Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87046.t1 | XP_012569043.1 | 82.8 | 209 | 28 | 3 | 3 | 203 | 1 | 209 | 5.50E-90 | 340.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87046.t1 | Q9LZX1 | 55.1 | 207 | 85 | 3 | 2 | 201 | 6 | 211 | 2.9e-63 | 243.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87046.t1 | A0A1S3E0S2 | 82.8 | 209 | 28 | 3 | 3 | 203 | 1 | 209 | 4.0e-90 | 340.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049313 | MS.gene87046 | 0.813039 | 3.13E-51 | -1.69E-46 |
| MS.gene050363 | MS.gene87046 | 0.818103 | 2.33E-52 | -1.69E-46 |
| MS.gene050381 | MS.gene87046 | 0.801116 | 1.05E-48 | -1.69E-46 |
| MS.gene056408 | MS.gene87046 | 0.804029 | 2.63E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene87038 | MS.gene87046 | PPI |
| MS.gene87769 | MS.gene87046 | PPI |
| MS.gene26305 | MS.gene87046 | PPI |
| MS.gene009719 | MS.gene87046 | PPI |
| MS.gene42103 | MS.gene87046 | PPI |
| MS.gene42098 | MS.gene87046 | PPI |
| MS.gene87046 | MS.gene91238 | PPI |
| MS.gene87043 | MS.gene87046 | PPI |
| MS.gene99704 | MS.gene87046 | PPI |
| MS.gene051028 | MS.gene87046 | PPI |
| MS.gene87046 | MS.gene25045 | PPI |
| MS.gene87767 | MS.gene87046 | PPI |
| MS.gene87039 | MS.gene87046 | PPI |
| MS.gene42848 | MS.gene87046 | PPI |
| MS.gene87046 | MS.gene81036 | PPI |
| MS.gene42099 | MS.gene87046 | PPI |
| MS.gene42091 | MS.gene87046 | PPI |
| MS.gene99705 | MS.gene87046 | PPI |
| MS.gene42100 | MS.gene87046 | PPI |
| MS.gene87040 | MS.gene87046 | PPI |
| MS.gene87765 | MS.gene87046 | PPI |
| MS.gene87046 | MS.gene87762 | PPI |
| MS.gene42096 | MS.gene87046 | PPI |
| MS.gene91237 | MS.gene87046 | PPI |
| MS.gene87768 | MS.gene87046 | PPI |
| MS.gene87041 | MS.gene87046 | PPI |
| MS.gene42097 | MS.gene87046 | PPI |
| MS.gene87762 | MS.gene87046 | PPI |
| MS.gene009718 | MS.gene87046 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87046.t1 | MTR_7g072270 | 95.283 | 212 | 4 | 1 | 3 | 208 | 1 | 212 | 2.48e-151 | 418 |
| MS.gene87046.t1 | MTR_7g072120 | 81.604 | 212 | 31 | 3 | 3 | 206 | 1 | 212 | 1.24e-125 | 353 |
| MS.gene87046.t1 | MTR_7g072170 | 80.374 | 214 | 34 | 3 | 3 | 208 | 1 | 214 | 1.19e-124 | 351 |
| MS.gene87046.t1 | MTR_7g072140 | 79.245 | 212 | 36 | 3 | 3 | 206 | 1 | 212 | 1.33e-120 | 341 |
| MS.gene87046.t1 | MTR_7g072250 | 76.233 | 223 | 32 | 4 | 3 | 208 | 25 | 243 | 6.28e-115 | 327 |
| MS.gene87046.t1 | MTR_7g072270 | 93.333 | 165 | 5 | 1 | 3 | 161 | 1 | 165 | 6.92e-114 | 322 |
| MS.gene87046.t1 | MTR_4g029430 | 56.842 | 190 | 71 | 2 | 21 | 203 | 12 | 197 | 2.97e-77 | 230 |
| MS.gene87046.t1 | MTR_7g071710 | 81.897 | 116 | 21 | 0 | 88 | 203 | 1 | 116 | 2.46e-71 | 213 |
| MS.gene87046.t1 | MTR_1g014180 | 53.439 | 189 | 72 | 6 | 20 | 197 | 1 | 184 | 6.12e-59 | 183 |
