AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene87765


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87765.t1 MTR_7g072170 93.805 226 14 0 1 226 1 226 4.81e-162 447
MS.gene87765.t1 MTR_7g072140 82.464 211 37 0 1 211 1 211 1.75e-132 372
MS.gene87765.t1 MTR_7g072120 83.962 212 32 2 1 211 1 211 1.29e-131 369
MS.gene87765.t1 MTR_7g072270 82.629 213 35 2 1 213 1 211 3.32e-131 368
MS.gene87765.t1 MTR_7g072250 71.300 223 49 3 1 213 25 242 3.34e-110 316
MS.gene87765.t1 MTR_7g072270 82.036 167 28 2 1 167 1 165 3.76e-100 288
MS.gene87765.t1 MTR_4g029430 57.672 189 74 3 23 210 15 198 3.00e-75 226
MS.gene87765.t1 MTR_7g071710 81.197 117 22 0 94 210 1 117 1.54e-71 214
MS.gene87765.t1 MTR_1g014180 52.356 191 80 6 19 204 1 185 4.22e-58 182
MS.gene87765.t1 MTR_1g014150 45.699 186 92 5 21 204 11 189 3.33e-46 152
MS.gene87765.t1 MTR_1g014160 38.947 190 90 7 33 204 59 240 4.39e-28 107
MS.gene87765.t1 MTR_5g074550 34.444 180 104 5 33 203 17 191 1.58e-25 99.0
MS.gene87765.t1 MTR_2g103840 31.818 176 112 5 38 209 33 204 5.70e-24 95.5
MS.gene87765.t1 MTR_4g010180 29.570 186 125 5 27 209 11 193 8.24e-24 94.7
MS.gene87765.t1 MTR_5g074560 31.792 173 108 5 33 203 20 184 5.06e-20 84.3
MS.gene87765.t1 MTR_2g103850 28.249 177 119 5 38 210 34 206 7.63e-19 82.0
MS.gene87765.t1 MTR_0650s0010 28.646 192 126 5 28 209 12 202 3.18e-17 77.4
MS.gene87765.t1 MTR_8g099000 28.042 189 116 7 36 206 45 231 1.56e-12 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene87765.t1 AT5G01750 58.019 212 87 1 2 213 8 217 2.76e-96 280
MS.gene87765.t1 AT3G11740 61.579 190 72 1 22 210 2 191 1.35e-87 257
MS.gene87765.t1 AT2G14560 50.244 205 100 1 20 224 4 206 1.84e-73 222
MS.gene87765.t1 AT2G14560 50.244 205 100 1 20 224 64 266 2.73e-72 221
MS.gene87765.t1 AT1G33840 51.220 205 98 1 3 207 9 211 5.56e-72 219
MS.gene87765.t1 AT5G01750 55.689 167 72 1 2 168 8 172 6.94e-70 211
MS.gene87765.t1 AT2G14560 50.667 150 74 0 20 169 4 153 6.59e-56 176
MS.gene87765.t1 AT2G14560 50.667 150 74 0 20 169 64 213 1.00e-54 175
MS.gene87765.t1 AT1G33840 47.305 167 86 1 3 169 9 173 7.32e-53 169
MS.gene87765.t1 AT3G16900 40.500 200 93 5 9 207 6 180 2.00e-48 157
MS.gene87765.t1 AT3G56180 36.364 187 114 2 22 205 17 201 1.01e-36 128
MS.gene87765.t1 AT3G56180 35.829 187 113 3 22 205 17 199 2.50e-34 122
MS.gene87765.t1 AT3G10986 31.606 193 126 3 22 208 3 195 1.92e-28 106
MS.gene87765.t1 AT3G15810 29.379 177 119 3 36 210 33 205 4.05e-25 98.6
MS.gene87765.t1 AT1G80120 31.667 180 114 4 36 210 19 194 4.73e-19 82.4
MS.gene87765.t1 AT2G30270 27.933 179 117 4 26 203 12 179 4.52e-17 76.3
MS.gene87765.t1 AT2G05910 26.702 191 121 6 28 210 9 188 7.12e-16 73.6
MS.gene87765.t1 AT2G38640 28.426 197 132 5 13 206 2 192 2.30e-15 72.0
MS.gene87765.t1 AT5G20640 25.743 202 133 5 23 209 12 211 6.60e-15 71.2

Find 55 sgRNAs with CRISPR-Local

Find 220 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATATTGTCTTCAAAGTTAA+AGG 0.212178 7.1:-29916299 MS.gene87765:CDS
TTTGGTCTTCAATTGCATTA+TGG 0.249654 7.1:+29914573 None:intergenic
GTGCTTCCGACCACCATATT+TGG 0.252354 7.1:-29916419 MS.gene87765:CDS
AGCAAGAAACACGTCTAATT+TGG 0.276680 7.1:+29914555 None:intergenic
TGCTCCTTATCCATTGGATT+TGG 0.320541 7.1:-29916384 MS.gene87765:CDS
ACAATATTGAGGGCCAAATA+TGG 0.348290 7.1:+29916406 None:intergenic
GAAGAAAAGGGAAGTGAATC+AGG 0.376536 7.1:-29912441 MS.gene87765:CDS
AATTGGTAAAGACCATTTCA+TGG 0.379077 7.1:-29912535 MS.gene87765:CDS
GGATTTGGCTGTGGTCAAAA+AGG 0.380756 7.1:-29916369 MS.gene87765:CDS
TGAGATTAACAGTGAAGAAA+AGG 0.382281 7.1:-29912454 MS.gene87765:CDS
CTTCCGTGACCGACGTGTCT+TGG 0.419981 7.1:-29916264 MS.gene87765:CDS
