Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42098.t1 | XP_003623537.1 | 98.6 | 215 | 3 | 0 | 1 | 215 | 1 | 215 | 1.80E-115 | 425.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42098.t1 | Q9LZX1 | 59.3 | 209 | 85 | 0 | 3 | 211 | 7 | 215 | 1.1e-73 | 277.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42098.t1 | G7KW19 | 98.6 | 215 | 3 | 0 | 1 | 215 | 1 | 215 | 1.3e-115 | 425.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene42098 | MS.gene26305 | PPI |
| MS.gene87043 | MS.gene42098 | PPI |
| MS.gene42098 | MS.gene87041 | PPI |
| MS.gene42098 | MS.gene42848 | PPI |
| MS.gene87767 | MS.gene42098 | PPI |
| MS.gene42098 | MS.gene051028 | PPI |
| MS.gene42098 | MS.gene87039 | PPI |
| MS.gene42098 | MS.gene42099 | PPI |
| MS.gene42098 | MS.gene91238 | PPI |
| MS.gene42098 | MS.gene009719 | PPI |
| MS.gene91237 | MS.gene42098 | PPI |
| MS.gene42098 | MS.gene87040 | PPI |
| MS.gene42098 | MS.gene25045 | PPI |
| MS.gene42098 | MS.gene87046 | PPI |
| MS.gene42098 | MS.gene87768 | PPI |
| MS.gene42098 | MS.gene81036 | PPI |
| MS.gene42098 | MS.gene87767 | PPI |
| MS.gene42098 | MS.gene87769 | PPI |
| MS.gene42098 | MS.gene009718 | PPI |
| MS.gene42098 | MS.gene99705 | PPI |
| MS.gene42098 | MS.gene42100 | PPI |
| MS.gene42098 | MS.gene42097 | PPI |
| MS.gene42098 | MS.gene87762 | PPI |
| MS.gene009719 | MS.gene42098 | PPI |
| MS.gene42098 | MS.gene42091 | PPI |
| MS.gene42098 | MS.gene42103 | PPI |
| MS.gene42098 | MS.gene87765 | PPI |
| MS.gene42098 | MS.gene42096 | PPI |
| MS.gene42098 | MS.gene87043 | PPI |
| MS.gene42098 | MS.gene87038 | PPI |
| MS.gene42098 | MS.gene91237 | PPI |
| MS.gene42098 | MS.gene99704 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42098.t1 | MTR_7g072140 | 98.605 | 215 | 3 | 0 | 1 | 215 | 1 | 215 | 1.86e-160 | 442 |
| MS.gene42098.t1 | MTR_7g072170 | 85.782 | 211 | 30 | 0 | 1 | 211 | 1 | 211 | 3.59e-135 | 378 |
| MS.gene42098.t1 | MTR_7g072120 | 84.906 | 212 | 32 | 0 | 1 | 212 | 1 | 212 | 1.76e-131 | 369 |
| MS.gene42098.t1 | MTR_7g072270 | 81.604 | 212 | 37 | 2 | 1 | 212 | 1 | 210 | 1.03e-125 | 354 |
| MS.gene42098.t1 | MTR_7g072250 | 70.588 | 221 | 50 | 3 | 1 | 211 | 25 | 240 | 4.21e-103 | 298 |
| MS.gene42098.t1 | MTR_7g072270 | 80.838 | 167 | 30 | 2 | 1 | 167 | 1 | 165 | 1.08e-96 | 278 |
| MS.gene42098.t1 | MTR_4g029430 | 61.458 | 192 | 68 | 3 | 19 | 209 | 11 | 197 | 1.18e-81 | 242 |
| MS.gene42098.t1 | MTR_7g071710 | 81.197 | 117 | 22 | 0 | 94 | 210 | 1 | 117 | 3.96e-69 | 207 |
