Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42096.t1 | XP_003623539.1 | 92.5 | 226 | 17 | 0 | 1 | 226 | 1 | 226 | 1.60E-114 | 422.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42096.t1 | Q9LZX1 | 56.1 | 212 | 91 | 1 | 2 | 213 | 8 | 217 | 1.1e-68 | 261.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42096.t1 | G7KW21 | 92.5 | 226 | 17 | 0 | 1 | 226 | 1 | 226 | 1.1e-114 | 422.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04932 | MS.gene42096 | 0.811333 | 7.38E-51 | -1.69E-46 |
| MS.gene049549 | MS.gene42096 | 0.812527 | 4.05E-51 | -1.69E-46 |
| MS.gene050809 | MS.gene42096 | 0.801225 | 9.95E-49 | -1.69E-46 |
| MS.gene051158 | MS.gene42096 | 0.828631 | 8.07E-55 | -1.69E-46 |
| MS.gene051385 | MS.gene42096 | 0.824267 | 8.86E-54 | -1.69E-46 |
| MS.gene051996 | MS.gene42096 | 0.844637 | 6.68E-59 | -1.69E-46 |
| MS.gene052211 | MS.gene42096 | 0.806261 | 8.96E-50 | -1.69E-46 |
| MS.gene052223 | MS.gene42096 | 0.846465 | 2.14E-59 | -1.69E-46 |
| MS.gene05233 | MS.gene42096 | 0.809556 | 1.79E-50 | -1.69E-46 |
| MS.gene05240 | MS.gene42096 | 0.846472 | 2.13E-59 | -1.69E-46 |
| MS.gene052414 | MS.gene42096 | -0.804854 | 1.77E-49 | -1.69E-46 |
| MS.gene05244 | MS.gene42096 | 0.82346 | 1.37E-53 | -1.69E-46 |
| MS.gene052706 | MS.gene42096 | 0.801311 | 9.56E-49 | -1.69E-46 |
| MS.gene053406 | MS.gene42096 | 0.858386 | 8.54E-63 | -1.69E-46 |
| MS.gene054120 | MS.gene42096 | 0.80202 | 6.84E-49 | -1.69E-46 |
| MS.gene054138 | MS.gene42096 | 0.813667 | 2.28E-51 | -1.69E-46 |
| MS.gene054146 | MS.gene42096 | 0.818636 | 1.77E-52 | -1.69E-46 |
| MS.gene054147 | MS.gene42096 | 0.821415 | 4.09E-53 | -1.69E-46 |
| MS.gene054277 | MS.gene42096 | 0.818389 | 2.01E-52 | -1.69E-46 |
| MS.gene054290 | MS.gene42096 | 0.818381 | 2.02E-52 | -1.69E-46 |
| MS.gene054421 | MS.gene42096 | 0.807222 | 5.62E-50 | -1.69E-46 |
| MS.gene054742 | MS.gene42096 | 0.888225 | 7.13E-73 | -1.69E-46 |
| MS.gene055240 | MS.gene42096 | 0.808768 | 2.63E-50 | -1.69E-46 |
| MS.gene055595 | MS.gene42096 | 0.811806 | 5.82E-51 | -1.69E-46 |
| MS.gene055597 | MS.gene42096 | 0.813892 | 2.03E-51 | -1.69E-46 |
| MS.gene055601 | MS.gene42096 | 0.820836 | 5.56E-53 | -1.69E-46 |
| MS.gene056076 | MS.gene42096 | 0.800012 | 1.76E-48 | -1.69E-46 |
| MS.gene056330 | MS.gene42096 | 0.886712 | 2.69E-72 | -1.69E-46 |
| MS.gene056680 | MS.gene42096 | 0.82494 | 6.15E-54 | -1.69E-46 |
| MS.gene056690 | MS.gene42096 | 0.833903 | 4.08E-56 | -1.69E-46 |
| MS.gene056691 | MS.gene42096 | 0.814023 | 1.90E-51 | -1.69E-46 |
| MS.gene056899 | MS.gene42096 | 0.824505 | 7.78E-54 | -1.69E-46 |
| MS.gene056920 | MS.gene42096 | 0.865571 | 5.36E-65 | -1.69E-46 |
| MS.gene056922 | MS.gene42096 | 0.80156 | 8.50E-49 | -1.69E-46 |
| MS.gene056923 | MS.gene42096 | 0.829306 | 5.54E-55 | -1.69E-46 |
| MS.gene056924 | MS.gene42096 | 0.832669 | 8.29E-56 | -1.69E-46 |
| MS.gene057544 | MS.gene42096 | 0.819163 | 1.34E-52 | -1.69E-46 |
| MS.gene058093 | MS.gene42096 | 0.801423 | 9.07E-49 | -1.69E-46 |
| MS.gene058177 | MS.gene42096 | 0.802692 | 4.97E-49 | -1.69E-46 |
| MS.gene058218 | MS.gene42096 | 0.83518 | 1.95E-56 | -1.69E-46 |
| MS.gene059037 | MS.gene42096 | 0.800056 | 1.72E-48 | -1.69E-46 |
| MS.gene059043 | MS.gene42096 | 0.816449 | 5.50E-52 | -1.69E-46 |
| MS.gene059328 | MS.gene42096 | 0.824441 | 8.06E-54 | -1.69E-46 |
| MS.gene059402 | MS.gene42096 | 0.809864 | 1.53E-50 | -1.69E-46 |
