC+CGG | + | chr5.3:58989714-58989733 | None:intergenic | 50.0% | |
| ! | AGCAAGAGTTTGGGATTGGG+TGG | + | chr5.3:58989785-58989804 | None:intergenic | 50.0% |
| ! | TGGAACTCCGGCTTGTTCTT+TGG | + | chr5.3:58989702-58989721 | None:intergenic | 50.0% |
| !! | AGCAAGGTGTCGTAGGTGTA+AGG | - | chr5.3:58990565-58990584 | MS.gene009718:CDS | 50.0% |
| !! | GGTGTGGTGGGTGTAAAAGA+AGG | + | chr5.3:58989874-58989893 | None:intergenic | 50.0% |
| !! | GTGAACTCTAGGATTCCACG+TGG | + | chr5.3:58989722-58989741 | None:intergenic | 50.0% |
| !! | TACTTTGAAGCACCGCGACA+AGG | + | chr5.3:58990537-58990556 | None:intergenic | 50.0% |
| ACTAACGTGACGACGGTGGA+TGG | + | chr5.3:58989834-58989853 | None:intergenic | 55.0% | |
| AGAGACTAACGTGACGACGG+TGG | + | chr5.3:58989838-58989857 | None:intergenic | 55.0% | |
| CAACCGAATCAACGGTGTGG+TGG | + | chr5.3:58989887-58989906 | None:intergenic | 55.0% | |
| CGACGGTGGATGGAGAATAG+AGG | + | chr5.3:58989824-58989843 | None:intergenic | 55.0% | |
| GACCATGTTCCCGGATGCAT+CGG | + | chr5.3:58989744-58989763 | None:intergenic | 55.0% | |
| ! | CACCCACCACACCGTTGATT+CGG | - | chr5.3:58989881-58989900 | MS.gene009718:intron | 55.0% |
| ! | CGGATGCATCGGTGAACTCT+AGG | + | chr5.3:58989733-58989752 | None:intergenic | 55.0% |
| !! | AGACGGTGATTTGGTGGCAC+AGG | - | chr5.3:58990870-58990889 | MS.gene009718:intron | 55.0% |
| !! | GAAGCACCGCGACAAGGATT+GGG | + | chr5.3:58990531-58990550 | None:intergenic | 55.0% |
| !! | GACGGGTTTGGTGTCCATGA+CGG | - | chr5.3:58990042-58990061 | MS.gene009718:intron | 55.0% |
| !! | TGAAGCACCGCGACAAGGAT+TGG | + | chr5.3:58990532-58990551 | None:intergenic | 55.0% |
| CACCGATGCATCCGGGAACA+TGG | - | chr5.3:58989739-58989758 | MS.gene009718:intron | 60.0% | |
| GAACAAGCCGGAGTTCCACG+TGG | - | chr5.3:58989704-58989723 | MS.gene009718:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 58989623 | 58991760 | 58989623 | ID=MS.gene009718 |
| chr5.3 | mRNA | 58989623 | 58991760 | 58989623 | ID=MS.gene009718.t1;Parent=MS.gene009718 |
| chr5.3 | exon | 58991536 | 58991760 | 58991536 | ID=MS.gene009718.t1.exon1;Parent=MS.gene009718.t1 |
| chr5.3 | CDS | 58991536 | 58991760 | 58991536 | ID=cds.MS.gene009718.t1;Parent=MS.gene009718.t1 |
| chr5.3 | exon | 58990492 | 58990704 | 58990492 | ID=MS.gene009718.t1.exon2;Parent=MS.gene009718.t1 |
| chr5.3 | CDS | 58990492 | 58990704 | 58990492 | ID=cds.MS.gene009718.t1;Parent=MS.gene009718.t1 |
| chr5.3 | exon | 58989750 | 58989850 | 58989750 | ID=MS.gene009718.t1.exon3;Parent=MS.gene009718.t1 |
| chr5.3 | CDS | 58989750 | 58989850 | 58989750 | ID=cds.MS.gene009718.t1;Parent=MS.gene009718.t1 |
| chr5.3 | exon | 58989623 | 58989653 | 58989623 | ID=MS.gene009718.t1.exon4;Parent=MS.gene009718.t1 |
| chr5.3 | CDS | 58989623 | 58989653 | 58989623 | ID=cds.MS.gene009718.t1;Parent=MS.gene009718.t1 |
| Gene Sequence |
| Protein sequence |
