Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87040.t1 | XP_003623535.1 | 86.9 | 191 | 25 | 0 | 26 | 216 | 22 | 212 | 3.80E-86 | 327.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87040.t1 | Q9LZX1 | 57.7 | 189 | 80 | 0 | 27 | 215 | 27 | 215 | 6.6e-63 | 241.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87040.t1 | G7KW17 | 86.9 | 191 | 25 | 0 | 26 | 216 | 22 | 212 | 2.8e-86 | 327.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene87769 | MS.gene87040 | PPI |
| MS.gene87040 | MS.gene42096 | PPI |
| MS.gene26305 | MS.gene87040 | PPI |
| MS.gene009719 | MS.gene87040 | PPI |
| MS.gene42103 | MS.gene87040 | PPI |
| MS.gene42098 | MS.gene87040 | PPI |
| MS.gene87043 | MS.gene87040 | PPI |
| MS.gene99704 | MS.gene87040 | PPI |
| MS.gene87040 | MS.gene87768 | PPI |
| MS.gene051028 | MS.gene87040 | PPI |
| MS.gene87767 | MS.gene87040 | PPI |
| MS.gene87039 | MS.gene87040 | PPI |
| MS.gene42848 | MS.gene87040 | PPI |
| MS.gene42099 | MS.gene87040 | PPI |
| MS.gene42091 | MS.gene87040 | PPI |
| MS.gene87040 | MS.gene42099 | PPI |
| MS.gene87040 | MS.gene91238 | PPI |
| MS.gene42100 | MS.gene87040 | PPI |
| MS.gene87040 | MS.gene25045 | PPI |
| MS.gene87765 | MS.gene87040 | PPI |
| MS.gene87040 | MS.gene87046 | PPI |
| MS.gene99705 | MS.gene87040 | PPI |
| MS.gene87040 | MS.gene81036 | PPI |
| MS.gene87040 | MS.gene87038 | PPI |
| MS.gene87040 | MS.gene009718 | PPI |
| MS.gene91237 | MS.gene87040 | PPI |
| MS.gene87041 | MS.gene87040 | PPI |
| MS.gene87040 | MS.gene42100 | PPI |
| MS.gene87040 | MS.gene42097 | PPI |
| MS.gene87040 | MS.gene87762 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87040.t1 | MTR_7g072120 | 92.166 | 217 | 11 | 2 | 1 | 216 | 1 | 212 | 2.18e-145 | 404 |
| MS.gene87040.t1 | MTR_7g072170 | 84.259 | 216 | 28 | 2 | 1 | 215 | 1 | 211 | 5.14e-133 | 373 |
| MS.gene87040.t1 | MTR_7g072140 | 82.407 | 216 | 34 | 1 | 1 | 216 | 1 | 212 | 1.06e-131 | 369 |
| MS.gene87040.t1 | MTR_7g072270 | 79.167 | 216 | 39 | 2 | 1 | 216 | 1 | 210 | 7.19e-127 | 357 |
| MS.gene87040.t1 | MTR_7g072250 | 69.869 | 229 | 49 | 5 | 2 | 215 | 17 | 240 | 2.47e-107 | 308 |
| MS.gene87040.t1 | MTR_7g072270 | 78.363 | 171 | 31 | 2 | 1 | 171 | 1 | 165 | 9.48e-98 | 281 |
| MS.gene87040.t1 | MTR_4g029430 | 61.458 | 192 | 68 | 3 | 24 | 214 | 12 | 198 | 4.76e-83 | 245 |
| MS.gene87040.t1 | MTR_7g071710 | 83.761 | 117 | 19 | 0 | 98 | 214 | 1 | 117 | 1.05e-72 | 216 |
| MS.gene87040.t1 | MTR_1g014180 | 54.497 | 189 | 75 | 6 | 25 | 208 | 3 | 185 | 1.87e-60 | 187 |