| MS.gene059420 | MS.gene42096 | -0.80072 | 1.26E-48 | -1.69E-46 |
| MS.gene059891 | MS.gene42096 | 0.807299 | 5.41E-50 | -1.69E-46 |
| MS.gene059892 | MS.gene42096 | 0.801838 | 7.45E-49 | -1.69E-46 |
| MS.gene059955 | MS.gene42096 | 0.806367 | 8.52E-50 | -1.69E-46 |
| MS.gene060087 | MS.gene42096 | 0.849687 | 2.76E-60 | -1.69E-46 |
| MS.gene060205 | MS.gene42096 | 0.800739 | 1.25E-48 | -1.69E-46 |
| MS.gene060578 | MS.gene42096 | 0.811474 | 6.88E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene42100 | MS.gene42096 | PPI |
| MS.gene87043 | MS.gene42096 | PPI |
| MS.gene87040 | MS.gene42096 | PPI |
| MS.gene87765 | MS.gene42096 | PPI |
| MS.gene87767 | MS.gene42096 | PPI |
| MS.gene42096 | MS.gene87762 | PPI |
| MS.gene42096 | MS.gene87038 | PPI |
| MS.gene91237 | MS.gene42096 | PPI |
| MS.gene87041 | MS.gene42096 | PPI |
| MS.gene99705 | MS.gene42096 | PPI |
| MS.gene009718 | MS.gene42096 | PPI |
| MS.gene87768 | MS.gene42096 | PPI |
| MS.gene42097 | MS.gene42096 | PPI |
| MS.gene009719 | MS.gene42096 | PPI |
| MS.gene42103 | MS.gene42096 | PPI |
| MS.gene87038 | MS.gene42096 | PPI |
| MS.gene42098 | MS.gene42096 | PPI |
| MS.gene87769 | MS.gene42096 | PPI |
| MS.gene42096 | MS.gene91238 | PPI |
| MS.gene42096 | MS.gene25045 | PPI |
| MS.gene99704 | MS.gene42096 | PPI |
| MS.gene42096 | MS.gene87046 | PPI |
| MS.gene26305 | MS.gene42096 | PPI |
| MS.gene051028 | MS.gene42096 | PPI |
| MS.gene87039 | MS.gene42096 | PPI |
| MS.gene42848 | MS.gene42096 | PPI |
| MS.gene42096 | MS.gene87768 | PPI |
| MS.gene42096 | MS.gene81036 | PPI |
| MS.gene42099 | MS.gene42096 | PPI |
| MS.gene42091 | MS.gene42096 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42096.t1 | MTR_7g072170 | 92.478 | 226 | 17 | 0 | 1 | 226 | 1 | 226 | 7.17e-160 | 441 |
| MS.gene42096.t1 | MTR_7g072140 | 82.464 | 211 | 37 | 0 | 1 | 211 | 1 | 211 | 8.13e-132 | 370 |
| MS.gene42096.t1 | MTR_7g072270 | 82.160 | 213 | 36 | 2 | 1 | 213 | 1 | 211 | 5.38e-130 | 365 |
| MS.gene42096.t1 | MTR_7g072120 | 83.019 | 212 | 34 | 2 | 1 | 211 | 1 | 211 | 1.54e-129 | 364 |
| MS.gene42096.t1 | MTR_7g072250 | 71.300 | 223 | 49 | 3 | 1 | 213 | 25 | 242 | 3.53e-110 | 316 |
| MS.gene42096.t1 | MTR_7g072270 | 81.437 | 167 | 29 | 2 | 1 | 167 | 1 | 165 | 4.37e-99 | 285 |
| MS.gene42096.t1 | MTR_4g029430 | 58.201 | 189 | 73 | 3 | 23 | 210 | 15 | 198 | 1.64e-75 | 227 |
| MS.gene42096.t1 | MTR_7g071710 | 82.051 | 117 | 21 | 0 | 94 | 210 | 1 | 117 | 5.21e-72 | 215 |
| MS.gene42096.t1 | MTR_1g014180 | 52.880 | 191 | 79 | 6 | 19 | 204 | 1 | 185 | 6.28e-59 | 184 |
| MS.gene42096.t1 | MTR_1g014150 | 46.237 | 186 | 91 | 5 | 21 | 204 | 11 | 189 | 7.38e-47 | 153 |
| MS.gene42096.t1 | MTR_1g014160 | 39.474 | 190 | 89 | 7 | 33 | 204 | 59 | 240 | 1.14e-28 | 108 |
| MS.gene42096.t1 | MTR_5g074550 | 33.889 | 180 | 105 | 5 | 33 | 203 | 17 | 191 | 2.87e-25 | 98.2 |
| MS.gene42096.t1 | MTR_2g103840 | 31.250 | 176 | 113 | 5 | 38 | 209 | 33 | 204 | 1.15e-22 | 92.0 |
| MS.gene42096.t1 | MTR_4g010180 | 28.495 | 186 | 127 | 5 | 27 | 209 | 11 | 193 | 3.17e-22 | 90.9 |
| MS.gene42096.t1 | MTR_5g074560 | 31.214 | 173 | 109 | 5 | 33 | 203 | 20 | 184 | 1.47e-19 | 83.2 |
| MS.gene42096.t1 | MTR_2g103850 | 27.684 | 177 | 120 | 5 | 38 | 210 | 34 | 206 | 1.95e-17 | 78.2 |
| MS.gene42096.t1 | MTR_0650s0010 | 28.125 | 192 | 127 | 5 | 28 | 209 | 12 | 202 | 1.96e-17 | 77.8 |
