Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87041.t1 | XP_003623537.1 | 97.2 | 215 | 6 | 0 | 1 | 215 | 1 | 215 | 3.30E-114 | 421 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87041.t1 | Q9LZX1 | 60.5 | 210 | 81 | 1 | 2 | 211 | 8 | 215 | 1.1e-73 | 277.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87041.t1 | G7KW19 | 97.2 | 215 | 6 | 0 | 1 | 215 | 1 | 215 | 2.4e-114 | 421.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene009719 | MS.gene87041 | PPI |
| MS.gene42103 | MS.gene87041 | PPI |
| MS.gene87041 | MS.gene87769 | PPI |
| MS.gene87041 | MS.gene87038 | PPI |
| MS.gene87041 | MS.gene009718 | PPI |
| MS.gene42098 | MS.gene87041 | PPI |
| MS.gene87043 | MS.gene87041 | PPI |
| MS.gene87041 | MS.gene42100 | PPI |
| MS.gene87041 | MS.gene42097 | PPI |
| MS.gene87041 | MS.gene87762 | PPI |
| MS.gene051028 | MS.gene87041 | PPI |
| MS.gene87767 | MS.gene87041 | PPI |
| MS.gene87039 | MS.gene87041 | PPI |
| MS.gene87041 | MS.gene87765 | PPI |
| MS.gene42848 | MS.gene87041 | PPI |
| MS.gene87041 | MS.gene42096 | PPI |
| MS.gene87765 | MS.gene87041 | PPI |
| MS.gene99705 | MS.gene87041 | PPI |
| MS.gene87041 | MS.gene99704 | PPI |
| MS.gene87041 | MS.gene87039 | PPI |
| MS.gene91237 | MS.gene87041 | PPI |
| MS.gene87041 | MS.gene87768 | PPI |
| MS.gene87041 | MS.gene42848 | PPI |
| MS.gene87041 | MS.gene42099 | PPI |
| MS.gene87041 | MS.gene91238 | PPI |
| MS.gene87769 | MS.gene87041 | PPI |
| MS.gene87041 | MS.gene87040 | PPI |
| MS.gene87041 | MS.gene25045 | PPI |
| MS.gene87041 | MS.gene87046 | PPI |
| MS.gene87041 | MS.gene81036 | PPI |
| MS.gene26305 | MS.gene87041 | PPI |
| MS.gene87041 | MS.gene42091 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87041.t1 | MTR_7g072140 | 97.209 | 215 | 6 | 0 | 1 | 215 | 1 | 215 | 6.02e-158 | 435 |
| MS.gene87041.t1 | MTR_7g072170 | 86.256 | 211 | 29 | 0 | 1 | 211 | 1 | 211 | 1.92e-136 | 381 |
| MS.gene87041.t1 | MTR_7g072120 | 85.915 | 213 | 28 | 2 | 1 | 212 | 1 | 212 | 4.17e-132 | 370 |
| MS.gene87041.t1 | MTR_7g072270 | 82.075 | 212 | 36 | 2 | 1 | 212 | 1 | 210 | 2.07e-127 | 358 |
| MS.gene87041.t1 | MTR_7g072250 | 71.041 | 221 | 49 | 3 | 1 | 211 | 25 | 240 | 2.12e-104 | 301 |
| MS.gene87041.t1 | MTR_7g072270 | 82.036 | 167 | 28 | 2 | 1 | 167 | 1 | 165 | 1.08e-98 | 284 |
| MS.gene87041.t1 | MTR_4g029430 | 61.458 | 192 | 68 | 3 | 19 | 209 | 11 | 197 | 1.21e-81 | 242 |
| MS.gene87041.t1 | MTR_7g071710 | 80.342 | 117 | 23 | 0 | 94 | 210 | 1 | 117 | 6.20e-69 | 207 |
| MS.gene87041.t1 | MTR_1g014180 | 54.255 | 188 | 75 | 6 | 22 | 204 | 4 | 185 | 3.52e-60 | 187 |
