Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87767.t1 | XP_003623537.1 | 98.1 | 215 | 4 | 0 | 1 | 215 | 1 | 215 | 6.70E-115 | 423.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87767.t1 | Q9LZX1 | 58.9 | 209 | 86 | 0 | 3 | 211 | 7 | 215 | 2.0e-72 | 273.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87767.t1 | G7KW19 | 98.1 | 215 | 4 | 0 | 1 | 215 | 1 | 215 | 4.8e-115 | 423.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene91237 | MS.gene87767 | PPI |
| MS.gene87767 | MS.gene99704 | PPI |
| MS.gene87767 | MS.gene42096 | PPI |
| MS.gene87767 | MS.gene42098 | PPI |
| MS.gene87767 | MS.gene26305 | PPI |
| MS.gene87767 | MS.gene87041 | PPI |
| MS.gene87767 | MS.gene42848 | PPI |
| MS.gene87767 | MS.gene051028 | PPI |
| MS.gene87767 | MS.gene87039 | PPI |
| MS.gene009719 | MS.gene87767 | PPI |
| MS.gene87767 | MS.gene42099 | PPI |
| MS.gene87767 | MS.gene91238 | PPI |
| MS.gene87767 | MS.gene009719 | PPI |
| MS.gene42098 | MS.gene87767 | PPI |
| MS.gene87767 | MS.gene87040 | PPI |
| MS.gene87767 | MS.gene25045 | PPI |
| MS.gene87767 | MS.gene87046 | PPI |
| MS.gene87767 | MS.gene87768 | PPI |
| MS.gene87767 | MS.gene81036 | PPI |
| MS.gene87043 | MS.gene87767 | PPI |
| MS.gene87767 | MS.gene87769 | PPI |
| MS.gene87767 | MS.gene009718 | PPI |
| MS.gene87767 | MS.gene99705 | PPI |
| MS.gene87767 | MS.gene42100 | PPI |
| MS.gene87767 | MS.gene42097 | PPI |
| MS.gene87767 | MS.gene87762 | PPI |
| MS.gene87767 | MS.gene42091 | PPI |
| MS.gene87767 | MS.gene42103 | PPI |
| MS.gene87767 | MS.gene87765 | PPI |
| MS.gene87767 | MS.gene87043 | PPI |
| MS.gene87767 | MS.gene87038 | PPI |
| MS.gene87767 | MS.gene91237 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87767.t1 | MTR_7g072140 | 98.140 | 215 | 4 | 0 | 1 | 215 | 1 | 215 | 7.81e-160 | 440 |
| MS.gene87767.t1 | MTR_7g072170 | 86.256 | 211 | 29 | 0 | 1 | 211 | 1 | 211 | 7.91e-136 | 380 |
| MS.gene87767.t1 | MTR_7g072120 | 86.854 | 213 | 26 | 2 | 1 | 212 | 1 | 212 | 1.87e-133 | 373 |
| MS.gene87767.t1 | MTR_7g072270 | 82.075 | 212 | 36 | 2 | 1 | 212 | 1 | 210 | 1.52e-126 | 356 |
| MS.gene87767.t1 | MTR_7g072250 | 71.041 | 221 | 49 | 3 | 1 | 211 | 25 | 240 | 4.32e-104 | 300 |
| MS.gene87767.t1 | MTR_7g072270 | 81.437 | 167 | 29 | 2 | 1 | 167 | 1 | 165 | 9.85e-98 | 281 |
| MS.gene87767.t1 | MTR_4g029430 | 61.458 | 192 | 68 | 3 | 19 | 209 | 11 | 197 | 2.46e-81 | 241 |
| MS.gene87767.t1 | MTR_7g071710 | 81.197 | 117 | 22 | 0 | 94 | 210 | 1 | 117 | 5.15e-69 | 207 |