| MS.gene42096.t1 | MTR_8g099000 | 27.513 | 189 | 117 | 7 | 36 | 206 | 45 | 231 | 2.04e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42096.t1 | AT5G01750 | 56.132 | 212 | 91 | 1 | 2 | 213 | 8 | 217 | 2.27e-94 | 275 |
| MS.gene42096.t1 | AT3G11740 | 60.847 | 189 | 73 | 1 | 23 | 210 | 3 | 191 | 1.67e-86 | 254 |
| MS.gene42096.t1 | AT2G14560 | 50.244 | 205 | 100 | 1 | 20 | 224 | 4 | 206 | 9.46e-74 | 223 |
| MS.gene42096.t1 | AT1G33840 | 50.711 | 211 | 100 | 2 | 1 | 207 | 1 | 211 | 3.56e-73 | 222 |
| MS.gene42096.t1 | AT2G14560 | 50.244 | 205 | 100 | 1 | 20 | 224 | 64 | 266 | 1.45e-72 | 222 |
| MS.gene42096.t1 | AT5G01750 | 53.293 | 167 | 76 | 1 | 2 | 168 | 8 | 172 | 5.59e-68 | 207 |
| MS.gene42096.t1 | AT2G14560 | 50.667 | 150 | 74 | 0 | 20 | 169 | 4 | 153 | 1.71e-56 | 177 |
| MS.gene42096.t1 | AT2G14560 | 50.667 | 150 | 74 | 0 | 20 | 169 | 64 | 213 | 3.47e-55 | 176 |
| MS.gene42096.t1 | AT1G33840 | 46.821 | 173 | 88 | 2 | 1 | 169 | 1 | 173 | 4.57e-54 | 172 |
| MS.gene42096.t1 | AT3G16900 | 41.146 | 192 | 90 | 5 | 17 | 207 | 11 | 180 | 2.59e-47 | 154 |
| MS.gene42096.t1 | AT3G56180 | 35.829 | 187 | 115 | 2 | 22 | 205 | 17 | 201 | 1.50e-36 | 127 |
| MS.gene42096.t1 | AT3G56180 | 35.294 | 187 | 114 | 3 | 22 | 205 | 17 | 199 | 2.96e-34 | 122 |
| MS.gene42096.t1 | AT3G10986 | 31.579 | 190 | 124 | 3 | 22 | 205 | 3 | 192 | 1.19e-28 | 107 |
| MS.gene42096.t1 | AT3G15810 | 28.249 | 177 | 121 | 3 | 36 | 210 | 33 | 205 | 1.01e-23 | 95.1 |
| MS.gene42096.t1 | AT1G80120 | 30.556 | 180 | 116 | 4 | 36 | 210 | 19 | 194 | 7.78e-18 | 79.0 |
| MS.gene42096.t1 | AT2G30270 | 28.333 | 180 | 115 | 6 | 26 | 203 | 12 | 179 | 9.30e-18 | 78.2 |
| MS.gene42096.t1 | AT2G05910 | 26.178 | 191 | 122 | 6 | 28 | 210 | 9 | 188 | 5.28e-16 | 73.9 |
| MS.gene42096.t1 | AT2G38640 | 29.310 | 174 | 114 | 5 | 36 | 206 | 25 | 192 | 8.64e-15 | 70.5 |
| MS.gene42096.t1 | AT5G20640 | 25.248 | 202 | 134 | 5 | 23 | 209 | 12 | 211 | 1.05e-14 | 70.9 |
Find 54 sgRNAs with CRISPR-Local
Find 147 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATATTGTCTTCAAAGTTAA+AGG | 0.162900 | 7.3:-32510447 | MS.gene42096:CDS |
| TTTGGTCTTCAATTGCATTA+TGG | 0.249654 | 7.3:+32508552 | None:intergenic |
| GAAGTCACAAACATCTTCTT+TGG | 0.264338 | 7.3:+32508504 | None:intergenic |
| AGCAAGAAACACGTCTAATT+TGG | 0.276680 | 7.3:+32508534 | None:intergenic |
| GTGCTTCCGACCACCATATT+TGG | 0.296063 | 7.3:-32510567 | MS.gene42096:CDS |
| TGCTCCATATCCATTGGATT+TGG | 0.348058 | 7.3:-32510532 | MS.gene42096:CDS |
| ACAATATTGAGGGCCAAATA+TGG | 0.348290 | 7.3:+32510554 | None:intergenic |
| ACAGCCAAATCCAATGGATA+TGG | 0.371690 | 7.3:+32510528 | None:intergenic |
| GAAGAAAAGGGAAGTGAATC+AGG | 0.376536 | 7.3:-32507924 | MS.gene42096:CDS |
| GATTGGTAAAGACCATTTCA+TGG | 0.376637 | 7.3:-32508018 | MS.gene42096:CDS |
| GGATTTGGCTGTGGTCAAAA+AGG | 0.380756 | 7.3:-32510517 | MS.gene42096:CDS |
| TGAGATTAACAGTGAAGAAA+AGG | 0.382281 | 7.3:-32507937 | MS.gene42096:CDS |
| CTTTCGTGACCGCCGTGTCT+TGG | 0.400002 | 7.3:-32510412 | MS.gene42096:CDS |
| AACAATGTTGTTTGATTCAC+CGG | 0.422881 | 7.3:+32508438 | None:intergenic |
| GAGATTAACAGTGAAGAAAA+GGG | 0.427156 | 7.3:-32507936 | MS.gene42096:CDS |
| GTTTGATTCACCGGCATAAA+CGG | 0.431148 | 7.3:+32508447 | None:intergenic |
| TTGCGACGTAGGGTGGTGAT+AGG | 0.450531 | 7.3:+32510372 | None:intergenic |
| ACTTCAAAGTCAAAGGTAGT+TGG | 0.472279 | 7.3:-32508486 | MS.gene42096:CDS |