| MS.gene87046.t1 | MTR_1g014150 | 45.745 | 188 | 91 | 5 | 17 | 197 | 5 | 188 | 4.75e-47 | 153 |
| MS.gene87046.t1 | MTR_1g014160 | 41.237 | 194 | 86 | 7 | 26 | 197 | 52 | 239 | 7.67e-31 | 113 |
| MS.gene87046.t1 | MTR_5g074550 | 34.270 | 178 | 100 | 7 | 34 | 197 | 17 | 191 | 1.58e-23 | 93.2 |
| MS.gene87046.t1 | MTR_2g103840 | 30.357 | 168 | 103 | 6 | 47 | 204 | 42 | 205 | 1.51e-20 | 86.3 |
| MS.gene87046.t1 | MTR_5g074560 | 32.164 | 171 | 103 | 7 | 34 | 197 | 20 | 184 | 8.27e-19 | 80.9 |
| MS.gene87046.t1 | MTR_4g010180 | 25.263 | 190 | 129 | 7 | 24 | 203 | 7 | 193 | 1.32e-17 | 78.2 |
| MS.gene87046.t1 | MTR_2g103850 | 26.601 | 203 | 134 | 7 | 12 | 203 | 7 | 205 | 3.28e-16 | 74.3 |
| MS.gene87046.t1 | MTR_0650s0010 | 25.654 | 191 | 124 | 6 | 24 | 197 | 7 | 196 | 2.53e-12 | 63.5 |
| MS.gene87046.t1 | MTR_8g099000 | 26.699 | 206 | 120 | 10 | 21 | 200 | 31 | 231 | 4.06e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87046.t1 | AT5G01750 | 54.028 | 211 | 89 | 3 | 2 | 205 | 6 | 215 | 5.15e-88 | 258 |
| MS.gene87046.t1 | AT3G11740 | 59.677 | 186 | 67 | 3 | 24 | 201 | 3 | 188 | 6.10e-80 | 237 |
| MS.gene87046.t1 | AT2G14560 | 49.468 | 188 | 88 | 2 | 21 | 201 | 4 | 191 | 1.87e-66 | 203 |
| MS.gene87046.t1 | AT1G33840 | 49.020 | 204 | 96 | 3 | 5 | 201 | 9 | 211 | 2.03e-66 | 204 |
| MS.gene87046.t1 | AT2G14560 | 49.468 | 188 | 88 | 2 | 21 | 201 | 64 | 251 | 3.08e-65 | 202 |
| MS.gene87046.t1 | AT5G01750 | 51.786 | 168 | 73 | 3 | 2 | 162 | 6 | 172 | 2.68e-64 | 197 |
| MS.gene87046.t1 | AT2G14560 | 46.667 | 150 | 73 | 2 | 21 | 163 | 4 | 153 | 3.02e-50 | 161 |
| MS.gene87046.t1 | AT2G14560 | 46.667 | 150 | 73 | 2 | 21 | 163 | 64 | 213 | 4.96e-49 | 160 |
| MS.gene87046.t1 | AT1G33840 | 45.783 | 166 | 82 | 3 | 5 | 163 | 9 | 173 | 3.40e-48 | 156 |
| MS.gene87046.t1 | AT3G16900 | 38.806 | 201 | 93 | 6 | 8 | 201 | 3 | 180 | 2.62e-44 | 146 |
| MS.gene87046.t1 | AT3G56180 | 34.021 | 194 | 112 | 5 | 23 | 206 | 17 | 204 | 1.45e-32 | 117 |
| MS.gene87046.t1 | AT3G56180 | 33.505 | 194 | 111 | 6 | 23 | 206 | 17 | 202 | 2.38e-30 | 111 |
| MS.gene87046.t1 | AT3G10986 | 32.487 | 197 | 116 | 5 | 23 | 206 | 3 | 195 | 1.06e-29 | 109 |
| MS.gene87046.t1 | AT3G15810 | 28.485 | 165 | 106 | 4 | 47 | 203 | 44 | 204 | 1.22e-20 | 86.3 |
| MS.gene87046.t1 | AT1G80120 | 30.357 | 168 | 102 | 5 | 47 | 203 | 30 | 193 | 1.69e-16 | 75.1 |
| MS.gene87046.t1 | AT2G30270 | 30.114 | 176 | 110 | 7 | 27 | 197 | 12 | 179 | 1.75e-15 | 71.6 |
| MS.gene87046.t1 | AT2G38640 | 28.497 | 193 | 122 | 7 | 18 | 200 | 6 | 192 | 1.31e-13 | 67.0 |
Find 50 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGGTCTTAAATTGCATT+AGG | 0.261327 | 7.4:+32248574 | None:intergenic |
| CCACTCCCCACCACCATAAT+AGG | 0.328414 | 7.4:-32250500 | MS.gene87046:CDS |
| ACAATATTGAGGACCTATTA+TGG | 0.329253 | 7.4:+32250487 | None:intergenic |
| TTTGGTCTTAAATTGCATTA+GGG | 0.330409 | 7.4:+32248575 | None:intergenic |
