Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87043.t1 | XP_003623539.1 | 92.5 | 226 | 17 | 0 | 1 | 226 | 1 | 226 | 1.60E-114 | 422.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87043.t1 | Q9LZX1 | 56.1 | 212 | 91 | 1 | 2 | 213 | 8 | 217 | 1.1e-68 | 261.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87043.t1 | G7KW21 | 92.5 | 226 | 17 | 0 | 1 | 226 | 1 | 226 | 1.1e-114 | 422.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04932 | MS.gene87043 | 0.803932 | 2.75E-49 | -1.69E-46 |
| MS.gene049488 | MS.gene87043 | -0.803532 | 3.33E-49 | -1.69E-46 |
| MS.gene049549 | MS.gene87043 | 0.816367 | 5.74E-52 | -1.69E-46 |
| MS.gene050133 | MS.gene87043 | 0.801672 | 8.06E-49 | -1.69E-46 |
| MS.gene050426 | MS.gene87043 | 0.815091 | 1.10E-51 | -1.69E-46 |
| MS.gene050464 | MS.gene87043 | -0.80277 | 4.79E-49 | -1.69E-46 |
| MS.gene050670 | MS.gene87043 | -0.812264 | 4.63E-51 | -1.69E-46 |
| MS.gene051158 | MS.gene87043 | 0.837119 | 6.27E-57 | -1.69E-46 |
| MS.gene051525 | MS.gene87043 | -0.803097 | 4.10E-49 | -1.69E-46 |
| MS.gene051996 | MS.gene87043 | 0.842917 | 1.93E-58 | -1.69E-46 |
| MS.gene052011 | MS.gene87043 | 0.817168 | 3.79E-52 | -1.69E-46 |
| MS.gene052128 | MS.gene87043 | 0.802731 | 4.88E-49 | -1.69E-46 |
| MS.gene052211 | MS.gene87043 | 0.809624 | 1.73E-50 | -1.69E-46 |
| MS.gene052223 | MS.gene87043 | 0.864608 | 1.08E-64 | -1.69E-46 |
| MS.gene052253 | MS.gene87043 | -0.810414 | 1.17E-50 | -1.69E-46 |
| MS.gene05233 | MS.gene87043 | 0.824832 | 6.52E-54 | -1.69E-46 |
| MS.gene05240 | MS.gene87043 | 0.848953 | 4.41E-60 | -1.69E-46 |
| MS.gene052414 | MS.gene87043 | -0.802412 | 5.68E-49 | -1.69E-46 |
| MS.gene052706 | MS.gene87043 | 0.801102 | 1.05E-48 | -1.69E-46 |
| MS.gene053406 | MS.gene87043 | 0.841643 | 4.19E-58 | -1.69E-46 |
| MS.gene054138 | MS.gene87043 | 0.813126 | 3.00E-51 | -1.69E-46 |
| MS.gene054146 | MS.gene87043 | 0.820293 | 7.41E-53 | -1.69E-46 |
| MS.gene054147 | MS.gene87043 | 0.826515 | 2.60E-54 | -1.69E-46 |
| MS.gene054183 | MS.gene87043 | -0.811091 | 8.33E-51 | -1.69E-46 |
| MS.gene054277 | MS.gene87043 | 0.827455 | 1.55E-54 | -1.69E-46 |
| MS.gene054290 | MS.gene87043 | 0.805863 | 1.09E-49 | -1.69E-46 |
| MS.gene054421 | MS.gene87043 | 0.807957 | 3.92E-50 | -1.69E-46 |
| MS.gene054742 | MS.gene87043 | 0.889765 | 1.81E-73 | -1.69E-46 |
| MS.gene055595 | MS.gene87043 | 0.800337 | 1.51E-48 | -1.69E-46 |
| MS.gene055597 | MS.gene87043 | 0.80515 | 1.53E-49 | -1.69E-46 |
| MS.gene055601 | MS.gene87043 | 0.826952 | 2.05E-54 | -1.69E-46 |
| MS.gene056076 | MS.gene87043 | 0.80706 | 6.08E-50 | -1.69E-46 |
| MS.gene056330 | MS.gene87043 | 0.893837 | 4.33E-75 | -1.69E-46 |
| MS.gene056680 | MS.gene87043 | 0.830244 | 3.28E-55 | -1.69E-46 |
| MS.gene056690 | MS.gene87043 | 0.836079 | 1.15E-56 | -1.69E-46 |
| MS.gene056691 | MS.gene87043 | 0.815306 | 9.89E-52 | -1.69E-46 |
| MS.gene056899 | MS.gene87043 | 0.829862 | 4.06E-55 | -1.69E-46 |
| MS.gene056920 | MS.gene87043 | 0.880444 | 5.46E-70 | -1.69E-46 |
| MS.gene056922 | MS.gene87043 | 0.81351 | 2.47E-51 | -1.69E-46 |
| MS.gene056923 | MS.gene87043 | 0.842979 | 1.86E-58 | -1.69E-46 |
| MS.gene056924 | MS.gene87043 | 0.841548 | 4.44E-58 | -1.69E-46 |
| MS.gene057310 | MS.gene87043 | -0.806352 | 8.58E-50 | -1.69E-46 |
| MS.gene057544 | MS.gene87043 | 0.820192 | 7.81E-53 | -1.69E-46 |
| MS.gene057749 | MS.gene87043 | -0.816215 | 6.20E-52 | -1.69E-46 |