| MS.gene87040.t1 | MTR_1g014150 | 46.486 | 185 | 90 | 5 | 26 | 208 | 12 | 189 | 4.21e-47 | 154 |
| MS.gene87040.t1 | MTR_1g014160 | 37.668 | 223 | 112 | 8 | 4 | 208 | 27 | 240 | 3.04e-30 | 112 |
| MS.gene87040.t1 | MTR_5g074550 | 35.556 | 180 | 102 | 5 | 37 | 207 | 17 | 191 | 2.49e-26 | 100 |
| MS.gene87040.t1 | MTR_2g103840 | 30.303 | 198 | 124 | 6 | 20 | 213 | 17 | 204 | 7.45e-25 | 97.8 |
| MS.gene87040.t1 | MTR_4g010180 | 28.261 | 184 | 126 | 5 | 31 | 211 | 11 | 191 | 1.14e-22 | 91.7 |
| MS.gene87040.t1 | MTR_5g074560 | 31.214 | 173 | 109 | 5 | 37 | 207 | 20 | 184 | 1.02e-20 | 85.9 |
| MS.gene87040.t1 | MTR_2g103850 | 27.317 | 205 | 139 | 6 | 15 | 214 | 7 | 206 | 4.74e-20 | 85.1 |
| MS.gene87040.t1 | MTR_0650s0010 | 28.571 | 189 | 120 | 6 | 32 | 208 | 12 | 197 | 2.53e-18 | 80.1 |
| MS.gene87040.t1 | MTR_8g099000 | 28.723 | 188 | 114 | 7 | 40 | 209 | 45 | 230 | 1.44e-14 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87040.t1 | AT5G01750 | 61.033 | 213 | 78 | 2 | 8 | 215 | 3 | 215 | 2.38e-101 | 292 |
| MS.gene87040.t1 | AT3G11740 | 65.285 | 193 | 65 | 2 | 26 | 216 | 2 | 194 | 1.94e-92 | 269 |
| MS.gene87040.t1 | AT2G14560 | 55.556 | 189 | 84 | 0 | 24 | 212 | 4 | 192 | 5.88e-78 | 233 |
| MS.gene87040.t1 | AT1G33840 | 52.381 | 210 | 98 | 2 | 1 | 209 | 1 | 209 | 1.49e-77 | 233 |
| MS.gene87040.t1 | AT2G14560 | 55.556 | 189 | 84 | 0 | 24 | 212 | 64 | 252 | 9.99e-77 | 232 |
| MS.gene87040.t1 | AT5G01750 | 59.412 | 170 | 64 | 2 | 8 | 172 | 3 | 172 | 4.00e-76 | 227 |
| MS.gene87040.t1 | AT2G14560 | 52.500 | 160 | 76 | 0 | 24 | 183 | 4 | 163 | 1.66e-62 | 192 |
| MS.gene87040.t1 | AT2G14560 | 52.500 | 160 | 76 | 0 | 24 | 183 | 64 | 223 | 2.58e-61 | 192 |
| MS.gene87040.t1 | AT1G33840 | 50.000 | 174 | 85 | 2 | 1 | 173 | 1 | 173 | 1.07e-60 | 188 |
| MS.gene87040.t1 | AT3G16900 | 41.935 | 186 | 87 | 4 | 27 | 211 | 15 | 180 | 1.39e-48 | 157 |
| MS.gene87040.t1 | AT3G56180 | 35.602 | 191 | 117 | 3 | 26 | 213 | 17 | 204 | 1.74e-38 | 132 |
| MS.gene87040.t1 | AT3G56180 | 34.574 | 188 | 116 | 3 | 26 | 210 | 17 | 200 | 3.42e-36 | 126 |
| MS.gene87040.t1 | AT3G10986 | 32.292 | 192 | 124 | 3 | 26 | 211 | 3 | 194 | 1.61e-31 | 114 |
| MS.gene87040.t1 | AT3G15810 | 30.508 | 177 | 117 | 3 | 40 | 214 | 33 | 205 | 2.11e-26 | 101 |
| MS.gene87040.t1 | AT1G80120 | 32.961 | 179 | 113 | 4 | 40 | 214 | 19 | 194 | 1.41e-20 | 86.3 |
| MS.gene87040.t1 | AT2G30270 | 30.000 | 180 | 112 | 6 | 30 | 207 | 12 | 179 | 8.75e-17 | 75.5 |
