Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87762.t1 | XP_003623546.1 | 96.7 | 212 | 7 | 0 | 1 | 212 | 1 | 212 | 4.70E-89 | 337.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87762.t1 | Q9LZX1 | 49.3 | 205 | 102 | 2 | 2 | 205 | 8 | 211 | 5.2e-52 | 205.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87762.t1 | G7KW28 | 96.7 | 212 | 7 | 0 | 1 | 212 | 1 | 212 | 3.4e-89 | 337.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene99705 | MS.gene87762 | PPI |
| MS.gene87762 | MS.gene81036 | PPI |
| MS.gene42096 | MS.gene87762 | PPI |
| MS.gene87768 | MS.gene87762 | PPI |
| MS.gene87041 | MS.gene87762 | PPI |
| MS.gene42097 | MS.gene87762 | PPI |
| MS.gene009718 | MS.gene87762 | PPI |
| MS.gene87769 | MS.gene87762 | PPI |
| MS.gene99704 | MS.gene87762 | PPI |
| MS.gene26305 | MS.gene87762 | PPI |
| MS.gene009719 | MS.gene87762 | PPI |
| MS.gene42848 | MS.gene87762 | PPI |
| MS.gene42103 | MS.gene87762 | PPI |
| MS.gene87038 | MS.gene87762 | PPI |
| MS.gene42098 | MS.gene87762 | PPI |
| MS.gene87043 | MS.gene87762 | PPI |
| MS.gene87765 | MS.gene87762 | PPI |
| MS.gene051028 | MS.gene87762 | PPI |
| MS.gene87767 | MS.gene87762 | PPI |
| MS.gene87039 | MS.gene87762 | PPI |
| MS.gene87046 | MS.gene87762 | PPI |
| MS.gene87762 | MS.gene91238 | PPI |
| MS.gene42099 | MS.gene87762 | PPI |
| MS.gene42091 | MS.gene87762 | PPI |
| MS.gene91237 | MS.gene87762 | PPI |
| MS.gene87762 | MS.gene25045 | PPI |
| MS.gene42100 | MS.gene87762 | PPI |
| MS.gene87762 | MS.gene87046 | PPI |
| MS.gene87040 | MS.gene87762 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87762.t1 | MTR_7g072270 | 96.698 | 212 | 7 | 0 | 1 | 212 | 1 | 212 | 1.55e-156 | 432 |
| MS.gene87762.t1 | MTR_7g072120 | 83.491 | 212 | 33 | 2 | 1 | 210 | 1 | 212 | 3.74e-131 | 367 |
| MS.gene87762.t1 | MTR_7g072170 | 82.243 | 214 | 36 | 2 | 1 | 212 | 1 | 214 | 2.47e-130 | 366 |
| MS.gene87762.t1 | MTR_7g072140 | 81.132 | 212 | 38 | 2 | 1 | 210 | 1 | 212 | 4.59e-126 | 355 |
| MS.gene87762.t1 | MTR_7g072250 | 78.027 | 223 | 34 | 3 | 1 | 212 | 25 | 243 | 1.47e-120 | 342 |
| MS.gene87762.t1 | MTR_7g072270 | 95.758 | 165 | 7 | 0 | 1 | 165 | 1 | 165 | 1.10e-119 | 337 |
| MS.gene87762.t1 | MTR_4g029430 | 58.421 | 190 | 74 | 2 | 19 | 207 | 12 | 197 | 9.74e-80 | 237 |
| MS.gene87762.t1 | MTR_7g071710 | 81.034 | 116 | 22 | 0 | 92 | 207 | 1 | 116 | 8.10e-70 | 209 |
| MS.gene87762.t1 | MTR_1g014180 | 55.556 | 189 | 74 | 5 | 18 | 201 | 1 | 184 | 5.54e-65 | 199 |
| MS.gene87762.t1 | MTR_1g014150 | 47.368 | 190 | 91 | 5 | 15 | 201 | 5 | 188 | 3.02e-51 | 164 |
| MS.gene87762.t1 | MTR_1g014160 | 42.553 | 188 | 83 | 6 | 32 | 201 | 59 | 239 | 5.08e-34 | 122 |
| MS.gene87762.t1 | MTR_2g103840 | 32.738 | 168 | 105 | 5 | 45 | 208 | 42 | 205 | 2.42e-25 | 99.0 |
| MS.gene87762.t1 | MTR_5g074550 | 33.889 | 180 | 104 | 6 | 32 | 201 | 17 | 191 | 5.71e-24 | 94.4 |
| MS.gene87762.t1 | MTR_4g010180 | 27.895 | 190 | 130 | 6 | 22 | 207 | 7 | 193 | 6.62e-23 | 92.0 |
| MS.gene87762.t1 | MTR_2g103850 | 28.079 | 203 | 137 | 6 | 10 | 207 | 7 | 205 | 4.34e-20 | 85.1 |