| MS.gene057823 | MS.gene87043 | -0.815331 | 9.77E-52 | -1.69E-46 |
| MS.gene057825 | MS.gene87043 | -0.817454 | 3.27E-52 | -1.69E-46 |
| MS.gene058218 | MS.gene87043 | 0.834088 | 3.67E-56 | -1.69E-46 |
| MS.gene058928 | MS.gene87043 | -0.801044 | 1.08E-48 | -1.69E-46 |
| MS.gene059043 | MS.gene87043 | 0.811061 | 8.45E-51 | -1.69E-46 |
| MS.gene059328 | MS.gene87043 | 0.816038 | 6.80E-52 | -1.69E-46 |
| MS.gene059402 | MS.gene87043 | 0.806946 | 6.42E-50 | -1.69E-46 |
| MS.gene059420 | MS.gene87043 | -0.815 | 1.16E-51 | -1.69E-46 |
| MS.gene059891 | MS.gene87043 | 0.802865 | 4.58E-49 | -1.69E-46 |
| MS.gene059955 | MS.gene87043 | 0.801916 | 7.18E-49 | -1.69E-46 |
| MS.gene060087 | MS.gene87043 | 0.851489 | 8.59E-61 | -1.69E-46 |
| MS.gene060578 | MS.gene87043 | 0.806922 | 6.50E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene87043 | MS.gene87765 | PPI |
| MS.gene87043 | MS.gene42096 | PPI |
| MS.gene87043 | MS.gene42098 | PPI |
| MS.gene87043 | MS.gene26305 | PPI |
| MS.gene87043 | MS.gene87041 | PPI |
| MS.gene87043 | MS.gene42848 | PPI |
| MS.gene91237 | MS.gene87043 | PPI |
| MS.gene87043 | MS.gene87039 | PPI |
| MS.gene87043 | MS.gene42099 | PPI |
| MS.gene87043 | MS.gene91238 | PPI |
| MS.gene87043 | MS.gene87040 | PPI |
| MS.gene87043 | MS.gene25045 | PPI |
| MS.gene87043 | MS.gene87046 | PPI |
| MS.gene87043 | MS.gene87768 | PPI |
| MS.gene87043 | MS.gene81036 | PPI |
| MS.gene87043 | MS.gene051028 | PPI |
| MS.gene87043 | MS.gene87767 | PPI |
| MS.gene87043 | MS.gene87769 | PPI |
| MS.gene87043 | MS.gene009718 | PPI |
| MS.gene87043 | MS.gene009719 | PPI |
| MS.gene87043 | MS.gene99705 | PPI |
| MS.gene009719 | MS.gene87043 | PPI |
| MS.gene87043 | MS.gene42100 | PPI |
| MS.gene42098 | MS.gene87043 | PPI |
| MS.gene87043 | MS.gene42097 | PPI |
| MS.gene87043 | MS.gene87762 | PPI |
| MS.gene87043 | MS.gene42091 | PPI |
| MS.gene87043 | MS.gene87038 | PPI |
| MS.gene87767 | MS.gene87043 | PPI |
| MS.gene87043 | MS.gene91237 | PPI |
| MS.gene87043 | MS.gene99704 | PPI |
| MS.gene87043 | MS.gene42103 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87043.t1 | MTR_7g072170 | 92.478 | 226 | 17 | 0 | 1 | 226 | 1 | 226 | 7.17e-160 | 441 |
| MS.gene87043.t1 | MTR_7g072140 | 82.464 | 211 | 37 | 0 | 1 | 211 | 1 | 211 | 8.13e-132 | 370 |
| MS.gene87043.t1 | MTR_7g072270 | 82.160 | 213 | 36 | 2 | 1 | 213 | 1 | 211 | 5.38e-130 | 365 |
| MS.gene87043.t1 | MTR_7g072120 | 83.019 | 212 | 34 | 2 | 1 | 211 | 1 | 211 | 1.54e-129 | 364 |
| MS.gene87043.t1 | MTR_7g072250 | 71.300 | 223 | 49 | 3 | 1 | 213 | 25 | 242 | 3.53e-110 | 316 |
| MS.gene87043.t1 | MTR_7g072270 | 81.437 | 167 | 29 | 2 | 1 | 167 | 1 | 165 | 4.37e-99 | 285 |
| MS.gene87043.t1 | MTR_4g029430 | 58.201 | 189 | 73 | 3 | 23 | 210 | 15 | 198 | 1.64e-75 | 227 |
| MS.gene87043.t1 | MTR_7g071710 | 82.051 | 117 | 21 | 0 | 94 | 210 | 1 | 117 | 5.21e-72 | 215 |
| MS.gene87043.t1 | MTR_1g014180 | 52.880 | 191 | 79 | 6 | 19 | 204 | 1 | 185 | 6.28e-59 | 184 |
| MS.gene87043.t1 | MTR_1g014150 | 46.237 | 186 | 91 | 5 | 21 | 204 | 11 | 189 | 7.38e-47 | 153 |
| MS.gene87043.t1 | MTR_1g014160 | 39.474 | 190 | 89 | 7 | 33 | 204 | 59 | 240 | 1.14e-28 | 108 |
| MS.gene87043.t1 | MTR_5g074550 | 33.889 | 180 | 105 | 5 | 33 | 203 | 17 | 191 | 2.87e-25 | 98.2 |
| MS.gene87043.t1 | MTR_2g103840 | 31.250 | 176 | 113 | 5 | 38 | 209 | 33 | 204 | 1.15e-22 | 92.0 |
| MS.gene87043.t1 | MTR_4g010180 | 28.495 | 186 | 127 | 5 | 27 | 209 | 11 | 193 | 3.17e-22 | 90.9 |