| MS.gene87040.t1 | AT2G38640 | 30.286 | 175 | 113 | 5 | 38 | 209 | 23 | 191 | 3.12e-16 | 74.3 |
| MS.gene87040.t1 | AT5G20640 | 24.873 | 197 | 131 | 5 | 27 | 208 | 12 | 206 | 6.17e-15 | 71.2 |
| MS.gene87040.t1 | AT2G05910 | 26.042 | 192 | 121 | 7 | 26 | 208 | 3 | 182 | 8.13e-15 | 70.5 |
| MS.gene87040.t1 | AT5G41590 | 22.222 | 216 | 153 | 5 | 9 | 209 | 3 | 218 | 9.03e-12 | 62.8 |
Find 54 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGGTCTTCATCTGGATTA+AGG | 0.216511 | 7.4:+32402518 | None:intergenic |
| AAAATCACAAACATCTTCTT+TGG | 0.257604 | 7.4:+32402470 | None:intergenic |
| TGATCGGTGGGAAGCTTATA+GGG | 0.299737 | 7.4:-32402589 | MS.gene87040:CDS |
| ATGATCGGTGGGAAGCTTAT+AGG | 0.312103 | 7.4:-32402590 | MS.gene87040:CDS |
| CATCTAATTTGGTCTTCATC+TGG | 0.334921 | 7.4:+32402511 | None:intergenic |
| GGATCTTGCCATCGTGAAAA+AGG | 0.339002 | 7.4:-32403255 | MS.gene87040:CDS |
| AGCTAGAAACACATCTAATT+TGG | 0.366171 | 7.4:+32402500 | None:intergenic |
| ACAGTATTGAGGACCGAATA+TGG | 0.368124 | 7.4:+32403292 | None:intergenic |
| GCAGATGGCTGTGGTTGATA+TGG | 0.388244 | 7.4:+32403344 | None:intergenic |
| CTTGCGACGGAGGGTGGTGA+TGG | 0.396422 | 7.4:+32403109 | None:intergenic |
| GAGGACCGAATATGGCGTTC+GGG | 0.411432 | 7.4:+32403300 | None:intergenic |
| GCAGCCCCGAACGCCATATT+CGG | 0.412629 | 7.4:-32403305 | MS.gene87040:CDS |
| ATCTGCATCTGCACCGATGC+AGG | 0.415902 | 7.4:-32403327 | MS.gene87040:CDS |
| TTCACGATGGCAAGATCCAC+TGG | 0.437250 | 7.4:+32403260 | None:intergenic |
| TTGCGACGGAGGGTGGTGAT+GGG | 0.452287 | 7.4:+32403110 | None:intergenic |
| TGAGGACCGAATATGGCGTT+CGG | 0.452612 | 7.4:+32403299 | None:intergenic |
| CGTGTCTTGCTTGATGCTGC+TGG | 0.455360 | 7.4:-32403137 | MS.gene87040:CDS |
| GCGTTCGGGGCTGCCTGCAT+CGG | 0.455509 | 7.4:+32403314 | None:intergenic |
| GGCGAAGTTTCCATCTGAAA+TGG | 0.475827 | 7.4:+32403226 | None:intergenic |
| CGATCTTGCATTGTTTATGC+TGG | 0.480226 | 7.4:-32402423 | MS.gene87040:CDS |
| AACATTGTCTTCAAAGTGAA+AGG | 0.488864 | 7.4:-32403185 | MS.gene87040:CDS |
| ATGAAAGCGTAGTCAACATT+GGG | 0.498681 | 7.4:+32402192 | None:intergenic |
| AAATTAGATGTGTTTCTAGC+TGG | 0.501483 | 7.4:-32402498 | MS.gene87040:CDS |
| TGATATGGCTGTGGTTGATA+AGG | 0.507394 | 7.4:+32403359 | None:intergenic |
| GATAAACCGTGACTGAGAAA+TGG | 0.513280 | 7.4:+32402214 | None:intergenic |
| CAAGCAAGACACGACGATCA+TGG | 0.522499 | 7.4:+32403147 | None:intergenic |
| TGTTGACTACGCTTTCATAG+TGG | 0.527609 | 7.4:-32402187 | MS.gene87040:CDS |