| ATATCCATTGGATTTGGCTG+TGG | 0.476662 | 7.3:-32510526 | MS.gene42096:CDS |
| TGATCGGTGGGAAGCTTACA+TGG | 0.483103 | 7.3:-32508623 | MS.gene42096:CDS |
| ATGAAAGCGTAATCAACATT+GGG | 0.498374 | 7.3:+32507984 | None:intergenic |
| ATATTGTGCTCCATATCCAT+TGG | 0.499976 | 7.3:-32510538 | MS.gene42096:CDS |
| TGCCTCTGCACCACCGATGT+CGG | 0.506015 | 7.3:-32510589 | MS.gene42096:CDS |
| GCAGATGGTTGTGGTTGATA+AGG | 0.518139 | 7.3:+32510609 | None:intergenic |
| TATGAAAGCGTAATCAACAT+TGG | 0.519673 | 7.3:+32507983 | None:intergenic |
| CGATCTTGCACCGTTTATGC+CGG | 0.523467 | 7.3:-32508457 | MS.gene42096:CDS |
| ATCAAACAACATTGTTGCAC+AGG | 0.532488 | 7.3:-32508431 | MS.gene42096:intron |
| TGTTGATTACGCTTTCATAG+TGG | 0.534696 | 7.3:-32507979 | MS.gene42096:CDS |
| GATAAACTGTGACCATGAAA+TGG | 0.538015 | 7.3:+32508006 | None:intergenic |
| GGATATGGAGCACAATATTG+AGG | 0.540481 | 7.3:+32510543 | None:intergenic |
| GTTTGTGACTTCAAAGTCAA+AGG | 0.540662 | 7.3:-32508493 | MS.gene42096:CDS |
| CACCGACATCGGTGGTGCAG+AGG | 0.548461 | 7.3:+32510587 | None:intergenic |
| GGTGCAGAGGCAGATGGTTG+TGG | 0.549880 | 7.3:+32510600 | None:intergenic |
| TTGAAGGTACCTTGCGACGT+AGG | 0.551744 | 7.3:+32510361 | None:intergenic |
| TGAAGGTACCTTGCGACGTA+GGG | 0.554387 | 7.3:+32510362 | None:intergenic |
| GATATGGAGCACAATATTGA+GGG | 0.554691 | 7.3:+32510544 | None:intergenic |
| TTGACCACAGCCAAATCCAA+TGG | 0.558143 | 7.3:+32510522 | None:intergenic |
| CAAGACACGGCGGTCACGAA+AGG | 0.581276 | 7.3:+32510413 | None:intergenic |
| AATGACTATGCATGATCGGT+GGG | 0.582075 | 7.3:-32508635 | MS.gene42096:CDS |
| TAATGACTATGCATGATCGG+TGG | 0.599736 | 7.3:-32508636 | MS.gene42096:CDS |
| TGCGACGTAGGGTGGTGATA+GGG | 0.606682 | 7.3:+32510373 | None:intergenic |
| ATCGGTGGTGCAGAGGCAGA+TGG | 0.609454 | 7.3:+32510594 | None:intergenic |
| GTCGGAAGCACCGACATCGG+TGG | 0.614411 | 7.3:+32510579 | None:intergenic |
| TGAGGGCCAAATATGGTGGT+CGG | 0.625346 | 7.3:+32510561 | None:intergenic |
| AGGTACCTTGCGACGTAGGG+TGG | 0.633675 | 7.3:+32510365 | None:intergenic |
| TATCACCACCCTACGTCGCA+AGG | 0.636481 | 7.3:-32510370 | MS.gene42096:intron |
| AGATAATGACTATGCATGAT+CGG | 0.641095 | 7.3:-32508639 | MS.gene42096:CDS |
| AAGGTGATAGCAATTTCAGA+CGG | 0.662704 | 7.3:-32510498 | MS.gene42096:CDS |
| ATATTGAGGGCCAAATATGG+TGG | 0.664652 | 7.3:+32510557 | None:intergenic |
| GTGGTCGGAAGCACCGACAT+CGG | 0.667721 | 7.3:+32510576 | None:intergenic |
| CTGCGGCATCAACCAAGACA+CGG | 0.671998 | 7.3:+32510400 | None:intergenic |
| GATCGGTGGGAAGCTTACAT+GGG | 0.678160 | 7.3:-32508622 | MS.gene42096:CDS |
| GGTGGTGATAGGGTTATCTG+CGG | 0.701861 | 7.3:+32510383 | None:intergenic |
| CGGCATCAACCAAGACACGG+CGG | 0.795295 | 7.3:+32510403 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTCTTATAATTTCAAAATA+GGG | + | chr7.3:32509310-32509329 | None:intergenic | 10.0% |
| !!! | AAAAATATTTTTAGTTTGTT+TGG | + | chr7.3:32509472-32509491 | None:intergenic | 10.0% |
| !!! | ATAATTCTTTTGTTTTTTTT+AGG | + | chr7.3:32508554-32508573 | None:intergenic | 10.0% |
| !!! | TAATTCTTTTGTTTTTTTTA+GGG | + | chr7.3:32508553-32508572 | None:intergenic | 10.0% |
| !!! | TGTATTTTTAAAATTTACAA+AGG | - | chr7.3:32509186-32509205 | MS.gene42096:intron | 10.0% |
| !!! | TTGTAAATTTTAAAAATACA+GGG | + | chr7.3:32509186-32509205 | None:intergenic | 10.0% |
| !!! | TTTGTAAATTTTAAAAATAC+AGG | + | chr7.3:32509187-32509206 | None:intergenic | 10.0% |