| MS.gene87762.t1 | MTR_5g074560 | 30.636 | 173 | 109 | 6 | 32 | 201 | 20 | 184 | 3.90e-18 | 79.0 |
| MS.gene87762.t1 | MTR_8g099000 | 28.421 | 190 | 113 | 9 | 35 | 204 | 45 | 231 | 2.85e-15 | 72.4 |
| MS.gene87762.t1 | MTR_8g023060 | 26.667 | 165 | 116 | 4 | 38 | 199 | 28 | 190 | 5.05e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87762.t1 | AT5G01750 | 55.981 | 209 | 90 | 2 | 2 | 209 | 8 | 215 | 8.19e-93 | 271 |
| MS.gene87762.t1 | AT3G11740 | 61.828 | 186 | 69 | 2 | 22 | 205 | 3 | 188 | 4.77e-85 | 250 |
| MS.gene87762.t1 | AT2G14560 | 51.064 | 188 | 91 | 1 | 19 | 205 | 4 | 191 | 6.74e-71 | 215 |
| MS.gene87762.t1 | AT1G33840 | 50.000 | 204 | 100 | 2 | 3 | 205 | 9 | 211 | 2.26e-70 | 214 |
| MS.gene87762.t1 | AT5G01750 | 54.819 | 166 | 73 | 2 | 2 | 166 | 8 | 172 | 8.46e-70 | 211 |
| MS.gene87762.t1 | AT2G14560 | 51.064 | 188 | 91 | 1 | 19 | 205 | 64 | 251 | 1.06e-69 | 214 |
| MS.gene87762.t1 | AT2G14560 | 48.667 | 150 | 76 | 1 | 19 | 167 | 4 | 153 | 7.26e-55 | 173 |
| MS.gene87762.t1 | AT2G14560 | 48.667 | 150 | 76 | 1 | 19 | 167 | 64 | 213 | 1.33e-53 | 172 |
| MS.gene87762.t1 | AT1G33840 | 46.988 | 166 | 86 | 2 | 3 | 167 | 9 | 173 | 2.64e-52 | 167 |
| MS.gene87762.t1 | AT3G16900 | 40.909 | 198 | 93 | 5 | 9 | 205 | 6 | 180 | 1.49e-49 | 160 |
| MS.gene87762.t1 | AT3G56180 | 35.052 | 194 | 116 | 4 | 21 | 210 | 17 | 204 | 1.32e-36 | 127 |
| MS.gene87762.t1 | AT3G56180 | 34.536 | 194 | 115 | 5 | 21 | 210 | 17 | 202 | 2.02e-34 | 122 |
| MS.gene87762.t1 | AT3G10986 | 33.503 | 197 | 120 | 5 | 21 | 210 | 3 | 195 | 2.80e-32 | 116 |
| MS.gene87762.t1 | AT3G15810 | 30.303 | 165 | 109 | 3 | 45 | 207 | 44 | 204 | 3.90e-25 | 98.2 |
| MS.gene87762.t1 | AT1G80120 | 33.333 | 168 | 103 | 4 | 45 | 207 | 30 | 193 | 1.02e-19 | 83.6 |
| MS.gene87762.t1 | AT2G38640 | 29.534 | 193 | 126 | 6 | 16 | 204 | 6 | 192 | 1.35e-17 | 77.8 |
| MS.gene87762.t1 | AT2G30270 | 28.889 | 180 | 113 | 7 | 25 | 201 | 12 | 179 | 1.77e-15 | 72.0 |
| MS.gene87762.t1 | AT2G05910 | 23.737 | 198 | 129 | 8 | 21 | 208 | 3 | 188 | 5.73e-12 | 62.4 |
| MS.gene87762.t1 | AT5G41590 | 23.394 | 218 | 151 | 6 | 3 | 204 | 2 | 219 | 8.07e-12 | 62.8 |
| MS.gene87762.t1 | AT5G20640 | 25.824 | 182 | 118 | 6 | 42 | 208 | 33 | 212 | 1.55e-11 | 61.6 |
Find 54 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGGTCTTAAATTGCATT+AGG | 0.261327 | 7.1:+29869085 | None:intergenic |
| GGAACTCGCGGTGGTGAAAA+AGG | 0.328185 | 7.1:-29871268 | MS.gene87762:CDS |
| CCACTCCCCACCACCATAAT+AGG | 0.328414 | 7.1:-29871318 | MS.gene87762:CDS |
| ACAATATTGAGGACCTATTA+TGG | 0.329253 | 7.1:+29871305 | None:intergenic |
| TTTGGTCTTAAATTGCATTA+GGG | 0.330409 | 7.1:+29869086 | None:intergenic |
| AAACATCGTCTTCAAAGTTA+AGG | 0.341780 | 7.1:-29871202 | MS.gene87762:CDS |
| AGCAAGAAACACATCTAATT+TGG | 0.342809 | 7.1:+29869068 | None:intergenic |
| ACCGCGAGTTCCACCGGATA+TGG | 0.358762 | 7.1:+29871279 | None:intergenic |
| GTGGCATTAATCGTGATTCT+TGG | 0.373611 | 7.1:-29868730 | MS.gene87762:CDS |
| CCTATTATGGTGGTGGGGAG+TGG | 0.386608 | 7.1:+29871318 | None:intergenic |
| GATAAACTGTGACCATAAAA+TGG | 0.388429 | 7.1:+29868776 | None:intergenic |
