Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87765.t1 | XP_003623539.1 | 93.8 | 226 | 14 | 0 | 1 | 226 | 1 | 226 | 1.70E-116 | 428.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87765.t1 | Q9LZX1 | 58.0 | 212 | 87 | 1 | 2 | 213 | 8 | 217 | 1.2e-70 | 267.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87765.t1 | G7KW21 | 93.8 | 226 | 14 | 0 | 1 | 226 | 1 | 226 | 1.2e-116 | 428.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene87043 | MS.gene87765 | PPI |
MS.gene99705 | MS.gene87765 | PPI |
MS.gene87765 | MS.gene42096 | PPI |
MS.gene91237 | MS.gene87765 | PPI |
MS.gene87765 | MS.gene99704 | PPI |
MS.gene87041 | MS.gene87765 | PPI |
MS.gene87765 | MS.gene87039 | PPI |
MS.gene87765 | MS.gene91238 | PPI |
MS.gene87765 | MS.gene25045 | PPI |
MS.gene87765 | MS.gene87041 | PPI |
MS.gene87765 | MS.gene87768 | PPI |
MS.gene87765 | MS.gene42848 | PPI |
MS.gene009719 | MS.gene87765 | PPI |
MS.gene87765 | MS.gene42099 | PPI |
MS.gene42103 | MS.gene87765 | PPI |
MS.gene42098 | MS.gene87765 | PPI |
MS.gene87765 | MS.gene87040 | PPI |
MS.gene87769 | MS.gene87765 | PPI |
MS.gene87765 | MS.gene87046 | PPI |
MS.gene87765 | MS.gene42097 | PPI |
MS.gene87765 | MS.gene81036 | PPI |
MS.gene87765 | MS.gene87762 | PPI |
MS.gene87765 | MS.gene42091 | PPI |
MS.gene26305 | MS.gene87765 | PPI |
MS.gene051028 | MS.gene87765 | PPI |
MS.gene87767 | MS.gene87765 | PPI |
MS.gene87765 | MS.gene87769 | PPI |
MS.gene87039 | MS.gene87765 | PPI |
MS.gene87765 | MS.gene87038 | PPI |
MS.gene87765 | MS.gene009718 | PPI |
MS.gene42848 | MS.gene87765 | PPI |
MS.gene87765 | MS.gene42100 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87765.t1 | MTR_7g072170 | 93.805 | 226 | 14 | 0 | 1 | 226 | 1 | 226 | 4.81e-162 | 447 |
MS.gene87765.t1 | MTR_7g072140 | 82.464 | 211 | 37 | 0 | 1 | 211 | 1 | 211 | 1.75e-132 | 372 |
MS.gene87765.t1 | MTR_7g072120 | 83.962 | 212 | 32 | 2 | 1 | 211 | 1 | 211 | 1.29e-131 | 369 |
MS.gene87765.t1 | MTR_7g072270 | 82.629 | 213 | 35 | 2 | 1 | 213 | 1 | 211 | 3.32e-131 | 368 |
MS.gene87765.t1 | MTR_7g072250 | 71.300 | 223 | 49 | 3 | 1 | 213 | 25 | 242 | 3.34e-110 | 316 |
MS.gene87765.t1 | MTR_7g072270 | 82.036 | 167 | 28 | 2 | 1 | 167 | 1 | 165 | 3.76e-100 | 288 |
MS.gene87765.t1 | MTR_4g029430 | 57.672 | 189 | 74 | 3 | 23 | 210 | 15 | 198 | 3.00e-75 | 226 |
MS.gene87765.t1 | MTR_7g071710 | 81.197 | 117 | 22 | 0 | 94 | 210 | 1 | 117 | 1.54e-71 | 214 |
MS.gene87765.t1 | MTR_1g014180 | 52.356 | 191 | 80 | 6 | 19 | 204 | 1 | 185 | 4.22e-58 | 182 |
MS.gene87765.t1 | MTR_1g014150 | 45.699 | 186 | 92 | 5 | 21 | 204 | 11 | 189 | 3.33e-46 | 152 |
MS.gene87765.t1 | MTR_1g014160 | 38.947 | 190 | 90 | 7 | 33 | 204 | 59 | 240 | 4.39e-28 | 107 |
MS.gene87765.t1 | MTR_5g074550 | 34.444 | 180 | 104 | 5 | 33 | 203 | 17 | 191 | 1.58e-25 | 99.0 |
MS.gene87765.t1 | MTR_2g103840 | 31.818 | 176 | 112 | 5 | 38 | 209 | 33 | 204 | 5.70e-24 | 95.5 |
MS.gene87765.t1 | MTR_4g010180 | 29.570 | 186 | 125 | 5 | 27 | 209 | 11 | 193 | 8.24e-24 | 94.7 |
MS.gene87765.t1 | MTR_5g074560 | 31.792 | 173 | 108 | 5 | 33 | 203 | 20 | 184 | 5.06e-20 | 84.3 |
MS.gene87765.t1 | MTR_2g103850 | 28.249 | 177 | 119 | 5 | 38 | 210 | 34 | 206 | 7.63e-19 | 82.0 |
MS.gene87765.t1 | MTR_0650s0010 | 28.646 | 192 | 126 | 5 | 28 | 209 | 12 | 202 | 3.18e-17 | 77.4 |
MS.gene87765.t1 | MTR_8g099000 | 28.042 | 189 | 116 | 7 | 36 | 206 | 45 | 231 | 1.56e-12 | 65.1 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene87765.t1 | AT5G01750 | 58.019 | 212 | 87 | 1 | 2 | 213 | 8 | 217 | 2.76e-96 | 280 |
MS.gene87765.t1 | AT3G11740 | 61.579 | 190 | 72 | 1 | 22 | 210 | 2 | 191 | 1.35e-87 | 257 |
MS.gene87765.t1 | AT2G14560 | 50.244 | 205 | 100 | 1 | 20 | 224 | 4 | 206 | 1.84e-73 | 222 |