| !! | CATTCTTATAATTTCAAAAT+AGG | + | chr7.3:32509311-32509330 | None:intergenic | 15.0% |
| !!! | AAACCTAGATTATAAAATTT+TGG | - | chr7.3:32509276-32509295 | MS.gene42096:intron | 15.0% |
| !!! | AATTAACAAATCAACTTTTA+TGG | - | chr7.3:32510418-32510437 | MS.gene42096:CDS | 15.0% |
| !!! | TGAAACTTTTTTTTTTTTTG+AGG | - | chr7.3:32510255-32510274 | MS.gene42096:intron | 15.0% |
| !!! | TTGAATGTTAGTATAAATTT+TGG | - | chr7.3:32509152-32509171 | MS.gene42096:intron | 15.0% |
| !!! | TTGACTATTACTTTTTTTTT+TGG | + | chr7.3:32508287-32508306 | None:intergenic | 15.0% |
| !!! | TTTCCAAAATTTTATAATCT+AGG | + | chr7.3:32509282-32509301 | None:intergenic | 15.0% |
| !!! | TTTTAAAAGAAATTCCAAAT+TGG | - | chr7.3:32509223-32509242 | MS.gene42096:intron | 15.0% |
| !!! | TTTTATTTTCTATAGATGTT+TGG | + | chr7.3:32508665-32508684 | None:intergenic | 15.0% |
| !! | AAAATATATAAGGACCAATT+TGG | + | chr7.3:32509240-32509259 | None:intergenic | 20.0% |
| !! | AATATTGTCTTCAAAGTTAA+AGG | - | chr7.3:32508061-32508080 | MS.gene42096:intron | 20.0% |
| !! | CAAATGAAAAAGATTTGAAA+AGG | - | chr7.3:32509383-32509402 | MS.gene42096:intron | 20.0% |
| !! | TCCAGTGATAATTAAATTAA+GGG | + | chr7.3:32510387-32510406 | None:intergenic | 20.0% |
| !! | TTGCATATCAATTAAAACTA+AGG | + | chr7.3:32508718-32508737 | None:intergenic | 20.0% |
| !! | TTTGTCAAATAAATGTCATA+TGG | + | chr7.3:32509701-32509720 | None:intergenic | 20.0% |
| !!! | ACAAAGAAGAAATTTTATCT+TGG | - | chr7.3:32510212-32510231 | MS.gene42096:intron | 20.0% |
| !!! | ACTTGTTAATGATTCAAAAA+AGG | + | chr7.3:32510339-32510358 | None:intergenic | 20.0% |
| !!! | ATTTTTAGTTTGTTTGGATA+GGG | + | chr7.3:32509466-32509485 | None:intergenic | 20.0% |
| !!! | CAAAGAAGAAATTTTATCTT+GGG | - | chr7.3:32510213-32510232 | MS.gene42096:intron | 20.0% |
| !!! | TATTTTTAGTTTGTTTGGAT+AGG | + | chr7.3:32509467-32509486 | None:intergenic | 20.0% |
| !!! | TTACTTTTTTTTTTGGAGAA+AGG | + | chr7.3:32508280-32508299 | None:intergenic | 20.0% |
| !!! | TTAGTATAAATTTTGGAGAT+GGG | - | chr7.3:32509159-32509178 | MS.gene42096:intron | 20.0% |
| !!! | TTTTCCATTGTTTGAATTAT+GGG | - | chr7.3:32509779-32509798 | MS.gene42096:intron | 20.0% |
| !!! | TTTTGATTATTCTGATAGAA+AGG | - | chr7.3:32508475-32508494 | MS.gene42096:CDS | 20.0% |
| !!! | TTTTTTTTTCTTTCTAATCG+TGG | + | chr7.3:32509100-32509119 | None:intergenic | 20.0% |
| ! | AAAACTAAATATTCGCTTGT+TGG | + | chr7.3:32510130-32510149 | None:intergenic | 25.0% |
| ! | ACCCTTAATTTAATTATCAC+TGG | - | chr7.3:32510383-32510402 | MS.gene42096:CDS | 25.0% |
| ! | ATCCAATAAAGTTGTACTAT+TGG | - | chr7.3:32509843-32509862 | MS.gene42096:intron | 25.0% |
| ! | CAAATACAGTTATAAAAGTG+AGG | - | chr7.3:32508782-32508801 | MS.gene42096:intron | 25.0% |
| ! | CATAATTCAAACAATGGAAA+AGG | + | chr7.3:32509780-32509799 | None:intergenic | 25.0% |
| ! | GAAAAAGATTTGAAAAGGAA+AGG | - | chr7.3:32509388-32509407 | MS.gene42096:intron | 25.0% |
| ! | GTCCAGTGATAATTAAATTA+AGG | + | chr7.3:32510388-32510407 | None:intergenic | 25.0% |
| ! | TATGATTGGACAAAAACAAT+GGG | + | chr7.3:32508995-32509014 | None:intergenic | 25.0% |
| ! | TCACCTAAGAATAAAACTAT+GGG | - | chr7.3:32509581-32509600 | MS.gene42096:intron | 25.0% |
| ! | TTATGATTGGACAAAAACAA+TGG | + | chr7.3:32508996-32509015 | None:intergenic | 25.0% |
| ! | TTCACCTAAGAATAAAACTA+TGG | - | chr7.3:32509580-32509599 | MS.gene42096:intron | 25.0% |
| !! | CTTTTCCATTGTTTGAATTA+TGG | - | chr7.3:32509778-32509797 | MS.gene42096:intron | 25.0% |
