AlfalfaGEDB | MS.gene87046

M. sativa cultivar XinJiangDaYe / MS.gene87046

KEGG: -
GO: -
PFAM: PF04525.15

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87046.t1	XP_012569043.1	82.8	209	28	3	3	203	1	209	5.50E-90	340.5

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87046.t1	Q9LZX1	55.1	207	85	3	2	201	6	211	2.9e-63	243.0

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87046.t1	A0A1S3E0S2	82.8	209	28	3	3	203	1	209	4.0e-90	340.5

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network:

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049313	MS.gene87046	0.813039	3.13E-51	-1.69E-46
MS.gene050363	MS.gene87046	0.818103	2.33E-52	-1.69E-46
MS.gene050381	MS.gene87046	0.801116	1.05E-48	-1.69E-46
MS.gene056408	MS.gene87046	0.804029	2.63E-49	-1.69E-46

Showing 1 to 4 of 4 entries

Previous1Next

PPI:

Show entries

Search:

Gene1	Gene2	Type
MS.gene009718	MS.gene87046	PPI
MS.gene009719	MS.gene87046	PPI
MS.gene051028	MS.gene87046	PPI
MS.gene26305	MS.gene87046	PPI
MS.gene42091	MS.gene87046	PPI
MS.gene42096	MS.gene87046	PPI
MS.gene42097	MS.gene87046	PPI
MS.gene42098	MS.gene87046	PPI
MS.gene42099	MS.gene87046	PPI
MS.gene42100	MS.gene87046	PPI

Showing 1 to 10 of 29 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87046.t1	MTR_7g072270	95.283	212	4	1	3	208	1	212	2.48e-151	418
MS.gene87046.t1	MTR_7g072120	81.604	212	31	3	3	206	1	212	1.24e-125	353
MS.gene87046.t1	MTR_7g072170	80.374	214	34	3	3	208	1	214	1.19e-124	351
MS.gene87046.t1	MTR_7g072140	79.245	212	36	3	3	206	1	212	1.33e-120	341
MS.gene87046.t1	MTR_7g072250	76.233	223	32	4	3	208	25	243	6.28e-115	327
MS.gene87046.t1	MTR_7g072270	93.333	165	5	1	3	161	1	165	6.92e-114	322
MS.gene87046.t1	MTR_4g029430	56.842	190	71	2	21	203	12	197	2.97e-77	230
MS.gene87046.t1	MTR_7g071710	81.897	116	21	0	88	203	1	116	2.46e-71	213
MS.gene87046.t1	MTR_1g014180	53.439	189	72	6	20	197	1	184	6.12e-59	183
MS.gene87046.t1	MTR_1g014150	45.745	188	91	5	17	197	5	188	4.75e-47	153

Showing 1 to 10 of 18 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene87046.t1	AT5G01750	54.028	211	89	3	2	205	6	215	5.15e-88	258
MS.gene87046.t1	AT3G11740	59.677	186	67	3	24	201	3	188	6.10e-80	237
MS.gene87046.t1	AT2G14560	49.468	188	88	2	21	201	4	191	1.87e-66	203
MS.gene87046.t1	AT1G33840	49.020	204	96	3	5	201	9	211	2.03e-66	204
MS.gene87046.t1	AT2G14560	49.468	188	88	2	21	201	64	251	3.08e-65	202
MS.gene87046.t1	AT5G01750	51.786	168	73	3	2	162	6	172	2.68e-64	197
MS.gene87046.t1	AT2G14560	46.667	150	73	2	21	163	4	153	3.02e-50	161
MS.gene87046.t1	AT2G14560	46.667	150	73	2	21	163	64	213	4.96e-49	160
MS.gene87046.t1	AT1G33840	45.783	166	82	3	5	163	9	173	3.40e-48	156
MS.gene87046.t1	AT3G16900	38.806	201	93	6	8	201	3	180	2.62e-44	146