MS.gene87765.t1 | AT2G14560 | 50.244 | 205 | 100 | 1 | 20 | 224 | 64 | 266 | 2.73e-72 | 221 |
MS.gene87765.t1 | AT1G33840 | 51.220 | 205 | 98 | 1 | 3 | 207 | 9 | 211 | 5.56e-72 | 219 |
MS.gene87765.t1 | AT5G01750 | 55.689 | 167 | 72 | 1 | 2 | 168 | 8 | 172 | 6.94e-70 | 211 |
MS.gene87765.t1 | AT2G14560 | 50.667 | 150 | 74 | 0 | 20 | 169 | 4 | 153 | 6.59e-56 | 176 |
MS.gene87765.t1 | AT2G14560 | 50.667 | 150 | 74 | 0 | 20 | 169 | 64 | 213 | 1.00e-54 | 175 |
MS.gene87765.t1 | AT1G33840 | 47.305 | 167 | 86 | 1 | 3 | 169 | 9 | 173 | 7.32e-53 | 169 |
MS.gene87765.t1 | AT3G16900 | 40.500 | 200 | 93 | 5 | 9 | 207 | 6 | 180 | 2.00e-48 | 157 |
MS.gene87765.t1 | AT3G56180 | 36.364 | 187 | 114 | 2 | 22 | 205 | 17 | 201 | 1.01e-36 | 128 |
MS.gene87765.t1 | AT3G56180 | 35.829 | 187 | 113 | 3 | 22 | 205 | 17 | 199 | 2.50e-34 | 122 |
MS.gene87765.t1 | AT3G10986 | 31.606 | 193 | 126 | 3 | 22 | 208 | 3 | 195 | 1.92e-28 | 106 |
MS.gene87765.t1 | AT3G15810 | 29.379 | 177 | 119 | 3 | 36 | 210 | 33 | 205 | 4.05e-25 | 98.6 |
MS.gene87765.t1 | AT1G80120 | 31.667 | 180 | 114 | 4 | 36 | 210 | 19 | 194 | 4.73e-19 | 82.4 |
MS.gene87765.t1 | AT2G30270 | 27.933 | 179 | 117 | 4 | 26 | 203 | 12 | 179 | 4.52e-17 | 76.3 |
MS.gene87765.t1 | AT2G05910 | 26.702 | 191 | 121 | 6 | 28 | 210 | 9 | 188 | 7.12e-16 | 73.6 |
MS.gene87765.t1 | AT2G38640 | 28.426 | 197 | 132 | 5 | 13 | 206 | 2 | 192 | 2.30e-15 | 72.0 |
MS.gene87765.t1 | AT5G20640 | 25.743 | 202 | 133 | 5 | 23 | 209 | 12 | 211 | 6.60e-15 | 71.2 |
Find 55 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AATATTGTCTTCAAAGTTAA+AGG | 0.212178 | 7.1:-29916299 | MS.gene87765:CDS |
TTTGGTCTTCAATTGCATTA+TGG | 0.249654 | 7.1:+29914573 | None:intergenic |
GTGCTTCCGACCACCATATT+TGG | 0.252354 | 7.1:-29916419 | MS.gene87765:CDS |
AGCAAGAAACACGTCTAATT+TGG | 0.276680 | 7.1:+29914555 | None:intergenic |
TGCTCCTTATCCATTGGATT+TGG | 0.320541 | 7.1:-29916384 | MS.gene87765:CDS |
ACAATATTGAGGGCCAAATA+TGG | 0.348290 | 7.1:+29916406 | None:intergenic |
GAAGAAAAGGGAAGTGAATC+AGG | 0.376536 | 7.1:-29912441 | MS.gene87765:CDS |
AATTGGTAAAGACCATTTCA+TGG | 0.379077 | 7.1:-29912535 | MS.gene87765:CDS |
GGATTTGGCTGTGGTCAAAA+AGG | 0.380756 | 7.1:-29916369 | MS.gene87765:CDS |
TGAGATTAACAGTGAAGAAA+AGG | 0.382281 | 7.1:-29912454 | MS.gene87765:CDS |
CTTCCGTGACCGACGTGTCT+TGG | 0.419981 | 7.1:-29916264 | MS.gene87765:CDS |
AACAATGTTGTTTGATTCAC+CGG | 0.422881 | 7.1:+29914459 | None:intergenic |
GAGATTAACAGTGAAGAAAA+GGG | 0.427156 | 7.1:-29912453 | MS.gene87765:CDS |
GTTTGATTCACCGGCATAAA+CGG | 0.431148 | 7.1:+29914468 | None:intergenic |
TTATCCATTGGATTTGGCTG+TGG | 0.433070 | 7.1:-29916378 | MS.gene87765:CDS |
TTGCGACGTAGGGTGGTGAT+AGG | 0.450531 | 7.1:+29916224 | None:intergenic |
GCAGATGGTTGTGGTTGATA+AGG | 0.458676 | 7.1:+29916461 | None:intergenic |
TGATCGGTGGGAAGGTTACA+TGG | 0.459420 | 7.1:-29914644 | MS.gene87765:CDS |
ATATTGTGCTCCTTATCCAT+TGG | 0.464020 | 7.1:-29916390 | MS.gene87765:CDS |
TGCCTCTACACCGCCGATGC+CGG | 0.467566 | 7.1:-29916441 | MS.gene87765:CDS |
ACTTCAAAGTCAAAGGTAGT+TGG | 0.472279 | 7.1:-29914507 | MS.gene87765:CDS |
ATGAAAGCATAATCAACATT+GGG | 0.484955 | 7.1:+29912501 | None:intergenic |
AATATGGTGGTCGGAAGCAC+CGG | 0.497490 | 7.1:+29916422 | None:intergenic |
ACAGCCAAATCCAATGGATA+AGG | 0.500918 | 7.1:+29916380 | None:intergenic |
TGTTGATTATGCTTTCATAG+TGG | 0.508319 | 7.1:-29912496 | MS.gene87765:CDS |
CACCGGCATCGGCGGTGTAG+AGG | 0.512915 | 7.1:+29916439 | None:intergenic |
TATGAAAGCATAATCAACAT+TGG | 0.516780 | 7.1:+29912500 | None:intergenic |
CGATCTTGCACCGTTTATGC+CGG | 0.523467 | 7.1:-29914478 | MS.gene87765:CDS |
ATCAAACAACATTGTTGCAC+AGG | 0.532488 | 7.1:-29914452 | MS.gene87765:intron |
GATAAACTGTGACCATGAAA+TGG | 0.538015 | 7.1:+29912523 | None:intergenic |