| MS.gene87767.t1 | MTR_1g014180 | 54.787 | 188 | 74 | 6 | 22 | 204 | 4 | 185 | 3.59e-60 | 187 |
| MS.gene87767.t1 | MTR_1g014150 | 47.312 | 186 | 89 | 5 | 21 | 204 | 11 | 189 | 3.82e-47 | 154 |
| MS.gene87767.t1 | MTR_1g014160 | 41.053 | 190 | 86 | 7 | 33 | 204 | 59 | 240 | 2.51e-30 | 112 |
| MS.gene87767.t1 | MTR_5g074550 | 35.000 | 180 | 103 | 5 | 33 | 203 | 17 | 191 | 6.79e-26 | 99.8 |
| MS.gene87767.t1 | MTR_2g103840 | 32.768 | 177 | 111 | 5 | 37 | 209 | 32 | 204 | 9.35e-25 | 97.4 |
| MS.gene87767.t1 | MTR_4g010180 | 29.412 | 187 | 126 | 5 | 27 | 210 | 11 | 194 | 1.15e-24 | 96.7 |
| MS.gene87767.t1 | MTR_2g103850 | 30.508 | 177 | 115 | 5 | 38 | 210 | 34 | 206 | 7.61e-21 | 87.0 |
| MS.gene87767.t1 | MTR_5g074560 | 30.636 | 173 | 110 | 5 | 33 | 203 | 20 | 184 | 6.26e-20 | 84.0 |
| MS.gene87767.t1 | MTR_0650s0010 | 28.351 | 194 | 128 | 5 | 23 | 206 | 7 | 199 | 2.81e-17 | 77.0 |
| MS.gene87767.t1 | MTR_8g099000 | 28.571 | 189 | 115 | 7 | 36 | 206 | 45 | 231 | 2.83e-14 | 69.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene87767.t1 | AT5G01750 | 58.852 | 209 | 86 | 0 | 3 | 211 | 7 | 215 | 9.34e-99 | 286 |
| MS.gene87767.t1 | AT3G11740 | 65.104 | 192 | 66 | 1 | 22 | 212 | 2 | 193 | 3.46e-93 | 271 |
| MS.gene87767.t1 | AT2G14560 | 54.737 | 190 | 86 | 0 | 19 | 208 | 3 | 192 | 5.87e-77 | 230 |
| MS.gene87767.t1 | AT2G14560 | 54.737 | 190 | 86 | 0 | 19 | 208 | 63 | 252 | 9.81e-76 | 229 |
| MS.gene87767.t1 | AT1G33840 | 52.607 | 211 | 96 | 2 | 1 | 207 | 1 | 211 | 3.29e-75 | 226 |
| MS.gene87767.t1 | AT5G01750 | 54.819 | 166 | 75 | 0 | 3 | 168 | 7 | 172 | 1.15e-70 | 213 |
| MS.gene87767.t1 | AT2G14560 | 53.642 | 151 | 70 | 0 | 19 | 169 | 3 | 153 | 2.51e-61 | 189 |
| MS.gene87767.t1 | AT2G14560 | 53.642 | 151 | 70 | 0 | 19 | 169 | 63 | 213 | 4.63e-60 | 188 |
| MS.gene87767.t1 | AT1G33840 | 48.571 | 175 | 86 | 2 | 1 | 171 | 1 | 175 | 9.00e-56 | 176 |
| MS.gene87767.t1 | AT3G16900 | 41.398 | 186 | 88 | 4 | 23 | 207 | 15 | 180 | 2.09e-46 | 152 |
| MS.gene87767.t1 | AT3G56180 | 37.968 | 187 | 111 | 2 | 22 | 205 | 17 | 201 | 6.45e-43 | 144 |
| MS.gene87767.t1 | AT3G56180 | 37.433 | 187 | 110 | 3 | 22 | 205 | 17 | 199 | 1.87e-40 | 137 |
| MS.gene87767.t1 | AT3G10986 | 32.632 | 190 | 122 | 2 | 22 | 205 | 3 | 192 | 5.34e-34 | 120 |
| MS.gene87767.t1 | AT3G15810 | 31.461 | 178 | 114 | 3 | 36 | 210 | 33 | 205 | 3.27e-26 | 101 |
| MS.gene87767.t1 | AT2G30270 | 32.370 | 173 | 103 | 6 | 33 | 203 | 19 | 179 | 5.92e-20 | 84.0 |
| MS.gene87767.t1 | AT1G80120 | 32.961 | 179 | 113 | 3 | 36 | 210 | 19 | 194 | 1.59e-19 | 83.2 |