| MS.gene87041.t1 | MTR_1g014150 | 46.774 | 186 | 90 | 5 | 21 | 204 | 11 | 189 | 3.50e-47 | 154 |
| MS.gene87041.t1 | MTR_1g014160 | 40.526 | 190 | 87 | 7 | 33 | 204 | 59 | 240 | 6.21e-30 | 111 |
| MS.gene87041.t1 | MTR_5g074550 | 35.000 | 180 | 103 | 5 | 33 | 203 | 17 | 191 | 4.21e-26 | 100 |
| MS.gene87041.t1 | MTR_2g103840 | 33.898 | 177 | 109 | 5 | 37 | 209 | 32 | 204 | 5.67e-26 | 100 |
| MS.gene87041.t1 | MTR_4g010180 | 30.481 | 187 | 124 | 5 | 27 | 210 | 11 | 194 | 6.32e-26 | 100 |
| MS.gene87041.t1 | MTR_2g103850 | 29.944 | 177 | 116 | 5 | 38 | 210 | 34 | 206 | 8.53e-21 | 87.0 |
| MS.gene87041.t1 | MTR_5g074560 | 30.636 | 173 | 110 | 5 | 33 | 203 | 20 | 184 | 4.03e-20 | 84.3 |
| MS.gene87041.t1 | MTR_0650s0010 | 27.835 | 194 | 129 | 5 | 23 | 206 | 7 | 199 | 4.07e-17 | 76.6 |
| MS.gene87041.t1 | MTR_8g099000 | 28.042 | 189 | 116 | 7 | 36 | 206 | 45 | 231 | 2.29e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87041.t1 | AT5G01750 | 60.476 | 210 | 81 | 1 | 2 | 211 | 8 | 215 | 3.04e-100 | 290 |
| MS.gene87041.t1 | AT3G11740 | 65.104 | 192 | 66 | 1 | 22 | 212 | 2 | 193 | 5.75e-94 | 273 |
| MS.gene87041.t1 | AT2G14560 | 54.211 | 190 | 87 | 0 | 19 | 208 | 3 | 192 | 8.15e-77 | 230 |
| MS.gene87041.t1 | AT1G33840 | 50.718 | 209 | 94 | 1 | 8 | 207 | 3 | 211 | 4.82e-76 | 229 |
| MS.gene87041.t1 | AT2G14560 | 52.764 | 199 | 93 | 1 | 10 | 208 | 55 | 252 | 9.39e-76 | 229 |
| MS.gene87041.t1 | AT5G01750 | 56.287 | 167 | 71 | 1 | 2 | 168 | 8 | 172 | 5.56e-72 | 216 |
| MS.gene87041.t1 | AT2G14560 | 53.642 | 151 | 70 | 0 | 19 | 169 | 3 | 153 | 1.81e-61 | 190 |
| MS.gene87041.t1 | AT2G14560 | 51.875 | 160 | 76 | 1 | 10 | 169 | 55 | 213 | 2.29e-60 | 189 |
| MS.gene87041.t1 | AT1G33840 | 46.821 | 173 | 83 | 1 | 8 | 171 | 3 | 175 | 4.91e-57 | 179 |
| MS.gene87041.t1 | AT3G16900 | 40.000 | 200 | 94 | 5 | 9 | 207 | 6 | 180 | 1.72e-47 | 154 |
| MS.gene87041.t1 | AT3G56180 | 37.968 | 187 | 111 | 2 | 22 | 205 | 17 | 201 | 8.09e-43 | 143 |
| MS.gene87041.t1 | AT3G56180 | 37.433 | 187 | 110 | 3 | 22 | 205 | 17 | 199 | 2.06e-40 | 137 |
| MS.gene87041.t1 | AT3G10986 | 32.632 | 190 | 122 | 2 | 22 | 205 | 3 | 192 | 4.21e-34 | 120 |
| MS.gene87041.t1 | AT3G15810 | 32.022 | 178 | 113 | 3 | 36 | 210 | 33 | 205 | 1.94e-26 | 101 |
| MS.gene87041.t1 | AT1G80120 | 34.078 | 179 | 111 | 3 | 36 | 210 | 19 | 194 | 1.36e-20 | 86.3 |
| MS.gene87041.t1 | AT2G30270 | 32.948 | 173 | 102 | 6 | 33 | 203 | 19 | 179 | 2.87e-20 | 84.7 |
| MS.gene87041.t1 | AT2G38640 | 30.102 | 196 | 127 | 6 | 18 | 208 | 4 | 194 | 3.27e-19 | 82.0 |