| MS.gene42098.t1 | MTR_1g014180 | 54.737 | 190 | 75 | 6 | 20 | 204 | 2 | 185 | 4.10e-61 | 189 |
| MS.gene42098.t1 | MTR_1g014150 | 47.312 | 186 | 89 | 5 | 21 | 204 | 11 | 189 | 1.87e-47 | 154 |
| MS.gene42098.t1 | MTR_1g014160 | 41.053 | 190 | 86 | 7 | 33 | 204 | 59 | 240 | 3.73e-30 | 112 |
| MS.gene42098.t1 | MTR_5g074550 | 35.000 | 180 | 103 | 5 | 33 | 203 | 17 | 191 | 3.51e-26 | 100 |
| MS.gene42098.t1 | MTR_2g103840 | 33.333 | 177 | 110 | 5 | 37 | 209 | 32 | 204 | 7.01e-26 | 100 |
| MS.gene42098.t1 | MTR_4g010180 | 29.947 | 187 | 125 | 5 | 27 | 210 | 11 | 194 | 8.42e-26 | 99.8 |
| MS.gene42098.t1 | MTR_2g103850 | 30.508 | 177 | 115 | 5 | 38 | 210 | 34 | 206 | 4.11e-21 | 87.8 |
| MS.gene42098.t1 | MTR_5g074560 | 30.636 | 173 | 110 | 5 | 33 | 203 | 20 | 184 | 2.14e-20 | 85.1 |
| MS.gene42098.t1 | MTR_0650s0010 | 27.638 | 199 | 133 | 5 | 18 | 206 | 2 | 199 | 1.71e-17 | 77.8 |
| MS.gene42098.t1 | MTR_8g099000 | 27.513 | 189 | 117 | 7 | 36 | 206 | 45 | 231 | 2.83e-13 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42098.t1 | AT5G01750 | 59.330 | 209 | 85 | 0 | 3 | 211 | 7 | 215 | 2.36e-100 | 290 |
| MS.gene42098.t1 | AT3G11740 | 65.625 | 192 | 65 | 1 | 22 | 212 | 2 | 193 | 1.99e-94 | 274 |
| MS.gene42098.t1 | AT1G33840 | 53.081 | 211 | 95 | 2 | 1 | 207 | 1 | 211 | 3.22e-76 | 229 |
| MS.gene42098.t1 | AT2G14560 | 55.376 | 186 | 83 | 0 | 23 | 208 | 7 | 192 | 7.56e-76 | 228 |
| MS.gene42098.t1 | AT2G14560 | 55.376 | 186 | 83 | 0 | 23 | 208 | 67 | 252 | 9.26e-75 | 227 |
| MS.gene42098.t1 | AT5G01750 | 55.422 | 166 | 74 | 0 | 3 | 168 | 7 | 172 | 2.89e-72 | 217 |
| MS.gene42098.t1 | AT2G14560 | 54.422 | 147 | 67 | 0 | 23 | 169 | 7 | 153 | 3.28e-60 | 187 |
| MS.gene42098.t1 | AT2G14560 | 54.422 | 147 | 67 | 0 | 23 | 169 | 67 | 213 | 3.73e-59 | 186 |
| MS.gene42098.t1 | AT1G33840 | 49.143 | 175 | 85 | 2 | 1 | 171 | 1 | 175 | 7.93e-57 | 178 |
| MS.gene42098.t1 | AT3G16900 | 41.935 | 186 | 87 | 4 | 23 | 207 | 15 | 180 | 1.04e-47 | 155 |
| MS.gene42098.t1 | AT3G56180 | 38.095 | 189 | 112 | 2 | 20 | 205 | 15 | 201 | 1.37e-43 | 145 |
| MS.gene42098.t1 | AT3G56180 | 37.566 | 189 | 111 | 3 | 20 | 205 | 15 | 199 | 4.13e-41 | 139 |
| MS.gene42098.t1 | AT3G10986 | 32.632 | 190 | 122 | 2 | 22 | 205 | 3 | 192 | 2.99e-34 | 121 |
| MS.gene42098.t1 | AT3G15810 | 31.461 | 178 | 114 | 3 | 36 | 210 | 33 | 205 | 2.79e-26 | 101 |
| MS.gene42098.t1 | AT1G80120 | 33.520 | 179 | 112 | 3 | 36 | 210 | 19 | 194 | 1.87e-20 | 85.9 |
| MS.gene42098.t1 | AT2G30270 | 32.370 | 173 | 103 | 6 | 33 | 203 | 19 | 179 | 4.46e-20 | 84.0 |