| TAGGGTGATGATGGGGTTAC+CGG | 0.389725 | 7.1:+29871134 | None:intergenic |
| TTAACCGTTACTGATGTTAA+CGG | 0.399229 | 7.1:-29871225 | MS.gene87762:CDS |
| AACATCGTCTTCAAAGTTAA+GGG | 0.424422 | 7.1:-29871201 | MS.gene87762:CDS |
| TCAATATTGTGCTCCATATC+CGG | 0.435942 | 7.1:-29871292 | MS.gene87762:CDS |
| CTTACGGCGTAGGGTGATGA+TGG | 0.462386 | 7.1:+29871125 | None:intergenic |
| TATAAAAGCGTAATCAATGT+TGG | 0.462661 | 7.1:+29868753 | None:intergenic |
| TTCACCACCGCGAGTTCCAC+CGG | 0.471983 | 7.1:+29871273 | None:intergenic |
| GCAGAAGGTTGTGGTTGGTA+AGG | 0.473928 | 7.1:+29871357 | None:intergenic |
| ATTATGGTGGTGGGGAGTGG+TGG | 0.478500 | 7.1:+29871321 | None:intergenic |
| ATAAAAGCGTAATCAATGTT+GGG | 0.479628 | 7.1:+29868754 | None:intergenic |
| GTGGTGGGGAGTGGTGGCAT+CGG | 0.489299 | 7.1:+29871327 | None:intergenic |
| ATCTAATAACATTGTTGCAC+AGG | 0.491705 | 7.1:-29868965 | MS.gene87762:intron |
| TTGAGGACCTATTATGGTGG+TGG | 0.512301 | 7.1:+29871311 | None:intergenic |
| CATACGTGACCATCGTGTCT+TGG | 0.522825 | 7.1:-29871166 | MS.gene87762:CDS |
| ACTTTAAAGTCAGAGGCAGT+TGG | 0.523990 | 7.1:-29869020 | MS.gene87762:CDS |
| CGATCTTGCACTGTTTATGT+TGG | 0.555625 | 7.1:-29868991 | MS.gene87762:CDS |
| TGAGGACCTATTATGGTGGT+GGG | 0.561040 | 7.1:+29871312 | None:intergenic |
| TGAACATACCTTACGGCGTA+GGG | 0.561192 | 7.1:+29871116 | None:intergenic |
| ATTGACTATGCATGATCGGT+GGG | 0.561743 | 7.1:-29869169 | MS.gene87762:CDS |
| GATCGGTGGGAAGCGTATAG+AGG | 0.562084 | 7.1:-29869156 | MS.gene87762:CDS |
| AGGTCAAAGCACAAATGCTA+AGG | 0.563005 | 7.1:-29869136 | MS.gene87762:CDS |
| GGTGCAGATGCAGAAGGTTG+TGG | 0.563335 | 7.1:+29871348 | None:intergenic |
| AACGGTTAAGTTGTCTGCAA+TGG | 0.565832 | 7.1:+29871239 | None:intergenic |
| TTACGGCGTAGGGTGATGAT+GGG | 0.566516 | 7.1:+29871126 | None:intergenic |
| CGTGTCTTGGTTGATGCTGC+CGG | 0.569858 | 7.1:-29871153 | MS.gene87762:CDS |
| CATCATCACCCTACGCCGTA+AGG | 0.571573 | 7.1:-29871124 | MS.gene87762:intron |
| GTTTGTGACTTTAAAGTCAG+AGG | 0.577508 | 7.1:-29869027 | MS.gene87762:CDS |
| TCCATATCCGGTGGAACTCG+CGG | 0.595940 | 7.1:-29871280 | MS.gene87762:CDS |
| GTTTCCGTTAACATCAGTAA+CGG | 0.602853 | 7.1:+29871221 | None:intergenic |
| TATTGACTATGCATGATCGG+TGG | 0.603063 | 7.1:-29869170 | MS.gene87762:CDS |
| GGATATGGAGCACAATATTG+AGG | 0.615894 | 7.1:+29871294 | None:intergenic |
| CAAGACACGATGGTCACGTA+TGG | 0.619894 | 7.1:+29871167 | None:intergenic |
| TTGAACATACCTTACGGCGT+AGG | 0.631716 | 7.1:+29871115 | None:intergenic |
| ATGCAAAGAATAGTAACTAG+AGG | 0.634925 | 7.1:-29868693 | None:intergenic |
| AGATATTGACTATGCATGAT+CGG | 0.641095 | 7.1:-29869173 | MS.gene87762:CDS |
| ATATTGTGCTCCATATCCGG+TGG | 0.649750 | 7.1:-29871289 | MS.gene87762:CDS |
| CAGATGCAGAAGGTTGTGGT+TGG | 0.668516 | 7.1:+29871352 | None:intergenic |
| GAGGACCTATTATGGTGGTG+GGG | 0.685164 | 7.1:+29871313 | None:intergenic |
| GGCATCGGTGCAGATGCAGA+AGG | 0.689277 | 7.1:+29871342 | None:intergenic |
| CAGCATCAACCAAGACACGA+TGG | 0.711074 | 7.1:+29871157 | None:intergenic |
| ATATTGAGGACCTATTATGG+TGG | 0.714411 | 7.1:+29871308 | None:intergenic |
| TACGGCGTAGGGTGATGATG+GGG | 0.719331 | 7.1:+29871127 | None:intergenic |