| !! | TTTTCGGACATTAAATATTG+AGG | + | chr7.3:32509075-32509094 | None:intergenic | 25.0% |
| !!! | ACTTCTTAAAAAGTGTCTTA+AGG | + | chr7.3:32510192-32510211 | None:intergenic | 25.0% |
| !!! | CTTCTTAAAAAGTGTCTTAA+GGG | + | chr7.3:32510191-32510210 | None:intergenic | 25.0% |
| !!! | GTTAGTATAAATTTTGGAGA+TGG | - | chr7.3:32509158-32509177 | MS.gene42096:intron | 25.0% |
| !!! | TTACTTGATGAAGTTTTGTT+CGG | - | chr7.3:32510608-32510627 | MS.gene42096:CDS | 25.0% |
| !!! | TTTTTTTTATGTTAACCGTC+CGG | - | chr7.3:32509488-32509507 | MS.gene42096:intron | 25.0% |
| AAAGCCCATAATTCAAACAA+TGG | + | chr7.3:32509786-32509805 | None:intergenic | 30.0% | |
| AATTCAAACAATGGAAAAGG+AGG | + | chr7.3:32509777-32509796 | None:intergenic | 30.0% | |
| ACAGTTATAAAAGTGAGGTT+GGG | - | chr7.3:32508787-32508806 | MS.gene42096:intron | 30.0% | |
| AGATAATGACTATGCATGAT+CGG | - | chr7.3:32509869-32509888 | MS.gene42096:intron | 30.0% | |
| ATGATTGGACAAAAACAATG+GGG | + | chr7.3:32508994-32509013 | None:intergenic | 30.0% | |
| CAACTAATATTAGACAACTG+TGG | + | chr7.3:32509039-32509058 | None:intergenic | 30.0% | |
| CAATCATAAGAGGAGAAAAA+CGG | - | chr7.3:32509007-32509026 | MS.gene42096:intron | 30.0% | |
| CACCAATAGTACAACTTTAT+TGG | + | chr7.3:32509848-32509867 | None:intergenic | 30.0% | |
| GAGATTAACAGTGAAGAAAA+GGG | - | chr7.3:32510572-32510591 | MS.gene42096:CDS | 30.0% | |
| TACAGTTATAAAAGTGAGGT+TGG | - | chr7.3:32508786-32508805 | MS.gene42096:intron | 30.0% | |
| TGAGATTAACAGTGAAGAAA+AGG | - | chr7.3:32510571-32510590 | MS.gene42096:CDS | 30.0% | |
| ! | AACAATGTTGTTTGATTCAC+CGG | + | chr7.3:32510073-32510092 | None:intergenic | 30.0% |
| ! | ATGAAAGCGTAATCAACATT+GGG | + | chr7.3:32510527-32510546 | None:intergenic | 30.0% |
| ! | TATGAAAGCGTAATCAACAT+TGG | + | chr7.3:32510528-32510547 | None:intergenic | 30.0% |
| ! | TATTCGCTTGTTGGTTATAT+AGG | + | chr7.3:32510121-32510140 | None:intergenic | 30.0% |
| ! | TTTGGTCTTCAATTGCATTA+TGG | + | chr7.3:32509959-32509978 | None:intergenic | 30.0% |
| !! | TGTTTTTGTCCAATCATAAG+AGG | - | chr7.3:32508997-32509016 | MS.gene42096:intron | 30.0% |
| !!! | AGACCCATAGTTTTATTCTT+AGG | + | chr7.3:32509587-32509606 | None:intergenic | 30.0% |
| !!! | TACTTGATGAAGTTTTGTTC+GGG | - | chr7.3:32510609-32510628 | MS.gene42096:CDS | 30.0% |
| AAATATTACCCCCTCTTAGT+CGG | + | chr7.3:32508871-32508890 | None:intergenic | 35.0% | |
| AAGGTGATAGCAATTTCAGA+CGG | - | chr7.3:32508010-32508029 | MS.gene42096:CDS | 35.0% | |
| ACAATATTGAGGGCCAAATA+TGG | + | chr7.3:32507957-32507976 | None:intergenic | 35.0% | |
| ACTTCAAAGTCAAAGGTAGT+TGG | - | chr7.3:32510022-32510041 | MS.gene42096:intron | 35.0% | |
| AGAAGAGAGAATAACGTTGA+AGG | + | chr7.3:32508166-32508185 | None:intergenic | 35.0% | |
| AGCAAGAAACACGTCTAATT+TGG | + | chr7.3:32509977-32509996 | None:intergenic | 35.0% | |
| ATATTGTGCTCCATATCCAT+TGG | - | chr7.3:32507970-32507989 | MS.gene42096:CDS | 35.0% | |
| ATCAAACAACATTGTTGCAC+AGG | - | chr7.3:32510077-32510096 | MS.gene42096:intron | 35.0% | |
| GAAGTCACAAACATCTTCTT+TGG | + | chr7.3:32510007-32510026 | None:intergenic | 35.0% | |
| GATAAACTGTGACCATGAAA+TGG | + | chr7.3:32510505-32510524 | None:intergenic | 35.0% | |
| GATATGGAGCACAATATTGA+GGG | + | chr7.3:32507967-32507986 | None:intergenic | 35.0% | |
| GATTGGTAAAGACCATTTCA+TGG | - | chr7.3:32510490-32510509 | MS.gene42096:CDS | 35.0% | |