Showing 1 to 10 of 17 entries

Previous1 2Next

Find 50 sgRNAs with CRISPR-Local

Find 138 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATCGTCTTCAAAGTTA+AGG	0.333496	7.4:-32250384	MS.gene87046:CDS
AACATCGTCTTCAAAGTTAA+GGG	0.424422	7.4:-32250383	MS.gene87046:CDS
AACGGTTAAGTTGTCTGCAA+TGG	0.565832	7.4:+32250421	None:intergenic
ACAATATTGAGGACCTATTA+TGG	0.329253	7.4:+32250487	None:intergenic
ACCGCAAGTTCCACCGGATA+CGG	0.507562	7.4:+32250461	None:intergenic
ACTTTAAAGTCAGAGGCAGT+TGG	0.523990	7.4:-32248509	MS.gene87046:CDS
AGATATTGACTATGCATGAT+CGG	0.578461	7.4:-32248662	MS.gene87046:CDS
AGCAAGAAACACATCTAATT+TGG	0.342809	7.4:+32248557	None:intergenic
AGGTCAAAGCACAAATGCTA+AGG	0.563005	7.4:-32248625	MS.gene87046:CDS
ATAAAAGCGTAATCAATGTT+GGG	0.479628	7.4:+32248245	None:intergenic

Showing 1 to 10 of 50 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAGACCCGTTTGTAATT+TGG	+	chr7.4:32248816-32248835	None:intergenic	30.0%
AAAATAGAAATGAAACGGGT+TGG	-	chr7.4:32249256-32249275	MS.gene87046:intron	30.0%
AAACATCGTCTTCAAAGTTA+AGG	-	chr7.4:32248357-32248376	MS.gene87046:intron	30.0%
AAAGCAAGCCAAATTACAAA+CGG	-	chr7.4:32248805-32248824	MS.gene87046:intron	30.0%
AAATTACATGCCAATCTATG+GGG	+	chr7.4:32249698-32249717	None:intergenic	30.0%
AACATCGTCTTCAAAGTTAA+GGG	-	chr7.4:32248358-32248377	MS.gene87046:intron	30.0%
ACAATATTGAGGACCTATTA+TGG	+	chr7.4:32248257-32248276	None:intergenic	30.0%
ACACATAGCGTAAAAAAGTA+AGG	-	chr7.4:32249606-32249625	MS.gene87046:intron	30.0%
AGCAAGAAACACATCTAATT+TGG	+	chr7.4:32250187-32250206	None:intergenic	30.0%
AGGATTAAACGACACTTTAT+TGG	+	chr7.4:32250006-32250025	None:intergenic	30.0%

Showing 1 to 10 of 138 entries

Previous1 2 3 4 5…14Next

Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	32248187	32250576	32248187	ID=MS.gene87046
chr7.4	mRNA	32248187	32250576	32248187	ID=MS.gene87046.t1;Parent=MS.gene87046
chr7.4	exon	32250325	32250576	32250325	ID=MS.gene87046.t1.exon1;Parent=MS.gene87046.t1
chr7.4	CDS	32250325	32250576	32250325	ID=cds.MS.gene87046.t1;Parent=MS.gene87046.t1
chr7.4	exon	32248455	32248682	32248455	ID=MS.gene87046.t1.exon2;Parent=MS.gene87046.t1
chr7.4	CDS	32248455	32248682	32248455	ID=cds.MS.gene87046.t1;Parent=MS.gene87046.t1
chr7.4	exon	32248187	32248333	32248187	ID=MS.gene87046.t1.exon3;Parent=MS.gene87046.t1
chr7.4	CDS	32248187	32248333	32248187	ID=cds.MS.gene87046.t1;Parent=MS.gene87046.t1