| ATCTAACCACATTGTTGCAC+AGG | 0.530405 | 7.4:-32402397 | MS.gene87040:intron |
| TATGAAAGCGTAGTCAACAT+TGG | 0.542595 | 7.4:+32402191 | None:intergenic |
| TAAAGTCAGAGGTAGTTGGT+TGG | 0.551193 | 7.4:-32402448 | MS.gene87040:CDS |
| TAAAGACCATTTCTCAGTCA+CGG | 0.553557 | 7.4:-32402220 | MS.gene87040:CDS |
| GGCTGTGGTTGATATGGCTG+TGG | 0.558387 | 7.4:+32403350 | None:intergenic |
| ATGGCAAGATCCACTGGATA+CGG | 0.564173 | 7.4:+32403266 | None:intergenic |
| TGCGACGGAGGGTGGTGATG+GGG | 0.564704 | 7.4:+32403111 | None:intergenic |
| CATCACCACCCTCCGTCGCA+AGG | 0.565107 | 7.4:-32403108 | MS.gene87040:intron |
| AAGGTGATGACCATTTCAGA+TGG | 0.578907 | 7.4:-32403236 | MS.gene87040:CDS |
| AGTGACTATGCATGATCGGT+GGG | 0.580863 | 7.4:-32402601 | MS.gene87040:CDS |
| GGTGCAGATGCAGATGGCTG+TGG | 0.586855 | 7.4:+32403335 | None:intergenic |
| GGATACGGAGCACAGTATTG+AGG | 0.603779 | 7.4:+32403281 | None:intergenic |
| TGCATCGGTGCAGATGCAGA+TGG | 0.610431 | 7.4:+32403329 | None:intergenic |
| TTGAACGTACCTTGCGACGG+AGG | 0.612314 | 7.4:+32403099 | None:intergenic |
| TAGTGACTATGCATGATCGG+TGG | 0.614019 | 7.4:-32402602 | MS.gene87040:CDS |
| TGAACGTACCTTGCGACGGA+GGG | 0.617417 | 7.4:+32403100 | None:intergenic |
| ACGTACCTTGCGACGGAGGG+TGG | 0.620243 | 7.4:+32403103 | None:intergenic |
| GATCGGTGGGAAGCTTATAG+GGG | 0.629822 | 7.4:-32402588 | MS.gene87040:CDS |
| AGGACCGAATATGGCGTTCG+GGG | 0.642653 | 7.4:+32403301 | None:intergenic |
| TAATTACCTGTGCAACAATG+TGG | 0.644297 | 7.4:+32402391 | None:intergenic |
| AGATAGTGACTATGCATGAT+CGG | 0.644746 | 7.4:-32402605 | MS.gene87040:CDS |
| ATACTGTGCTCCGTATCCAG+TGG | 0.648223 | 7.4:-32403276 | MS.gene87040:CDS |
| CAAGACACGACGATCATGGA+GGG | 0.648557 | 7.4:+32403151 | None:intergenic |
| GTTTCCGTTGACATCAGTGA+CGG | 0.656884 | 7.4:+32403205 | None:intergenic |
| TTCGCCGTCACTGATGTCAA+CGG | 0.668229 | 7.4:-32403209 | MS.gene87040:CDS |
| AAGTTGAACGTACCTTGCGA+CGG | 0.684930 | 7.4:+32403096 | None:intergenic |
| GCAAGACACGACGATCATGG+AGG | 0.713270 | 7.4:+32403150 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCATTGTTTTATTTTATTT+TGG | + | chr7.4:32402639-32402658 | None:intergenic | 10.0% |
| !! | AAAAATAAAAATGATCAATC+CGG | + | chr7.4:32402484-32402503 | None:intergenic | 15.0% |
| !! | ACAAAAATACTGAAATTATT+AGG | - | chr7.4:32402515-32402534 | MS.gene87040:CDS | 15.0% |
| !!! | AATAATTTCAGTATTTTTGT+AGG | + | chr7.4:32402515-32402534 | None:intergenic | 15.0% |