| ATATCCGGTGGAACTCGCGG+TGG | 0.725650 | 7.1:-29871277 | MS.gene87762:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAAAATAGAAATGAAA+TGG | - | chr7.1:29870045-29870064 | MS.gene87762:intron | 10.0% |
| !! | ATTAAAAATAGAAATGAAAT+GGG | - | chr7.1:29870046-29870065 | MS.gene87762:intron | 10.0% |
| !! | TACAAGAAATAAATAAAATT+GGG | + | chr7.1:29870538-29870557 | None:intergenic | 10.0% |
| !! | TTACAAGAAATAAATAAAAT+TGG | + | chr7.1:29870539-29870558 | None:intergenic | 10.0% |
| !! | TTTAGTTACAAATAAAAAAA+AGG | - | chr7.1:29869003-29869022 | MS.gene87762:CDS | 10.0% |
| !!! | AATTTTATTTATTTCTTGTA+AGG | - | chr7.1:29870538-29870557 | MS.gene87762:intron | 10.0% |
| !!! | ATTTTATTTATTTCTTGTAA+GGG | - | chr7.1:29870539-29870558 | MS.gene87762:intron | 10.0% |
| !!! | TTAAACTACATTATTTTTAT+AGG | + | chr7.1:29870838-29870857 | None:intergenic | 10.0% |
| !! | AACTATTAATTTAACTCAAT+TGG | - | chr7.1:29869572-29869591 | MS.gene87762:intron | 15.0% |
| !! | AGACCAAATAAATTAAAAAT+GGG | - | chr7.1:29869735-29869754 | MS.gene87762:intron | 15.0% |
| !! | TAGACCAAATAAATTAAAAA+TGG | - | chr7.1:29869734-29869753 | MS.gene87762:intron | 15.0% |
| !!! | TTCATTTCTATTTTTAATTG+AGG | + | chr7.1:29870044-29870063 | None:intergenic | 15.0% |
| !!! | TTTTAATTAAGTACTTTGAT+TGG | - | chr7.1:29871152-29871171 | MS.gene87762:CDS | 15.0% |
| !! | ATAAATTAAAAATGGGGAAT+TGG | - | chr7.1:29869742-29869761 | MS.gene87762:intron | 20.0% |
| !! | ATCTTTAGTGTAAAAAAGTA+AGG | - | chr7.1:29870410-29870429 | MS.gene87762:intron | 20.0% |
| !! | GACCAAATAAATTAAAAATG+GGG | - | chr7.1:29869736-29869755 | MS.gene87762:intron | 20.0% |
| !! | TAAAGACATTTAATCTAAAC+CGG | + | chr7.1:29870315-29870334 | None:intergenic | 20.0% |
| !! | TCTAATTGATAAGATAAGAT+CGG | + | chr7.1:29869665-29869684 | None:intergenic | 20.0% |
| !! | TCTTAAGATATAAGATTCAA+TGG | - | chr7.1:29869074-29869093 | MS.gene87762:CDS | 20.0% |
| !!! | AGTCACAAATTAATTTTTTG+TGG | - | chr7.1:29871198-29871217 | MS.gene87762:CDS | 20.0% |
| !!! | GAGAAGATTTTTTTTAATCT+CGG | + | chr7.1:29870741-29870760 | None:intergenic | 20.0% |
| !!! | TTCCCCATTTTTAATTTATT+TGG | + | chr7.1:29869741-29869760 | None:intergenic | 20.0% |
| ! | AAAAAGTTAGTACAATCAGA+TGG | - | chr7.1:29869328-29869347 | MS.gene87762:intron | 25.0% |
| ! | AAAAGTTAGTACAATCAGAT+GGG | - | chr7.1:29869329-29869348 | MS.gene87762:intron | 25.0% |
| ! | AAAATAGAAATGAAATGGGT+TGG | - | chr7.1:29870050-29870069 | MS.gene87762:intron | 25.0% |
| ! | ATAAAGTTGAACATACCTTA+CGG | + | chr7.1:29868956-29868975 | None:intergenic | 25.0% |
| ! | ATCTTATCAATTAGATGTTG+TGG | - | chr7.1:29869670-29869689 | MS.gene87762:intron | 25.0% |
| ! | TTGACATATCTTATTCATAC+TGG | + | chr7.1:29869219-29869238 | None:intergenic | 25.0% |
| ! | TTGTGACTAGTATATATAGT+CGG | + | chr7.1:29871186-29871205 | None:intergenic | 25.0% |
| !! | AATTGGTAAAGACCATTTTA+TGG | - | chr7.1:29871274-29871293 | MS.gene87762:CDS | 25.0% |
| !! | ATAAAAGCGTAATCAATGTT+GGG | + | chr7.1:29871311-29871330 | None:intergenic | 25.0% |
| !! | TATAAAAGCGTAATCAATGT+TGG | + | chr7.1:29871312-29871331 | None:intergenic | 25.0% |