| AAACATCGTCTTCAAAGTTA+AGG | 0.333496 | 7.4:-32250384 | MS.gene87046:CDS |
| AGCAAGAAACACATCTAATT+TGG | 0.342809 | 7.4:+32248557 | None:intergenic |
| GTGGCATTAATCGTGATTCT+TGG | 0.373611 | 7.4:-32248221 | MS.gene87046:CDS |
| GGAACTTGCGGTGGTGAAAA+AGG | 0.380524 | 7.4:-32250450 | MS.gene87046:CDS |
| CCTATTATGGTGGTGGGGAG+TGG | 0.386608 | 7.4:+32250500 | None:intergenic |
| GATAAACTGTGACCATAAAA+TGG | 0.388429 | 7.4:+32248267 | None:intergenic |
| TAGGGTGACGATGGGGTTAC+CGG | 0.394628 | 7.4:+32250316 | None:intergenic |
| AACATCGTCTTCAAAGTTAA+GGG | 0.424422 | 7.4:-32250383 | MS.gene87046:CDS |
| CATCATCGTTATTATGATCA+TGG | 0.427591 | 7.4:-32250567 | None:intergenic |
| TCAATATTGTACTCCGTATC+CGG | 0.435276 | 7.4:-32250474 | MS.gene87046:CDS |
| GCAGAAGGTTGTGGTTGATA+AGG | 0.450340 | 7.4:+32250539 | None:intergenic |
| TATAAAAGCGTAATCAATGT+TGG | 0.462661 | 7.4:+32248244 | None:intergenic |
| ATTATGGTGGTGGGGAGTGG+TGG | 0.478500 | 7.4:+32250503 | None:intergenic |
| ATAAAAGCGTAATCAATGTT+GGG | 0.479628 | 7.4:+32248245 | None:intergenic |
| GTGGTGGGGAGTGGTGGCAT+CGG | 0.489299 | 7.4:+32250509 | None:intergenic |
| ATCTAATAACATTGTTGCAC+AGG | 0.491705 | 7.4:-32248454 | MS.gene87046:intron |
| ACCGCAAGTTCCACCGGATA+CGG | 0.507562 | 7.4:+32250461 | None:intergenic |
| CATACGTGACCACCGTGTCT+TGG | 0.511624 | 7.4:-32250348 | MS.gene87046:CDS |
| TTGAGGACCTATTATGGTGG+TGG | 0.512301 | 7.4:+32250493 | None:intergenic |
| TTAACCGTTACTGATGTCAA+TGG | 0.514599 | 7.4:-32250407 | MS.gene87046:CDS |
| TTCACCACCGCAAGTTCCAC+CGG | 0.520622 | 7.4:+32250455 | None:intergenic |
| CGATCTTGCACTGTTTATGC+TGG | 0.521359 | 7.4:-32248480 | MS.gene87046:CDS |
| ACTTTAAAGTCAGAGGCAGT+TGG | 0.523990 | 7.4:-32248509 | MS.gene87046:CDS |
| CGTGTCTTGGTTGATGCCGC+CGG | 0.540357 | 7.4:-32250335 | MS.gene87046:CDS |
| CAAGACACGGTGGTCACGTA+TGG | 0.560214 | 7.4:+32250349 | None:intergenic |
| TGAGGACCTATTATGGTGGT+GGG | 0.561040 | 7.4:+32250494 | None:intergenic |
| ATTGACTATGCATGATCGGT+GGG | 0.561743 | 7.4:-32248658 | MS.gene87046:CDS |
| GATCGGTGGGAAGCGTATAG+AGG | 0.562084 | 7.4:-32248645 | MS.gene87046:CDS |
| AGGTCAAAGCACAAATGCTA+AGG | 0.563005 | 7.4:-32248625 | MS.gene87046:CDS |
| GGTGCAGATGCAGAAGGTTG+TGG | 0.563335 | 7.4:+32250530 | None:intergenic |
| AACGGTTAAGTTGTCTGCAA+TGG | 0.565832 | 7.4:+32250421 | None:intergenic |
| GTTTGTGACTTTAAAGTCAG+AGG | 0.577508 | 7.4:-32248516 | MS.gene87046:CDS |
| AGATATTGACTATGCATGAT+CGG | 0.578461 | 7.4:-32248662 | MS.gene87046:CDS |
| GTTTCCATTGACATCAGTAA+CGG | 0.578916 | 7.4:+32250403 | None:intergenic |
| TCCGTATCCGGTGGAACTTG+CGG | 0.594001 | 7.4:-32250462 | MS.gene87046:CDS |
| TATTGACTATGCATGATCGG+TGG | 0.603063 | 7.4:-32248659 | MS.gene87046:CDS |
| GGATACGGAGTACAATATTG+AGG | 0.634570 | 7.4:+32250476 | None:intergenic |