AACAATGTTGTTTGATTCAC+CGG 0.422881 7.1:+29914459 None:intergenic
GAGATTAACAGTGAAGAAAA+GGG 0.427156 7.1:-29912453 MS.gene87765:CDS
GTTTGATTCACCGGCATAAA+CGG 0.431148 7.1:+29914468 None:intergenic
TTATCCATTGGATTTGGCTG+TGG 0.433070 7.1:-29916378 MS.gene87765:CDS
TTGCGACGTAGGGTGGTGAT+AGG 0.450531 7.1:+29916224 None:intergenic
GCAGATGGTTGTGGTTGATA+AGG 0.458676 7.1:+29916461 None:intergenic
TGATCGGTGGGAAGGTTACA+TGG 0.459420 7.1:-29914644 MS.gene87765:CDS
ATATTGTGCTCCTTATCCAT+TGG 0.464020 7.1:-29916390 MS.gene87765:CDS
TGCCTCTACACCGCCGATGC+CGG 0.467566 7.1:-29916441 MS.gene87765:CDS
ACTTCAAAGTCAAAGGTAGT+TGG 0.472279 7.1:-29914507 MS.gene87765:CDS
ATGAAAGCATAATCAACATT+GGG 0.484955 7.1:+29912501 None:intergenic
AATATGGTGGTCGGAAGCAC+CGG 0.497490 7.1:+29916422 None:intergenic
ACAGCCAAATCCAATGGATA+AGG 0.500918 7.1:+29916380 None:intergenic
TGTTGATTATGCTTTCATAG+TGG 0.508319 7.1:-29912496 MS.gene87765:CDS
CACCGGCATCGGCGGTGTAG+AGG 0.512915 7.1:+29916439 None:intergenic
TATGAAAGCATAATCAACAT+TGG 0.516780 7.1:+29912500 None:intergenic
CGATCTTGCACCGTTTATGC+CGG 0.523467 7.1:-29914478 MS.gene87765:CDS
ATCAAACAACATTGTTGCAC+AGG 0.532488 7.1:-29914452 MS.gene87765:intron
GATAAACTGTGACCATGAAA+TGG 0.538015 7.1:+29912523 None:intergenic
GTTTGTGACTTCAAAGTCAA+AGG 0.540662 7.1:-29914514 MS.gene87765:CDS
GATAAGGAGCACAATATTGA+GGG 0.542125 7.1:+29916396 None:intergenic
GGATAAGGAGCACAATATTG+AGG 0.542921 7.1:+29916395 None:intergenic
TTGAAGGTACCTTGCGACGT+AGG 0.551744 7.1:+29916213 None:intergenic
GTGGTCGGAAGCACCGGCAT+CGG 0.553162 7.1:+29916428 None:intergenic
TGAAGGTACCTTGCGACGTA+GGG 0.554387 7.1:+29916214 None:intergenic
GTCGGAAGCACCGGCATCGG+CGG 0.554675 7.1:+29916431 None:intergenic
TTGACCACAGCCAAATCCAA+TGG 0.558143 7.1:+29916374 None:intergenic
AGTGACTATGCATGATCGGT+GGG 0.580863 7.1:-29914656 MS.gene87765:CDS
CAAGACACGTCGGTCACGGA+AGG 0.584927 7.1:+29916265 None:intergenic
GGTGTAGAGGCAGATGGTTG+TGG 0.592683 7.1:+29916452 None:intergenic
CAACCAAGACACGTCGGTCA+CGG 0.603138 7.1:+29916261 None:intergenic
TGCGACGTAGGGTGGTGATA+GGG 0.606682 7.1:+29916225 None:intergenic
TAGTGACTATGCATGATCGG+TGG 0.614019 7.1:-29914657 MS.gene87765:CDS
ACTATGCATGATCGGTGGGA+AGG 0.622514 7.1:-29914652 MS.gene87765:CDS
TGAGGGCCAAATATGGTGGT+CGG 0.625346 7.1:+29916413 None:intergenic
AGGTACCTTGCGACGTAGGG+TGG 0.633675 7.1:+29916217 None:intergenic
TATCACCACCCTACGTCGCA+AGG 0.636481 7.1:-29916222 MS.gene87765:intron
ATCGGCGGTGTAGAGGCAGA+TGG 0.638858 7.1:+29916446 None:intergenic
AGATAGTGACTATGCATGAT+CGG 0.644746 7.1:-29914660 MS.gene87765:CDS
AAGGTGATAGCAATATCAGA+CGG 0.662704 7.1:-29916350 MS.gene87765:CDS
ATATTGAGGGCCAAATATGG+TGG 0.664652 7.1:+29916409 None:intergenic
GATCGGTGGGAAGGTTACAT+GGG 0.664673 7.1:-29914643 MS.gene87765:CDS
TTCGTCGTCACTGATGTCAA+CGG 0.672271 7.1:-29916323 MS.gene87765:CDS
CAGCATCAACCAAGACACGT+CGG 0.749290 7.1:+29916255 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAATAATATGATAACA+TGG + chr7.1:29912894-29912913 None:intergenic 10.0%
!! ACTTATACTAATAATTATTA+GGG - chr7.1:29914721-29914740 MS.gene87765:intron 10.0%
!! ATTCTTATAATTTCAAAATA+GGG + chr7.1:29913651-29913670 None:intergenic 10.0%
!! TAAATAAAATAAATGTCATA+TGG + chr7.1:29914036-29914055 None:intergenic 10.0%
!!! AAAAAAAAAAATAGTTTGTT+TGG + chr7.1:29913811-29913830 None:intergenic 10.0%
!!! AAAAAAATCTATTTTTTTTC+CGG - chr7.1:29915739-29915758 MS.gene87765:intron 10.0%
!!! AAAAAATCTAATTTTTTTTC+CGG + chr7.1:29915161-29915180 None:intergenic 10.0%
!!! AAAAAGATTTTTAAAAATTC+TGG - chr7.1:29915269-29915288 MS.gene87765:intron 10.0%
!!! AAAAAGATTTTTAAAAATTC+TGG + chr7.1:29915288-29915269 None:intergenic 10.0%