| MS.gene87767.t1 | AT2G38640 | 29.381 | 194 | 130 | 4 | 17 | 208 | 6 | 194 | 5.63e-19 | 81.6 |
| MS.gene87767.t1 | AT2G05910 | 25.907 | 193 | 124 | 6 | 22 | 206 | 3 | 184 | 6.16e-15 | 70.5 |
| MS.gene87767.t1 | AT5G20640 | 24.257 | 202 | 136 | 5 | 23 | 209 | 12 | 211 | 5.25e-13 | 65.9 |
| MS.gene87767.t1 | AT5G41590 | 24.091 | 220 | 149 | 6 | 3 | 206 | 2 | 219 | 2.38e-11 | 61.2 |
Find 56 sgRNAs with CRISPR-Local
Find 77 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCTAATTTGGTCTTAAAT+TGG | 0.149524 | 7.1:+29923539 | None:intergenic |
| GCACACCCCACTGCCATATT+TGG | 0.177684 | 7.1:-29924462 | MS.gene87767:CDS |
| GTTTGTGACTTTAAAGTTAA+AGG | 0.184787 | 7.1:-29923487 | MS.gene87767:CDS |
| ATTTGGTCTTAAATTGGATT+AGG | 0.250384 | 7.1:+29923545 | None:intergenic |
| CGATCGGTGGGAAGCTTATA+GGG | 0.250481 | 7.1:-29923617 | MS.gene87767:CDS |
| ACGATCGGTGGGAAGCTTAT+AGG | 0.303006 | 7.1:-29923618 | MS.gene87767:CDS |
| ACAATATTGCTGTCCAAATA+TGG | 0.305124 | 7.1:+29924449 | None:intergenic |
| TTTGGTCTTAAATTGGATTA+GGG | 0.308035 | 7.1:+29923546 | None:intergenic |
| TGCTCCATACCCGGTGGATT+TGG | 0.310766 | 7.1:-29924427 | MS.gene87767:CDS |
| ACAAGGATGTTGTTTATTAG+AGG | 0.333798 | 7.1:-29923152 | None:intergenic |
| AGCTAGAAATACATCTAATT+TGG | 0.353753 | 7.1:+29923528 | None:intergenic |
| AATTGGTAAAGATAATTTCA+TGG | 0.370019 | 7.1:-29923250 | MS.gene87767:CDS |
| CCTCCGTGACCGCCGTGTCT+TGG | 0.425443 | 7.1:-29924307 | MS.gene87767:CDS |
| GCAGTGGGGTGTGCCGGCAT+CGG | 0.448228 | 7.1:+29924471 | None:intergenic |
| ACCGCCAAATCCACCGGGTA+TGG | 0.448876 | 7.1:+29924423 | None:intergenic |
| GCATATTGCTGTGGTTGATA+AGG | 0.449749 | 7.1:+29924504 | None:intergenic |
| ATCTAACAACATTGTTGCTC+AGG | 0.450402 | 7.1:-29923425 | MS.gene87767:intron |
| GGATTTGGCGGTCGTGAAGA+AGG | 0.451475 | 7.1:-29924412 | MS.gene87767:CDS |
| TGCTTCTGCACCGCCGATGC+CGG | 0.452382 | 7.1:-29924484 | MS.gene87767:CDS |
| AGCGAAGTTTCCATCTGAAA+TGG | 0.466269 | 7.1:+29924383 | None:intergenic |
| AACAATGTTGTTAGATTCAC+CGG | 0.467496 | 7.1:+29923432 | None:intergenic |
| GTGGGGTGTGCCGGCATCGG+CGG | 0.478463 | 7.1:+29924474 | None:intergenic |
| CGTGTCTTGGTTGATGCAGC+TGG | 0.478887 | 7.1:-29924294 | MS.gene87767:CDS |
| ATAAAAGCATAGTCAACATT+GGG | 0.487398 | 7.1:+29923216 | None:intergenic |
| ACTTTAAAGTTAAAGGCAGT+TGG | 0.487678 | 7.1:-29923480 | MS.gene87767:CDS |
| AATATGGCAGTGGGGTGTGC+CGG | 0.497471 | 7.1:+29924465 | None:intergenic |
| AAACAACATCCTTGTCATCT+CGG | 0.500562 | 7.1:+29923160 | None:intergenic |