GTTTGTGACTTCAAAGTCAA+AGG | 0.540662 | 7.1:-29914514 | MS.gene87765:CDS |
GATAAGGAGCACAATATTGA+GGG | 0.542125 | 7.1:+29916396 | None:intergenic |
GGATAAGGAGCACAATATTG+AGG | 0.542921 | 7.1:+29916395 | None:intergenic |
TTGAAGGTACCTTGCGACGT+AGG | 0.551744 | 7.1:+29916213 | None:intergenic |
GTGGTCGGAAGCACCGGCAT+CGG | 0.553162 | 7.1:+29916428 | None:intergenic |
TGAAGGTACCTTGCGACGTA+GGG | 0.554387 | 7.1:+29916214 | None:intergenic |
GTCGGAAGCACCGGCATCGG+CGG | 0.554675 | 7.1:+29916431 | None:intergenic |
TTGACCACAGCCAAATCCAA+TGG | 0.558143 | 7.1:+29916374 | None:intergenic |
AGTGACTATGCATGATCGGT+GGG | 0.580863 | 7.1:-29914656 | MS.gene87765:CDS |
CAAGACACGTCGGTCACGGA+AGG | 0.584927 | 7.1:+29916265 | None:intergenic |
GGTGTAGAGGCAGATGGTTG+TGG | 0.592683 | 7.1:+29916452 | None:intergenic |
CAACCAAGACACGTCGGTCA+CGG | 0.603138 | 7.1:+29916261 | None:intergenic |
TGCGACGTAGGGTGGTGATA+GGG | 0.606682 | 7.1:+29916225 | None:intergenic |
TAGTGACTATGCATGATCGG+TGG | 0.614019 | 7.1:-29914657 | MS.gene87765:CDS |
ACTATGCATGATCGGTGGGA+AGG | 0.622514 | 7.1:-29914652 | MS.gene87765:CDS |
TGAGGGCCAAATATGGTGGT+CGG | 0.625346 | 7.1:+29916413 | None:intergenic |
AGGTACCTTGCGACGTAGGG+TGG | 0.633675 | 7.1:+29916217 | None:intergenic |
TATCACCACCCTACGTCGCA+AGG | 0.636481 | 7.1:-29916222 | MS.gene87765:intron |
ATCGGCGGTGTAGAGGCAGA+TGG | 0.638858 | 7.1:+29916446 | None:intergenic |
AGATAGTGACTATGCATGAT+CGG | 0.644746 | 7.1:-29914660 | MS.gene87765:CDS |
AAGGTGATAGCAATATCAGA+CGG | 0.662704 | 7.1:-29916350 | MS.gene87765:CDS |
ATATTGAGGGCCAAATATGG+TGG | 0.664652 | 7.1:+29916409 | None:intergenic |
GATCGGTGGGAAGGTTACAT+GGG | 0.664673 | 7.1:-29914643 | MS.gene87765:CDS |
TTCGTCGTCACTGATGTCAA+CGG | 0.672271 | 7.1:-29916323 | MS.gene87765:CDS |
CAGCATCAACCAAGACACGT+CGG | 0.749290 | 7.1:+29916255 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAATAATAATATGATAACA+TGG | + | chr7.1:29912894-29912913 | None:intergenic | 10.0% |
!! | ACTTATACTAATAATTATTA+GGG | - | chr7.1:29914721-29914740 | MS.gene87765:intron | 10.0% |
!! | ATTCTTATAATTTCAAAATA+GGG | + | chr7.1:29913651-29913670 | None:intergenic | 10.0% |
!! | TAAATAAAATAAATGTCATA+TGG | + | chr7.1:29914036-29914055 | None:intergenic | 10.0% |
!!! | AAAAAAAAAAATAGTTTGTT+TGG | + | chr7.1:29913811-29913830 | None:intergenic | 10.0% |
!!! | AAAAAAATCTATTTTTTTTC+CGG | - | chr7.1:29915739-29915758 | MS.gene87765:intron | 10.0% |
!!! | AAAAAATCTAATTTTTTTTC+CGG | + | chr7.1:29915161-29915180 | None:intergenic | 10.0% |
!!! | AAAAAGATTTTTAAAAATTC+TGG | - | chr7.1:29915269-29915288 | MS.gene87765:intron | 10.0% |
!!! | AAAAAGATTTTTAAAAATTC+TGG | + | chr7.1:29915288-29915269 | None:intergenic | 10.0% |
!!! | AATTCTTTTGTTTTTTTTTA+GGG | + | chr7.1:29913080-29913099 | None:intergenic | 10.0% |
!!! | CTGAATATTTTATTATTTTT+TGG | - | chr7.1:29915975-29915994 | MS.gene87765:intron | 10.0% |
!!! | CTGAATATTTTATTATTTTT+TGG | + | chr7.1:29915994-29915975 | None:intergenic | 10.0% |
!!! | GAAAAATTTTTTTTTTTACA+AGG | - | chr7.1:29916169-29916188 | MS.gene87765:intron | 10.0% |
!!! | TAATTCTTTTGTTTTTTTTT+AGG | + | chr7.1:29913081-29913100 | None:intergenic | 10.0% |
!!! | TGTAAAAAAAAAAATTTTTC+CGG | + | chr7.1:29916169-29916188 | None:intergenic | 10.0% |
!!! | TTTGGATTTTTTTATTTTTT+TGG | + | chr7.1:29914982-29915001 | None:intergenic | 10.0% |
!! | CATTCTTATAATTTCAAAAT+AGG | + | chr7.1:29913652-29913671 | None:intergenic | 15.0% |
!! | CCTTGTAAAAAAAAAAATTT+CGG | - | chr7.1:29914821-29914840 | MS.gene87765:intron | 15.0% |
!! | GACTTATACTAATAATTATT+AGG | - | chr7.1:29914720-29914739 | MS.gene87765:intron | 15.0% |
!!! | AAACCTAGATTATAAAATTT+TGG | - | chr7.1:29913617-29913636 | MS.gene87765:intron | 15.0% |
!!! | AGATTTTTTATAAAACATTC+TGG | - | chr7.1:29915346-29915365 | MS.gene87765:intron | 15.0% |