| MS.gene87041.t1 | AT2G05910 | 25.389 | 193 | 125 | 6 | 22 | 206 | 3 | 184 | 8.22e-15 | 70.5 |
| MS.gene87041.t1 | AT5G20640 | 23.762 | 202 | 137 | 5 | 23 | 209 | 12 | 211 | 8.27e-13 | 65.5 |
| MS.gene87041.t1 | AT5G41590 | 27.322 | 183 | 119 | 5 | 36 | 206 | 39 | 219 | 3.21e-11 | 60.8 |
Find 54 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTGTGACTTTAAAGTTAA+AGG | 0.179324 | 7.4:-32397507 | MS.gene87041:CDS |
| GTACACCCCACTGCCATATT+TGG | 0.210732 | 7.4:-32398512 | MS.gene87041:CDS |
| AGCTAGAAATACATCTAATT+TGG | 0.215938 | 7.4:+32397548 | None:intergenic |
| CGATCGGTGGGAAGCTTATA+GGG | 0.250481 | 7.4:-32397637 | MS.gene87041:CDS |
| ACGATCGGTGGGAAGCTTAT+AGG | 0.303006 | 7.4:-32397638 | MS.gene87041:CDS |
| ACAATATTGCTGTCCAAATA+TGG | 0.305124 | 7.4:+32398499 | None:intergenic |
| TGCTCCATACCCGGTGGATT+TGG | 0.310766 | 7.4:-32398477 | MS.gene87041:CDS |
| ACAAGGATGTTGTTTATTAG+AGG | 0.333798 | 7.4:-32397172 | None:intergenic |
| AATTGGTAAAGATAATTTCA+TGG | 0.370019 | 7.4:-32397270 | MS.gene87041:CDS |
| ACTTTAAAGTTAAAGGTAGT+TGG | 0.394941 | 7.4:-32397500 | MS.gene87041:CDS |
| CCTCCGTGACCGCCGTGTCT+TGG | 0.425443 | 7.4:-32398357 | MS.gene87041:CDS |
| ACCGCCAAATCCACCGGGTA+TGG | 0.448876 | 7.4:+32398473 | None:intergenic |
| GCATATGGCTGTGGTTGATA+AGG | 0.449044 | 7.4:+32398554 | None:intergenic |
| ATCTAACAACATTGTTGCTC+AGG | 0.450402 | 7.4:-32397445 | MS.gene87041:intron |
| GGATTTGGCGGTCGTGAAGA+AGG | 0.451475 | 7.4:-32398462 | MS.gene87041:CDS |
| AGCGAAGTTTCCATCTGAAA+TGG | 0.466269 | 7.4:+32398433 | None:intergenic |
| ATAAAAGCATAGTCAACATT+GGG | 0.487398 | 7.4:+32397236 | None:intergenic |
| CGTGTCTTGGTTGATGCCGC+TGG | 0.487594 | 7.4:-32398344 | MS.gene87041:CDS |
| ATCGGCTGTGCAGAGGCATA+TGG | 0.490770 | 7.4:+32398539 | None:intergenic |
| CGATCTTGCATTGTTTATGC+TGG | 0.492276 | 7.4:-32397471 | MS.gene87041:CDS |
| AAACAACATCCTTGTCATCT+CGG | 0.500562 | 7.4:+32397180 | None:intergenic |
| TTCACGACCGCCAAATCCAC+CGG | 0.502250 | 7.4:+32398467 | None:intergenic |
| CTTGCGACGCAAGGTTGCGA+TGG | 0.504262 | 7.4:+32398316 | None:intergenic |
| GCAGTGGGGTGTACCGGCAT+CGG | 0.506668 | 7.4:+32398521 | None:intergenic |
| TCCATACCCGGTGGATTTGG+CGG | 0.515684 | 7.4:-32398474 | MS.gene87041:CDS |
| TATAAAAGCATAGTCAACAT+TGG | 0.518797 | 7.4:+32397235 | None:intergenic |
| TGCCTCTGCACAGCCGATGC+CGG | 0.520464 | 7.4:-32398534 | MS.gene87041:CDS |
| TTGCGACGCAAGGTTGCGAT+GGG | 0.521495 | 7.4:+32398317 | None:intergenic |
| AATATGGCAGTGGGGTGTAC+CGG | 0.521564 | 7.4:+32398515 | None:intergenic |
| CAACCAAGACACGGCGGTCA+CGG | 0.526860 | 7.4:+32398354 | None:intergenic |