| !! | TTAAATAAGTTAGCCCATTT+TGG | + | chr7.1:29870292-29870311 | None:intergenic | 25.0% |
| !! | TTATTTATTTCTTGTAAGGG+TGG | - | chr7.1:29870542-29870561 | MS.gene87762:intron | 25.0% |
| !!! | ATTTGGTCTTAAATTGCATT+AGG | + | chr7.1:29870980-29870999 | None:intergenic | 25.0% |
| !!! | TTTGGTCTTAAATTGCATTA+GGG | + | chr7.1:29870979-29870998 | None:intergenic | 25.0% |
| AAAAAGACCCGTTTGTAATT+TGG | + | chr7.1:29869285-29869304 | None:intergenic | 30.0% | |
| AAACATCGTCTTCAAAGTTA+AGG | - | chr7.1:29868860-29868879 | MS.gene87762:intron | 30.0% | |
| AAAGCAAGCCAAATTACAAA+CGG | - | chr7.1:29869274-29869293 | MS.gene87762:intron | 30.0% | |
| AACATCGTCTTCAAAGTTAA+GGG | - | chr7.1:29868861-29868880 | MS.gene87762:intron | 30.0% | |
| ACAATATTGAGGACCTATTA+TGG | + | chr7.1:29868760-29868779 | None:intergenic | 30.0% | |
| ACTAACAAAGTCTACATTCA+AGG | + | chr7.1:29869838-29869857 | None:intergenic | 30.0% | |
| AGCAAGAAACACATCTAATT+TGG | + | chr7.1:29870997-29871016 | None:intergenic | 30.0% | |
| AGGATTAAACGACACTTTAT+TGG | + | chr7.1:29870818-29870837 | None:intergenic | 30.0% | |
| ATCTAATAACATTGTTGCAC+AGG | - | chr7.1:29871097-29871116 | MS.gene87762:intron | 30.0% | |
| CAACTTATTGATGTGATTTC+TGG | - | chr7.1:29869379-29869398 | MS.gene87762:intron | 30.0% | |
| GATAAACTGTGACCATAAAA+TGG | + | chr7.1:29871289-29871308 | None:intergenic | 30.0% | |
| GGATTAAACGACACTTTATT+GGG | + | chr7.1:29870817-29870836 | None:intergenic | 30.0% | |
| GTCTCAGATTTAAATACTTC+TGG | - | chr7.1:29870600-29870619 | MS.gene87762:intron | 30.0% | |
| TATCTCATTGATGCGTTTAA+AGG | + | chr7.1:29870449-29870468 | None:intergenic | 30.0% | |
| TGAATAAATAGATGCCAATG+TGG | + | chr7.1:29870766-29870785 | None:intergenic | 30.0% | |
| TGTGACTAGTATATATAGTC+GGG | + | chr7.1:29871185-29871204 | None:intergenic | 30.0% | |
| TTAACCGTTACTGATGTTAA+CGG | - | chr7.1:29868837-29868856 | MS.gene87762:intron | 30.0% | |
| TTACAATTTCTCTGCATTCA+GGG | - | chr7.1:29869971-29869990 | MS.gene87762:intron | 30.0% | |
| TTATAATTGACCGACCTATT+AGG | + | chr7.1:29869253-29869272 | None:intergenic | 30.0% | |
| TTGTAATTTATCTGCCTTCA+GGG | + | chr7.1:29869809-29869828 | None:intergenic | 30.0% | |
| TTTACAATTTCTCTGCATTC+AGG | - | chr7.1:29869970-29869989 | MS.gene87762:intron | 30.0% | |
| TTTGTAATTTATCTGCCTTC+AGG | + | chr7.1:29869810-29869829 | None:intergenic | 30.0% | |
| ! | AAATTACAAACGGGTCTTTT+TGG | - | chr7.1:29869284-29869303 | MS.gene87762:intron | 30.0% |
| ! | AGATATTGACTATGCATGAT+CGG | - | chr7.1:29870889-29870908 | MS.gene87762:intron | 30.0% |
| ! | CAAGTATACAAGCTTTTACT+TGG | - | chr7.1:29869029-29869048 | MS.gene87762:CDS | 30.0% |
| ! | GGTGCTAACAATTTTTATGT+TGG | - | chr7.1:29870621-29870640 | MS.gene87762:intron | 30.0% |
| ! | TTTTACTCCTCTAGTATTTG+TGG | - | chr7.1:29870115-29870134 | MS.gene87762:intron | 30.0% |
| !! | AATGGGCTAACTTATTTAAC+CGG | - | chr7.1:29870293-29870312 | MS.gene87762:intron | 30.0% |
| !! | CATTGATTACGCTTTTATAG+TGG | - | chr7.1:29871313-29871332 | MS.gene87762:CDS | 30.0% |
| !! | TCACATCAATAAGTTGATAG+TGG | + | chr7.1:29869375-29869394 | None:intergenic | 30.0% |