| ATGCAAAGAATAGTAACTAG+AGG | 0.634925 | 7.4:-32248184 | None:intergenic |
| ATATTGTACTCCGTATCCGG+TGG | 0.669257 | 7.4:-32250471 | MS.gene87046:CDS |
| GGTGACGATGGGGTTACCGG+CGG | 0.670759 | 7.4:+32250319 | None:intergenic |
| GTATCCGGTGGAACTTGCGG+TGG | 0.674198 | 7.4:-32250459 | MS.gene87046:CDS |
| CGGCGGCATCAACCAAGACA+CGG | 0.676606 | 7.4:+32250336 | None:intergenic |
| GAGGACCTATTATGGTGGTG+GGG | 0.685164 | 7.4:+32250495 | None:intergenic |
| GGCATCGGTGCAGATGCAGA+AGG | 0.689277 | 7.4:+32250524 | None:intergenic |
| ATATTGAGGACCTATTATGG+TGG | 0.714411 | 7.4:+32250490 | None:intergenic |
| CGGCATCAACCAAGACACGG+TGG | 0.767771 | 7.4:+32250339 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTAAAAATAGAAATGAAA+CGG | - | chr7.4:32249251-32249270 | MS.gene87046:intron | 10.0% |
| !! | TACAAGAAATAAATAAAATT+GGG | + | chr7.4:32249726-32249745 | None:intergenic | 10.0% |
| !!! | TTAAACTACATTATTTTTAT+AGG | + | chr7.4:32250026-32250045 | None:intergenic | 10.0% |
| !! | AACTATTAATTTAACTCAAT+TGG | - | chr7.4:32249078-32249097 | MS.gene87046:intron | 15.0% |
| !! | ATTAAAAATAGAAATGAAAC+GGG | - | chr7.4:32249252-32249271 | MS.gene87046:intron | 15.0% |
| !! | ATTTAGTTACAGATAAAAAA+AGG | - | chr7.4:32248499-32248518 | MS.gene87046:CDS | 15.0% |
| !! | CTACAAGAAATAAATAAAAT+TGG | + | chr7.4:32249727-32249746 | None:intergenic | 15.0% |
| !!! | AAATTATGGACTAATTATAA+TGG | + | chr7.4:32248763-32248782 | None:intergenic | 15.0% |
| !!! | AATCACAAATTAATTTTTTG+TGG | - | chr7.4:32250386-32250405 | MS.gene87046:CDS | 15.0% |
| !!! | AGAAGATTTTTTTTTAATCT+CGG | + | chr7.4:32249929-32249948 | None:intergenic | 15.0% |
| !!! | ATTTTATTTATTTCTTGTAG+TGG | - | chr7.4:32249727-32249746 | MS.gene87046:intron | 15.0% |
| !!! | TTTTAATTAAGTACTTTGAT+TGG | - | chr7.4:32250340-32250359 | MS.gene87046:CDS | 15.0% |
| !! | ACTCATTACATACAAAATTA+TGG | + | chr7.4:32248777-32248796 | None:intergenic | 20.0% |
| !! | TCTAATTGATAAGATAAGAT+CGG | + | chr7.4:32249171-32249190 | None:intergenic | 20.0% |
| !! | TCTTAAGATATAAGATTCAA+TGG | - | chr7.4:32248570-32248589 | MS.gene87046:CDS | 20.0% |
| !! | TTAAGACATTTAATCTAAAC+CGG | + | chr7.4:32249518-32249537 | None:intergenic | 20.0% |
| !! | TTGACATATCTTATTCATAT+TGG | + | chr7.4:32248715-32248734 | None:intergenic | 20.0% |
| !! | TTGTGATTAGTATATATAGT+CGG | + | chr7.4:32250374-32250393 | None:intergenic | 20.0% |
| ! | AAAATTACATGCCAATCTAT+GGG | + | chr7.4:32249699-32249718 | None:intergenic | 25.0% |
| ! | ATCTTATCAATTAGATGTTG+TGG | - | chr7.4:32249176-32249195 | MS.gene87046:intron | 25.0% |
| ! | TAGCTCATATAAAAAGTTAG+TGG | - | chr7.4:32248849-32248868 | MS.gene87046:intron | 25.0% |
| ! | TGTGATTAGTATATATAGTC+GGG | + | chr7.4:32250373-32250392 | None:intergenic | 25.0% |
| ! | TTAAATAAGTTAGCCCATAT+TGG | + | chr7.4:32249495-32249514 | None:intergenic | 25.0% |