| TTCGCTGTTACTGATGTCAA+TGG | 0.543600 | 7.4:-32398416 | MS.gene87041:CDS |
| TACCGGCATCGGCTGTGCAG+AGG | 0.544171 | 7.4:+32398532 | None:intergenic |
| TTGCTGTCCAAATATGGCAG+TGG | 0.548442 | 7.4:+32398505 | None:intergenic |
| TGAAGATACCTTGCGACGCA+AGG | 0.550906 | 7.4:+32398307 | None:intergenic |
| GCAATATTGTGCTCCATACC+CGG | 0.555147 | 7.4:-32398486 | MS.gene87041:CDS |
| CATCGCAACCTTGCGTCGCA+AGG | 0.559830 | 7.4:-32398315 | MS.gene87041:intron |
| CGAGATTAACCGAGATGACA+AGG | 0.564360 | 7.4:-32397189 | MS.gene87041:CDS |
| AAGGTTATGACCATTTCAGA+TGG | 0.565907 | 7.4:-32398443 | MS.gene87041:CDS |
| TGCTGTCCAAATATGGCAGT+GGG | 0.574892 | 7.4:+32398506 | None:intergenic |
| TAATGACTATGCACGATCGG+TGG | 0.583902 | 7.4:-32397650 | MS.gene87041:CDS |
| AATGACTATGCACGATCGGT+GGG | 0.596769 | 7.4:-32397649 | MS.gene87041:CDS |
| CCAAGACACGGCGGTCACGG+AGG | 0.598529 | 7.4:+32398357 | None:intergenic |
| CAAGACACGGCGGTCACGGA+GGG | 0.598937 | 7.4:+32398358 | None:intergenic |
| AACATCGTGTTCAAAGTGAA+AGG | 0.602205 | 7.4:-32398392 | MS.gene87041:CDS |
| GATCGGTGGGAAGCTTATAG+GGG | 0.604354 | 7.4:-32397636 | MS.gene87041:CDS |
| TGTGCAGAGGCATATGGCTG+TGG | 0.614650 | 7.4:+32398545 | None:intergenic |
| TCACGACCGCCAAATCCACC+GGG | 0.620180 | 7.4:+32398468 | None:intergenic |
| AGATAATGACTATGCACGAT+CGG | 0.620846 | 7.4:-32397653 | MS.gene87041:CDS |
| CAGCGGCATCAACCAAGACA+CGG | 0.649793 | 7.4:+32398345 | None:intergenic |
| GGTTGCGATGGGGTAACCAG+CGG | 0.677174 | 7.4:+32398328 | None:intergenic |
| ATATTGTGCTCCATACCCGG+TGG | 0.724339 | 7.4:-32398483 | MS.gene87041:CDS |
| TGCGACGCAAGGTTGCGATG+GGG | 0.730177 | 7.4:+32398318 | None:intergenic |
| GCTGTCCAAATATGGCAGTG+GGG | 0.779761 | 7.4:+32398507 | None:intergenic |
| CGGCATCAACCAAGACACGG+CGG | 0.788571 | 7.4:+32398348 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGATTTCAATTATGTTTT+TGG | - | chr7.4:32398059-32398078 | MS.gene87041:intron | 15.0% |
| !!! | TTCATCACTTTTAAAAATAA+TGG | - | chr7.4:32397623-32397642 | MS.gene87041:CDS | 15.0% |
| !! | AAACAATAAAAATGACCAAA+GGG | + | chr7.4:32397583-32397602 | None:intergenic | 20.0% |
| !! | AATTGGTAAAGATAATTTCA+TGG | - | chr7.4:32398468-32398487 | MS.gene87041:CDS | 20.0% |
| !! | AGATTTAAAAAACACTATAC+AGG | + | chr7.4:32398008-32398027 | None:intergenic | 20.0% |
| !! | TAAACAATAAAAATGACCAA+AGG | + | chr7.4:32397584-32397603 | None:intergenic | 20.0% |
| !! | TACCAGTAAAAATGAATTTA+CGG | - | chr7.4:32397499-32397518 | MS.gene87041:CDS | 20.0% |
| !!! | ACACACATTAAAATTTTGTT+TGG | + | chr7.4:32397828-32397847 | None:intergenic | 20.0% |