| MS.gene42098.t1 | AT2G38640 | 31.073 | 177 | 115 | 4 | 34 | 208 | 23 | 194 | 1.02e-18 | 80.9 |
| MS.gene42098.t1 | AT2G05910 | 25.907 | 193 | 124 | 6 | 22 | 206 | 3 | 184 | 4.57e-15 | 70.9 |
| MS.gene42098.t1 | AT5G20640 | 24.500 | 200 | 134 | 5 | 23 | 207 | 12 | 209 | 5.47e-13 | 65.9 |
| MS.gene42098.t1 | AT5G41590 | 24.091 | 220 | 149 | 6 | 3 | 206 | 2 | 219 | 2.01e-11 | 61.6 |
Find 56 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCTAATTTGGTCTTAAAT+TGG | 0.149524 | 7.3:+32519038 | None:intergenic |
| GTTTGTGACTTTAAAGTTAA+AGG | 0.179324 | 7.3:-32518986 | MS.gene42098:CDS |
| ATTTGGTCTTAAATTGGATT+AGG | 0.250384 | 7.3:+32519044 | None:intergenic |
| CGATCGGTGGGAAGCTTATA+GGG | 0.250481 | 7.3:-32519116 | MS.gene42098:CDS |
| ACCGCCAAATCCACCGGATA+TGG | 0.301714 | 7.3:+32519893 | None:intergenic |
| ACAATATTGCTGTCCGAATA+TGG | 0.302251 | 7.3:+32519919 | None:intergenic |
| ACGATCGGTGGGAAGCTTAT+AGG | 0.303006 | 7.3:-32519117 | MS.gene42098:CDS |
| TTTGGTCTTAAATTGGATTA+GGG | 0.308035 | 7.3:+32519045 | None:intergenic |
| TGCTCCATATCCGGTGGATT+TGG | 0.315197 | 7.3:-32519897 | MS.gene42098:CDS |
| ACAAGGATGTTGTTTATTAG+AGG | 0.333798 | 7.3:-32518665 | None:intergenic |
| AGCTAGAAATACATCTAATT+TGG | 0.353753 | 7.3:+32519027 | None:intergenic |
| AATTGGTAAAGATAATTTCA+TGG | 0.370019 | 7.3:-32518763 | MS.gene42098:CDS |
| ACTTTAAAGTTAAAGGTAGT+TGG | 0.394941 | 7.3:-32518979 | MS.gene42098:CDS |
| GCACACGCCACTGCCATATT+CGG | 0.398255 | 7.3:-32519932 | MS.gene42098:CDS |
| CCTCCGTGACCGCCGTGTCT+TGG | 0.425443 | 7.3:-32519777 | MS.gene42098:CDS |
| GCATATTGCTGTGGTTGATA+AGG | 0.449749 | 7.3:+32519974 | None:intergenic |
| ATCTAACAACATTGTTGCTC+AGG | 0.450402 | 7.3:-32518924 | MS.gene42098:intron |
| GCAATATTGTGCTCCATATC+CGG | 0.451460 | 7.3:-32519906 | MS.gene42098:CDS |
| GGATTTGGCGGTCGTGAAGA+AGG | 0.451475 | 7.3:-32519882 | MS.gene42098:CDS |
| TGCTTCTGCACCGCCGATGC+CGG | 0.452382 | 7.3:-32519954 | MS.gene42098:CDS |
| AACAATGTTGTTAGATTCAC+CGG | 0.467496 | 7.3:+32518931 | None:intergenic |
| GCAGTGGCGTGTGCCGGCAT+CGG | 0.474097 | 7.3:+32519941 | None:intergenic |
| GGCGAAGTTTCCATCTGAAA+TGG | 0.475827 | 7.3:+32519853 | None:intergenic |
| GTGGCGTGTGCCGGCATCGG+CGG | 0.484029 | 7.3:+32519944 | None:intergenic |
| ATAAAAGCATAGTCAACATT+GGG | 0.487398 | 7.3:+32518729 | None:intergenic |
| CGTGTCTTGGTTGATGCCGC+TGG | 0.487594 | 7.3:-32519764 | MS.gene42098:CDS |
| AAACAACATCCTTGTCATCT+CGG | 0.500562 | 7.3:+32518673 | None:intergenic |