| AAAAATCTTCTCGTCCACAT+TGG | - | chr7.1:29870749-29870768 | MS.gene87762:intron | 35.0% | |
| AACTCAATTACAATCAGGTC+GGG | - | chr7.1:29870248-29870267 | MS.gene87762:intron | 35.0% | |
| AAGCAAGCCAAATTACAAAC+GGG | - | chr7.1:29869275-29869294 | MS.gene87762:intron | 35.0% | |
| ACTAACAAAGTCTGCATTCA+GGG | + | chr7.1:29869870-29869889 | None:intergenic | 35.0% | |
| ACTAACAGAGTCTACATTCA+GGG | - | chr7.1:29869942-29869961 | MS.gene87762:intron | 35.0% | |
| ACTAACGAAGTCTACATTCA+GGG | + | chr7.1:29869902-29869921 | None:intergenic | 35.0% | |
| ACTATGAGCTTGTGATCTAA+TGG | + | chr7.1:29870082-29870101 | None:intergenic | 35.0% | |
| AGACTCTGTTAGTCAATTTC+AGG | + | chr7.1:29869935-29869954 | None:intergenic | 35.0% | |
| ATATTGAGGACCTATTATGG+TGG | + | chr7.1:29868757-29868776 | None:intergenic | 35.0% | |
| CAACTCAATTACAATCAGGT+CGG | - | chr7.1:29870247-29870266 | MS.gene87762:intron | 35.0% | |
| CACATCTATGATCAAGAAGT+TGG | - | chr7.1:29869119-29869138 | MS.gene87762:CDS | 35.0% | |
| GACGATTCATTTCCTATTCA+GGG | + | chr7.1:29869778-29869797 | None:intergenic | 35.0% | |
| GACTCTGTTAGTCAATTTCA+GGG | + | chr7.1:29869934-29869953 | None:intergenic | 35.0% | |
| GATACAACGAACGACTAATT+TGG | + | chr7.1:29870713-29870732 | None:intergenic | 35.0% | |
| GTTTCCGTTAACATCAGTAA+CGG | + | chr7.1:29868844-29868863 | None:intergenic | 35.0% | |
| TCAATATTGTGCTCCATATC+CGG | - | chr7.1:29868770-29868789 | MS.gene87762:CDS | 35.0% | |
| TGACGATTCATTTCCTATTC+AGG | + | chr7.1:29869779-29869798 | None:intergenic | 35.0% | |
| TGATACACCACAAATACTAG+AGG | + | chr7.1:29870125-29870144 | None:intergenic | 35.0% | |
| TGTGCAACTCAATTACAATC+AGG | - | chr7.1:29870243-29870262 | MS.gene87762:intron | 35.0% | |
| TTGATCCATCTGCTAATTGA+AGG | - | chr7.1:29870675-29870694 | MS.gene87762:intron | 35.0% | |
| ! | AGTTACTTTAGTCCCTGAAT+GGG | + | chr7.1:29870017-29870036 | None:intergenic | 35.0% |
| ! | TAGTTACTTTAGTCCCTGAA+TGG | + | chr7.1:29870018-29870037 | None:intergenic | 35.0% |
| !! | CTTTAGAGTGTGTTCTCTTT+AGG | - | chr7.1:29870578-29870597 | MS.gene87762:intron | 35.0% |
| !! | GTTTGTGACTTTAAAGTCAG+AGG | - | chr7.1:29871035-29871054 | MS.gene87762:intron | 35.0% |
| !! | TAGTCATTGTGCTATTTGAC+TGG | + | chr7.1:29870381-29870400 | None:intergenic | 35.0% |
| ACGACACTTTATTGGGTCAT+TGG | + | chr7.1:29870810-29870829 | None:intergenic | 40.0% | |
| AGGTCAAAGCACAAATGCTA+AGG | - | chr7.1:29870926-29870945 | MS.gene87762:intron | 40.0% | |
| AGTACAATCAGATGGGTCAT+TGG | - | chr7.1:29869336-29869355 | MS.gene87762:intron | 40.0% | |
| ATAGATCGAGCCTAATAGGT+CGG | - | chr7.1:29869240-29869259 | MS.gene87762:intron | 40.0% | |
| ATCCATCTGCTAATTGAAGG+TGG | - | chr7.1:29870678-29870697 | MS.gene87762:intron | 40.0% | |
| ATTGACTATGCATGATCGGT+GGG | - | chr7.1:29870893-29870912 | MS.gene87762:intron | 40.0% | |
| CAAGATAGATCGAGCCTAAT+AGG | - | chr7.1:29869236-29869255 | MS.gene87762:intron | 40.0% | |
| CGACACTTTATTGGGTCATT+GGG | + | chr7.1:29870809-29870828 | None:intergenic | 40.0% | |
| CGATCTTGCACTGTTTATGT+TGG | - | chr7.1:29871071-29871090 | MS.gene87762:intron | 40.0% | |