| !!! | ACTAATCACAAATCAATTTT+TGG | - | chr7.4:32398396-32398415 | MS.gene87041:CDS | 20.0% |
| !!! | ATTTGGTTTTAAATTGGATT+AGG | + | chr7.4:32398176-32398195 | None:intergenic | 20.0% |
| !!! | CATCTAATTTGGTTTTAAAT+TGG | + | chr7.4:32398182-32398201 | None:intergenic | 20.0% |
| !!! | GGGGTATTTTTTTTTTTAAT+CGG | + | chr7.4:32397979-32397998 | None:intergenic | 20.0% |
| !!! | GGTCATTTTTATTGTTTAAA+TGG | - | chr7.4:32397586-32397605 | MS.gene87041:CDS | 20.0% |
| !!! | TATTTTTTTTTTTAATCGGC+AGG | + | chr7.4:32397975-32397994 | None:intergenic | 20.0% |
| !!! | TTTGGTTTTAAATTGGATTA+GGG | + | chr7.4:32398175-32398194 | None:intergenic | 20.0% |
| ! | AACAATAAAAATGACCAAAG+GGG | + | chr7.4:32397582-32397601 | None:intergenic | 25.0% |
| ! | AGCTAGAAATACATCTAATT+TGG | + | chr7.4:32398193-32398212 | None:intergenic | 25.0% |
| !! | ATAAAAGCATAGTCAACATT+GGG | + | chr7.4:32398505-32398524 | None:intergenic | 25.0% |
| !! | CACGTCTAACATAATATTTT+TGG | + | chr7.4:32397900-32397919 | None:intergenic | 25.0% |
| !! | TATAAAAGCATAGTCAACAT+TGG | + | chr7.4:32398506-32398525 | None:intergenic | 25.0% |
| !!! | ACAGTTCAGAGTATTTTAAT+TGG | - | chr7.4:32398451-32398470 | MS.gene87041:CDS | 25.0% |
| !!! | ACTTTAAAGTTAAAGGTAGT+TGG | - | chr7.4:32398238-32398257 | MS.gene87041:intron | 25.0% |
| !!! | CACACGTTAATTTTTTTTGA+AGG | + | chr7.4:32397852-32397871 | None:intergenic | 25.0% |
| !!! | GTTTGTGACTTTAAAGTTAA+AGG | - | chr7.4:32398231-32398250 | MS.gene87041:intron | 25.0% |
| !!! | TACCGTAAATTCATTTTTAC+TGG | + | chr7.4:32397504-32397523 | None:intergenic | 25.0% |
| AAAACACTATACAGGACTAT+AGG | + | chr7.4:32398000-32398019 | None:intergenic | 30.0% | |
| AAACACTATACAGGACTATA+GGG | + | chr7.4:32397999-32398018 | None:intergenic | 30.0% | |
| AAAGTAAAAAATCTGAGAGC+AGG | + | chr7.4:32397544-32397563 | None:intergenic | 30.0% | |
| ACAATATTGCTGTCCAAATA+TGG | + | chr7.4:32397242-32397261 | None:intergenic | 30.0% | |
| !! | CATTAAAATTTTGTTTGGCG+AGG | + | chr7.4:32397823-32397842 | None:intergenic | 30.0% |
| !! | TGTTGACTATGCTTTTATAG+TGG | - | chr7.4:32398507-32398526 | MS.gene87041:CDS | 30.0% |
| AAACAACATCCTTGTCATCT+CGG | + | chr7.4:32398561-32398580 | None:intergenic | 35.0% | |
| AACACTATACAGGACTATAG+GGG | + | chr7.4:32397998-32398017 | None:intergenic | 35.0% | |
| AACATCGTGTTCAAAGTGAA+AGG | - | chr7.4:32397346-32397365 | MS.gene87041:intron | 35.0% | |
| AAGGTTATGACCATTTCAGA+TGG | - | chr7.4:32397295-32397314 | MS.gene87041:CDS | 35.0% | |
| AGATAATGACTATGCACGAT+CGG | - | chr7.4:32398085-32398104 | MS.gene87041:intron | 35.0% | |