| CTTGCGACGCAAGGTTGCGA+TGG | 0.504262 | 7.3:+32519736 | None:intergenic |
| TTCACGACCGCCAAATCCAC+CGG | 0.514338 | 7.3:+32519887 | None:intergenic |
| AATATGGCAGTGGCGTGTGC+CGG | 0.516718 | 7.3:+32519935 | None:intergenic |
| TATAAAAGCATAGTCAACAT+TGG | 0.518797 | 7.3:+32518728 | None:intergenic |
| TTGCGACGCAAGGTTGCGAT+GGG | 0.521495 | 7.3:+32519737 | None:intergenic |
| TCCATATCCGGTGGATTTGG+CGG | 0.526525 | 7.3:-32519894 | MS.gene42098:CDS |
| CAACCAAGACACGGCGGTCA+CGG | 0.526860 | 7.3:+32519774 | None:intergenic |
| CGATCTTGCATTGTTTATGC+CGG | 0.535489 | 7.3:-32518950 | MS.gene42098:CDS |
| TGAAGATACCTTGCGACGCA+AGG | 0.550906 | 7.3:+32519727 | None:intergenic |
| CATCGCAACCTTGCGTCGCA+AGG | 0.559830 | 7.3:-32519735 | MS.gene42098:intron |
| CGAGATTAACCGAGATGACA+AGG | 0.564360 | 7.3:-32518682 | MS.gene42098:CDS |
| AAGGTTATGACCATTTCAGA+TGG | 0.565907 | 7.3:-32519863 | MS.gene42098:CDS |
| TAATGACTATGCACGATCGG+TGG | 0.583902 | 7.3:-32519129 | MS.gene42098:CDS |
| AATATCGTGTTCAAAGTGAA+AGG | 0.584696 | 7.3:-32519812 | MS.gene42098:CDS |
| ATTACCGTTGACATCGGTGA+CGG | 0.596290 | 7.3:+32519832 | None:intergenic |
| AATGACTATGCACGATCGGT+GGG | 0.596769 | 7.3:-32519128 | MS.gene42098:CDS |
| CCAAGACACGGCGGTCACGG+AGG | 0.598529 | 7.3:+32519777 | None:intergenic |
| CAAGACACGGCGGTCACGGA+GGG | 0.598937 | 7.3:+32519778 | None:intergenic |
| GATCGGTGGGAAGCTTATAG+GGG | 0.604354 | 7.3:-32519115 | MS.gene42098:CDS |
| TTGCTGTCCGAATATGGCAG+TGG | 0.605472 | 7.3:+32519925 | None:intergenic |
| TTCGCCGTCACCGATGTCAA+CGG | 0.616899 | 7.3:-32519836 | MS.gene42098:CDS |
| AGATAATGACTATGCACGAT+CGG | 0.620846 | 7.3:-32519132 | MS.gene42098:CDS |
| CACGATATTACCGTTGACAT+CGG | 0.622818 | 7.3:+32519826 | None:intergenic |
| CAGCGGCATCAACCAAGACA+CGG | 0.649793 | 7.3:+32519765 | None:intergenic |
| ATATTGTGCTCCATATCCGG+TGG | 0.665682 | 7.3:-32519903 | MS.gene42098:CDS |
| GGTTGCGATGGGGTAACCAG+CGG | 0.677174 | 7.3:+32519748 | None:intergenic |
| GGTGCAGAAGCATATTGCTG+TGG | 0.711766 | 7.3:+32519965 | None:intergenic |
| TGCGACGCAAGGTTGCGATG+GGG | 0.730177 | 7.3:+32519738 | None:intergenic |
| CGGCATCAACCAAGACACGG+CGG | 0.788571 | 7.3:+32519768 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACACATTAATTTTTTTTTGA+AGG | + | chr7.3:32519318-32519337 | None:intergenic | 15.0% |
| !!! | TTCATCACTTTTAAAAATAA+TGG | - | chr7.3:32519098-32519117 | MS.gene42098:CDS | 15.0% |
| !! | AAATTAATGTGTGAACTTAA+CGG | - | chr7.3:32519326-32519345 | MS.gene42098:intron | 20.0% |