| GTTTGTGACTTCAAAGTCAA+AGG | - | chr7.3:32510015-32510034 | MS.gene42096:intron | 35.0% | |
| GTTTGTTTGGATAGGGTAAT+GGG | + | chr7.3:32509459-32509478 | None:intergenic | 35.0% | |
| TTGATATGTCATAGTGTCGT+CGG | + | chr7.3:32508844-32508863 | None:intergenic | 35.0% | |
| ! | ACTGTTCAGAGTCTTTTGAT+TGG | - | chr7.3:32510473-32510492 | MS.gene42096:CDS | 35.0% |
| ! | AGTTTGTTTGGATAGGGTAA+TGG | + | chr7.3:32509460-32509479 | None:intergenic | 35.0% |
| ! | CGTTTTTCTCCTCTTATGAT+TGG | + | chr7.3:32509009-32509028 | None:intergenic | 35.0% |
| ! | CTTTCTAATCGTGGCATTTT+CGG | + | chr7.3:32509091-32509110 | None:intergenic | 35.0% |
| ! | TGTTGATTACGCTTTCATAG+TGG | - | chr7.3:32510529-32510548 | MS.gene42096:CDS | 35.0% |
| !!! | ACTTGATGAAGTTTTGTTCG+GGG | - | chr7.3:32510610-32510629 | MS.gene42096:CDS | 35.0% |
| AATGACTATGCATGATCGGT+GGG | - | chr7.3:32509873-32509892 | MS.gene42096:intron | 40.0% | |
| ACAGCCAAATCCAATGGATA+TGG | + | chr7.3:32507983-32508002 | None:intergenic | 40.0% | |
| ACATGTGAGTATGAGAGAGA+TGG | + | chr7.3:32508942-32508961 | None:intergenic | 40.0% | |
| AGCCCCATTCTCTTAAAAAC+CGG | + | chr7.3:32509510-32509529 | None:intergenic | 40.0% | |
| ATATCAAGGTTCCGACTAAG+AGG | - | chr7.3:32508857-32508876 | MS.gene42096:intron | 40.0% | |
| ATATCCATTGGATTTGGCTG+TGG | - | chr7.3:32507982-32508001 | MS.gene42096:CDS | 40.0% | |
| ATATTGAGGGCCAAATATGG+TGG | + | chr7.3:32507954-32507973 | None:intergenic | 40.0% | |
| CCATTCTCTTAAAAACCGGA+CGG | + | chr7.3:32509506-32509525 | None:intergenic | 40.0% | |
| GAAGAAAAGGGAAGTGAATC+AGG | - | chr7.3:32510584-32510603 | MS.gene42096:CDS | 40.0% | |
| GACGACACTATGACATATCA+AGG | - | chr7.3:32508843-32508862 | MS.gene42096:intron | 40.0% | |
| GGATATGGAGCACAATATTG+AGG | + | chr7.3:32507968-32507987 | None:intergenic | 40.0% | |
| GTTTGATTCACCGGCATAAA+CGG | + | chr7.3:32510064-32510083 | None:intergenic | 40.0% | |
| TAATGACTATGCATGATCGG+TGG | - | chr7.3:32509872-32509891 | MS.gene42096:intron | 40.0% | |
| TACCTAATGACGAATCGTTC+AGG | + | chr7.3:32509610-32509629 | None:intergenic | 40.0% | |
| TATAAAAGTGAGGTTGGGTG+AGG | - | chr7.3:32508792-32508811 | MS.gene42096:intron | 40.0% | |
| TATCAAGGTTCCGACTAAGA+GGG | - | chr7.3:32508858-32508877 | MS.gene42096:intron | 40.0% | |
| TCATGCTAACAAGTGCTCTT+AGG | + | chr7.3:32510364-32510383 | None:intergenic | 40.0% | |
| TGATATGTCATAGTGTCGTC+GGG | + | chr7.3:32508843-32508862 | None:intergenic | 40.0% | |
| TGCTCCATATCCATTGGATT+TGG | - | chr7.3:32507976-32507995 | MS.gene42096:CDS | 40.0% | |
| !! | CGTCCGGTTTTTAAGAGAAT+GGG | - | chr7.3:32509504-32509523 | MS.gene42096:intron | 40.0% |
| !! | GTCCGGTTTTTAAGAGAATG+GGG | - | chr7.3:32509505-32509524 | MS.gene42096:intron | 40.0% |
| !!! | CTTGATGAAGTTTTGTTCGG+GGG | - | chr7.3:32510611-32510630 | MS.gene42096:CDS | 40.0% |
| AGAATGGGGCTCTCATAGTT+TGG | - | chr7.3:32509519-32509538 | MS.gene42096:intron | 45.0% | |
| ATCAAGGTTCCGACTAAGAG+GGG | - | chr7.3:32508859-32508878 | MS.gene42096:intron | 45.0% | |
| CTCCTGAACGATTCGTCATT+AGG | - | chr7.3:32509605-32509624 | MS.gene42096:intron | 45.0% | |
| GGATTTGGCTGTGGTCAAAA+AGG | - | chr7.3:32507991-32508010 | MS.gene42096:CDS | 45.0% | |
| GGGAGAGAAAGAAGAAGAGA+GGG | + | chr7.3:32508974-32508993 | None:intergenic | 45.0% | |
| TGAGGATTGAGTGTAGCAGA+AGG | - | chr7.3:32508810-32508829 | MS.gene42096:intron | 45.0% | |