| !! | AATTGGTAAAGACCATTTTA+TGG | - | chr7.4:32250462-32250481 | MS.gene87046:CDS | 25.0% |
| !! | ATAAAAGCGTAATCAATGTT+GGG | + | chr7.4:32250499-32250518 | None:intergenic | 25.0% |
| !! | TATAAAAGCGTAATCAATGT+TGG | + | chr7.4:32250500-32250519 | None:intergenic | 25.0% |
| !! | TTATTTATTTCTTGTAGTGG+TGG | - | chr7.4:32249730-32249749 | MS.gene87046:intron | 25.0% |
| !!! | ATTTGGTCTTAAATTGCATT+AGG | + | chr7.4:32250170-32250189 | None:intergenic | 25.0% |
| !!! | TTTGGTCTTAAATTGCATTA+GGG | + | chr7.4:32250169-32250188 | None:intergenic | 25.0% |
| AAAAAGACCCGTTTGTAATT+TGG | + | chr7.4:32248816-32248835 | None:intergenic | 30.0% | |
| AAAATAGAAATGAAACGGGT+TGG | - | chr7.4:32249256-32249275 | MS.gene87046:intron | 30.0% | |
| AAACATCGTCTTCAAAGTTA+AGG | - | chr7.4:32248357-32248376 | MS.gene87046:intron | 30.0% | |
| AAAGCAAGCCAAATTACAAA+CGG | - | chr7.4:32248805-32248824 | MS.gene87046:intron | 30.0% | |
| AAATTACATGCCAATCTATG+GGG | + | chr7.4:32249698-32249717 | None:intergenic | 30.0% | |
| AACATCGTCTTCAAAGTTAA+GGG | - | chr7.4:32248358-32248377 | MS.gene87046:intron | 30.0% | |
| ACAATATTGAGGACCTATTA+TGG | + | chr7.4:32248257-32248276 | None:intergenic | 30.0% | |
| ACACATAGCGTAAAAAAGTA+AGG | - | chr7.4:32249606-32249625 | MS.gene87046:intron | 30.0% | |
| AGCAAGAAACACATCTAATT+TGG | + | chr7.4:32250187-32250206 | None:intergenic | 30.0% | |
| AGGATTAAACGACACTTTAT+TGG | + | chr7.4:32250006-32250025 | None:intergenic | 30.0% | |
| ATCTAATAACATTGTTGCAC+AGG | - | chr7.4:32250287-32250306 | MS.gene87046:intron | 30.0% | |
| CAACTTATTGATGTGATTTC+TGG | - | chr7.4:32248882-32248901 | MS.gene87046:intron | 30.0% | |
| GAAAATTACATGCCAATCTA+TGG | + | chr7.4:32249700-32249719 | None:intergenic | 30.0% | |
| GAATAAATAGATGCCAATGT+GGG | + | chr7.4:32249954-32249973 | None:intergenic | 30.0% | |
| GATAAACTGTGACCATAAAA+TGG | + | chr7.4:32250477-32250496 | None:intergenic | 30.0% | |
| GGATTAAACGACACTTTATT+GGG | + | chr7.4:32250005-32250024 | None:intergenic | 30.0% | |
| GTCTCAGATTTAAATACTTC+TGG | - | chr7.4:32249788-32249807 | MS.gene87046:intron | 30.0% | |
| TATCTCATTGATGCGTTTAA+AGG | + | chr7.4:32249645-32249664 | None:intergenic | 30.0% | |
| TGAATAAATAGATGCCAATG+TGG | + | chr7.4:32249955-32249974 | None:intergenic | 30.0% | |
| ! | AAATTACAAACGGGTCTTTT+TGG | - | chr7.4:32248815-32248834 | MS.gene87046:intron | 30.0% |
| ! | AGATATTGACTATGCATGAT+CGG | - | chr7.4:32250079-32250098 | MS.gene87046:intron | 30.0% |
| ! | CTAGTATACAAGCTTTTACT+TGG | - | chr7.4:32248525-32248544 | MS.gene87046:CDS | 30.0% |
| ! | GGTGCTAACAATTTTTATGT+TGG | - | chr7.4:32249809-32249828 | MS.gene87046:intron | 30.0% |
| ! | TATGGGCTAACTTATTTAAC+CGG | - | chr7.4:32249496-32249515 | MS.gene87046:intron | 30.0% |
| ! | TTTTACTCCTCTAGTATTTG+TGG | - | chr7.4:32249317-32249336 | MS.gene87046:intron | 30.0% |