| MS.gene87043.t1 | MTR_5g074560 | 31.214 | 173 | 109 | 5 | 33 | 203 | 20 | 184 | 1.47e-19 | 83.2 |
| MS.gene87043.t1 | MTR_2g103850 | 27.684 | 177 | 120 | 5 | 38 | 210 | 34 | 206 | 1.95e-17 | 78.2 |
| MS.gene87043.t1 | MTR_0650s0010 | 28.125 | 192 | 127 | 5 | 28 | 209 | 12 | 202 | 1.96e-17 | 77.8 |
| MS.gene87043.t1 | MTR_8g099000 | 27.513 | 189 | 117 | 7 | 36 | 206 | 45 | 231 | 2.04e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87043.t1 | AT5G01750 | 56.132 | 212 | 91 | 1 | 2 | 213 | 8 | 217 | 2.27e-94 | 275 |
| MS.gene87043.t1 | AT3G11740 | 60.847 | 189 | 73 | 1 | 23 | 210 | 3 | 191 | 1.67e-86 | 254 |
| MS.gene87043.t1 | AT2G14560 | 50.244 | 205 | 100 | 1 | 20 | 224 | 4 | 206 | 9.46e-74 | 223 |
| MS.gene87043.t1 | AT1G33840 | 50.711 | 211 | 100 | 2 | 1 | 207 | 1 | 211 | 3.56e-73 | 222 |
| MS.gene87043.t1 | AT2G14560 | 50.244 | 205 | 100 | 1 | 20 | 224 | 64 | 266 | 1.45e-72 | 222 |
| MS.gene87043.t1 | AT5G01750 | 53.293 | 167 | 76 | 1 | 2 | 168 | 8 | 172 | 5.59e-68 | 207 |
| MS.gene87043.t1 | AT2G14560 | 50.667 | 150 | 74 | 0 | 20 | 169 | 4 | 153 | 1.71e-56 | 177 |
| MS.gene87043.t1 | AT2G14560 | 50.667 | 150 | 74 | 0 | 20 | 169 | 64 | 213 | 3.47e-55 | 176 |
| MS.gene87043.t1 | AT1G33840 | 46.821 | 173 | 88 | 2 | 1 | 169 | 1 | 173 | 4.57e-54 | 172 |
| MS.gene87043.t1 | AT3G16900 | 41.146 | 192 | 90 | 5 | 17 | 207 | 11 | 180 | 2.59e-47 | 154 |
| MS.gene87043.t1 | AT3G56180 | 35.829 | 187 | 115 | 2 | 22 | 205 | 17 | 201 | 1.50e-36 | 127 |
| MS.gene87043.t1 | AT3G56180 | 35.294 | 187 | 114 | 3 | 22 | 205 | 17 | 199 | 2.96e-34 | 122 |
| MS.gene87043.t1 | AT3G10986 | 31.579 | 190 | 124 | 3 | 22 | 205 | 3 | 192 | 1.19e-28 | 107 |
| MS.gene87043.t1 | AT3G15810 | 28.249 | 177 | 121 | 3 | 36 | 210 | 33 | 205 | 1.01e-23 | 95.1 |
| MS.gene87043.t1 | AT1G80120 | 30.556 | 180 | 116 | 4 | 36 | 210 | 19 | 194 | 7.78e-18 | 79.0 |
| MS.gene87043.t1 | AT2G30270 | 28.333 | 180 | 115 | 6 | 26 | 203 | 12 | 179 | 9.30e-18 | 78.2 |
| MS.gene87043.t1 | AT2G05910 | 26.178 | 191 | 122 | 6 | 28 | 210 | 9 | 188 | 5.28e-16 | 73.9 |
| MS.gene87043.t1 | AT2G38640 | 29.310 | 174 | 114 | 5 | 36 | 206 | 25 | 192 | 8.64e-15 | 70.5 |
| MS.gene87043.t1 | AT5G20640 | 25.248 | 202 | 134 | 5 | 23 | 209 | 12 | 211 | 1.05e-14 | 70.9 |
Find 54 sgRNAs with CRISPR-Local
Find 146 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATATTGTCTTCAAAGTTAA+AGG | 0.162900 | 7.4:-32389727 | MS.gene87043:CDS |
| TTTGGTCTTCAATTGCATTA+TGG | 0.249654 | 7.4:+32387836 | None:intergenic |
| GAAGTCACAAACATCTTCTT+TGG | 0.264338 | 7.4:+32387788 | None:intergenic |
| AGCAAGAAACACGTCTAATT+TGG | 0.276680 | 7.4:+32387818 | None:intergenic |
| GTGCTTCCGACCACCATATT+TGG | 0.296063 | 7.4:-32389847 | MS.gene87043:CDS |
| TGCTCCATATCCATTGGATT+TGG | 0.348058 | 7.4:-32389812 | MS.gene87043:CDS |
| ACAATATTGAGGGCCAAATA+TGG | 0.348290 | 7.4:+32389834 | None:intergenic |
| ACAGCCAAATCCAATGGATA+TGG | 0.371690 | 7.4:+32389808 | None:intergenic |
| GAAGAAAAGGGAAGTGAATC+AGG | 0.376536 | 7.4:-32387209 | MS.gene87043:CDS |
| GATTGGTAAAGACCATTTCA+TGG | 0.376637 | 7.4:-32387303 | MS.gene87043:CDS |
| GGATTTGGCTGTGGTCAAAA+AGG | 0.380756 | 7.4:-32389797 | MS.gene87043:CDS |
| TGAGATTAACAGTGAAGAAA+AGG | 0.382281 | 7.4:-32387222 | MS.gene87043:CDS |
| CTTTCGTGACCGCCGTGTCT+TGG | 0.400002 | 7.4:-32389692 | MS.gene87043:CDS |
| AACAATGTTGTTTGATTCAC+CGG | 0.422881 | 7.4:+32387722 | None:intergenic |