| TTCACGACCGCCAAATCCAC+CGG | 0.502250 | 7.1:+29924417 | None:intergenic |
| TTGCGACGCAAGGTTGTGAT+GGG | 0.507826 | 7.1:+29924267 | None:intergenic |
| CTTGCGACGCAAGGTTGTGA+TGG | 0.515388 | 7.1:+29924266 | None:intergenic |
| TCCATACCCGGTGGATTTGG+CGG | 0.515684 | 7.1:-29924424 | MS.gene87767:CDS |
| TATAAAAGCATAGTCAACAT+TGG | 0.518797 | 7.1:+29923215 | None:intergenic |
| CAACCAAGACACGGCGGTCA+CGG | 0.526860 | 7.1:+29924304 | None:intergenic |
| CGATCTTGCATTGTTTATGC+CGG | 0.535489 | 7.1:-29923451 | MS.gene87767:CDS |
| TTCGCTGTTACTGATGTCAA+TGG | 0.543600 | 7.1:-29924366 | MS.gene87767:CDS |
| TTGCTGTCCAAATATGGCAG+TGG | 0.548442 | 7.1:+29924455 | None:intergenic |
| TGAAGATACCTTGCGACGCA+AGG | 0.550906 | 7.1:+29924257 | None:intergenic |
| GCAATATTGTGCTCCATACC+CGG | 0.555147 | 7.1:-29924436 | MS.gene87767:CDS |
| CGAGATTAACCGAGATGACA+AGG | 0.564360 | 7.1:-29923169 | MS.gene87767:CDS |
| AAGGTTATGACCATTTCAGA+TGG | 0.565907 | 7.1:-29924393 | MS.gene87767:CDS |
| TGCTGTCCAAATATGGCAGT+GGG | 0.574892 | 7.1:+29924456 | None:intergenic |
| CATCACAACCTTGCGTCGCA+AGG | 0.581532 | 7.1:-29924265 | MS.gene87767:intron |
| TAATGACTATGCACGATCGG+TGG | 0.589090 | 7.1:-29923630 | MS.gene87767:CDS |
| AATGACTATGCACGATCGGT+GGG | 0.596769 | 7.1:-29923629 | MS.gene87767:CDS |
| CCAAGACACGGCGGTCACGG+AGG | 0.598529 | 7.1:+29924307 | None:intergenic |
| CAAGACACGGCGGTCACGGA+GGG | 0.598937 | 7.1:+29924308 | None:intergenic |
| AACATCGTGTTCAAAGTGAA+AGG | 0.602205 | 7.1:-29924342 | MS.gene87767:CDS |
| GATCGGTGGGAAGCTTATAG+GGG | 0.604354 | 7.1:-29923616 | MS.gene87767:CDS |
| TCACGACCGCCAAATCCACC+GGG | 0.620180 | 7.1:+29924418 | None:intergenic |
| AGATAATGACTATGCACGAT+CGG | 0.620846 | 7.1:-29923633 | MS.gene87767:CDS |
| CAGCTGCATCAACCAAGACA+CGG | 0.655751 | 7.1:+29924295 | None:intergenic |
| TGCGACGCAAGGTTGTGATG+GGG | 0.705723 | 7.1:+29924268 | None:intergenic |
| GGTGCAGAAGCATATTGCTG+TGG | 0.711766 | 7.1:+29924495 | None:intergenic |
| ATATTGTGCTCCATACCCGG+TGG | 0.724339 | 7.1:-29924433 | MS.gene87767:CDS |
| CTGCATCAACCAAGACACGG+CGG | 0.770095 | 7.1:+29924298 | None:intergenic |
| GCTGTCCAAATATGGCAGTG+GGG | 0.779761 | 7.1:+29924457 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CTATTTAACAAATAAATAAT+AGG | - | chr7.1:29923457-29923476 | MS.gene87767:CDS | 10.0% |
| !!! | CACATTAATTTTTTTTTTGA+AGG | + | chr7.1:29923836-29923855 | None:intergenic | 15.0% |
| !!! | TTCATCACTTTTAAAAATAA+TGG | - | chr7.1:29923608-29923627 | MS.gene87767:CDS | 15.0% |