| !! | AATTGGTAAAGATAATTTCA+TGG | - | chr7.3:32519888-32519907 | MS.gene42098:CDS | 20.0% |
| !! | ATAAGCTAAAATATTAACCT+CGG | - | chr7.3:32519269-32519288 | MS.gene42098:intron | 20.0% |
| !! | TACCAGTAAAAATGAATTTA+CGG | - | chr7.3:32518992-32519011 | MS.gene42098:CDS | 20.0% |
| !!! | ACTAATCACAAATCAATTTT+TGG | - | chr7.3:32519816-32519835 | MS.gene42098:CDS | 20.0% |
| !!! | GTTTTTTAAATCTTGTTTCT+TGG | - | chr7.3:32519449-32519468 | MS.gene42098:intron | 20.0% |
| ! | AATGATTTCGATTATGTGTT+TGG | - | chr7.3:32519493-32519512 | MS.gene42098:intron | 25.0% |
| ! | AGCTAGAAATACATCTAATT+TGG | + | chr7.3:32519627-32519646 | None:intergenic | 25.0% |
| ! | ATTGCAATAAAAATGACCAA+AGG | + | chr7.3:32519077-32519096 | None:intergenic | 25.0% |
| ! | TTGCAATAAAAATGACCAAA+GGG | + | chr7.3:32519076-32519095 | None:intergenic | 25.0% |
| !! | ATAAAAGCATAGTCAACATT+GGG | + | chr7.3:32519925-32519944 | None:intergenic | 25.0% |
| !! | CACGTCTAACATAATATTTT+TGG | + | chr7.3:32519367-32519386 | None:intergenic | 25.0% |
| !! | TATAAAAGCATAGTCAACAT+TGG | + | chr7.3:32519926-32519945 | None:intergenic | 25.0% |
| !!! | ACAGTTCAGAGTATTTTAAT+TGG | - | chr7.3:32519871-32519890 | MS.gene42098:CDS | 25.0% |
| !!! | ACTTTAAAGTTAAAGGTAGT+TGG | - | chr7.3:32519672-32519691 | MS.gene42098:intron | 25.0% |
| !!! | ATTTGGTCTTAAATTGGATT+AGG | + | chr7.3:32519610-32519629 | None:intergenic | 25.0% |
| !!! | CATCTAATTTGGTCTTAAAT+TGG | + | chr7.3:32519616-32519635 | None:intergenic | 25.0% |
| !!! | GTTTGTGACTTTAAAGTTAA+AGG | - | chr7.3:32519665-32519684 | MS.gene42098:intron | 25.0% |
| !!! | TACCGTAAATTCATTTTTAC+TGG | + | chr7.3:32518997-32519016 | None:intergenic | 25.0% |
| !!! | TTTGGTCTTAAATTGGATTA+GGG | + | chr7.3:32519609-32519628 | None:intergenic | 25.0% |
| AAAACACTATACACGACTAT+AGG | + | chr7.3:32519434-32519453 | None:intergenic | 30.0% | |
| AAACACTATACACGACTATA+GGG | + | chr7.3:32519433-32519452 | None:intergenic | 30.0% | |
| AAAGTAAAAAATCTGAGAGC+AGG | + | chr7.3:32519037-32519056 | None:intergenic | 30.0% | |
| AACAATGTTGTTAGATTCAC+CGG | + | chr7.3:32519723-32519742 | None:intergenic | 30.0% | |
| AATATCGTGTTCAAAGTGAA+AGG | - | chr7.3:32518839-32518858 | MS.gene42098:intron | 30.0% | |
| TGCAATAAAAATGACCAAAG+GGG | + | chr7.3:32519075-32519094 | None:intergenic | 30.0% | |
| !! | TGTTGACTATGCTTTTATAG+TGG | - | chr7.3:32519927-32519946 | MS.gene42098:CDS | 30.0% |
| AAACAACATCCTTGTCATCT+CGG | + | chr7.3:32519981-32520000 | None:intergenic | 35.0% | |