| GAGATTAACAGTGAAGAAAA+GGG | 0.427156 | 7.4:-32387221 | MS.gene87043:CDS |
| GTTTGATTCACCGGCATAAA+CGG | 0.431148 | 7.4:+32387731 | None:intergenic |
| TTGCGACGTAGGGTGGTGAT+AGG | 0.450531 | 7.4:+32389652 | None:intergenic |
| ACTTCAAAGTCAAAGGTAGT+TGG | 0.472279 | 7.4:-32387770 | MS.gene87043:CDS |
| ATATCCATTGGATTTGGCTG+TGG | 0.476662 | 7.4:-32389806 | MS.gene87043:CDS |
| TGATCGGTGGGAAGCTTACA+TGG | 0.483103 | 7.4:-32387907 | MS.gene87043:CDS |
| ATGAAAGCATAATCAACATT+GGG | 0.484955 | 7.4:+32387269 | None:intergenic |
| ATATTGTGCTCCATATCCAT+TGG | 0.499976 | 7.4:-32389818 | MS.gene87043:CDS |
| TGCCTCTGCACCACCGATGT+CGG | 0.506015 | 7.4:-32389869 | MS.gene87043:CDS |
| TGTTGATTATGCTTTCATAG+TGG | 0.508319 | 7.4:-32387264 | MS.gene87043:CDS |
| TATGAAAGCATAATCAACAT+TGG | 0.516780 | 7.4:+32387268 | None:intergenic |
| GCAGATGGTTGTGGTTGATA+AGG | 0.518139 | 7.4:+32389889 | None:intergenic |
| CGATCTTGCACCGTTTATGC+CGG | 0.523467 | 7.4:-32387741 | MS.gene87043:CDS |
| ATCAAACAACATTGTTGCAC+AGG | 0.532488 | 7.4:-32387715 | MS.gene87043:intron |
| GATAAACTGTGACCATGAAA+TGG | 0.538015 | 7.4:+32387291 | None:intergenic |
| GGATATGGAGCACAATATTG+AGG | 0.540481 | 7.4:+32389823 | None:intergenic |
| GTTTGTGACTTCAAAGTCAA+AGG | 0.540662 | 7.4:-32387777 | MS.gene87043:CDS |
| CACCGACATCGGTGGTGCAG+AGG | 0.548461 | 7.4:+32389867 | None:intergenic |
| GGTGCAGAGGCAGATGGTTG+TGG | 0.549880 | 7.4:+32389880 | None:intergenic |
| TTGAAGGTACCTTGCGACGT+AGG | 0.551744 | 7.4:+32389641 | None:intergenic |
| TGAAGGTACCTTGCGACGTA+GGG | 0.554387 | 7.4:+32389642 | None:intergenic |
| GATATGGAGCACAATATTGA+GGG | 0.554691 | 7.4:+32389824 | None:intergenic |
| TTGACCACAGCCAAATCCAA+TGG | 0.558143 | 7.4:+32389802 | None:intergenic |
| CAAGACACGGCGGTCACGAA+AGG | 0.581276 | 7.4:+32389693 | None:intergenic |
| AATGACTATGCATGATCGGT+GGG | 0.582075 | 7.4:-32387919 | MS.gene87043:CDS |
| TAATGACTATGCATGATCGG+TGG | 0.599736 | 7.4:-32387920 | MS.gene87043:CDS |
| TGCGACGTAGGGTGGTGATA+GGG | 0.606682 | 7.4:+32389653 | None:intergenic |
| ATCGGTGGTGCAGAGGCAGA+TGG | 0.609454 | 7.4:+32389874 | None:intergenic |
| GTCGGAAGCACCGACATCGG+TGG | 0.614411 | 7.4:+32389859 | None:intergenic |
| TGAGGGCCAAATATGGTGGT+CGG | 0.625346 | 7.4:+32389841 | None:intergenic |
| AGGTACCTTGCGACGTAGGG+TGG | 0.633675 | 7.4:+32389645 | None:intergenic |
| TATCACCACCCTACGTCGCA+AGG | 0.636481 | 7.4:-32389650 | MS.gene87043:intron |
| AGATAATGACTATGCATGAT+CGG | 0.641095 | 7.4:-32387923 | MS.gene87043:CDS |
| AAGGTGATAGCAATTTCAGA+CGG | 0.662704 | 7.4:-32389778 | MS.gene87043:CDS |
| ATATTGAGGGCCAAATATGG+TGG | 0.664652 | 7.4:+32389837 | None:intergenic |
| GTGGTCGGAAGCACCGACAT+CGG | 0.667721 | 7.4:+32389856 | None:intergenic |
| CTGCGGCATCAACCAAGACA+CGG | 0.671998 | 7.4:+32389680 | None:intergenic |
| GATCGGTGGGAAGCTTACAT+GGG | 0.678160 | 7.4:-32387906 | MS.gene87043:CDS |
| GGTGGTGATAGGGTTATCTG+CGG | 0.701861 | 7.4:+32389663 | None:intergenic |
| CGGCATCAACCAAGACACGG+CGG | 0.795295 | 7.4:+32389683 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCTTATAATTTCAAAATA+GGG | + | chr7.4:32388591-32388610 | None:intergenic | 10.0% |
| !!! | AAAAATATTTTTAGTTTGTT+TGG | + | chr7.4:32388753-32388772 | None:intergenic | 10.0% |
| !!! | ATAATTCTTTTGATTTTTTT+AGG | + | chr7.4:32387839-32387858 | None:intergenic | 10.0% |
| !!! | TAATTCTTTTGATTTTTTTA+GGG | + | chr7.4:32387838-32387857 | None:intergenic | 10.0% |
| !!! | TGTATTTTTAAAATTTACAA+AGG | - | chr7.4:32388468-32388487 | MS.gene87043:intron | 10.0% |