| TTGACCACAGCCAAATCCAA+TGG | + | chr7.3:32507989-32508008 | None:intergenic | 45.0% | |
| ! | GCAGATGGTTGTGGTTGATA+AGG | + | chr7.3:32507902-32507921 | None:intergenic | 45.0% |
| !! | CCGTCCGGTTTTTAAGAGAA+TGG | - | chr7.3:32509503-32509522 | MS.gene42096:intron | 45.0% |
| !! | TTTGAAAAAAAAAATATATA+AGG | + | chr7.3:32509250-32509269 | None:intergenic | 5.0% |
| !!! | AATTTCTTTTAAAAATTTAT+AGG | + | chr7.3:32509217-32509236 | None:intergenic | 5.0% |
| CGATCTTGCACCGTTTATGC+CGG | - | chr7.3:32510051-32510070 | MS.gene42096:intron | 50.0% | |
| GATCGGTGGGAAGCTTACAT+GGG | - | chr7.3:32509886-32509905 | MS.gene42096:intron | 50.0% | |
| GGGGAGAGAAAGAAGAAGAG+AGG | + | chr7.3:32508975-32508994 | None:intergenic | 50.0% | |
| GGTGGTGATAGGGTTATCTG+CGG | + | chr7.3:32508128-32508147 | None:intergenic | 50.0% | |
| GTGCTTCCGACCACCATATT+TGG | - | chr7.3:32507941-32507960 | MS.gene42096:CDS | 50.0% | |
| TCAAGGTTCCGACTAAGAGG+GGG | - | chr7.3:32508860-32508879 | MS.gene42096:intron | 50.0% | |
| TGAGGGCCAAATATGGTGGT+CGG | + | chr7.3:32507950-32507969 | None:intergenic | 50.0% | |
| TGATCGGTGGGAAGCTTACA+TGG | - | chr7.3:32509885-32509904 | MS.gene42096:intron | 50.0% | |
| !! | TGAAGGTACCTTGCGACGTA+GGG | + | chr7.3:32508149-32508168 | None:intergenic | 50.0% |
| !! | TTGAAGGTACCTTGCGACGT+AGG | + | chr7.3:32508150-32508169 | None:intergenic | 50.0% |
| CTGCGGCATCAACCAAGACA+CGG | + | chr7.3:32508111-32508130 | None:intergenic | 55.0% | |
| TATCACCACCCTACGTCGCA+AGG | - | chr7.3:32508138-32508157 | MS.gene42096:intron | 55.0% | |
| TGCGACGTAGGGTGGTGATA+GGG | + | chr7.3:32508138-32508157 | None:intergenic | 55.0% | |
| TTGCGACGTAGGGTGGTGAT+AGG | + | chr7.3:32508139-32508158 | None:intergenic | 55.0% | |
| AGGTACCTTGCGACGTAGGG+TGG | + | chr7.3:32508146-32508165 | None:intergenic | 60.0% | |
| ATCGGTGGTGCAGAGGCAGA+TGG | + | chr7.3:32507917-32507936 | None:intergenic | 60.0% | |
| CAAGACACGGCGGTCACGAA+AGG | + | chr7.3:32508098-32508117 | None:intergenic | 60.0% | |
| CGGCATCAACCAAGACACGG+CGG | + | chr7.3:32508108-32508127 | None:intergenic | 60.0% | |
| CTTTCGTGACCGCCGTGTCT+TGG | - | chr7.3:32508096-32508115 | MS.gene42096:intron | 60.0% | |
| GGTGCAGAGGCAGATGGTTG+TGG | + | chr7.3:32507911-32507930 | None:intergenic | 60.0% | |
| TGCCTCTGCACCACCGATGT+CGG | - | chr7.3:32507919-32507938 | MS.gene42096:CDS | 60.0% | |
| !! | GTGGTCGGAAGCACCGACAT+CGG | + | chr7.3:32507935-32507954 | None:intergenic | 60.0% |
| CACCGACATCGGTGGTGCAG+AGG | + | chr7.3:32507924-32507943 | None:intergenic | 65.0% | |
| !! | GTCGGAAGCACCGACATCGG+TGG | + | chr7.3:32507932-32507951 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 32507890 | 32510640 | 32507890 | ID=MS.gene42096 |
| chr7.3 | mRNA | 32507890 | 32510640 | 32507890 | ID=MS.gene42096.t1;Parent=MS.gene42096 |
| chr7.3 | exon | 32510371 | 32510640 | 32510371 | ID=MS.gene42096.t1.exon1;Parent=MS.gene42096.t1 |
| chr7.3 | CDS | 32510371 | 32510640 | 32510371 | ID=cds.MS.gene42096.t1;Parent=MS.gene42096.t1 |
| chr7.3 | exon | 32508432 | 32508659 | 32508432 | ID=MS.gene42096.t1.exon2;Parent=MS.gene42096.t1 |
| chr7.3 | CDS | 32508432 | 32508659 | 32508432 | ID=cds.MS.gene42096.t1;Parent=MS.gene42096.t1 |
| chr7.3 | exon | 32507890 | 32508072 | 32507890 | ID=MS.gene42096.t1.exon3;Parent=MS.gene42096.t1 |
| chr7.3 | CDS | 32507890 | 32508072 | 32507890 | ID=cds.MS.gene42096.t1;Parent=MS.gene42096.t1 |
| Gene Sequence |
| Protein sequence |