!!! AATTCTTTTGTTTTTTTTTA+GGG + chr7.1:29913080-29913099 None:intergenic 10.0%
!!! CTGAATATTTTATTATTTTT+TGG - chr7.1:29915975-29915994 MS.gene87765:intron 10.0%
!!! CTGAATATTTTATTATTTTT+TGG + chr7.1:29915994-29915975 None:intergenic 10.0%
!!! GAAAAATTTTTTTTTTTACA+AGG - chr7.1:29916169-29916188 MS.gene87765:intron 10.0%
!!! TAATTCTTTTGTTTTTTTTT+AGG + chr7.1:29913081-29913100 None:intergenic 10.0%
!!! TGTAAAAAAAAAAATTTTTC+CGG + chr7.1:29916169-29916188 None:intergenic 10.0%
!!! TTTGGATTTTTTTATTTTTT+TGG + chr7.1:29914982-29915001 None:intergenic 10.0%
!! CATTCTTATAATTTCAAAAT+AGG + chr7.1:29913652-29913671 None:intergenic 15.0%
!! CCTTGTAAAAAAAAAAATTT+CGG - chr7.1:29914821-29914840 MS.gene87765:intron 15.0%
!! GACTTATACTAATAATTATT+AGG - chr7.1:29914720-29914739 MS.gene87765:intron 15.0%
!!! AAACCTAGATTATAAAATTT+TGG - chr7.1:29913617-29913636 MS.gene87765:intron 15.0%
!!! AGATTTTTTATAAAACATTC+TGG - chr7.1:29915346-29915365 MS.gene87765:intron 15.0%
!!! AGATTTTTTATAAAACATTC+TGG + chr7.1:29915365-29915346 None:intergenic 15.0%
!!! CATAAAAGTTGATTTAATTA+GGG + chr7.1:29916272-29916291 None:intergenic 15.0%
!!! CGAAATTTTTTTTTTTACAA+GGG + chr7.1:29914823-29914842 None:intergenic 15.0%
!!! GCAATATTTTATTAAAATTG+TGG - chr7.1:29915457-29915476 MS.gene87765:intron 15.0%
!!! TAGGCAAAAAAAATAATTTT+TGG - chr7.1:29915416-29915435 MS.gene87765:intron 15.0%
!!! TGAATGTTTTTATGATTTTT+TGG - chr7.1:29915841-29915860 MS.gene87765:intron 15.0%
!!! TTGAATGTTAGTATAAATTT+TGG - chr7.1:29913493-29913512 MS.gene87765:intron 15.0%
!!! TTTCCAAAATTTTATAATCT+AGG + chr7.1:29913623-29913642 None:intergenic 15.0%
!!! TTTTAAAAGAAATTCCAAAT+TGG - chr7.1:29913564-29913583 MS.gene87765:intron 15.0%
!!! TTTTTAAAAAAAATATGACC+TGG - chr7.1:29916034-29916053 MS.gene87765:intron 15.0%
!!! TTTTTTAAAAAAATATGACC+TGG + chr7.1:29914942-29914961 None:intergenic 15.0%
!! AAAAAATATAAGGACCAATT+TGG + chr7.1:29913581-29913600 None:intergenic 20.0%
!! AAACCTATTAAGATTGTATT+TGG - chr7.1:29915203-29915222 MS.gene87765:intron 20.0%
!! AATATTGTCTTCAAAGTTAA+AGG - chr7.1:29912578-29912597 MS.gene87765:intron 20.0%
!! ATGCATATCAATTAAAACTA+AGG + chr7.1:29913245-29913264 None:intergenic 20.0%
!! CCAAGTGATAATTAAATTAA+GGG + chr7.1:29914701-29914720 None:intergenic 20.0%
!! GAAAAAGATTTGAAAATGAA+AGG - chr7.1:29913727-29913746 MS.gene87765:intron 20.0%
!! TCCAAGTGATAATTAAATTA+AGG + chr7.1:29914702-29914721 None:intergenic 20.0%
!! TTTCCAAAAACAATCTTAAT+AGG - chr7.1:29915692-29915711 MS.gene87765:intron 20.0%
!! TTTCCAAATACAATCTTAAT+AGG + chr7.1:29915209-29915228 None:intergenic 20.0%
!!! AAAAAATAGTTTGTTTGGAT+AGG + chr7.1:29913806-29913825 None:intergenic 20.0%
!!! AAAAATAGTTTGTTTGGATA+GGG + chr7.1:29913805-29913824 None:intergenic 20.0%
!!! AAACCTATTAAGATTGTTTT+TGG + chr7.1:29915698-29915717 None:intergenic 20.0%
!!! ACTTGTTAAAGATTCAAAAA+AGG + chr7.1:29914653-29914672 None:intergenic 20.0%
!!! ATTCTAACAAAAATCCATTT+TGG + chr7.1:29915393-29915412 None:intergenic 20.0%
!!! CAAAGAAGAAATTTTATCTT+TGG - chr7.1:29914561-29914580 MS.gene87765:CDS 20.0%
!!! CCATAAAAGTTGATTTAATT+AGG + chr7.1:29916273-29916292 None:intergenic 20.0%
!!! CCGAAATTTTTTTTTTTACA+AGG + chr7.1:29914824-29914843 None:intergenic 20.0%
!!! CCTAATTAAATCAACTTTTA+TGG - chr7.1:29916270-29916289 MS.gene87765:CDS 20.0%
!!! TTAGTATAAATTTTGGAGAT+GGG - chr7.1:29913500-29913519 MS.gene87765:intron 20.0%
!!! TTCTAACAAAAATCCATTTT+GGG + chr7.1:29915392-29915411 None:intergenic 20.0%
!!! TTTCCAAAAGATTTTAAAAC+CGG + chr7.1:29915761-29915780 None:intergenic 20.0%
!!! TTTTTTTTTCTTTCTAATCG+TGG + chr7.1:29913441-29913460 None:intergenic 20.0%