| !!! | TTGTAAATTTTAAAAATACA+GGG | + | chr7.4:32388468-32388487 | None:intergenic | 10.0% |
| !!! | TTTGTAAATTTTAAAAATAC+AGG | + | chr7.4:32388469-32388488 | None:intergenic | 10.0% |
| !! | ATCATAAATATTTCAAATAC+AGG | - | chr7.4:32388054-32388073 | MS.gene87043:intron | 15.0% |
| !! | CATTCTTATAATTTCAAAAT+AGG | + | chr7.4:32388592-32388611 | None:intergenic | 15.0% |
| !!! | TTCCAAAATTTTATAATCTA+GGG | + | chr7.4:32388562-32388581 | None:intergenic | 15.0% |
| !!! | TTGAAACTTTTTTTTTTTTG+AGG | - | chr7.4:32389535-32389554 | MS.gene87043:intron | 15.0% |
| !!! | TTGAATGTTAGTATAAATTT+TGG | - | chr7.4:32388434-32388453 | MS.gene87043:intron | 15.0% |
| !!! | TTGACTATTACTTTTTTTTT+TGG | + | chr7.4:32387572-32387591 | None:intergenic | 15.0% |
| !!! | TTTCCAAAATTTTATAATCT+AGG | + | chr7.4:32388563-32388582 | None:intergenic | 15.0% |
| !!! | TTTTAAAAGAAATTCCAAAT+TGG | - | chr7.4:32388505-32388524 | MS.gene87043:intron | 15.0% |
| !! | AAAATATATAAGGACCAATT+TGG | + | chr7.4:32388522-32388541 | None:intergenic | 20.0% |
| !! | AATATTGTCTTCAAAGTTAA+AGG | - | chr7.4:32387346-32387365 | MS.gene87043:intron | 20.0% |
| !! | CAAATGAAAAAGATTTGAAA+AGG | - | chr7.4:32388664-32388683 | MS.gene87043:intron | 20.0% |
| !! | TCCAGTGATAATTAAATTAA+GGG | + | chr7.4:32389667-32389686 | None:intergenic | 20.0% |
| !! | TTGCATATCAATTAAAACTT+AGG | + | chr7.4:32388003-32388022 | None:intergenic | 20.0% |
| !! | TTTGTCAAATAAATGTCATA+TGG | + | chr7.4:32388982-32389001 | None:intergenic | 20.0% |
| !!! | AACCCTAGATTATAAAATTT+TGG | - | chr7.4:32388557-32388576 | MS.gene87043:intron | 20.0% |
| !!! | AATTAACAAGTCAACTTTTA+TGG | - | chr7.4:32389698-32389717 | MS.gene87043:CDS | 20.0% |
| !!! | ACAAAGAAGAAATTTTATCT+TGG | - | chr7.4:32389493-32389512 | MS.gene87043:intron | 20.0% |
| !!! | ACTTGTTAATGATTCAAAAA+AGG | + | chr7.4:32389619-32389638 | None:intergenic | 20.0% |
| !!! | ATTTTTAGTTTGTTTGGATA+GGG | + | chr7.4:32388747-32388766 | None:intergenic | 20.0% |
| !!! | CAAAGAAGAAATTTTATCTT+GGG | - | chr7.4:32389494-32389513 | MS.gene87043:intron | 20.0% |
| !!! | TATTTTTAGTTTGTTTGGAT+AGG | + | chr7.4:32388748-32388767 | None:intergenic | 20.0% |
| !!! | TTACTTTTTTTTTTGGAGAA+AGG | + | chr7.4:32387565-32387584 | None:intergenic | 20.0% |
| !!! | TTAGTATAAATTTTGGAGAT+GGG | - | chr7.4:32388441-32388460 | MS.gene87043:intron | 20.0% |
| !!! | TTTTCCATTGTTTGAATTAT+GGG | - | chr7.4:32389060-32389079 | MS.gene87043:intron | 20.0% |
| !!! | TTTTGATTATTCTGATAGAA+AGG | - | chr7.4:32387760-32387779 | MS.gene87043:CDS | 20.0% |
| !!! | TTTTTTTTTCTTTCTAATCG+TGG | + | chr7.4:32388382-32388401 | None:intergenic | 20.0% |
| ! | AAAACTAAATATTCGCTTGT+TGG | + | chr7.4:32389411-32389430 | None:intergenic | 25.0% |
| ! | ACCCTTAATTTAATTATCAC+TGG | - | chr7.4:32389663-32389682 | MS.gene87043:CDS | 25.0% |
| ! | ATCCAATAAAGTTGTACTAT+TGG | - | chr7.4:32389124-32389143 | MS.gene87043:intron | 25.0% |
| ! | CAACTAATATTAGACAACTT+TGG | + | chr7.4:32388321-32388340 | None:intergenic | 25.0% |
| ! | CATAATTCAAACAATGGAAA+AGG | + | chr7.4:32389061-32389080 | None:intergenic | 25.0% |
| ! | GAAAAAGATTTGAAAAGGAA+AGG | - | chr7.4:32388669-32388688 | MS.gene87043:intron | 25.0% |
| ! | GTCCAGTGATAATTAAATTA+AGG | + | chr7.4:32389668-32389687 | None:intergenic | 25.0% |
| ! | TCACCTAAGAATAAAACTAT+GGG | - | chr7.4:32388862-32388881 | MS.gene87043:intron | 25.0% |