!!! | AGATTTTTTATAAAACATTC+TGG | + | chr7.1:29915365-29915346 | None:intergenic | 15.0% |
!!! | CATAAAAGTTGATTTAATTA+GGG | + | chr7.1:29916272-29916291 | None:intergenic | 15.0% |
!!! | CGAAATTTTTTTTTTTACAA+GGG | + | chr7.1:29914823-29914842 | None:intergenic | 15.0% |
!!! | GCAATATTTTATTAAAATTG+TGG | - | chr7.1:29915457-29915476 | MS.gene87765:intron | 15.0% |
!!! | TAGGCAAAAAAAATAATTTT+TGG | - | chr7.1:29915416-29915435 | MS.gene87765:intron | 15.0% |
!!! | TGAATGTTTTTATGATTTTT+TGG | - | chr7.1:29915841-29915860 | MS.gene87765:intron | 15.0% |
!!! | TTGAATGTTAGTATAAATTT+TGG | - | chr7.1:29913493-29913512 | MS.gene87765:intron | 15.0% |
!!! | TTTCCAAAATTTTATAATCT+AGG | + | chr7.1:29913623-29913642 | None:intergenic | 15.0% |
!!! | TTTTAAAAGAAATTCCAAAT+TGG | - | chr7.1:29913564-29913583 | MS.gene87765:intron | 15.0% |
!!! | TTTTTAAAAAAAATATGACC+TGG | - | chr7.1:29916034-29916053 | MS.gene87765:intron | 15.0% |
!!! | TTTTTTAAAAAAATATGACC+TGG | + | chr7.1:29914942-29914961 | None:intergenic | 15.0% |
!! | AAAAAATATAAGGACCAATT+TGG | + | chr7.1:29913581-29913600 | None:intergenic | 20.0% |
!! | AAACCTATTAAGATTGTATT+TGG | - | chr7.1:29915203-29915222 | MS.gene87765:intron | 20.0% |
!! | AATATTGTCTTCAAAGTTAA+AGG | - | chr7.1:29912578-29912597 | MS.gene87765:intron | 20.0% |
!! | ATGCATATCAATTAAAACTA+AGG | + | chr7.1:29913245-29913264 | None:intergenic | 20.0% |
!! | CCAAGTGATAATTAAATTAA+GGG | + | chr7.1:29914701-29914720 | None:intergenic | 20.0% |
!! | GAAAAAGATTTGAAAATGAA+AGG | - | chr7.1:29913727-29913746 | MS.gene87765:intron | 20.0% |
!! | TCCAAGTGATAATTAAATTA+AGG | + | chr7.1:29914702-29914721 | None:intergenic | 20.0% |
!! | TTTCCAAAAACAATCTTAAT+AGG | - | chr7.1:29915692-29915711 | MS.gene87765:intron | 20.0% |
!! | TTTCCAAATACAATCTTAAT+AGG | + | chr7.1:29915209-29915228 | None:intergenic | 20.0% |
!!! | AAAAAATAGTTTGTTTGGAT+AGG | + | chr7.1:29913806-29913825 | None:intergenic | 20.0% |
!!! | AAAAATAGTTTGTTTGGATA+GGG | + | chr7.1:29913805-29913824 | None:intergenic | 20.0% |
!!! | AAACCTATTAAGATTGTTTT+TGG | + | chr7.1:29915698-29915717 | None:intergenic | 20.0% |
!!! | ACTTGTTAAAGATTCAAAAA+AGG | + | chr7.1:29914653-29914672 | None:intergenic | 20.0% |
!!! | ATTCTAACAAAAATCCATTT+TGG | + | chr7.1:29915393-29915412 | None:intergenic | 20.0% |
!!! | CAAAGAAGAAATTTTATCTT+TGG | - | chr7.1:29914561-29914580 | MS.gene87765:CDS | 20.0% |
!!! | CCATAAAAGTTGATTTAATT+AGG | + | chr7.1:29916273-29916292 | None:intergenic | 20.0% |
!!! | CCGAAATTTTTTTTTTTACA+AGG | + | chr7.1:29914824-29914843 | None:intergenic | 20.0% |
!!! | CCTAATTAAATCAACTTTTA+TGG | - | chr7.1:29916270-29916289 | MS.gene87765:CDS | 20.0% |
!!! | TTAGTATAAATTTTGGAGAT+GGG | - | chr7.1:29913500-29913519 | MS.gene87765:intron | 20.0% |
!!! | TTCTAACAAAAATCCATTTT+GGG | + | chr7.1:29915392-29915411 | None:intergenic | 20.0% |
!!! | TTTCCAAAAGATTTTAAAAC+CGG | + | chr7.1:29915761-29915780 | None:intergenic | 20.0% |
!!! | TTTTTTTTTCTTTCTAATCG+TGG | + | chr7.1:29913441-29913460 | None:intergenic | 20.0% |
! | AAAACTAAATATTCGCTTGT+TGG | + | chr7.1:29914478-29914497 | None:intergenic | 25.0% |
! | AAGAATTCAAACTATGGAAA+AGG | + | chr7.1:29914128-29914147 | None:intergenic | 25.0% |
! | ACGTGTAAAAAAAAATTTCC+AGG | + | chr7.1:29916055-29916074 | None:intergenic | 25.0% |
! | ACTATTTGAATTCAATCAGT+TGG | - | chr7.1:29913975-29913994 | MS.gene87765:intron | 25.0% |
! | ACTTCTTAAAATGTGTCTTA+AGG | + | chr7.1:29914540-29914559 | None:intergenic | 25.0% |
! | ATCCAATAAAGTTGTACTAT+TGG | - | chr7.1:29914191-29914210 | MS.gene87765:intron | 25.0% |
! | CAAATACAGTTATAAAAGTG+AGG | - | chr7.1:29913312-29913331 | MS.gene87765:intron | 25.0% |
! | CCCTTAATTTAATTATCACT+TGG | - | chr7.1:29914698-29914717 | MS.gene87765:intron | 25.0% |