| !!! | TTTTAATTAATTACGTTGAT+TGG | - | chr7.4:32403173-32403192 | MS.gene87040:CDS | 15.0% |
| !! | AAAATAAAAATGATCAATCC+GGG | + | chr7.4:32402483-32402502 | None:intergenic | 20.0% |
| ! | AAAATCACAAACATCTTCTT+TGG | + | chr7.4:32403041-32403060 | None:intergenic | 25.0% |
| !! | ATTTAACAGTAATGTTTTCC+CGG | - | chr7.4:32402462-32402481 | MS.gene87040:CDS | 25.0% |
| !! | TAAGCAGAAATCAATTTTCA+TGG | - | chr7.4:32403211-32403230 | MS.gene87040:CDS | 25.0% |
| !!! | ATCAACATTTTGTTTTGTGA+GGG | - | chr7.4:32402657-32402676 | MS.gene87040:intron | 25.0% |
| AACATTGTCTTCAAAGTGAA+AGG | - | chr7.4:32402323-32402342 | MS.gene87040:intron | 30.0% | |
| AGCTAGAAACACATCTAATT+TGG | + | chr7.4:32403011-32403030 | None:intergenic | 30.0% | |
| CTATCTGCTACACAAAATAA+TGG | - | chr7.4:32402603-32402622 | MS.gene87040:CDS | 30.0% | |
| GGGAAAACATTACTGTTAAA+TGG | + | chr7.4:32402463-32402482 | None:intergenic | 30.0% | |
| TACTGAAATTATTAGGTCGA+AGG | - | chr7.4:32402522-32402541 | MS.gene87040:CDS | 30.0% | |
| TATACTCTTGTATACACAAG+AGG | + | chr7.4:32403148-32403167 | None:intergenic | 30.0% | |
| ! | TACTGAATTTTGTCATGTTG+TGG | - | chr7.4:32402877-32402896 | MS.gene87040:intron | 30.0% |
| !! | AAATTAGATGTGTTTCTAGC+TGG | - | chr7.4:32403010-32403029 | MS.gene87040:intron | 30.0% |
| !! | CACTGTTACGAGTATTTTAA+TGG | - | chr7.4:32403264-32403283 | MS.gene87040:CDS | 30.0% |
| !!! | ATTTTAAAGTCAGAGGTAGT+TGG | - | chr7.4:32403056-32403075 | MS.gene87040:intron | 30.0% |
| !!! | GATCAACATTTTGTTTTGTG+AGG | - | chr7.4:32402656-32402675 | MS.gene87040:intron | 30.0% |
| !!! | GTTTGTGATTTTAAAGTCAG+AGG | - | chr7.4:32403049-32403068 | MS.gene87040:intron | 30.0% |
| ACTATGAGCTCAACAATACA+TGG | - | chr7.4:32402711-32402730 | MS.gene87040:intron | 35.0% | |
| AGATAGTGACTATGCATGAT+CGG | - | chr7.4:32402903-32402922 | MS.gene87040:intron | 35.0% | |
| GTAACTAATACATGCTAGAG+AGG | + | chr7.4:32402778-32402797 | None:intergenic | 35.0% | |
| TAAAGACCATTTCTCAGTCA+CGG | - | chr7.4:32403288-32403307 | MS.gene87040:CDS | 35.0% | |
| TAATTACCTGTGCAACAATG+TGG | + | chr7.4:32403120-32403139 | None:intergenic | 35.0% | |
| ! | ATGAAAGCGTAGTCAACATT+GGG | + | chr7.4:32403319-32403338 | None:intergenic | 35.0% |
| ! | CATCTAATTTGGTCTTCATC+TGG | + | chr7.4:32403000-32403019 | None:intergenic | 35.0% |
| ! | TATGAAAGCGTAGTCAACAT+TGG | + | chr7.4:32403320-32403339 | None:intergenic | 35.0% |
| ! | TTTGGTCTTCATCTGGATTA+AGG | + | chr7.4:32402993-32403012 | None:intergenic | 35.0% |