| ! | TTCACCTAAGAATAAAACTA+TGG | - | chr7.4:32388861-32388880 | MS.gene87043:intron | 25.0% |
| !! | ATGAAAGCATAATCAACATT+GGG | + | chr7.4:32389807-32389826 | None:intergenic | 25.0% |
| !! | CTTTTCCATTGTTTGAATTA+TGG | - | chr7.4:32389059-32389078 | MS.gene87043:intron | 25.0% |
| !! | TATGAAAGCATAATCAACAT+TGG | + | chr7.4:32389808-32389827 | None:intergenic | 25.0% |
| !! | TTTTCGGACATTAAATATTG+AGG | + | chr7.4:32388357-32388376 | None:intergenic | 25.0% |
| !!! | ACTTCTTAAAAAGTGTCTTA+AGG | + | chr7.4:32389473-32389492 | None:intergenic | 25.0% |
| !!! | CTTCTTAAAAAGTGTCTTAA+GGG | + | chr7.4:32389472-32389491 | None:intergenic | 25.0% |
| !!! | GTTAGTATAAATTTTGGAGA+TGG | - | chr7.4:32388440-32388459 | MS.gene87043:intron | 25.0% |
| !!! | TTACTTGATGAAGTTTTGTT+CGG | - | chr7.4:32389888-32389907 | MS.gene87043:CDS | 25.0% |
| !!! | TTTTTTTTATGTTAACCGTC+CGG | - | chr7.4:32388769-32388788 | MS.gene87043:intron | 25.0% |
| AAAGCCCATAATTCAAACAA+TGG | + | chr7.4:32389067-32389086 | None:intergenic | 30.0% | |
| AATTCAAACAATGGAAAAGG+AGG | + | chr7.4:32389058-32389077 | None:intergenic | 30.0% | |
| AGATAATGACTATGCATGAT+CGG | - | chr7.4:32389150-32389169 | MS.gene87043:intron | 30.0% | |
| ATGATTGGACAAAAACAATG+AGG | + | chr7.4:32388276-32388295 | None:intergenic | 30.0% | |
| CAAATACAGGTATAAAAGTG+AGG | - | chr7.4:32388067-32388086 | MS.gene87043:intron | 30.0% | |
| CAATCATAAGAGGAGAAAAA+CGG | - | chr7.4:32388289-32388308 | MS.gene87043:intron | 30.0% | |
| CACCAATAGTACAACTTTAT+TGG | + | chr7.4:32389129-32389148 | None:intergenic | 30.0% | |
| GAGATTAACAGTGAAGAAAA+GGG | - | chr7.4:32389852-32389871 | MS.gene87043:CDS | 30.0% | |
| TGAGATTAACAGTGAAGAAA+AGG | - | chr7.4:32389851-32389870 | MS.gene87043:CDS | 30.0% | |
| ! | AACAATGTTGTTTGATTCAC+CGG | + | chr7.4:32389354-32389373 | None:intergenic | 30.0% |
| ! | TATTCGCTTGTTGGTTATAT+AGG | + | chr7.4:32389402-32389421 | None:intergenic | 30.0% |
| ! | TGTTGATTATGCTTTCATAG+TGG | - | chr7.4:32389809-32389828 | MS.gene87043:CDS | 30.0% |
| ! | TTTGGTCTTCAATTGCATTA+TGG | + | chr7.4:32389240-32389259 | None:intergenic | 30.0% |
| !! | TGTTTTTGTCCAATCATAAG+AGG | - | chr7.4:32388279-32388298 | MS.gene87043:intron | 30.0% |
| !!! | AGACCCATAGTTTTATTCTT+AGG | + | chr7.4:32388868-32388887 | None:intergenic | 30.0% |
| !!! | TACTTGATGAAGTTTTGTTC+GGG | - | chr7.4:32389889-32389908 | MS.gene87043:CDS | 30.0% |
| AAATATTACCCCCTCTTAGT+CGG | + | chr7.4:32388153-32388172 | None:intergenic | 35.0% | |
| AAGGTGATAGCAATTTCAGA+CGG | - | chr7.4:32387295-32387314 | MS.gene87043:CDS | 35.0% | |
| ACAATATTGAGGGCCAAATA+TGG | + | chr7.4:32387242-32387261 | None:intergenic | 35.0% | |
| ACAGGTATAAAAGTGAGGTT+GGG | - | chr7.4:32388072-32388091 | MS.gene87043:intron | 35.0% | |
| ACCTTGATATGTCATAGTGT+CGG | + | chr7.4:32388129-32388148 | None:intergenic | 35.0% | |
| ACTTCAAAGTCAAAGGTAGT+TGG | - | chr7.4:32389303-32389322 | MS.gene87043:intron | 35.0% | |
| AGAAGAGAGAATAACGTTGA+AGG | + | chr7.4:32387451-32387470 | None:intergenic | 35.0% | |
| AGCAAGAAACACGTCTAATT+TGG | + | chr7.4:32389258-32389277 | None:intergenic | 35.0% | |
| ATATTGTGCTCCATATCCAT+TGG | - | chr7.4:32387255-32387274 | MS.gene87043:CDS | 35.0% | |
| ATCAAACAACATTGTTGCAC+AGG | - | chr7.4:32389358-32389377 | MS.gene87043:intron | 35.0% | |
| GAAGTCACAAACATCTTCTT+TGG | + | chr7.4:32389288-32389307 | None:intergenic | 35.0% | |
| GATAAACTGTGACCATGAAA+TGG | + | chr7.4:32389785-32389804 | None:intergenic | 35.0% | |