| !! | AAATTAATGTGTGAACTTAA+TGG | - | chr7.1:29923845-29923864 | MS.gene87767:intron | 20.0% |
| !! | AATTGGTAAAGATAATTTCA+TGG | - | chr7.1:29924418-29924437 | MS.gene87767:CDS | 20.0% |
| !! | AGATTTAAAAAACACTATAC+AGG | + | chr7.1:29923959-29923978 | None:intergenic | 20.0% |
| !! | TACCAGTAAAAATGAATTTA+CGG | - | chr7.1:29923484-29923503 | MS.gene87767:CDS | 20.0% |
| !!! | AATGATTTCGATTATGTTTT+TGG | - | chr7.1:29924009-29924028 | MS.gene87767:intron | 20.0% |
| !!! | ACACACATTAAAATTTTGTT+TGG | + | chr7.1:29923812-29923831 | None:intergenic | 20.0% |
| !!! | ACTAATCACAAATCAATTTT+TGG | - | chr7.1:29924346-29924365 | MS.gene87767:CDS | 20.0% |
| !!! | CAGTTCTAACATAATATTTT+TGG | + | chr7.1:29923886-29923905 | None:intergenic | 20.0% |
| !!! | GGTCATTTTTATTGTTTAAA+TGG | - | chr7.1:29923571-29923590 | MS.gene87767:CDS | 20.0% |
| ! | AAAGTAAAATATCTGAAAGC+AGG | + | chr7.1:29923529-29923548 | None:intergenic | 25.0% |
| ! | AACAATAAAAATGACCAAAG+AGG | + | chr7.1:29923567-29923586 | None:intergenic | 25.0% |
| ! | AGCTAGAAATACATCTAATT+TGG | + | chr7.1:29924143-29924162 | None:intergenic | 25.0% |
| !! | ATAAAAGCATAGTCAACATT+GGG | + | chr7.1:29924455-29924474 | None:intergenic | 25.0% |
| !! | TATAAAAGCATAGTCAACAT+TGG | + | chr7.1:29924456-29924475 | None:intergenic | 25.0% |
| !!! | ACAGTTCAGAGTATTTTAAT+TGG | - | chr7.1:29924401-29924420 | MS.gene87767:CDS | 25.0% |
| !!! | ATTTGGTCTTAAATTGGATT+AGG | + | chr7.1:29924126-29924145 | None:intergenic | 25.0% |
| !!! | CATCTAATTTGGTCTTAAAT+TGG | + | chr7.1:29924132-29924151 | None:intergenic | 25.0% |
| !!! | GTTTGTGACTTTAAAGTTAA+AGG | - | chr7.1:29924181-29924200 | MS.gene87767:intron | 25.0% |
| !!! | TACCGTAAATTCATTTTTAC+TGG | + | chr7.1:29923489-29923508 | None:intergenic | 25.0% |
| !!! | TTTGGTCTTAAATTGGATTA+GGG | + | chr7.1:29924125-29924144 | None:intergenic | 25.0% |
| AAAACACTATACAGGACTAT+AGG | + | chr7.1:29923951-29923970 | None:intergenic | 30.0% | |
| AAACACTATACAGGACTATA+GGG | + | chr7.1:29923950-29923969 | None:intergenic | 30.0% | |
| AACAATGTTGTTAGATTCAC+CGG | + | chr7.1:29924239-29924258 | None:intergenic | 30.0% | |
| ACAATATTGCTGTCCAAATA+TGG | + | chr7.1:29923222-29923241 | None:intergenic | 30.0% | |
| TAATGTGTGAACTTAATGGA+TGG | - | chr7.1:29923849-29923868 | MS.gene87767:intron | 30.0% | |
| !! | ACTTTAAAGTTAAAGGCAGT+TGG | - | chr7.1:29924188-29924207 | MS.gene87767:intron | 30.0% |
| !! | CATTAAAATTTTGTTTGGCG+AGG | + | chr7.1:29923807-29923826 | None:intergenic | 30.0% |