! AAAACTAAATATTCGCTTGT+TGG + chr7.1:29914478-29914497 None:intergenic 25.0%
! AAGAATTCAAACTATGGAAA+AGG + chr7.1:29914128-29914147 None:intergenic 25.0%
! ACGTGTAAAAAAAAATTTCC+AGG + chr7.1:29916055-29916074 None:intergenic 25.0%
! ACTATTTGAATTCAATCAGT+TGG - chr7.1:29913975-29913994 MS.gene87765:intron 25.0%
! ACTTCTTAAAATGTGTCTTA+AGG + chr7.1:29914540-29914559 None:intergenic 25.0%
! ATCCAATAAAGTTGTACTAT+TGG - chr7.1:29914191-29914210 MS.gene87765:intron 25.0%
! CAAATACAGTTATAAAAGTG+AGG - chr7.1:29913312-29913331 MS.gene87765:intron 25.0%
! CCCTTAATTTAATTATCACT+TGG - chr7.1:29914698-29914717 MS.gene87765:intron 25.0%
! CTTCTTAAAATGTGTCTTAA+GGG + chr7.1:29914539-29914558 None:intergenic 25.0%
! TAAAAGAGTTAACGAGTTAA+AGG + chr7.1:29914152-29914171 None:intergenic 25.0%
! TCACCTAAGAATAAAACTAT+GGG - chr7.1:29913916-29913935 MS.gene87765:intron 25.0%
! TTCACCTAAGAATAAAACTA+TGG - chr7.1:29913915-29913934 MS.gene87765:intron 25.0%
!! ATGAAAGCATAATCAACATT+GGG + chr7.1:29916379-29916398 None:intergenic 25.0%
!! GGATTTTTGTTAGAATCATT+AGG - chr7.1:29915397-29915416 MS.gene87765:intron 25.0%
!! TATGAAAGCATAATCAACAT+TGG + chr7.1:29916380-29916399 None:intergenic 25.0%
!! TCTAACAAAAATCCATTTTG+GGG + chr7.1:29915391-29915410 None:intergenic 25.0%
!!! GTTAGTATAAATTTTGGAGA+TGG - chr7.1:29913499-29913518 MS.gene87765:intron 25.0%
!!! TGGAAATTTTTTTTTACACG+TGG - chr7.1:29916054-29916073 MS.gene87765:intron 25.0%
!!! TTACTTGATGAAGTTTTGTT+GGG - chr7.1:29916460-29916479 MS.gene87765:CDS 25.0%
!!! TTTCCGGTTTTAAAATCTTT+TGG - chr7.1:29915755-29915774 MS.gene87765:intron 25.0%
!!! TTTTTTTTATGTTAACCCTC+CGG - chr7.1:29913823-29913842 MS.gene87765:intron 25.0%
AAAGGCAAGAATTCAAACTA+TGG + chr7.1:29914134-29914153 None:intergenic 30.0%
AATTGGTAAAGACCATTTCA+TGG - chr7.1:29916342-29916361 MS.gene87765:CDS 30.0%
ACAGTTATAAAAGTGAGGTT+GGG - chr7.1:29913317-29913336 MS.gene87765:intron 30.0%
AGCTCCATTATCTTAAAAAC+CGG + chr7.1:29913845-29913864 None:intergenic 30.0%
ATAAGAGAGAATAACGTTGA+AGG + chr7.1:29912683-29912702 None:intergenic 30.0%
CACCAATAGTACAACTTTAT+TGG + chr7.1:29914196-29914215 None:intergenic 30.0%
CACGTGTAAAAAAAATTTCC+AGG - chr7.1:29914921-29914940 MS.gene87765:intron 30.0%
GAGATTAACAGTGAAGAAAA+GGG - chr7.1:29916424-29916443 MS.gene87765:CDS 30.0%
TACAGTTATAAAAGTGAGGT+TGG - chr7.1:29913316-29913335 MS.gene87765:intron 30.0%
TGAGATTAACAGTGAAGAAA+AGG - chr7.1:29916423-29916442 MS.gene87765:CDS 30.0%
! AACAATGTTGTTTGATTCAC+CGG + chr7.1:29914421-29914440 None:intergenic 30.0%
! AATCAAACCGGAATTTTTAC+AGG - chr7.1:29916197-29916216 MS.gene87765:intron 30.0%
! AATCAAACCGGAATTTTTAC+AGG + chr7.1:29916216-29916197 None:intergenic 30.0%
! ACTGTTCAGAGTCTTTTAAT+TGG - chr7.1:29916325-29916344 MS.gene87765:CDS 30.0%
! ATCAAACCGGAATTTTTACA+GGG - chr7.1:29916198-29916217 MS.gene87765:intron 30.0%
! ATCAAACCGGAATTTTTACA+GGG + chr7.1:29916217-29916198 None:intergenic 30.0%
! ATTTTTCACCCCTGTAATAT+AGG - chr7.1:29914752-29914771 MS.gene87765:intron 30.0%
! TATTCGCTTGTTGGTTATAT+AGG + chr7.1:29914469-29914488 None:intergenic 30.0%
! TGTTGATTATGCTTTCATAG+TGG - chr7.1:29916381-29916400 MS.gene87765:CDS 30.0%
! TTTGGTCTTCAATTGCATTA+TGG + chr7.1:29914307-29914326 None:intergenic 30.0%
!! CTTACTTGATGAAGTTTTGT+TGG - chr7.1:29916459-29916478 MS.gene87765:CDS 30.0%
!!! AGACCCATAGTTTTATTCTT+AGG + chr7.1:29913922-29913941 None:intergenic 30.0%
!!! CTGGAAATTTTTTTTACACG+TGG + chr7.1:29914923-29914942 None:intergenic 30.0%
!!! TACTTGATGAAGTTTTGTTG+GGG - chr7.1:29916461-29916480 MS.gene87765:CDS 30.0%
AAATATTACCCCCTCTTAGT+CGG + chr7.1:29913404-29913423 None:intergenic 35.0%