| GATATGGAGCACAATATTGA+GGG | + | chr7.4:32387252-32387271 | None:intergenic | 35.0% | |
| GATTGGTAAAGACCATTTCA+TGG | - | chr7.4:32389770-32389789 | MS.gene87043:CDS | 35.0% | |
| GTTTGTGACTTCAAAGTCAA+AGG | - | chr7.4:32389296-32389315 | MS.gene87043:intron | 35.0% | |
| GTTTGTTTGGATAGGGTAAT+GGG | + | chr7.4:32388740-32388759 | None:intergenic | 35.0% | |
| TACAGGTATAAAAGTGAGGT+TGG | - | chr7.4:32388071-32388090 | MS.gene87043:intron | 35.0% | |
| ! | ACTGTTCAGAGTCTTTTGAT+TGG | - | chr7.4:32389753-32389772 | MS.gene87043:CDS | 35.0% |
| ! | AGTTTGTTTGGATAGGGTAA+TGG | + | chr7.4:32388741-32388760 | None:intergenic | 35.0% |
| ! | CGTTTTTCTCCTCTTATGAT+TGG | + | chr7.4:32388291-32388310 | None:intergenic | 35.0% |
| ! | CTTTCTAATCGTGGCATTTT+CGG | + | chr7.4:32388373-32388392 | None:intergenic | 35.0% |
| !!! | ACTTGATGAAGTTTTGTTCG+GGG | - | chr7.4:32389890-32389909 | MS.gene87043:CDS | 35.0% |
| AATGACTATGCATGATCGGT+GGG | - | chr7.4:32389154-32389173 | MS.gene87043:intron | 40.0% | |
| ACAGCCAAATCCAATGGATA+TGG | + | chr7.4:32387268-32387287 | None:intergenic | 40.0% | |
| ACATGTGAGTATGAGAGAGA+TGG | + | chr7.4:32388224-32388243 | None:intergenic | 40.0% | |
| AGCCCCATTCTCTTAAAAAC+CGG | + | chr7.4:32388791-32388810 | None:intergenic | 40.0% | |
| AGGAGAGAAAGAAGAAGAGA+GGG | + | chr7.4:32388256-32388275 | None:intergenic | 40.0% | |
| ATATCAAGGTTCCGACTAAG+AGG | - | chr7.4:32388139-32388158 | MS.gene87043:intron | 40.0% | |
| ATATCCATTGGATTTGGCTG+TGG | - | chr7.4:32387267-32387286 | MS.gene87043:CDS | 40.0% | |
| ATATTGAGGGCCAAATATGG+TGG | + | chr7.4:32387239-32387258 | None:intergenic | 40.0% | |
| CCATTCTCTTAAAAACCGGA+CGG | + | chr7.4:32388787-32388806 | None:intergenic | 40.0% | |
| CCTTGATATGTCATAGTGTC+GGG | + | chr7.4:32388128-32388147 | None:intergenic | 40.0% | |
| GAAGAAAAGGGAAGTGAATC+AGG | - | chr7.4:32389864-32389883 | MS.gene87043:CDS | 40.0% | |
| GGATATGGAGCACAATATTG+AGG | + | chr7.4:32387253-32387272 | None:intergenic | 40.0% | |
| GTTTGATTCACCGGCATAAA+CGG | + | chr7.4:32389345-32389364 | None:intergenic | 40.0% | |
| TAATGACTATGCATGATCGG+TGG | - | chr7.4:32389153-32389172 | MS.gene87043:intron | 40.0% | |
| TACCTAATGACGAATCGTTC+AGG | + | chr7.4:32388891-32388910 | None:intergenic | 40.0% | |
| TATAAAAGTGAGGTTGGGTG+AGG | - | chr7.4:32388077-32388096 | MS.gene87043:intron | 40.0% | |
| TATCAAGGTTCCGACTAAGA+GGG | - | chr7.4:32388140-32388159 | MS.gene87043:intron | 40.0% | |
| TCATGCTAACAAGTGCTCTT+AGG | + | chr7.4:32389644-32389663 | None:intergenic | 40.0% | |
| TGCTCCATATCCATTGGATT+TGG | - | chr7.4:32387261-32387280 | MS.gene87043:CDS | 40.0% | |
| !! | CGTCCGGTTTTTAAGAGAAT+GGG | - | chr7.4:32388785-32388804 | MS.gene87043:intron | 40.0% |
| !! | GTCCGGTTTTTAAGAGAATG+GGG | - | chr7.4:32388786-32388805 | MS.gene87043:intron | 40.0% |
| !!! | CTTGATGAAGTTTTGTTCGG+GGG | - | chr7.4:32389891-32389910 | MS.gene87043:CDS | 40.0% |
| AGAATGGGGCTCTCATAGTT+TGG | - | chr7.4:32388800-32388819 | MS.gene87043:intron | 45.0% | |
| ATCAAGGTTCCGACTAAGAG+GGG | - | chr7.4:32388141-32388160 | MS.gene87043:intron | 45.0% | |
| CCCGACACTATGACATATCA+AGG | - | chr7.4:32388125-32388144 | MS.gene87043:intron | 45.0% | |
| CTCCTGAACGATTCGTCATT+AGG | - | chr7.4:32388886-32388905 | MS.gene87043:intron | 45.0% | |
| GAGGAGAGAAAGAAGAAGAG+AGG | + | chr7.4:32388257-32388276 | None:intergenic | 45.0% | |
| GGATTTGGCTGTGGTCAAAA+AGG | - | chr7.4:32387276-32387295 | MS.gene87043:CDS | 45.0% | |