| AAGGTGATGACCATTTCAGA+TGG | - | chr7.4:32402272-32402291 | MS.gene87040:intron | 40.0% | |
| ATCTAACCACATTGTTGCAC+AGG | - | chr7.4:32403111-32403130 | MS.gene87040:CDS | 40.0% | |
| ATGAGCTCAACAATACATGG+CGG | - | chr7.4:32402714-32402733 | MS.gene87040:intron | 40.0% | |
| CGATCTTGCATTGTTTATGC+TGG | - | chr7.4:32403085-32403104 | MS.gene87040:intron | 40.0% | |
| GATAAACCGTGACTGAGAAA+TGG | + | chr7.4:32403297-32403316 | None:intergenic | 40.0% | |
| TAAAGTCAGAGGTAGTTGGT+TGG | - | chr7.4:32403060-32403079 | MS.gene87040:intron | 40.0% | |
| TTACTTCATTCGCTTGTCTC+AGG | - | chr7.4:32402794-32402813 | MS.gene87040:intron | 40.0% | |
| ! | ACAGTATTGAGGACCGAATA+TGG | + | chr7.4:32402219-32402238 | None:intergenic | 40.0% |
| ! | TGATATGGCTGTGGTTGATA+AGG | + | chr7.4:32402152-32402171 | None:intergenic | 40.0% |
| ! | TGTTGACTACGCTTTCATAG+TGG | - | chr7.4:32403321-32403340 | MS.gene87040:CDS | 40.0% |
| AAGTTGAACGTACCTTGCGA+CGG | + | chr7.4:32402415-32402434 | None:intergenic | 45.0% | |
| AGTGACTATGCATGATCGGT+GGG | - | chr7.4:32402907-32402926 | MS.gene87040:intron | 45.0% | |
| ATGATCGGTGGGAAGCTTAT+AGG | - | chr7.4:32402918-32402937 | MS.gene87040:intron | 45.0% | |
| ATGGCAAGATCCACTGGATA+CGG | + | chr7.4:32402245-32402264 | None:intergenic | 45.0% | |
| GGATCTTGCCATCGTGAAAA+AGG | - | chr7.4:32402253-32402272 | MS.gene87040:CDS | 45.0% | |
| GGCGAAGTTTCCATCTGAAA+TGG | + | chr7.4:32402285-32402304 | None:intergenic | 45.0% | |
| GTTTCCGTTGACATCAGTGA+CGG | + | chr7.4:32402306-32402325 | None:intergenic | 45.0% | |
| TAGTGACTATGCATGATCGG+TGG | - | chr7.4:32402906-32402925 | MS.gene87040:intron | 45.0% | |
| TGATCGGTGGGAAGCTTATA+GGG | - | chr7.4:32402919-32402938 | MS.gene87040:intron | 45.0% | |
| !! | GGTCATCACCTTTTTCACGA+TGG | + | chr7.4:32402264-32402283 | None:intergenic | 45.0% |
| ATACTGTGCTCCGTATCCAG+TGG | - | chr7.4:32402232-32402251 | MS.gene87040:CDS | 50.0% | |
| CAAGACACGACGATCATGGA+GGG | + | chr7.4:32402360-32402379 | None:intergenic | 50.0% | |
| CAAGCAAGACACGACGATCA+TGG | + | chr7.4:32402364-32402383 | None:intergenic | 50.0% | |
| GATCGGTGGGAAGCTTATAG+GGG | - | chr7.4:32402920-32402939 | MS.gene87040:intron | 50.0% | |
| GGATACGGAGCACAGTATTG+AGG | + | chr7.4:32402230-32402249 | None:intergenic | 50.0% | |
| TGAGGACCGAATATGGCGTT+CGG | + | chr7.4:32402212-32402231 | None:intergenic | 50.0% | |
| TTCACGATGGCAAGATCCAC+TGG | + | chr7.4:32402251-32402270 | None:intergenic | 50.0% | |