| AACACTATACACGACTATAG+GGG | + | chr7.3:32519432-32519451 | None:intergenic | 35.0% | |
| AAGGTTATGACCATTTCAGA+TGG | - | chr7.3:32518788-32518807 | MS.gene42098:CDS | 35.0% | |
| ACAATATTGCTGTCCGAATA+TGG | + | chr7.3:32518735-32518754 | None:intergenic | 35.0% | |
| AGATAATGACTATGCACGAT+CGG | - | chr7.3:32519519-32519538 | MS.gene42098:intron | 35.0% | |
| ATCTAACAACATTGTTGCTC+AGG | - | chr7.3:32519727-32519746 | MS.gene42098:intron | 35.0% | |
| CATTAAAATTTCGTTTGCCG+AGG | + | chr7.3:32519289-32519308 | None:intergenic | 35.0% | |
| TAATGTGTGAACTTAACGGA+TGG | - | chr7.3:32519330-32519349 | MS.gene42098:intron | 35.0% | |
| ATCATTCTGCTTTACCCCTT+TGG | - | chr7.3:32519058-32519077 | MS.gene42098:CDS | 40.0% | |
| CACGATATTACCGTTGACAT+CGG | + | chr7.3:32518828-32518847 | None:intergenic | 40.0% | |
| CGATCTTGCATTGTTTATGC+CGG | - | chr7.3:32519701-32519720 | MS.gene42098:intron | 40.0% | |
| GCAATATTGTGCTCCATATC+CGG | - | chr7.3:32518745-32518764 | MS.gene42098:CDS | 40.0% | |
| ! | GCATATTGCTGTGGTTGATA+AGG | + | chr7.3:32518680-32518699 | None:intergenic | 40.0% |
| AATGACTATGCACGATCGGT+GGG | - | chr7.3:32519523-32519542 | MS.gene42098:intron | 45.0% | |
| ATATTGTGCTCCATATCCGG+TGG | - | chr7.3:32518748-32518767 | MS.gene42098:CDS | 45.0% | |
| ATTACCGTTGACATCGGTGA+CGG | + | chr7.3:32518822-32518841 | None:intergenic | 45.0% | |
| CGAGATTAACCGAGATGACA+AGG | - | chr7.3:32519969-32519988 | MS.gene42098:CDS | 45.0% | |
| GGCGAAGTTTCCATCTGAAA+TGG | + | chr7.3:32518801-32518820 | None:intergenic | 45.0% | |
| TAATGACTATGCACGATCGG+TGG | - | chr7.3:32519522-32519541 | MS.gene42098:intron | 45.0% | |
| ACGATCGGTGGGAAGCTTAT+AGG | - | chr7.3:32519534-32519553 | MS.gene42098:intron | 50.0% | |
| CGATCGGTGGGAAGCTTATA+GGG | - | chr7.3:32519535-32519554 | MS.gene42098:intron | 50.0% | |
| GATCGGTGGGAAGCTTATAG+GGG | - | chr7.3:32519536-32519555 | MS.gene42098:intron | 50.0% | |
| TGAAGATACCTTGCGACGCA+AGG | + | chr7.3:32518927-32518946 | None:intergenic | 50.0% | |
| TTGCTGTCCGAATATGGCAG+TGG | + | chr7.3:32518729-32518748 | None:intergenic | 50.0% | |
| ! | GGTGCAGAAGCATATTGCTG+TGG | + | chr7.3:32518689-32518708 | None:intergenic | 50.0% |
| ! | TCCATATCCGGTGGATTTGG+CGG | - | chr7.3:32518757-32518776 | MS.gene42098:CDS | 50.0% |
| ! | TGCTCCATATCCGGTGGATT+TGG | - | chr7.3:32518754-32518773 | MS.gene42098:CDS | 50.0% |
| AATATGGCAGTGGCGTGTGC+CGG | + | chr7.3:32518719-32518738 | None:intergenic | 55.0% | |
| ACCGCCAAATCCACCGGATA+TGG | + | chr7.3:32518761-32518780 | None:intergenic | 55.0% | |