| !! | CATTGATTACGCTTTTATAG+TGG | - | chr7.4:32250501-32250520 | MS.gene87046:CDS | 30.0% |
| !! | TCACATCAATAAGTTGATAG+TGG | + | chr7.4:32248878-32248897 | None:intergenic | 30.0% |
| AACTCAATTACAATCAGGTC+GGG | - | chr7.4:32249451-32249470 | MS.gene87046:intron | 35.0% | |
| AAGCAAGCCAAATTACAAAC+GGG | - | chr7.4:32248806-32248825 | MS.gene87046:intron | 35.0% | |
| ACTATGAGCTTGTGATCTAA+TGG | + | chr7.4:32249288-32249307 | None:intergenic | 35.0% | |
| ATATTGAGGACCTATTATGG+TGG | + | chr7.4:32248254-32248273 | None:intergenic | 35.0% | |
| CAAAATAGATCGAGCCTAAT+AGG | - | chr7.4:32248732-32248751 | MS.gene87046:intron | 35.0% | |
| CAACTCAATTACAATCAGGT+CGG | - | chr7.4:32249450-32249469 | MS.gene87046:intron | 35.0% | |
| CACATCTATGATCAAGAAGT+TGG | - | chr7.4:32248615-32248634 | MS.gene87046:CDS | 35.0% | |
| GATACAACGAACGACTAATT+TGG | + | chr7.4:32249901-32249920 | None:intergenic | 35.0% | |
| GTTTCCATTGACATCAGTAA+CGG | + | chr7.4:32248341-32248360 | None:intergenic | 35.0% | |
| TCAATATTGTACTCCGTATC+CGG | - | chr7.4:32248267-32248286 | MS.gene87046:CDS | 35.0% | |
| TGATACACCACAAATACTAG+AGG | + | chr7.4:32249327-32249346 | None:intergenic | 35.0% | |
| TGTGCAACTCAATTACAATC+AGG | - | chr7.4:32249446-32249465 | MS.gene87046:intron | 35.0% | |
| TTAACCGTTACTGATGTCAA+TGG | - | chr7.4:32248334-32248353 | MS.gene87046:intron | 35.0% | |
| TTAGATCACAAGCTCATAGT+AGG | - | chr7.4:32249288-32249307 | MS.gene87046:intron | 35.0% | |
| ! | ATGCGTTTAAAGGCTGATTT+GGG | + | chr7.4:32249635-32249654 | None:intergenic | 35.0% |
| !! | ACGGTTACGAGCATTTTAAT+TGG | - | chr7.4:32250445-32250464 | MS.gene87046:CDS | 35.0% |
| !! | CTTTAGAGTGTGTTCTCTTT+AGG | - | chr7.4:32249766-32249785 | MS.gene87046:intron | 35.0% |
| !! | GTTTGTGACTTTAAAGTCAG+AGG | - | chr7.4:32250225-32250244 | MS.gene87046:intron | 35.0% |
| !! | TTATAATGGACCGACCTATT+AGG | + | chr7.4:32248749-32248768 | None:intergenic | 35.0% |
| AAAAATCTTCTCGCCCACAT+TGG | - | chr7.4:32249938-32249957 | MS.gene87046:intron | 40.0% | |
| ACGACACTTTATTGGGTCAT+TGG | + | chr7.4:32249998-32250017 | None:intergenic | 40.0% | |
| AGGTCAAAGCACAAATGCTA+AGG | - | chr7.4:32250116-32250135 | MS.gene87046:intron | 40.0% | |
| ATAGATCGAGCCTAATAGGT+CGG | - | chr7.4:32248736-32248755 | MS.gene87046:intron | 40.0% | |
| ATTGACTATGCATGATCGGT+GGG | - | chr7.4:32250083-32250102 | MS.gene87046:intron | 40.0% | |
| CGACACTTTATTGGGTCATT+GGG | + | chr7.4:32249997-32250016 | None:intergenic | 40.0% | |
| GACACTTTATTGGGTCATTG+GGG | + | chr7.4:32249996-32250015 | None:intergenic | 40.0% | |
| GATGCGTTTAAAGGCTGATT+TGG | + | chr7.4:32249636-32249655 | None:intergenic | 40.0% | |
| GGATACGGAGTACAATATTG+AGG | + | chr7.4:32248268-32248287 | None:intergenic | 40.0% | |
| GTGGCATTAATCGTGATTCT+TGG | - | chr7.4:32250520-32250539 | MS.gene87046:CDS | 40.0% | |