! | CTTCTTAAAATGTGTCTTAA+GGG | + | chr7.1:29914539-29914558 | None:intergenic | 25.0% |
! | TAAAAGAGTTAACGAGTTAA+AGG | + | chr7.1:29914152-29914171 | None:intergenic | 25.0% |
! | TCACCTAAGAATAAAACTAT+GGG | - | chr7.1:29913916-29913935 | MS.gene87765:intron | 25.0% |
! | TTCACCTAAGAATAAAACTA+TGG | - | chr7.1:29913915-29913934 | MS.gene87765:intron | 25.0% |
!! | ATGAAAGCATAATCAACATT+GGG | + | chr7.1:29916379-29916398 | None:intergenic | 25.0% |
!! | GGATTTTTGTTAGAATCATT+AGG | - | chr7.1:29915397-29915416 | MS.gene87765:intron | 25.0% |
!! | TATGAAAGCATAATCAACAT+TGG | + | chr7.1:29916380-29916399 | None:intergenic | 25.0% |
!! | TCTAACAAAAATCCATTTTG+GGG | + | chr7.1:29915391-29915410 | None:intergenic | 25.0% |
!!! | GTTAGTATAAATTTTGGAGA+TGG | - | chr7.1:29913499-29913518 | MS.gene87765:intron | 25.0% |
!!! | TGGAAATTTTTTTTTACACG+TGG | - | chr7.1:29916054-29916073 | MS.gene87765:intron | 25.0% |
!!! | TTACTTGATGAAGTTTTGTT+GGG | - | chr7.1:29916460-29916479 | MS.gene87765:CDS | 25.0% |
!!! | TTTCCGGTTTTAAAATCTTT+TGG | - | chr7.1:29915755-29915774 | MS.gene87765:intron | 25.0% |
!!! | TTTTTTTTATGTTAACCCTC+CGG | - | chr7.1:29913823-29913842 | MS.gene87765:intron | 25.0% |
AAAGGCAAGAATTCAAACTA+TGG | + | chr7.1:29914134-29914153 | None:intergenic | 30.0% | |
AATTGGTAAAGACCATTTCA+TGG | - | chr7.1:29916342-29916361 | MS.gene87765:CDS | 30.0% | |
ACAGTTATAAAAGTGAGGTT+GGG | - | chr7.1:29913317-29913336 | MS.gene87765:intron | 30.0% | |
AGCTCCATTATCTTAAAAAC+CGG | + | chr7.1:29913845-29913864 | None:intergenic | 30.0% | |
ATAAGAGAGAATAACGTTGA+AGG | + | chr7.1:29912683-29912702 | None:intergenic | 30.0% | |
CACCAATAGTACAACTTTAT+TGG | + | chr7.1:29914196-29914215 | None:intergenic | 30.0% | |
CACGTGTAAAAAAAATTTCC+AGG | - | chr7.1:29914921-29914940 | MS.gene87765:intron | 30.0% | |
GAGATTAACAGTGAAGAAAA+GGG | - | chr7.1:29916424-29916443 | MS.gene87765:CDS | 30.0% | |
TACAGTTATAAAAGTGAGGT+TGG | - | chr7.1:29913316-29913335 | MS.gene87765:intron | 30.0% | |
TGAGATTAACAGTGAAGAAA+AGG | - | chr7.1:29916423-29916442 | MS.gene87765:CDS | 30.0% | |
! | AACAATGTTGTTTGATTCAC+CGG | + | chr7.1:29914421-29914440 | None:intergenic | 30.0% |
! | AATCAAACCGGAATTTTTAC+AGG | - | chr7.1:29916197-29916216 | MS.gene87765:intron | 30.0% |
! | AATCAAACCGGAATTTTTAC+AGG | + | chr7.1:29916216-29916197 | None:intergenic | 30.0% |
! | ACTGTTCAGAGTCTTTTAAT+TGG | - | chr7.1:29916325-29916344 | MS.gene87765:CDS | 30.0% |
! | ATCAAACCGGAATTTTTACA+GGG | - | chr7.1:29916198-29916217 | MS.gene87765:intron | 30.0% |
! | ATCAAACCGGAATTTTTACA+GGG | + | chr7.1:29916217-29916198 | None:intergenic | 30.0% |
! | ATTTTTCACCCCTGTAATAT+AGG | - | chr7.1:29914752-29914771 | MS.gene87765:intron | 30.0% |
! | TATTCGCTTGTTGGTTATAT+AGG | + | chr7.1:29914469-29914488 | None:intergenic | 30.0% |
! | TGTTGATTATGCTTTCATAG+TGG | - | chr7.1:29916381-29916400 | MS.gene87765:CDS | 30.0% |
! | TTTGGTCTTCAATTGCATTA+TGG | + | chr7.1:29914307-29914326 | None:intergenic | 30.0% |
!! | CTTACTTGATGAAGTTTTGT+TGG | - | chr7.1:29916459-29916478 | MS.gene87765:CDS | 30.0% |
!!! | AGACCCATAGTTTTATTCTT+AGG | + | chr7.1:29913922-29913941 | None:intergenic | 30.0% |
!!! | CTGGAAATTTTTTTTACACG+TGG | + | chr7.1:29914923-29914942 | None:intergenic | 30.0% |
!!! | TACTTGATGAAGTTTTGTTG+GGG | - | chr7.1:29916461-29916480 | MS.gene87765:CDS | 30.0% |
AAATATTACCCCCTCTTAGT+CGG | + | chr7.1:29913404-29913423 | None:intergenic | 35.0% | |
AAGGTGATAGCAATATCAGA+CGG | - | chr7.1:29912527-29912546 | MS.gene87765:CDS | 35.0% | |
ACAATATTGAGGGCCAAATA+TGG | + | chr7.1:29912474-29912493 | None:intergenic | 35.0% | |
ACCTTGATATGTCATACTGT+CGG | + | chr7.1:29913374-29913393 | None:intergenic | 35.0% | |