| !! | TGTTGACTATGCTTTTATAG+TGG | - | chr7.1:29924457-29924476 | MS.gene87767:CDS | 30.0% |
| AAACAACATCCTTGTCATCT+CGG | + | chr7.1:29924511-29924530 | None:intergenic | 35.0% | |
| AACACTATACAGGACTATAG+GGG | + | chr7.1:29923949-29923968 | None:intergenic | 35.0% | |
| AACATCGTGTTCAAAGTGAA+AGG | - | chr7.1:29923326-29923345 | MS.gene87767:intron | 35.0% | |
| AAGGTTATGACCATTTCAGA+TGG | - | chr7.1:29923275-29923294 | MS.gene87767:CDS | 35.0% | |
| AGATAATGACTATGCACGAT+CGG | - | chr7.1:29924035-29924054 | MS.gene87767:intron | 35.0% | |
| ATCATTCTGCTTTACCTCTT+TGG | - | chr7.1:29923550-29923569 | MS.gene87767:CDS | 35.0% | |
| ATCTAACAACATTGTTGCTC+AGG | - | chr7.1:29924243-29924262 | MS.gene87767:intron | 35.0% | |
| AGCGAAGTTTCCATCTGAAA+TGG | + | chr7.1:29923288-29923307 | None:intergenic | 40.0% | |
| CGATCTTGCATTGTTTATGC+CGG | - | chr7.1:29924217-29924236 | MS.gene87767:intron | 40.0% | |
| TTCGCTGTTACTGATGTCAA+TGG | - | chr7.1:29923302-29923321 | MS.gene87767:intron | 40.0% | |
| ! | GCATATTGCTGTGGTTGATA+AGG | + | chr7.1:29923167-29923186 | None:intergenic | 40.0% |
| AATGACTATGCACGATCGGT+GGG | - | chr7.1:29924039-29924058 | MS.gene87767:intron | 45.0% | |
| CGAGATTAACCGAGATGACA+AGG | - | chr7.1:29924499-29924518 | MS.gene87767:CDS | 45.0% | |
| GCAATATTGTGCTCCATACC+CGG | - | chr7.1:29923232-29923251 | MS.gene87767:CDS | 45.0% | |
| TAATGACTATGCACGATCGG+TGG | - | chr7.1:29924038-29924057 | MS.gene87767:intron | 45.0% | |
| TGCTGTCCAAATATGGCAGT+GGG | + | chr7.1:29923215-29923234 | None:intergenic | 45.0% | |
| TTGCTGTCCAAATATGGCAG+TGG | + | chr7.1:29923216-29923235 | None:intergenic | 45.0% | |
| ACGATCGGTGGGAAGCTTAT+AGG | - | chr7.1:29924050-29924069 | MS.gene87767:intron | 50.0% | |
| ATATTGTGCTCCATACCCGG+TGG | - | chr7.1:29923235-29923254 | MS.gene87767:CDS | 50.0% | |
| CAGCTGCATCAACCAAGACA+CGG | + | chr7.1:29923376-29923395 | None:intergenic | 50.0% | |
| CGATCGGTGGGAAGCTTATA+GGG | - | chr7.1:29924051-29924070 | MS.gene87767:intron | 50.0% | |
| GATCGGTGGGAAGCTTATAG+GGG | - | chr7.1:29924052-29924071 | MS.gene87767:intron | 50.0% | |
| GCTGTCCAAATATGGCAGTG+GGG | + | chr7.1:29923214-29923233 | None:intergenic | 50.0% | |
| TGAAGATACCTTGCGACGCA+AGG | + | chr7.1:29923414-29923433 | None:intergenic | 50.0% | |
| TTGCGACGCAAGGTTGTGAT+GGG | + | chr7.1:29923404-29923423 | None:intergenic | 50.0% | |
| ! | GGTGCAGAAGCATATTGCTG+TGG | + | chr7.1:29923176-29923195 | None:intergenic | 50.0% |
| AATATGGCAGTGGGGTGTGC+CGG | + | chr7.1:29923206-29923225 | None:intergenic | 55.0% | |