AAGGTGATAGCAATATCAGA+CGG - chr7.1:29912527-29912546 MS.gene87765:CDS 35.0%
ACAATATTGAGGGCCAAATA+TGG + chr7.1:29912474-29912493 None:intergenic 35.0%
ACCTTGATATGTCATACTGT+CGG + chr7.1:29913374-29913393 None:intergenic 35.0%
ACTTCAAAGTCAAAGGTAGT+TGG - chr7.1:29914370-29914389 MS.gene87765:intron 35.0%
AGATAGTGACTATGCATGAT+CGG - chr7.1:29914217-29914236 MS.gene87765:intron 35.0%
AGCAAGAAACACGTCTAATT+TGG + chr7.1:29914325-29914344 None:intergenic 35.0%
ATATTGTGCTCCTTATCCAT+TGG - chr7.1:29912487-29912506 MS.gene87765:CDS 35.0%
ATCAAACAACATTGTTGCAC+AGG - chr7.1:29914425-29914444 MS.gene87765:intron 35.0%
CCATTATCTTAAAAACCGGA+GGG + chr7.1:29913841-29913860 None:intergenic 35.0%
GATAAACTGTGACCATGAAA+TGG + chr7.1:29916357-29916376 None:intergenic 35.0%
GTTTGTGACTTCAAAGTCAA+AGG - chr7.1:29914363-29914382 MS.gene87765:intron 35.0%
GTTTGTTTGGATAGGGTAAT+GGG + chr7.1:29913798-29913817 None:intergenic 35.0%
TCCATTATCTTAAAAACCGG+AGG + chr7.1:29913842-29913861 None:intergenic 35.0%
! AGTTTGTTTGGATAGGGTAA+TGG + chr7.1:29913799-29913818 None:intergenic 35.0%
! ATAATGGAGCTCTCATAGTT+TGG - chr7.1:29913854-29913873 MS.gene87765:intron 35.0%
! CTTTCTAATCGTGGCATTTT+CGG + chr7.1:29913432-29913451 None:intergenic 35.0%
! GATAAGGAGCACAATATTGA+GGG + chr7.1:29912484-29912503 None:intergenic 35.0%
! GTTTTTCACCCCTGTAATAT+AGG + chr7.1:29916241-29916260 None:intergenic 35.0%
! TACAAGGGCATAAATCAAAC+CGG + chr7.1:29914808-29914827 None:intergenic 35.0%
! TCAAACCGGAATTTTTACAG+GGG - chr7.1:29916199-29916218 MS.gene87765:intron 35.0%
! TCAAACCGGAATTTTTACAG+GGG + chr7.1:29916218-29916199 None:intergenic 35.0%
!! TACAAGGGCATTAATCAAAC+CGG - chr7.1:29916185-29916204 MS.gene87765:intron 35.0%
!!! ACTTGATGAAGTTTTGTTGG+GGG - chr7.1:29916462-29916481 MS.gene87765:CDS 35.0%
ACAGCCAAATCCAATGGATA+AGG + chr7.1:29912500-29912519 None:intergenic 40.0%
AGGTTCAAATTCCGACTAAG+AGG - chr7.1:29913390-29913409 MS.gene87765:intron 40.0%
ATATTGAGGGCCAAATATGG+TGG + chr7.1:29912471-29912490 None:intergenic 40.0%
CCTGTAATATAGGCCATTTC+CGG - chr7.1:29914762-29914781 MS.gene87765:intron 40.0%
CCTGTAATATAGGCCATTTC+CGG + chr7.1:29914781-29914762 None:intergenic 40.0%
CCTTGATATGTCATACTGTC+GGG + chr7.1:29913373-29913392 None:intergenic 40.0%
CGGAAATGGCCTATATTACA+GGG - chr7.1:29916229-29916248 MS.gene87765:CDS 40.0%
CGGAAATGGCCTATATTACA+GGG + chr7.1:29916248-29916229 None:intergenic 40.0%
GAAGAAAAGGGAAGTGAATC+AGG - chr7.1:29916436-29916455 MS.gene87765:CDS 40.0%
GGAAATGGCCTATATTACAG+GGG - chr7.1:29916230-29916249 MS.gene87765:CDS 40.0%
GGAAATGGCCTATATTACAG+GGG + chr7.1:29916249-29916230 None:intergenic 40.0%
GGTTCAAATTCCGACTAAGA+GGG - chr7.1:29913391-29913410 MS.gene87765:intron 40.0%
GTCTTACTATAGCCCCAAAA+TGG - chr7.1:29915376-29915395 MS.gene87765:intron 40.0%
GTTCAAATTCCGACTAAGAG+GGG - chr7.1:29913392-29913411 MS.gene87765:intron 40.0%
GTTTGATTCACCGGCATAAA+CGG + chr7.1:29914412-29914431 None:intergenic 40.0%
TACCTAATGACGAATCGTTC+AGG + chr7.1:29913945-29913964 None:intergenic 40.0%
TATAAAAGTGAGGTTGGGTG+AGG - chr7.1:29913322-29913341 MS.gene87765:intron 40.0%
TCATGCTAACAAGTGCTCTT+AGG + chr7.1:29914678-29914697 None:intergenic 40.0%
TGCTCCTTATCCATTGGATT+TGG - chr7.1:29912493-29912512 MS.gene87765:CDS 40.0%
TTATCCATTGGATTTGGCTG+TGG - chr7.1:29912499-29912518 MS.gene87765:CDS 40.0%
TTCAAATTCCGACTAAGAGG+GGG - chr7.1:29913393-29913412 MS.gene87765:intron 40.0%
TTTCGCCCCTGTAAAAATTC+CGG - chr7.1:29914786-29914805 MS.gene87765:intron 40.0%
TTTCGCCCCTGTAAAAATTC+CGG + chr7.1:29914805-29914786 None:intergenic 40.0%
! ATTTTTACAGGGGCGAAAAC+CGG - chr7.1:29916209-29916228 MS.gene87765:intron 40.0%