| GACACTTTATTGGGTCATTG+GGG | + | chr7.1:29870808-29870827 | None:intergenic | 40.0% | |
| GACTAACAAAGTCTGCATTC+AGG | + | chr7.1:29869871-29869890 | None:intergenic | 40.0% | |
| GACTAACAGAGTCTACATTC+AGG | - | chr7.1:29869941-29869960 | MS.gene87762:intron | 40.0% | |
| GACTAACGAAGTCTACATTC+AGG | + | chr7.1:29869903-29869922 | None:intergenic | 40.0% | |
| GACTACTCATTTCCCATTCA+GGG | - | chr7.1:29870002-29870021 | MS.gene87762:intron | 40.0% | |
| GGATATGGAGCACAATATTG+AGG | + | chr7.1:29868771-29868790 | None:intergenic | 40.0% | |
| GTACAATCAGATGGGTCATT+GGG | - | chr7.1:29869337-29869356 | MS.gene87762:intron | 40.0% | |
| GTCTCAAACTCATGTCATCA+AGG | - | chr7.1:29870145-29870164 | MS.gene87762:intron | 40.0% | |
| GTGGCATTAATCGTGATTCT+TGG | - | chr7.1:29871332-29871351 | MS.gene87762:CDS | 40.0% | |
| TGACTACTCATTTCCCATTC+AGG | - | chr7.1:29870001-29870020 | MS.gene87762:intron | 40.0% | |
| TTCCACCTTCAATTAGCAGA+TGG | + | chr7.1:29870683-29870702 | None:intergenic | 40.0% | |
| ! | AACGGTTAAGTTGTCTGCAA+TGG | + | chr7.1:29868826-29868845 | None:intergenic | 40.0% |
| ! | TATTGACTATGCATGATCGG+TGG | - | chr7.1:29870892-29870911 | MS.gene87762:intron | 40.0% |
| !! | ACGGCTACGAGCATTTTAAT+TGG | - | chr7.1:29871257-29871276 | MS.gene87762:CDS | 40.0% |
| !! | ACTTTAAAGTCAGAGGCAGT+TGG | - | chr7.1:29871042-29871061 | MS.gene87762:intron | 40.0% |
| !! | AGAAATGAAATGGGTTGGAC+TGG | - | chr7.1:29870055-29870074 | MS.gene87762:intron | 40.0% |
| !! | TGCGTTTAAAGGCTGATTTG+AGG | + | chr7.1:29870438-29870457 | None:intergenic | 40.0% |
| ATATTGTGCTCCATATCCGG+TGG | - | chr7.1:29868773-29868792 | MS.gene87762:CDS | 45.0% | |
| TGAACATACCTTACGGCGTA+GGG | + | chr7.1:29868949-29868968 | None:intergenic | 45.0% | |
| TGAGGACCTATTATGGTGGT+GGG | + | chr7.1:29868753-29868772 | None:intergenic | 45.0% | |
| TTGAACATACCTTACGGCGT+AGG | + | chr7.1:29868950-29868969 | None:intergenic | 45.0% | |
| TTGAGGACCTATTATGGTGG+TGG | + | chr7.1:29868754-29868773 | None:intergenic | 45.0% | |
| ! | ATCGTCACTTTAGTCCCTGA+AGG | - | chr7.1:29869792-29869811 | MS.gene87762:intron | 45.0% |
| ! | GCAGATGCACAAAAAGCACA+CGG | - | chr7.1:29871238-29871257 | MS.gene87762:CDS | 45.0% |
| ! | GGTCACTTTAGTCCCTGAAT+AGG | - | chr7.1:29869763-29869782 | MS.gene87762:intron | 45.0% |
| !! | AGTTAGCCCATTTTGGCCTA+CGG | + | chr7.1:29870285-29870304 | None:intergenic | 45.0% |
| AGTTGTCCCGTAGGCCAAAA+TGG | - | chr7.1:29870275-29870294 | MS.gene87762:intron | 50.0% | |
| CAAGACACGATGGTCACGTA+TGG | + | chr7.1:29868898-29868917 | None:intergenic | 50.0% | |
| CAGATGCAGAAGGTTGTGGT+TGG | + | chr7.1:29868713-29868732 | None:intergenic | 50.0% | |
| CAGCATCAACCAAGACACGA+TGG | + | chr7.1:29868908-29868927 | None:intergenic | 50.0% | |
| CATACGTGACCATCGTGTCT+TGG | - | chr7.1:29868896-29868915 | MS.gene87762:intron | 50.0% | |
| GCCAATCTATGGGGACATGT+GGG | + | chr7.1:29870493-29870512 | None:intergenic | 50.0% | |
| GTCGCGTCATGCCAATCTAT+GGG | + | chr7.1:29870503-29870522 | None:intergenic | 50.0% | |
| GTTGTCCCGTAGGCCAAAAT+GGG | - | chr7.1:29870276-29870295 | MS.gene87762:intron | 50.0% | |
| TCGCGTCATGCCAATCTATG+GGG | + | chr7.1:29870502-29870521 | None:intergenic | 50.0% | |