| CATCACAACCTTGCGTCGCA+AGG | - | chr7.1:29923403-29923422 | MS.gene87767:intron | 55.0% | |
| CTGCATCAACCAAGACACGG+CGG | + | chr7.1:29923373-29923392 | None:intergenic | 55.0% | |
| CTTGCGACGCAAGGTTGTGA+TGG | + | chr7.1:29923405-29923424 | None:intergenic | 55.0% | |
| GCACACCCCACTGCCATATT+TGG | - | chr7.1:29923206-29923225 | MS.gene87767:CDS | 55.0% | |
| GGATTTGGCGGTCGTGAAGA+AGG | - | chr7.1:29923256-29923275 | MS.gene87767:CDS | 55.0% | |
| TGCGACGCAAGGTTGTGATG+GGG | + | chr7.1:29923403-29923422 | None:intergenic | 55.0% | |
| TTCACGACCGCCAAATCCAC+CGG | + | chr7.1:29923254-29923273 | None:intergenic | 55.0% | |
| ! | CGTGTCTTGGTTGATGCAGC+TGG | - | chr7.1:29923374-29923393 | MS.gene87767:intron | 55.0% |
| ! | TCCATACCCGGTGGATTTGG+CGG | - | chr7.1:29923244-29923263 | MS.gene87767:CDS | 55.0% |
| ! | TGCTCCATACCCGGTGGATT+TGG | - | chr7.1:29923241-29923260 | MS.gene87767:CDS | 55.0% |
| ACCGCCAAATCCACCGGGTA+TGG | + | chr7.1:29923248-29923267 | None:intergenic | 60.0% | |
| CAACCAAGACACGGCGGTCA+CGG | + | chr7.1:29923367-29923386 | None:intergenic | 60.0% | |
| TCACGACCGCCAAATCCACC+GGG | + | chr7.1:29923253-29923272 | None:intergenic | 60.0% | |
| CAAGACACGGCGGTCACGGA+GGG | + | chr7.1:29923363-29923382 | None:intergenic | 65.0% | |
| TGCTTCTGCACCGCCGATGC+CGG | - | chr7.1:29923184-29923203 | MS.gene87767:CDS | 65.0% | |
| CCAAGACACGGCGGTCACGG+AGG | + | chr7.1:29923364-29923383 | None:intergenic | 70.0% | |
| CCTCCGTGACCGCCGTGTCT+TGG | - | chr7.1:29923361-29923380 | MS.gene87767:intron | 70.0% | |
| ! | GCAGTGGGGTGTGCCGGCAT+CGG | + | chr7.1:29923200-29923219 | None:intergenic | 70.0% |
| ! | GTGGGGTGTGCCGGCATCGG+CGG | + | chr7.1:29923197-29923216 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 29923155 | 29924535 | 29923155 | ID=MS.gene87767 |
| chr7.1 | mRNA | 29923155 | 29924535 | 29923155 | ID=MS.gene87767.t1;Parent=MS.gene87767 |
| chr7.1 | exon | 29924266 | 29924535 | 29924266 | ID=MS.gene87767.t1.exon1;Parent=MS.gene87767.t1 |
| chr7.1 | CDS | 29924266 | 29924535 | 29924266 | ID=cds.MS.gene87767.t1;Parent=MS.gene87767.t1 |
| chr7.1 | exon | 29923426 | 29923653 | 29923426 | ID=MS.gene87767.t1.exon2;Parent=MS.gene87767.t1 |
| chr7.1 | CDS | 29923426 | 29923653 | 29923426 | ID=cds.MS.gene87767.t1;Parent=MS.gene87767.t1 |
| chr7.1 | exon | 29923155 | 29923304 | 29923155 | ID=MS.gene87767.t1.exon3;Parent=MS.gene87767.t1 |
| chr7.1 | CDS | 29923155 | 29923304 | 29923155 | ID=cds.MS.gene87767.t1;Parent=MS.gene87767.t1 |
| Gene Sequence |
| Protein sequence |