| CAGCGGCATCAACCAAGACA+CGG | + | chr7.3:32518889-32518908 | None:intergenic | 55.0% | |
| GCACACGCCACTGCCATATT+CGG | - | chr7.3:32518719-32518738 | MS.gene42098:CDS | 55.0% | |
| GGATTTGGCGGTCGTGAAGA+AGG | - | chr7.3:32518769-32518788 | MS.gene42098:CDS | 55.0% | |
| TTCACGACCGCCAAATCCAC+CGG | + | chr7.3:32518767-32518786 | None:intergenic | 55.0% | |
| TTCGCCGTCACCGATGTCAA+CGG | - | chr7.3:32518815-32518834 | MS.gene42098:intron | 55.0% | |
| TTGCGACGCAAGGTTGCGAT+GGG | + | chr7.3:32518917-32518936 | None:intergenic | 55.0% | |
| CAACCAAGACACGGCGGTCA+CGG | + | chr7.3:32518880-32518899 | None:intergenic | 60.0% | |
| CATCGCAACCTTGCGTCGCA+AGG | - | chr7.3:32518916-32518935 | MS.gene42098:intron | 60.0% | |
| CGGCATCAACCAAGACACGG+CGG | + | chr7.3:32518886-32518905 | None:intergenic | 60.0% | |
| CTTGCGACGCAAGGTTGCGA+TGG | + | chr7.3:32518918-32518937 | None:intergenic | 60.0% | |
| GGTTGCGATGGGGTAACCAG+CGG | + | chr7.3:32518906-32518925 | None:intergenic | 60.0% | |
| TGCGACGCAAGGTTGCGATG+GGG | + | chr7.3:32518916-32518935 | None:intergenic | 60.0% | |
| ! | CGTGTCTTGGTTGATGCCGC+TGG | - | chr7.3:32518887-32518906 | MS.gene42098:intron | 60.0% |
| CAAGACACGGCGGTCACGGA+GGG | + | chr7.3:32518876-32518895 | None:intergenic | 65.0% | |
| TGCTTCTGCACCGCCGATGC+CGG | - | chr7.3:32518697-32518716 | MS.gene42098:CDS | 65.0% | |
| CCAAGACACGGCGGTCACGG+AGG | + | chr7.3:32518877-32518896 | None:intergenic | 70.0% | |
| CCTCCGTGACCGCCGTGTCT+TGG | - | chr7.3:32518874-32518893 | MS.gene42098:intron | 70.0% | |
| ! | GCAGTGGCGTGTGCCGGCAT+CGG | + | chr7.3:32518713-32518732 | None:intergenic | 70.0% |
| ! | GTGGCGTGTGCCGGCATCGG+CGG | + | chr7.3:32518710-32518729 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 32518668 | 32520005 | 32518668 | ID=MS.gene42098 |
| chr7.3 | mRNA | 32518668 | 32520005 | 32518668 | ID=MS.gene42098.t1;Parent=MS.gene42098 |
| chr7.3 | exon | 32519736 | 32520005 | 32519736 | ID=MS.gene42098.t1.exon1;Parent=MS.gene42098.t1 |
| chr7.3 | CDS | 32519736 | 32520005 | 32519736 | ID=cds.MS.gene42098.t1;Parent=MS.gene42098.t1 |
| chr7.3 | exon | 32518925 | 32519152 | 32518925 | ID=MS.gene42098.t1.exon2;Parent=MS.gene42098.t1 |
| chr7.3 | CDS | 32518925 | 32519152 | 32518925 | ID=cds.MS.gene42098.t1;Parent=MS.gene42098.t1 |
| chr7.3 | exon | 32518668 | 32518817 | 32518668 | ID=MS.gene42098.t1.exon3;Parent=MS.gene42098.t1 |
| chr7.3 | CDS | 32518668 | 32518817 | 32518668 | ID=cds.MS.gene42098.t1;Parent=MS.gene42098.t1 |
| Gene Sequence |
| Protein sequence |