! ATTTTTACAGGGGCGAAAAC+CGG + chr7.1:29916228-29916209 None:intergenic 40.0%
! GGATAAGGAGCACAATATTG+AGG + chr7.1:29912485-29912504 None:intergenic 40.0%
!!! CCCTCCGGTTTTTAAGATAA+TGG - chr7.1:29913838-29913857 MS.gene87765:intron 40.0%
!!! CTTGATGAAGTTTTGTTGGG+GGG - chr7.1:29916463-29916482 MS.gene87765:CDS 40.0%
AGTGACTATGCATGATCGGT+GGG - chr7.1:29914221-29914240 MS.gene87765:intron 45.0%
CCCGACAGTATGACATATCA+AGG - chr7.1:29913370-29913389 MS.gene87765:intron 45.0%
CCGGAAATGGCCTATATTAC+AGG - chr7.1:29916228-29916247 MS.gene87765:CDS 45.0%
CCGGAAATGGCCTATATTAC+AGG + chr7.1:29916247-29916228 None:intergenic 45.0%
CTCCTGAACGATTCGTCATT+AGG - chr7.1:29913940-29913959 MS.gene87765:intron 45.0%
GGATTTGGCTGTGGTCAAAA+AGG - chr7.1:29912508-29912527 MS.gene87765:CDS 45.0%
TAGTGACTATGCATGATCGG+TGG - chr7.1:29914220-29914239 MS.gene87765:intron 45.0%
TTCGTCGTCACTGATGTCAA+CGG - chr7.1:29912554-29912573 MS.gene87765:CDS 45.0%
TTGACCACAGCCAAATCCAA+TGG + chr7.1:29912506-29912525 None:intergenic 45.0%
! GCAGATGGTTGTGGTTGATA+AGG + chr7.1:29912419-29912438 None:intergenic 45.0%
!! TTTGAAAAAAAAAAAATATA+AGG + chr7.1:29913591-29913610 None:intergenic 5.0%
!!! AAAAATTTTTTTTTTTACAA+GGG - chr7.1:29916170-29916189 MS.gene87765:intron 5.0%
!!! AATTTCTTTTAAAAATTTAT+AGG + chr7.1:29913558-29913577 None:intergenic 5.0%
!!! AATTTTCAAAATTAAAAAAA+AGG + chr7.1:29915580-29915599 None:intergenic 5.0%
!!! AATTTTCAAATTTAAAAAAA+AGG - chr7.1:29915321-29915340 MS.gene87765:intron 5.0%
!!! TGTATTTTTAAAATTTAAAA+AGG - chr7.1:29913527-29913546 MS.gene87765:intron 5.0%
!!! TTTTAAATTTTAAAAATACA+GGG + chr7.1:29913527-29913546 None:intergenic 5.0%
!!! TTTTTAAATTTTAAAAATAC+AGG + chr7.1:29913528-29913547 None:intergenic 5.0%
!!! TTTTTATTTTTATGATTTTT+TGG - chr7.1:29915917-29915936 MS.gene87765:intron 5.0%
!!! TTTTTATTTTTATGATTTTT+TGG + chr7.1:29915936-29915917 None:intergenic 5.0%
!!! TTTTTATTTTTTTTATTTTC+TGG - chr7.1:29915944-29915963 MS.gene87765:intron 5.0%
!!! TTTTTTAAAAAATTTAAAAC+CGG - chr7.1:29915139-29915158 MS.gene87765:intron 5.0%
ACTATGCATGATCGGTGGGA+AGG - chr7.1:29914225-29914244 MS.gene87765:intron 50.0%
AGTCAGCGAATCTGCTGAGT+TGG + chr7.1:29914864-29914883 None:intergenic 50.0%
CAGCATCAACCAAGACACGT+CGG + chr7.1:29912625-29912644 None:intergenic 50.0%
CGATCTTGCACCGTTTATGC+CGG - chr7.1:29914399-29914418 MS.gene87765:intron 50.0%
GATCGGTGGGAAGGTTACAT+GGG - chr7.1:29914234-29914253 MS.gene87765:intron 50.0%
GTGCTTCCGACCACCATATT+TGG - chr7.1:29912458-29912477 MS.gene87765:CDS 50.0%
TGAGGATTGAGTGTAGCGCA+AGG - chr7.1:29913340-29913359 MS.gene87765:intron 50.0%
TGAGGGCCAAATATGGTGGT+CGG + chr7.1:29912467-29912486 None:intergenic 50.0%
TGATCGGTGGGAAGGTTACA+TGG - chr7.1:29914233-29914252 MS.gene87765:intron 50.0%
! AATATGGTGGTCGGAAGCAC+CGG + chr7.1:29912458-29912477 None:intergenic 50.0%
! ACTCAGCAGATTCGCTGACT+TGG - chr7.1:29914864-29914883 MS.gene87765:intron 50.0%
! AGCGAATCTGCTGAGTTGGA+GGG - chr7.1:29916129-29916148 MS.gene87765:intron 50.0%
! AGCGAATCTGCTGAGTTGGA+GGG + chr7.1:29916148-29916129 None:intergenic 50.0%
!! TGAAGGTACCTTGCGACGTA+GGG + chr7.1:29912666-29912685 None:intergenic 50.0%
!! TTGAAGGTACCTTGCGACGT+AGG + chr7.1:29912667-29912686 None:intergenic 50.0%
ACAGGGGCGAAAACCGGAAA+TGG - chr7.1:29916215-29916234 MS.gene87765:intron 55.0%
ACAGGGGCGAAAACCGGAAA+TGG + chr7.1:29916234-29916215 None:intergenic 55.0%
ACTCAGCAGATTCGCTGACG+TGG + chr7.1:29916125-29916144 None:intergenic 55.0%
CAACCAAGACACGTCGGTCA+CGG + chr7.1:29912619-29912638 None:intergenic 55.0%
CGTCAGCGAATCTGCTGAGT+TGG - chr7.1:29916125-29916144 MS.gene87765:intron 55.0%