| TTCGCCGTCACTGATGTCAA+CGG | - | chr7.4:32402299-32402318 | MS.gene87040:intron | 50.0% | |
| ! | GCAGATGGCTGTGGTTGATA+TGG | + | chr7.4:32402167-32402186 | None:intergenic | 50.0% |
| AGGACCGAATATGGCGTTCG+GGG | + | chr7.4:32402210-32402229 | None:intergenic | 55.0% | |
| CGTGTCTTGCTTGATGCTGC+TGG | - | chr7.4:32402371-32402390 | MS.gene87040:intron | 55.0% | |
| GAGGACCGAATATGGCGTTC+GGG | + | chr7.4:32402211-32402230 | None:intergenic | 55.0% | |
| GCAAGACACGACGATCATGG+AGG | + | chr7.4:32402361-32402380 | None:intergenic | 55.0% | |
| TGAACGTACCTTGCGACGGA+GGG | + | chr7.4:32402411-32402430 | None:intergenic | 55.0% | |
| TTGAACGTACCTTGCGACGG+AGG | + | chr7.4:32402412-32402431 | None:intergenic | 55.0% | |
| ! | ATCTGCATCTGCACCGATGC+AGG | - | chr7.4:32402181-32402200 | MS.gene87040:CDS | 55.0% |
| ! | GGCTGTGGTTGATATGGCTG+TGG | + | chr7.4:32402161-32402180 | None:intergenic | 55.0% |
| ! | TGCATCGGTGCAGATGCAGA+TGG | + | chr7.4:32402182-32402201 | None:intergenic | 55.0% |
| GCAGCCCCGAACGCCATATT+CGG | - | chr7.4:32402203-32402222 | MS.gene87040:CDS | 60.0% | |
| GGTGCAGATGCAGATGGCTG+TGG | + | chr7.4:32402176-32402195 | None:intergenic | 60.0% | |
| TTGCGACGGAGGGTGGTGAT+GGG | + | chr7.4:32402401-32402420 | None:intergenic | 60.0% | |
| ACGTACCTTGCGACGGAGGG+TGG | + | chr7.4:32402408-32402427 | None:intergenic | 65.0% | |
| CATCACCACCCTCCGTCGCA+AGG | - | chr7.4:32402400-32402419 | MS.gene87040:CDS | 65.0% | |
| CTTGCGACGGAGGGTGGTGA+TGG | + | chr7.4:32402402-32402421 | None:intergenic | 65.0% | |
| ! | TGCGACGGAGGGTGGTGATG+GGG | + | chr7.4:32402400-32402419 | None:intergenic | 65.0% |
| GCGTTCGGGGCTGCCTGCAT+CGG | + | chr7.4:32402197-32402216 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 32402140 | 32403390 | 32402140 | ID=MS.gene87040 |
| chr7.4 | mRNA | 32402140 | 32403390 | 32402140 | ID=MS.gene87040.t1;Parent=MS.gene87040 |
| chr7.4 | exon | 32403109 | 32403390 | 32403109 | ID=MS.gene87040.t1.exon1;Parent=MS.gene87040.t1 |
| chr7.4 | CDS | 32403109 | 32403390 | 32403109 | ID=cds.MS.gene87040.t1;Parent=MS.gene87040.t1 |
| chr7.4 | exon | 32402398 | 32402625 | 32402398 | ID=MS.gene87040.t1.exon2;Parent=MS.gene87040.t1 |
| chr7.4 | CDS | 32402398 | 32402625 | 32402398 | ID=cds.MS.gene87040.t1;Parent=MS.gene87040.t1 |
| chr7.4 | exon | 32402140 | 32402280 | 32402140 | ID=MS.gene87040.t1.exon3;Parent=MS.gene87040.t1 |
| chr7.4 | CDS | 32402140 | 32402280 | 32402140 | ID=cds.MS.gene87040.t1;Parent=MS.gene87040.t1 |
| Gene Sequence |
| Protein sequence |