ACTTCAAAGTCAAAGGTAGT+TGG | - | chr7.1:29914370-29914389 | MS.gene87765:intron | 35.0% | |
AGATAGTGACTATGCATGAT+CGG | - | chr7.1:29914217-29914236 | MS.gene87765:intron | 35.0% | |
AGCAAGAAACACGTCTAATT+TGG | + | chr7.1:29914325-29914344 | None:intergenic | 35.0% | |
ATATTGTGCTCCTTATCCAT+TGG | - | chr7.1:29912487-29912506 | MS.gene87765:CDS | 35.0% | |
ATCAAACAACATTGTTGCAC+AGG | - | chr7.1:29914425-29914444 | MS.gene87765:intron | 35.0% | |
CCATTATCTTAAAAACCGGA+GGG | + | chr7.1:29913841-29913860 | None:intergenic | 35.0% | |
GATAAACTGTGACCATGAAA+TGG | + | chr7.1:29916357-29916376 | None:intergenic | 35.0% | |
GTTTGTGACTTCAAAGTCAA+AGG | - | chr7.1:29914363-29914382 | MS.gene87765:intron | 35.0% | |
GTTTGTTTGGATAGGGTAAT+GGG | + | chr7.1:29913798-29913817 | None:intergenic | 35.0% | |
TCCATTATCTTAAAAACCGG+AGG | + | chr7.1:29913842-29913861 | None:intergenic | 35.0% | |
! | AGTTTGTTTGGATAGGGTAA+TGG | + | chr7.1:29913799-29913818 | None:intergenic | 35.0% |
! | ATAATGGAGCTCTCATAGTT+TGG | - | chr7.1:29913854-29913873 | MS.gene87765:intron | 35.0% |
! | CTTTCTAATCGTGGCATTTT+CGG | + | chr7.1:29913432-29913451 | None:intergenic | 35.0% |
! | GATAAGGAGCACAATATTGA+GGG | + | chr7.1:29912484-29912503 | None:intergenic | 35.0% |
! | GTTTTTCACCCCTGTAATAT+AGG | + | chr7.1:29916241-29916260 | None:intergenic | 35.0% |
! | TACAAGGGCATAAATCAAAC+CGG | + | chr7.1:29914808-29914827 | None:intergenic | 35.0% |
! | TCAAACCGGAATTTTTACAG+GGG | - | chr7.1:29916199-29916218 | MS.gene87765:intron | 35.0% |
! | TCAAACCGGAATTTTTACAG+GGG | + | chr7.1:29916218-29916199 | None:intergenic | 35.0% |
!! | TACAAGGGCATTAATCAAAC+CGG | - | chr7.1:29916185-29916204 | MS.gene87765:intron | 35.0% |
!!! | ACTTGATGAAGTTTTGTTGG+GGG | - | chr7.1:29916462-29916481 | MS.gene87765:CDS | 35.0% |
ACAGCCAAATCCAATGGATA+AGG | + | chr7.1:29912500-29912519 | None:intergenic | 40.0% | |
AGGTTCAAATTCCGACTAAG+AGG | - | chr7.1:29913390-29913409 | MS.gene87765:intron | 40.0% | |
ATATTGAGGGCCAAATATGG+TGG | + | chr7.1:29912471-29912490 | None:intergenic | 40.0% | |
CCTGTAATATAGGCCATTTC+CGG | - | chr7.1:29914762-29914781 | MS.gene87765:intron | 40.0% | |
CCTGTAATATAGGCCATTTC+CGG | + | chr7.1:29914781-29914762 | None:intergenic | 40.0% | |
CCTTGATATGTCATACTGTC+GGG | + | chr7.1:29913373-29913392 | None:intergenic | 40.0% | |
CGGAAATGGCCTATATTACA+GGG | - | chr7.1:29916229-29916248 | MS.gene87765:CDS | 40.0% | |
CGGAAATGGCCTATATTACA+GGG | + | chr7.1:29916248-29916229 | None:intergenic | 40.0% | |
GAAGAAAAGGGAAGTGAATC+AGG | - | chr7.1:29916436-29916455 | MS.gene87765:CDS | 40.0% | |
GGAAATGGCCTATATTACAG+GGG | - | chr7.1:29916230-29916249 | MS.gene87765:CDS | 40.0% | |
GGAAATGGCCTATATTACAG+GGG | + | chr7.1:29916249-29916230 | None:intergenic | 40.0% | |
GGTTCAAATTCCGACTAAGA+GGG | - | chr7.1:29913391-29913410 | MS.gene87765:intron | 40.0% | |
GTCTTACTATAGCCCCAAAA+TGG | - | chr7.1:29915376-29915395 | MS.gene87765:intron | 40.0% | |
GTTCAAATTCCGACTAAGAG+GGG | - | chr7.1:29913392-29913411 | MS.gene87765:intron | 40.0% | |
GTTTGATTCACCGGCATAAA+CGG | + | chr7.1:29914412-29914431 | None:intergenic | 40.0% | |
TACCTAATGACGAATCGTTC+AGG | + | chr7.1:29913945-29913964 | None:intergenic | 40.0% | |
TATAAAAGTGAGGTTGGGTG+AGG | - | chr7.1:29913322-29913341 | MS.gene87765:intron | 40.0% | |
TCATGCTAACAAGTGCTCTT+AGG | + | chr7.1:29914678-29914697 | None:intergenic | 40.0% | |
TGCTCCTTATCCATTGGATT+TGG | - | chr7.1:29912493-29912512 | MS.gene87765:CDS | 40.0% | |
TTATCCATTGGATTTGGCTG+TGG | - | chr7.1:29912499-29912518 | MS.gene87765:CDS | 40.0% | |
TTCAAATTCCGACTAAGAGG+GGG | - | chr7.1:29913393-29913412 | MS.gene87765:intron | 40.0% | |
TTTCGCCCCTGTAAAAATTC+CGG | - | chr7.1:29914786-29914805 | MS.gene87765:intron | 40.0% | |