| ATCTAACAACATTGTTGCTC+AGG | - | chr7.4:32398293-32398312 | MS.gene87041:intron | 35.0% | |
| ! | TTTTAATCGGCAGGACTATA+GGG | + | chr7.4:32397966-32397985 | None:intergenic | 35.0% |
| ! | TTTTTAATCGGCAGGACTAT+AGG | + | chr7.4:32397967-32397986 | None:intergenic | 35.0% |
| AGCGAAGTTTCCATCTGAAA+TGG | + | chr7.4:32397308-32397327 | None:intergenic | 40.0% | |
| ATCATTCTGCTTTACCCCTT+TGG | - | chr7.4:32397565-32397584 | MS.gene87041:CDS | 40.0% | |
| CGATCTTGCATTGTTTATGC+TGG | - | chr7.4:32398267-32398286 | MS.gene87041:intron | 40.0% | |
| TAACGTGTGAACTTAACCGA+TGG | - | chr7.4:32397863-32397882 | MS.gene87041:intron | 40.0% | |
| TTCGCTGTTACTGATGTCAA+TGG | - | chr7.4:32397322-32397341 | MS.gene87041:intron | 40.0% | |
| TTTAATCGGCAGGACTATAG+GGG | + | chr7.4:32397965-32397984 | None:intergenic | 40.0% | |
| TTTGGTCTCAACAAGTCCAT+CGG | + | chr7.4:32397882-32397901 | None:intergenic | 40.0% | |
| AATGACTATGCACGATCGGT+GGG | - | chr7.4:32398089-32398108 | MS.gene87041:intron | 45.0% | |
| CGAGATTAACCGAGATGACA+AGG | - | chr7.4:32398549-32398568 | MS.gene87041:CDS | 45.0% | |
| GCAATATTGTGCTCCATACC+CGG | - | chr7.4:32397252-32397271 | MS.gene87041:CDS | 45.0% | |
| TAATGACTATGCACGATCGG+TGG | - | chr7.4:32398088-32398107 | MS.gene87041:intron | 45.0% | |
| TGCTGTCCAAATATGGCAGT+GGG | + | chr7.4:32397235-32397254 | None:intergenic | 45.0% | |
| TTGCTGTCCAAATATGGCAG+TGG | + | chr7.4:32397236-32397255 | None:intergenic | 45.0% | |
| ! | GCATATGGCTGTGGTTGATA+AGG | + | chr7.4:32397187-32397206 | None:intergenic | 45.0% |
| AATATGGCAGTGGGGTGTAC+CGG | + | chr7.4:32397226-32397245 | None:intergenic | 50.0% | |
| ACGATCGGTGGGAAGCTTAT+AGG | - | chr7.4:32398100-32398119 | MS.gene87041:intron | 50.0% | |
| ATATTGTGCTCCATACCCGG+TGG | - | chr7.4:32397255-32397274 | MS.gene87041:CDS | 50.0% | |
| CGATCGGTGGGAAGCTTATA+GGG | - | chr7.4:32398101-32398120 | MS.gene87041:intron | 50.0% | |
| GATCGGTGGGAAGCTTATAG+GGG | - | chr7.4:32398102-32398121 | MS.gene87041:intron | 50.0% | |
| GCTGTCCAAATATGGCAGTG+GGG | + | chr7.4:32397234-32397253 | None:intergenic | 50.0% | |
| GTACACCCCACTGCCATATT+TGG | - | chr7.4:32397226-32397245 | MS.gene87041:CDS | 50.0% | |
| TGAAGATACCTTGCGACGCA+AGG | + | chr7.4:32397434-32397453 | None:intergenic | 50.0% | |
| CAGCGGCATCAACCAAGACA+CGG | + | chr7.4:32397396-32397415 | None:intergenic | 55.0% | |
| GGATTTGGCGGTCGTGAAGA+AGG | - | chr7.4:32397276-32397295 | MS.gene87041:CDS | 55.0% | |
| TTCACGACCGCCAAATCCAC+CGG | + | chr7.4:32397274-32397293 | None:intergenic | 55.0% | |
| TTGCGACGCAAGGTTGCGAT+GGG | + | chr7.4:32397424-32397443 | None:intergenic | 55.0% | |