| TGAACATACCTTACGACGTA+GGG | + | chr7.4:32248446-32248465 | None:intergenic | 40.0% | |
| TTCCACCTTCAATTAGCAGA+TGG | + | chr7.4:32249871-32249890 | None:intergenic | 40.0% | |
| TTGAACATACCTTACGACGT+AGG | + | chr7.4:32248447-32248466 | None:intergenic | 40.0% | |
| TTGAGCCATCTGCTAATTGA+AGG | - | chr7.4:32249863-32249882 | MS.gene87046:intron | 40.0% | |
| ! | AACGGTTAAGTTGTCTGCAA+TGG | + | chr7.4:32248323-32248342 | None:intergenic | 40.0% |
| ! | ATTTCTTGTAGTGGTGGTGT+AGG | - | chr7.4:32249736-32249755 | MS.gene87046:intron | 40.0% |
| ! | TATTGACTATGCATGATCGG+TGG | - | chr7.4:32250082-32250101 | MS.gene87046:intron | 40.0% |
| !! | ACTTTAAAGTCAGAGGCAGT+TGG | - | chr7.4:32250232-32250251 | MS.gene87046:intron | 40.0% |
| !! | TGCGTTTAAAGGCTGATTTG+GGG | + | chr7.4:32249634-32249653 | None:intergenic | 40.0% |
| AGCCATCTGCTAATTGAAGG+TGG | - | chr7.4:32249866-32249885 | MS.gene87046:intron | 45.0% | |
| ATATTGTACTCCGTATCCGG+TGG | - | chr7.4:32248270-32248289 | MS.gene87046:CDS | 45.0% | |
| CAATCAGGTCGGGTTATAGT+CGG | - | chr7.4:32249461-32249480 | MS.gene87046:intron | 45.0% | |
| CGATCTTGCACTGTTTATGC+TGG | - | chr7.4:32250261-32250280 | MS.gene87046:intron | 45.0% | |
| GGTGTATCAGTCTCAAACTC+AGG | - | chr7.4:32249338-32249357 | MS.gene87046:intron | 45.0% | |
| GTCTCAAACTCAGGTCATCA+AGG | - | chr7.4:32249347-32249366 | MS.gene87046:intron | 45.0% | |
| TGAGGACCTATTATGGTGGT+GGG | + | chr7.4:32248250-32248269 | None:intergenic | 45.0% | |
| TTGAGGACCTATTATGGTGG+TGG | + | chr7.4:32248251-32248270 | None:intergenic | 45.0% | |
| ! | AGTTAGCCCATATTGGCCTA+CGG | + | chr7.4:32249488-32249507 | None:intergenic | 45.0% |
| ! | GCAGAAGGTTGTGGTTGATA+AGG | + | chr7.4:32248205-32248224 | None:intergenic | 45.0% |
| ! | GCAGATGCACAAAAAGCACA+CGG | - | chr7.4:32250426-32250445 | MS.gene87046:CDS | 45.0% |
| !! | AGAAATGAAACGGGTTGGAC+TGG | - | chr7.4:32249261-32249280 | MS.gene87046:intron | 45.0% |
| !!! | ATTTCTATTTTTAATTTATT+TGG | + | chr7.4:32249247-32249266 | None:intergenic | 5.0% |
| GCCAATCTATGGGGACATGT+GGG | + | chr7.4:32249689-32249708 | None:intergenic | 50.0% | |
| GGAACTTGCGGTGGTGAAAA+AGG | - | chr7.4:32248291-32248310 | MS.gene87046:CDS | 50.0% | |
| TGCCAATCTATGGGGACATG+TGG | + | chr7.4:32249690-32249709 | None:intergenic | 50.0% | |
| TTACGACGTAGGGTGACGAT+GGG | + | chr7.4:32248436-32248455 | None:intergenic | 50.0% | |
| ! | GAGGACCTATTATGGTGGTG+GGG | + | chr7.4:32248249-32248268 | None:intergenic | 50.0% |
| ! | GTTAGCCCATATTGGCCTAC+GGG | + | chr7.4:32249487-32249506 | None:intergenic | 50.0% |
| ACCGCAAGTTCCACCGGATA+CGG | + | chr7.4:32248283-32248302 | None:intergenic | 55.0% | |
| CAAGACACGGTGGTCACGTA+TGG | + | chr7.4:32248395-32248414 | None:intergenic | 55.0% | |
| CATACGTGACCACCGTGTCT+TGG | - | chr7.4:32248393-32248412 | MS.gene87046:intron | 55.0% | |