GGTGTAGAGGCAGATGGTTG+TGG + chr7.1:29912428-29912447 None:intergenic 55.0%
TATCACCACCCTACGTCGCA+AGG - chr7.1:29912655-29912674 MS.gene87765:intron 55.0%
TGCGACGTAGGGTGGTGATA+GGG + chr7.1:29912655-29912674 None:intergenic 55.0%
TTGCGACGTAGGGTGGTGAT+AGG + chr7.1:29912656-29912675 None:intergenic 55.0%
! CAGCGAATCTGCTGAGTTGG+AGG - chr7.1:29916128-29916147 MS.gene87765:intron 55.0%
! CAGCGAATCTGCTGAGTTGG+AGG + chr7.1:29916147-29916128 None:intergenic 55.0%
! CGAATCTGCTGAGTTGGAGG+GGG - chr7.1:29916131-29916150 MS.gene87765:intron 55.0%
! CGAATCTGCTGAGTTGGAGG+GGG + chr7.1:29916150-29916131 None:intergenic 55.0%
! GAATCTGCTGAGTTGGAGGG+GGG - chr7.1:29916132-29916151 MS.gene87765:intron 55.0%
! GCGAATCTGCTGAGTTGGAG+GGG - chr7.1:29916130-29916149 MS.gene87765:intron 55.0%
! GCGAATCTGCTGAGTTGGAG+GGG + chr7.1:29916149-29916130 None:intergenic 55.0%
AGGTACCTTGCGACGTAGGG+TGG + chr7.1:29912663-29912682 None:intergenic 60.0%
ATCGGCGGTGTAGAGGCAGA+TGG + chr7.1:29912434-29912453 None:intergenic 60.0%
CAAGACACGTCGGTCACGGA+AGG + chr7.1:29912615-29912634 None:intergenic 60.0%
CTTCCGTGACCGACGTGTCT+TGG - chr7.1:29912613-29912632 MS.gene87765:intron 60.0%
! ATCTGCTGAGTTGGAGGGGG+AGG + chr7.1:29916153-29916134 None:intergenic 60.0%
! TCTGCTGAGTTGGAGGGGGA+GGG + chr7.1:29914854-29914873 None:intergenic 60.0%
TGCCTCTACACCGCCGATGC+CGG - chr7.1:29912436-29912455 MS.gene87765:CDS 65.0%
! CTGCTGAGTTGGAGGGGGAG+GGG + chr7.1:29914853-29914872 None:intergenic 65.0%
! CTGCTGAGTTGGAGGGGGGA+GGG - chr7.1:29916136-29916155 MS.gene87765:intron 65.0%
! TCTGCTGAGTTGGAGGGGGG+AGG - chr7.1:29916135-29916154 MS.gene87765:intron 65.0%
! TGCTGAGTTGGAGGGGGGAG+GGG - chr7.1:29916137-29916156 MS.gene87765:intron 65.0%
!! GTGGTCGGAAGCACCGGCAT+CGG + chr7.1:29912452-29912471 None:intergenic 65.0%
!! TCGCTGACGTGGCGCTGACT+TGG + chr7.1:29916114-29916133 None:intergenic 65.0%
!!! GAGGGGGGAGGGGTGTTTTC+CGG - chr7.1:29916147-29916166 MS.gene87765:intron 65.0%
!! CACCGGCATCGGCGGTGTAG+AGG + chr7.1:29912441-29912460 None:intergenic 70.0%
!! GTCGGAAGCACCGGCATCGG+CGG + chr7.1:29912449-29912468 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 29912407 29916492 29912407 ID=MS.gene87765
chr7.1 mRNA 29912407 29916492 29912407 ID=MS.gene87765.t1;Parent=MS.gene87765
chr7.1 exon 29916223 29916492 29916223 ID=MS.gene87765.t1.exon1;Parent=MS.gene87765.t1
chr7.1 CDS 29916223 29916492 29916223 ID=cds.MS.gene87765.t1;Parent=MS.gene87765.t1
chr7.1 exon 29914453 29914680 29914453 ID=MS.gene87765.t1.exon2;Parent=MS.gene87765.t1
chr7.1 CDS 29914453 29914680 29914453 ID=cds.MS.gene87765.t1;Parent=MS.gene87765.t1
chr7.1 exon 29912407 29912589 29912407 ID=MS.gene87765.t1.exon3;Parent=MS.gene87765.t1
chr7.1 CDS 29912407 29912589 29912407 ID=cds.MS.gene87765.t1;Parent=MS.gene87765.t1
Gene Sequence

>MS.gene87765

ATGGCTTATCCTTATCAACCACAACCATCTGCCTCTACACCGCCGATGCCGGTGCTTCCGACCACCATATTTGGCCCTCAATATTGTGCTCCTTATCCATTGGATTTGGCTGTGGTCAAAAAGGTGATAGCAATATCAGACGGAAACTTCGTCGTCACTGATGTCAACGGCAATATTGTCTTCAAAGTTAAAGGTTCTCTTTTAACCTTCCGTGACCGACGTGTCTTGGTTGATGCTGCAGATAACCCTATCACCACCCTACGTCGCAAGGTACCTTCAACGTTATTCTCTCTTATTTCTTATTTTCTTTCATTTATGTACAAATAGTAAATCGTGCATTTTTTGTGTTAAAGTTTACAACTTCAAAAGTAATAGCAATGCTCAATTTACTTACTCAAAAAAAAAAAAAAAAGTAATAGTCAACTTGTTCATTTCGTGATGATTTTTTTTTTAAAATTGATGTAAAGATAAAAATGATACAAATCCATGTTATCATATTATTATTTTTTTGAAATATTAATGTTTTAATGATGAGTTAGAGAGACATATCAATGTAATTTATGCTTTGTTTAAAAATAAAGATAATTTTTTAAAATTATTGATTATTCTGATAGAAAAGAAAAAAATTGCATTTTTTAAAATAATTAGAACAACAAAATAATTATTTTTTCCCTAAAAAAAAACAAAAGAATTATTTTTATTAATTTATAAACGCGTCATTTGTAGCAAGTTTCTCATGTTCACAATATTTCACTTAAAGAGTCTTTCATTTTTTTTAATAGCAAAACATCTATAGAAAATAAAAATTGAAAATATTTTCATAAAGTAAACATGACCTTAGTTTTAATTGATATGCATTAAGAAATTAGTATTTACTATTTTGACACTTCATATCATAAATATTTCAAATACAGTTATAAAAGTGAGGTTGGGTGAGGATTGAGTGTAGCGCAAGGAGTAGATCCCGACAGTATGACATATCAAGGTTCAAATTCCGACTAAGAGGGGGTAATATTTAATGTCCGAAAATGCCACGATTAGAAAGAAAAAAAAATTGACGAAAAAAATAATAAGATCTTATATAATTTGAATGTTAGTATAAATTTTGGAGATGGGTCCCTGTATTTTTAAAATTTAAAAAGGTTTTTCCTATAAATTTTTAAAAGAAATTCCAAATTGGTCCTTATATTTTTTTTTTTTCAAAATTAACAAACCTAGATTATAAAATTTTGGAAATTAGTCCCTATTTTGAAATTATAAGAATGAAGAATTTTATTTAAAAAAATAAAAGAATGAAGAATTTTATTACACTATTCAAATGAAAAAGATTTGAAAATGAAAGGAATTGAAGCTTTTGAATTGCTTAAAATTCTAATTTCTCTTAATTTCCCATTACCCTATCCAAACAAACTATTTTTTTTTTTATGTTAACCCTCCGGTTTTTAAGATAATGGAGCTCTCATAGTTTGGAGTTCGATGAAAAGTAAGTCATGTTCAAAAATAAATGTTTCACCTAAGAATAAAACTATGGGTCTCCTGAACGATTCGTCATTAGGTAGAACTCGTTAACTATTTGAATTCAATCAGTTGGTTTTGACATTATTACTTTACAAAACAATCTTCTCACCATATGACATTTATTTTATTTATTTGACAAAATTCATTTTTTTTATAGACAAATTATTATCTTAGTTGTTTTGTTAATGTTTTTTTTTTCTCCTTTTCCATAGTTTGAATTCTTGCCTTTAACTCGTTAACTCTTTTAATCGTTTATCAATCGAGCTATCCAATAAAGTTGTACTATTGGTGCAGATAGTGACTATGCATGATCGGTGGGAAGGTTACATGGGTGAAAGCACAAATGCTAAAGATCTAGTATTTACATTGAAACGATCGTCCATAATGCAATTGAAGACCAAATTAGACGTGTTTCTTGCTAATAACACAAAAGAAGATGTTTGTGACTTCAAAGTCAAAGGTAGTTGGTTCGAACGATCTTGCACCGTTTATGCCGGTGAATCAAACAACATTGTTGCACAGGTATATATAACTTCTCTAGCCTATATAACCAACAAGCGAATATTTAGTTTTTATTAATTACATTAATTTAAGAGAAATGTTGACAAGTGCCCTTAAGACACATTTTAAGAAGTACAAAGAAGAAATTTTATCTTTGGATTTGTATATTCAACACATTGAAACTTTAAAAGCAACTTTTCATATATTAAATTTGCAAATTATTTCCTTTTTTGAATCTTTAACAAGTGTCCTAAGAGCACTTGTTAGCATGACCCTTAATTTAATTATCACTTGGACTTATACTAATAATTATTAGGGTTAATAGTATTTTTCACCCCTGTAATATAGGCCATTTCCGGTTTTCGCCCCTGTAAAAATTCCGGTTTGATTTATGCCCTTGTAAAAAAAAAAATTTCGGAAAACACCCCTCCCCCTCCAACTCAGCAGATTCGCTGACTTGGCTTTTTTTTTTCATTTTTTATTTTTTTTTAATGCCACGTGTAAAAAAAATTTCCAGGTCATATTTTTTTAAAAAATATATTTTAATATAAATTTTAAAAAATAAAAAAATCCAAAAAATAATAAAATATTCAGTTTTTTTTCCAAAAAAATAAAAAAATCCAAAAAATCATAAAAATAAAAAAGTTTTTTAAAAAAAATTTAAAAAATCGAAAATAATTTTTAAAAAATAAAAAATCATAAAAACATTCAGTTTTTTTAAAAAATTTAAAACCGGAAAAAAAATTAGATTTTTTTGAAAAATTTAAAAATTAGAAAAAACCTATTAAGATTGTATTTGGAAATTTAAAAAATCAGAAAATATAATCAGATTTTTTTAAAATTAAAAAGATTTTTAAAAATTCTGGAATTTAATTTTCAAAATACAAAAAAAGTAAATTTTCAAATTTAAAAAAAAGGTCAGATTTTTTATAAAACATTCTGGAAAAAAAGTCTTACTATAGCCCCAAAATGGATTTTTGTTAGAATCATTAGGCAAAAAAAATAATTTTTGGAATGATATGATTTTTTTCGCAATATTTTATTAAAATTGTGGTATAAGATTTTCGAATAAAAAATCTGAATTTTTCTATATTTGTATTCAGATTTTTAAAAATTATTTTTTTTTCCAGAATGTTTTATAAAAAATCTGACCTTTTTTTTAATTTTGAAAATTTACTTTTTTTGTATTTTGAAAATTAAATTCCAGAATTTTTAAAAATCTTTTTAATTTTAAAAAAATCTGATAATATTTTCTGATTTTTTAAATTTCCAAAAACAATCTTAATAGGTTTTTTCTAATTTTTAAATTTTTCAAAAAAATCTATTTTTTTTCCGGTTTTAAAATCTTTTGGAAAAAAAATATGACTATTTTTCTGTTTTTTTATATTTCGATTTTTTAAATTTTTTAAAAAAACTGAATGTTTTTATGATTTTTTGGATTTTTTATTTTTTAAAAATTATTTTCGATTTTTTAAATTTTTTTTAAAAACTTTTTTATTTTTATGATTTTTTGGATTTTTTTTATTTTTTTTATTTTCTGGAAAAAAAACTGAATATTTTATTATTTTTTGGATTTTTTTTATTTTTTAAAATTTATTTTTAAATATTTTTTTAAAAAAAATATGACCTGGAAATTTTTTTTTACACGTGGCATTAAAAAAAAATAAAAAATGAAAAAAAAAAAGCCAAGTCAGCGCCACGTCAGCGAATCTGCTGAGTTGGAGGGGGGAGGGGTGTTTTCCGGAAAAATTTTTTTTTTTACAAGGGCATTAATCAAACCGGAATTTTTACAGGGGCGAAAACCGGAAATGGCCTATATTACAGGGGTGAAAAACACTATTAACCCTAATTAAATCAACTTTTATGGCATTGTTGTTATTGCAGATGCACAAAAAGCACACTGTTCAGAGTCTTTTAATTGGTAAAGACCATTTCATGGTCACAGTTTATCCCAATGTTGATTATGCTTTCATAGTGGCATTAATCGTGATTCTTAATGAGATTAACAGTGAAGAAAAGGGAAGTGAATCAGGCTTACTTGATGAAGTTTTGTTGGGGGGTGTTTAA

Protein sequence

>MS.gene87765.t1

MAYPYQPQPSASTPPMPVLPTTIFGPQYCAPYPLDLAVVKKVIAISDGNFVVTDVNGNIVFKVKGSLLTFRDRRVLVDAADNPITTLRRKIVTMHDRWEGYMGESTNAKDLVFTLKRSSIMQLKTKLDVFLANNTKEDVCDFKVKGSWFERSCTVYAGESNNIVAQMHKKHTVQSLLIGKDHFMVTVYPNVDYAFIVALIVILNEINSEEKGSESGLLDEVLLGGV