Gene Sequence

>MS.gene87046

ATGATCATGGCTTATCCTTATCAACCACAACCTTCTGCATCTGCACCGATGCCACCACTCCCCACCACCATAATAGGTCCTCAATATTGTACTCCGTATCCGGTGGAACTTGCGGTGGTGAAAAAGGTGATGACCATTGCAGACAACTTAACCGTTACTGATGTCAATGGAAACATCGTCTTCAAAGTTAAGGGTTCTGTGTTTACCATACGTGACCACCGTGTCTTGGTTGATGCCGCCGGTAACCCCATCGTCACCCTACGTCGTAAGGTATGTTCAACTTTATTCTCTCTTTCTGTTTCTATTTTTTTTATTTAGTTACAGATAAAAAAAGGTTACTAGTATACAAGCTTTTACTTGGATCATACATACACTTATCATTGTCTTAAGATATAAGATTCAATGGTGATTACTAAATAGTCAATACACACATCTATGATCAAGAAGTTGGCAGATTTGTTTGTCTTTACAATTTGATTCAATACAATAACATAGCTATAAAATATATGTTTGTCTACGCTATGTCCAATATGAATAAGATATGTCAAAATAGATCGAGCCTAATAGGTCGGTCCATTATAATTAGTCCATAATTTTGTATGTAATGAGTTGTAAAAAAAAGCAAGCCAAATTACAAACGGGTCTTTTTGGTCTAATCTATTTAGCTCATATAAAAAGTTAGTGGATTCCACTATCAACTTATTGATGTGATTTCTGGAAAAATAATAGTAAAAAGTTTAAAAATTTAACATCAAATTTGAAAACTATAAATAAAAAACTATTTTTTTTTGAAAGAAAAAAAATAGTTTTTTGAAAGATAAAACTATTTAAATATGTAAACTTAATAAATATATATACTTAGTTAAAACTAATAAAATTTTGAAGTTTTTAAACTATTAATTTAACTCAATTGGAGAATAAATCTTGAGTTTAATTGATTTTGATTGTTATTTATCAATGTAAAAGAATTTATGCTTGCATCCGATCTTATCTTATCAATTAGATGTTGTGGACACTAAAGCATAAAAGTAACAAAGAAATTAAACGAGTGAATAGACCAAATAAATTAAAAATAGAAATGAAACGGGTTGGACTGGTCCATTAGATCACAAGCTCATAGTAGGTTTTTTTTTTACTCCTCTAGTATTTGTGGTGTATCAGTCTCAAACTCAGGTCATCAAGGTTGAAGAGTTAATTTTCAATCAAGTAATTTATGAAAAAATCGACAAAGCTTGTAGTAGATGAGTTGTACTTAATAATGTGCAACTCAATTACAATCAGGTCGGGTTATAGTCGGCCCGTAGGCCAATATGGGCTAACTTATTTAACCGGTTTAGATTAAATGTCTTAAATGTTTGTGTAAAGTTGTTTATAATACATCTTTTTTTTTTCTAGTCAAATAGCACAATGACTAGATTTACACATAGCGTAAAAAAGTAAGGAACCCCAAATCAGCCTTTAAACGCATCAATGAGATATTTTACAATACAATCTTCTCGCCCACATGTCCCCATAGATTGGCATGTAATTTTCTGTCCCAATTTTATTTATTTCTTGTAGTGGTGGTGTAGGATTGAAACTTTAGAGTGTGTTCTCTTTAGGTCTCAGATTTAAATACTTCTGGTGCTAACAATTTTTATGTTGGATCAATCGATACAATTTTGCTCTAACTTCAATTGAGCCATCTGCTAATTGAAGGTGGAATTGAATTCCAAATTAGTCGTTCGTTGTATCAGATACCGAGATTAAAAAAAAATCTTCTCGCCCACATTGGCATCTATTTATTCATTCAAAAAACTTTAAATACCCCAATGACCCAATAAAGTGTCGTTTAATCCTATAAAAATAATGTAGTTTAATGTTTCATTTTTTTGTTGTACTACTATTTGTACAGATATTGACTATGCATGATCGGTGGGAAGCGTATAGAGGTCAAAGCACAAATGCTAAGGATCTAATATTTACATTGAAACGATCATCCCTAATGCAATTTAAGACCAAATTAGATGTGTTTCTTGCTAGTAACACAAAAGAAGATGTTTGTGACTTTAAAGTCAGAGGCAGTTGGTTTGAACGATCTTGCACTGTTTATGCTGGTGAATCTAATAACATTGTTGCACAGGTATAAGCATTATTTTATATAGCGTATTTCATTTTAATTAAGTACTTTGATTGGATTATCACCCGACTATATATACTAATCACAAATTAATTTTTTGTGGCATTATTGTTTGTTATTGCAGATGCACAAAAAGCACACGGTTACGAGCATTTTAATTGGTAAAGACCATTTTATGGTCACAGTTTATCCCAACATTGATTACGCTTTTATAGTGGCATTAATCGTGATTCTTGGCGAGATTAACGATGATGCAAAGAATAGTAACTAG

Protein sequence

>MS.gene87046.t1

MIMAYPYQPQPSASAPMPPLPTTIIGPQYCTPYPVELAVVKKVMTIADNLTVTDVNGNIVFKVKGSVFTIRDHRVLVDAAGNPIILTMHDRWEAYRGQSTNAKDLIFTLKRSSLMQFKTKLDVFLASNTKEDVCDFKVRGSWFERSCTVYAGESNNIVAQMHKKHTVTSILIGKDHFMVTVYPNIDYAFIVALIVILGEINDDAKNSN