| CATCGTCACCCTACGTCGTA+AGG | - | chr7.4:32248435-32248454 | MS.gene87046:intron | 55.0% | |
| CCACTCCCCACCACCATAAT+AGG | - | chr7.4:32248241-32248260 | MS.gene87046:CDS | 55.0% | |
| CTTACGACGTAGGGTGACGA+TGG | + | chr7.4:32248437-32248456 | None:intergenic | 55.0% | |
| GCCCACATGTCCCCATAGAT+TGG | - | chr7.4:32249685-32249704 | MS.gene87046:intron | 55.0% | |
| GGTGCAGATGCAGAAGGTTG+TGG | + | chr7.4:32248214-32248233 | None:intergenic | 55.0% | |
| TACGACGTAGGGTGACGATG+GGG | + | chr7.4:32248435-32248454 | None:intergenic | 55.0% | |
| TAGGGTGACGATGGGGTTAC+CGG | + | chr7.4:32248428-32248447 | None:intergenic | 55.0% | |
| TCCGTATCCGGTGGAACTTG+CGG | - | chr7.4:32248279-32248298 | MS.gene87046:CDS | 55.0% | |
| TTCACCACCGCAAGTTCCAC+CGG | + | chr7.4:32248289-32248308 | None:intergenic | 55.0% | |
| ! | GATCGGTGGGAAGCGTATAG+AGG | - | chr7.4:32250096-32250115 | MS.gene87046:intron | 55.0% |
| !! | ATTATGGTGGTGGGGAGTGG+TGG | + | chr7.4:32248241-32248260 | None:intergenic | 55.0% |
| !! | CCTATTATGGTGGTGGGGAG+TGG | + | chr7.4:32248244-32248263 | None:intergenic | 55.0% |
| AGTCGGCCCGTAGGCCAATA+TGG | - | chr7.4:32249478-32249497 | MS.gene87046:intron | 60.0% | |
| CGGCATCAACCAAGACACGG+TGG | + | chr7.4:32248405-32248424 | None:intergenic | 60.0% | |
| CGGCGGCATCAACCAAGACA+CGG | + | chr7.4:32248408-32248427 | None:intergenic | 60.0% | |
| GTATCCGGTGGAACTTGCGG+TGG | - | chr7.4:32248282-32248301 | MS.gene87046:CDS | 60.0% | |
| GTCGGCCCGTAGGCCAATAT+GGG | - | chr7.4:32249479-32249498 | MS.gene87046:intron | 60.0% | |
| TCGGGTTATAGTCGGCCCGT+AGG | - | chr7.4:32249469-32249488 | MS.gene87046:intron | 60.0% | |
| ! | CGTGTCTTGGTTGATGCCGC+CGG | - | chr7.4:32248406-32248425 | MS.gene87046:intron | 60.0% |
| !! | GGCATCGGTGCAGATGCAGA+AGG | + | chr7.4:32248220-32248239 | None:intergenic | 60.0% |
| GGTGACGATGGGGTTACCGG+CGG | + | chr7.4:32248425-32248444 | None:intergenic | 65.0% | |
| ! | GTGGTGGGGAGTGGTGGCAT+CGG | + | chr7.4:32248235-32248254 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 32248187 | 32250576 | 32248187 | ID=MS.gene87046 |
| chr7.4 | mRNA | 32248187 | 32250576 | 32248187 | ID=MS.gene87046.t1;Parent=MS.gene87046 |
| chr7.4 | exon | 32250325 | 32250576 | 32250325 | ID=MS.gene87046.t1.exon1;Parent=MS.gene87046.t1 |
| chr7.4 | CDS | 32250325 | 32250576 | 32250325 | ID=cds.MS.gene87046.t1;Parent=MS.gene87046.t1 |
| chr7.4 | exon | 32248455 | 32248682 | 32248455 | ID=MS.gene87046.t1.exon2;Parent=MS.gene87046.t1 |
| chr7.4 | CDS | 32248455 | 32248682 | 32248455 | ID=cds.MS.gene87046.t1;Parent=MS.gene87046.t1 |
| chr7.4 | exon | 32248187 | 32248333 | 32248187 | ID=MS.gene87046.t1.exon3;Parent=MS.gene87046.t1 |
| chr7.4 | CDS | 32248187 | 32248333 | 32248187 | ID=cds.MS.gene87046.t1;Parent=MS.gene87046.t1 |
| Gene Sequence |
| Protein sequence |