| ! | ATCGGCTGTGCAGAGGCATA+TGG | + | chr7.4:32397202-32397221 | None:intergenic | 55.0% |
| ! | TCCATACCCGGTGGATTTGG+CGG | - | chr7.4:32397264-32397283 | MS.gene87041:CDS | 55.0% |
| ! | TGCTCCATACCCGGTGGATT+TGG | - | chr7.4:32397261-32397280 | MS.gene87041:CDS | 55.0% |
| ! | TGTGCAGAGGCATATGGCTG+TGG | + | chr7.4:32397196-32397215 | None:intergenic | 55.0% |
| ACCGCCAAATCCACCGGGTA+TGG | + | chr7.4:32397268-32397287 | None:intergenic | 60.0% | |
| CAACCAAGACACGGCGGTCA+CGG | + | chr7.4:32397387-32397406 | None:intergenic | 60.0% | |
| CATCGCAACCTTGCGTCGCA+AGG | - | chr7.4:32397423-32397442 | MS.gene87041:intron | 60.0% | |
| CGGCATCAACCAAGACACGG+CGG | + | chr7.4:32397393-32397412 | None:intergenic | 60.0% | |
| CTTGCGACGCAAGGTTGCGA+TGG | + | chr7.4:32397425-32397444 | None:intergenic | 60.0% | |
| GGTTGCGATGGGGTAACCAG+CGG | + | chr7.4:32397413-32397432 | None:intergenic | 60.0% | |
| TCACGACCGCCAAATCCACC+GGG | + | chr7.4:32397273-32397292 | None:intergenic | 60.0% | |
| TGCGACGCAAGGTTGCGATG+GGG | + | chr7.4:32397423-32397442 | None:intergenic | 60.0% | |
| ! | CGTGTCTTGGTTGATGCCGC+TGG | - | chr7.4:32397394-32397413 | MS.gene87041:intron | 60.0% |
| CAAGACACGGCGGTCACGGA+GGG | + | chr7.4:32397383-32397402 | None:intergenic | 65.0% | |
| TGCCTCTGCACAGCCGATGC+CGG | - | chr7.4:32397204-32397223 | MS.gene87041:CDS | 65.0% | |
| ! | GCAGTGGGGTGTACCGGCAT+CGG | + | chr7.4:32397220-32397239 | None:intergenic | 65.0% |
| !! | TACCGGCATCGGCTGTGCAG+AGG | + | chr7.4:32397209-32397228 | None:intergenic | 65.0% |
| CCAAGACACGGCGGTCACGG+AGG | + | chr7.4:32397384-32397403 | None:intergenic | 70.0% | |
| CCTCCGTGACCGCCGTGTCT+TGG | - | chr7.4:32397381-32397400 | MS.gene87041:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 32397175 | 32398585 | 32397175 | ID=MS.gene87041 |
| chr7.4 | mRNA | 32397175 | 32398585 | 32397175 | ID=MS.gene87041.t1;Parent=MS.gene87041 |
| chr7.4 | exon | 32398316 | 32398585 | 32398316 | ID=MS.gene87041.t1.exon1;Parent=MS.gene87041.t1 |
| chr7.4 | CDS | 32398316 | 32398585 | 32398316 | ID=cds.MS.gene87041.t1;Parent=MS.gene87041.t1 |
| chr7.4 | exon | 32397446 | 32397673 | 32397446 | ID=MS.gene87041.t1.exon2;Parent=MS.gene87041.t1 |
| chr7.4 | CDS | 32397446 | 32397673 | 32397446 | ID=cds.MS.gene87041.t1;Parent=MS.gene87041.t1 |
| chr7.4 | exon | 32397175 | 32397324 | 32397175 | ID=MS.gene87041.t1.exon3;Parent=MS.gene87041.t1 |
| chr7.4 | CDS | 32397175 | 32397324 | 32397175 | ID=cds.MS.gene87041.t1;Parent=MS.gene87041.t1 |
| Gene Sequence |
| Protein sequence |