TTTCGCCCCTGTAAAAATTC+CGG | + | chr7.1:29914805-29914786 | None:intergenic | 40.0% | |
! | ATTTTTACAGGGGCGAAAAC+CGG | - | chr7.1:29916209-29916228 | MS.gene87765:intron | 40.0% |
! | ATTTTTACAGGGGCGAAAAC+CGG | + | chr7.1:29916228-29916209 | None:intergenic | 40.0% |
! | GGATAAGGAGCACAATATTG+AGG | + | chr7.1:29912485-29912504 | None:intergenic | 40.0% |
!!! | CCCTCCGGTTTTTAAGATAA+TGG | - | chr7.1:29913838-29913857 | MS.gene87765:intron | 40.0% |
!!! | CTTGATGAAGTTTTGTTGGG+GGG | - | chr7.1:29916463-29916482 | MS.gene87765:CDS | 40.0% |
AGTGACTATGCATGATCGGT+GGG | - | chr7.1:29914221-29914240 | MS.gene87765:intron | 45.0% | |
CCCGACAGTATGACATATCA+AGG | - | chr7.1:29913370-29913389 | MS.gene87765:intron | 45.0% | |
CCGGAAATGGCCTATATTAC+AGG | - | chr7.1:29916228-29916247 | MS.gene87765:CDS | 45.0% | |
CCGGAAATGGCCTATATTAC+AGG | + | chr7.1:29916247-29916228 | None:intergenic | 45.0% | |
CTCCTGAACGATTCGTCATT+AGG | - | chr7.1:29913940-29913959 | MS.gene87765:intron | 45.0% | |
GGATTTGGCTGTGGTCAAAA+AGG | - | chr7.1:29912508-29912527 | MS.gene87765:CDS | 45.0% | |
TAGTGACTATGCATGATCGG+TGG | - | chr7.1:29914220-29914239 | MS.gene87765:intron | 45.0% | |
TTCGTCGTCACTGATGTCAA+CGG | - | chr7.1:29912554-29912573 | MS.gene87765:CDS | 45.0% | |
TTGACCACAGCCAAATCCAA+TGG | + | chr7.1:29912506-29912525 | None:intergenic | 45.0% | |
! | GCAGATGGTTGTGGTTGATA+AGG | + | chr7.1:29912419-29912438 | None:intergenic | 45.0% |
!! | TTTGAAAAAAAAAAAATATA+AGG | + | chr7.1:29913591-29913610 | None:intergenic | 5.0% |
!!! | AAAAATTTTTTTTTTTACAA+GGG | - | chr7.1:29916170-29916189 | MS.gene87765:intron | 5.0% |
!!! | AATTTCTTTTAAAAATTTAT+AGG | + | chr7.1:29913558-29913577 | None:intergenic | 5.0% |
!!! | AATTTTCAAAATTAAAAAAA+AGG | + | chr7.1:29915580-29915599 | None:intergenic | 5.0% |
!!! | AATTTTCAAATTTAAAAAAA+AGG | - | chr7.1:29915321-29915340 | MS.gene87765:intron | 5.0% |
!!! | TGTATTTTTAAAATTTAAAA+AGG | - | chr7.1:29913527-29913546 | MS.gene87765:intron | 5.0% |
!!! | TTTTAAATTTTAAAAATACA+GGG | + | chr7.1:29913527-29913546 | None:intergenic | 5.0% |
!!! | TTTTTAAATTTTAAAAATAC+AGG | + | chr7.1:29913528-29913547 | None:intergenic | 5.0% |
!!! | TTTTTATTTTTATGATTTTT+TGG | - | chr7.1:29915917-29915936 | MS.gene87765:intron | 5.0% |
!!! | TTTTTATTTTTATGATTTTT+TGG | + | chr7.1:29915936-29915917 | None:intergenic | 5.0% |
!!! | TTTTTATTTTTTTTATTTTC+TGG | - | chr7.1:29915944-29915963 | MS.gene87765:intron | 5.0% |
!!! | TTTTTTAAAAAATTTAAAAC+CGG | - | chr7.1:29915139-29915158 | MS.gene87765:intron | 5.0% |
ACTATGCATGATCGGTGGGA+AGG | - | chr7.1:29914225-29914244 | MS.gene87765:intron | 50.0% | |
AGTCAGCGAATCTGCTGAGT+TGG | + | chr7.1:29914864-29914883 | None:intergenic | 50.0% | |
CAGCATCAACCAAGACACGT+CGG | + | chr7.1:29912625-29912644 | None:intergenic | 50.0% | |
CGATCTTGCACCGTTTATGC+CGG | - | chr7.1:29914399-29914418 | MS.gene87765:intron | 50.0% | |
GATCGGTGGGAAGGTTACAT+GGG | - | chr7.1:29914234-29914253 | MS.gene87765:intron | 50.0% | |
GTGCTTCCGACCACCATATT+TGG | - | chr7.1:29912458-29912477 | MS.gene87765:CDS | 50.0% | |
TGAGGATTGAGTGTAGCGCA+AGG | - | chr7.1:29913340-29913359 | MS.gene87765:intron | 50.0% | |
TGAGGGCCAAATATGGTGGT+CGG | + | chr7.1:29912467-29912486 | None:intergenic | 50.0% | |
TGATCGGTGGGAAGGTTACA+TGG | - | chr7.1:29914233-29914252 | MS.gene87765:intron | 50.0% | |
! | AATATGGTGGTCGGAAGCAC+CGG | + | chr7.1:29912458-29912477 | None:intergenic | 50.0% |
! | ACTCAGCAGATTCGCTGACT+TGG | - | chr7.1:29914864-29914883 | MS.gene87765:intron | 50.0% |
! | AGCGAATCTGCTGAGTTGGA+GGG | - | chr7.1:29916129-29916148 | MS.gene87765:intron | 50.0% |
! | AGCGAATCTGCTGAGTTGGA+GGG | + | chr7.1:29916148-29916129 | None:intergenic | 50.0% |
!! | TGAAGGTACCTTGCGACGTA+GGG | + | chr7.1:29912666-29912685 | None:intergenic | 50.0% |