| TGCCAATCTATGGGGACATG+TGG | + | chr7.1:29870494-29870513 | None:intergenic | 50.0% | |
| TTACGGCGTAGGGTGATGAT+GGG | + | chr7.1:29868939-29868958 | None:intergenic | 50.0% | |
| ! | GAGGACCTATTATGGTGGTG+GGG | + | chr7.1:29868752-29868771 | None:intergenic | 50.0% |
| ! | GCAGAAGGTTGTGGTTGGTA+AGG | + | chr7.1:29868708-29868727 | None:intergenic | 50.0% |
| !! | GTTAGCCCATTTTGGCCTAC+GGG | + | chr7.1:29870284-29870303 | None:intergenic | 50.0% |
| !! | TAGGGTGATGATGGGGTTAC+CGG | + | chr7.1:29868931-29868950 | None:intergenic | 50.0% |
| CATCATCACCCTACGCCGTA+AGG | - | chr7.1:29868938-29868957 | MS.gene87762:intron | 55.0% | |
| CCACTCCCCACCACCATAAT+AGG | - | chr7.1:29868744-29868763 | MS.gene87762:CDS | 55.0% | |
| CGTCGCGTCATGCCAATCTA+TGG | + | chr7.1:29870504-29870523 | None:intergenic | 55.0% | |
| CTTACGGCGTAGGGTGATGA+TGG | + | chr7.1:29868940-29868959 | None:intergenic | 55.0% | |
| GCCCACATGTCCCCATAGAT+TGG | - | chr7.1:29870489-29870508 | MS.gene87762:intron | 55.0% | |
| GGAACTCGCGGTGGTGAAAA+AGG | - | chr7.1:29868794-29868813 | MS.gene87762:CDS | 55.0% | |
| GGTGCAGATGCAGAAGGTTG+TGG | + | chr7.1:29868717-29868736 | None:intergenic | 55.0% | |
| TCCATATCCGGTGGAACTCG+CGG | - | chr7.1:29868782-29868801 | MS.gene87762:CDS | 55.0% | |
| ! | CGTGTCTTGGTTGATGCTGC+CGG | - | chr7.1:29868909-29868928 | MS.gene87762:intron | 55.0% |
| ! | GATCGGTGGGAAGCGTATAG+AGG | - | chr7.1:29870906-29870925 | MS.gene87762:intron | 55.0% |
| ! | TACGGCGTAGGGTGATGATG+GGG | + | chr7.1:29868938-29868957 | None:intergenic | 55.0% |
| ! | TCGGGTTGTAGTTGTCCCGT+AGG | - | chr7.1:29870266-29870285 | MS.gene87762:intron | 55.0% |
| !! | ATTATGGTGGTGGGGAGTGG+TGG | + | chr7.1:29868744-29868763 | None:intergenic | 55.0% |
| !! | CCTATTATGGTGGTGGGGAG+TGG | + | chr7.1:29868747-29868766 | None:intergenic | 55.0% |
| ACCGCGAGTTCCACCGGATA+TGG | + | chr7.1:29868786-29868805 | None:intergenic | 60.0% | |
| ATATCCGGTGGAACTCGCGG+TGG | - | chr7.1:29868785-29868804 | MS.gene87762:CDS | 60.0% | |
| TTCACCACCGCGAGTTCCAC+CGG | + | chr7.1:29868792-29868811 | None:intergenic | 60.0% | |
| !! | GGCATCGGTGCAGATGCAGA+AGG | + | chr7.1:29868723-29868742 | None:intergenic | 60.0% |
| ! | GTGGTGGGGAGTGGTGGCAT+CGG | + | chr7.1:29868738-29868757 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 29868696 | 29871388 | 29868696 | ID=MS.gene87762 |
| chr7.1 | mRNA | 29868696 | 29871388 | 29868696 | ID=MS.gene87762.t1;Parent=MS.gene87762 |
| chr7.1 | exon | 29871125 | 29871388 | 29871125 | ID=MS.gene87762.t1.exon1;Parent=MS.gene87762.t1 |
| chr7.1 | CDS | 29871125 | 29871388 | 29871125 | ID=cds.MS.gene87762.t1;Parent=MS.gene87762.t1 |
| chr7.1 | exon | 29868966 | 29869193 | 29868966 | ID=MS.gene87762.t1.exon2;Parent=MS.gene87762.t1 |
| chr7.1 | CDS | 29868966 | 29869193 | 29868966 | ID=cds.MS.gene87762.t1;Parent=MS.gene87762.t1 |
| chr7.1 | exon | 29868696 | 29868842 | 29868696 | ID=MS.gene87762.t1.exon3;Parent=MS.gene87762.t1 |
| chr7.1 | CDS | 29868696 | 29868842 | 29868696 | ID=cds.MS.gene87762.t1;Parent=MS.gene87762.t1 |
| Gene Sequence |
| Protein sequence |