| TGAGGATTGAGTGTAGCAGA+AGG | - | chr7.4:32388095-32388114 | MS.gene87043:intron | 45.0% | |
| TTGACCACAGCCAAATCCAA+TGG | + | chr7.4:32387274-32387293 | None:intergenic | 45.0% | |
| ! | GCAGATGGTTGTGGTTGATA+AGG | + | chr7.4:32387187-32387206 | None:intergenic | 45.0% |
| !! | CCGTCCGGTTTTTAAGAGAA+TGG | - | chr7.4:32388784-32388803 | MS.gene87043:intron | 45.0% |
| !!! | AATTTCTTTTAAAAATTTAT+AGG | + | chr7.4:32388499-32388518 | None:intergenic | 5.0% |
| !!! | TTTTGAAAAAAAAATATATA+AGG | + | chr7.4:32388532-32388551 | None:intergenic | 5.0% |
| CGATCTTGCACCGTTTATGC+CGG | - | chr7.4:32389332-32389351 | MS.gene87043:intron | 50.0% | |
| GATCGGTGGGAAGCTTACAT+GGG | - | chr7.4:32389167-32389186 | MS.gene87043:intron | 50.0% | |
| GGTGGTGATAGGGTTATCTG+CGG | + | chr7.4:32387413-32387432 | None:intergenic | 50.0% | |
| GTGCTTCCGACCACCATATT+TGG | - | chr7.4:32387226-32387245 | MS.gene87043:CDS | 50.0% | |
| TCAAGGTTCCGACTAAGAGG+GGG | - | chr7.4:32388142-32388161 | MS.gene87043:intron | 50.0% | |
| TGAGGGCCAAATATGGTGGT+CGG | + | chr7.4:32387235-32387254 | None:intergenic | 50.0% | |
| TGATCGGTGGGAAGCTTACA+TGG | - | chr7.4:32389166-32389185 | MS.gene87043:intron | 50.0% | |
| !! | TGAAGGTACCTTGCGACGTA+GGG | + | chr7.4:32387434-32387453 | None:intergenic | 50.0% |
| !! | TTGAAGGTACCTTGCGACGT+AGG | + | chr7.4:32387435-32387454 | None:intergenic | 50.0% |
| CTGCGGCATCAACCAAGACA+CGG | + | chr7.4:32387396-32387415 | None:intergenic | 55.0% | |
| TATCACCACCCTACGTCGCA+AGG | - | chr7.4:32387423-32387442 | MS.gene87043:intron | 55.0% | |
| TGCGACGTAGGGTGGTGATA+GGG | + | chr7.4:32387423-32387442 | None:intergenic | 55.0% | |
| TTGCGACGTAGGGTGGTGAT+AGG | + | chr7.4:32387424-32387443 | None:intergenic | 55.0% | |
| AGGTACCTTGCGACGTAGGG+TGG | + | chr7.4:32387431-32387450 | None:intergenic | 60.0% | |
| ATCGGTGGTGCAGAGGCAGA+TGG | + | chr7.4:32387202-32387221 | None:intergenic | 60.0% | |
| CAAGACACGGCGGTCACGAA+AGG | + | chr7.4:32387383-32387402 | None:intergenic | 60.0% | |
| CGGCATCAACCAAGACACGG+CGG | + | chr7.4:32387393-32387412 | None:intergenic | 60.0% | |
| CTTTCGTGACCGCCGTGTCT+TGG | - | chr7.4:32387381-32387400 | MS.gene87043:intron | 60.0% | |
| GGTGCAGAGGCAGATGGTTG+TGG | + | chr7.4:32387196-32387215 | None:intergenic | 60.0% | |
| TGCCTCTGCACCACCGATGT+CGG | - | chr7.4:32387204-32387223 | MS.gene87043:CDS | 60.0% | |
| !! | GTGGTCGGAAGCACCGACAT+CGG | + | chr7.4:32387220-32387239 | None:intergenic | 60.0% |
| CACCGACATCGGTGGTGCAG+AGG | + | chr7.4:32387209-32387228 | None:intergenic | 65.0% | |
| !! | GTCGGAAGCACCGACATCGG+TGG | + | chr7.4:32387217-32387236 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 32387175 | 32389920 | 32387175 | ID=MS.gene87043 |
| chr7.4 | mRNA | 32387175 | 32389920 | 32387175 | ID=MS.gene87043.t1;Parent=MS.gene87043 |
| chr7.4 | exon | 32389651 | 32389920 | 32389651 | ID=MS.gene87043.t1.exon1;Parent=MS.gene87043.t1 |
| chr7.4 | CDS | 32389651 | 32389920 | 32389651 | ID=cds.MS.gene87043.t1;Parent=MS.gene87043.t1 |
| chr7.4 | exon | 32387716 | 32387943 | 32387716 | ID=MS.gene87043.t1.exon2;Parent=MS.gene87043.t1 |
| chr7.4 | CDS | 32387716 | 32387943 | 32387716 | ID=cds.MS.gene87043.t1;Parent=MS.gene87043.t1 |
| chr7.4 | exon | 32387175 | 32387357 | 32387175 | ID=MS.gene87043.t1.exon3;Parent=MS.gene87043.t1 |
| chr7.4 | CDS | 32387175 | 32387357 | 32387175 | ID=cds.MS.gene87043.t1;Parent=MS.gene87043.t1 |
| Gene Sequence |
| Protein sequence |