!! | TTGAAGGTACCTTGCGACGT+AGG | + | chr7.1:29912667-29912686 | None:intergenic | 50.0% |
ACAGGGGCGAAAACCGGAAA+TGG | - | chr7.1:29916215-29916234 | MS.gene87765:intron | 55.0% | |
ACAGGGGCGAAAACCGGAAA+TGG | + | chr7.1:29916234-29916215 | None:intergenic | 55.0% | |
ACTCAGCAGATTCGCTGACG+TGG | + | chr7.1:29916125-29916144 | None:intergenic | 55.0% | |
CAACCAAGACACGTCGGTCA+CGG | + | chr7.1:29912619-29912638 | None:intergenic | 55.0% | |
CGTCAGCGAATCTGCTGAGT+TGG | - | chr7.1:29916125-29916144 | MS.gene87765:intron | 55.0% | |
GGTGTAGAGGCAGATGGTTG+TGG | + | chr7.1:29912428-29912447 | None:intergenic | 55.0% | |
TATCACCACCCTACGTCGCA+AGG | - | chr7.1:29912655-29912674 | MS.gene87765:intron | 55.0% | |
TGCGACGTAGGGTGGTGATA+GGG | + | chr7.1:29912655-29912674 | None:intergenic | 55.0% | |
TTGCGACGTAGGGTGGTGAT+AGG | + | chr7.1:29912656-29912675 | None:intergenic | 55.0% | |
! | CAGCGAATCTGCTGAGTTGG+AGG | - | chr7.1:29916128-29916147 | MS.gene87765:intron | 55.0% |
! | CAGCGAATCTGCTGAGTTGG+AGG | + | chr7.1:29916147-29916128 | None:intergenic | 55.0% |
! | CGAATCTGCTGAGTTGGAGG+GGG | - | chr7.1:29916131-29916150 | MS.gene87765:intron | 55.0% |
! | CGAATCTGCTGAGTTGGAGG+GGG | + | chr7.1:29916150-29916131 | None:intergenic | 55.0% |
! | GAATCTGCTGAGTTGGAGGG+GGG | - | chr7.1:29916132-29916151 | MS.gene87765:intron | 55.0% |
! | GCGAATCTGCTGAGTTGGAG+GGG | - | chr7.1:29916130-29916149 | MS.gene87765:intron | 55.0% |
! | GCGAATCTGCTGAGTTGGAG+GGG | + | chr7.1:29916149-29916130 | None:intergenic | 55.0% |
AGGTACCTTGCGACGTAGGG+TGG | + | chr7.1:29912663-29912682 | None:intergenic | 60.0% | |
ATCGGCGGTGTAGAGGCAGA+TGG | + | chr7.1:29912434-29912453 | None:intergenic | 60.0% | |
CAAGACACGTCGGTCACGGA+AGG | + | chr7.1:29912615-29912634 | None:intergenic | 60.0% | |
CTTCCGTGACCGACGTGTCT+TGG | - | chr7.1:29912613-29912632 | MS.gene87765:intron | 60.0% | |
! | ATCTGCTGAGTTGGAGGGGG+AGG | + | chr7.1:29916153-29916134 | None:intergenic | 60.0% |
! | TCTGCTGAGTTGGAGGGGGA+GGG | + | chr7.1:29914854-29914873 | None:intergenic | 60.0% |
TGCCTCTACACCGCCGATGC+CGG | - | chr7.1:29912436-29912455 | MS.gene87765:CDS | 65.0% | |
! | CTGCTGAGTTGGAGGGGGAG+GGG | + | chr7.1:29914853-29914872 | None:intergenic | 65.0% |
! | CTGCTGAGTTGGAGGGGGGA+GGG | - | chr7.1:29916136-29916155 | MS.gene87765:intron | 65.0% |
! | TCTGCTGAGTTGGAGGGGGG+AGG | - | chr7.1:29916135-29916154 | MS.gene87765:intron | 65.0% |
! | TGCTGAGTTGGAGGGGGGAG+GGG | - | chr7.1:29916137-29916156 | MS.gene87765:intron | 65.0% |
!! | GTGGTCGGAAGCACCGGCAT+CGG | + | chr7.1:29912452-29912471 | None:intergenic | 65.0% |
!! | TCGCTGACGTGGCGCTGACT+TGG | + | chr7.1:29916114-29916133 | None:intergenic | 65.0% |
!!! | GAGGGGGGAGGGGTGTTTTC+CGG | - | chr7.1:29916147-29916166 | MS.gene87765:intron | 65.0% |
!! | CACCGGCATCGGCGGTGTAG+AGG | + | chr7.1:29912441-29912460 | None:intergenic | 70.0% |
!! | GTCGGAAGCACCGGCATCGG+CGG | + | chr7.1:29912449-29912468 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.1 | gene | 29912407 | 29916492 | 29912407 | ID=MS.gene87765 |
chr7.1 | mRNA | 29912407 | 29916492 | 29912407 | ID=MS.gene87765.t1;Parent=MS.gene87765 |
chr7.1 | exon | 29916223 | 29916492 | 29916223 | ID=MS.gene87765.t1.exon1;Parent=MS.gene87765.t1 |
chr7.1 | CDS | 29916223 | 29916492 | 29916223 | ID=cds.MS.gene87765.t1;Parent=MS.gene87765.t1 |
chr7.1 | exon | 29914453 | 29914680 | 29914453 | ID=MS.gene87765.t1.exon2;Parent=MS.gene87765.t1 |
chr7.1 | CDS | 29914453 | 29914680 | 29914453 | ID=cds.MS.gene87765.t1;Parent=MS.gene87765.t1 |
chr7.1 | exon | 29912407 | 29912589 | 29912407 | ID=MS.gene87765.t1.exon3;Parent=MS.gene87765.t1 |
chr7.1 | CDS | 29912407 | 29912589 | 29912407 | ID=cds.MS.gene87765.t1;Parent=MS.gene87765.t1 |
Gene Sequence |
Protein sequence |