Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009719.t1 | AES98921.1 | 90.5 | 168 | 15 | 1 | 1 | 168 | 1 | 167 | 4.30E-81 | 311.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009719.t1 | Q8GWL2 | 47.7 | 155 | 66 | 3 | 14 | 168 | 16 | 155 | 1.2e-28 | 128.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009719.t1 | G7KFJ0 | 90.5 | 168 | 15 | 1 | 1 | 168 | 1 | 167 | 3.1e-81 | 311.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene009719 | MS.gene87041 | PPI |
| MS.gene009719 | MS.gene87768 | PPI |
| MS.gene009719 | MS.gene42848 | PPI |
| MS.gene009719 | MS.gene42099 | PPI |
| MS.gene009719 | MS.gene87040 | PPI |
| MS.gene42098 | MS.gene009719 | PPI |
| MS.gene009719 | MS.gene87046 | PPI |
| MS.gene009719 | MS.gene42097 | PPI |
| MS.gene009719 | MS.gene42091 | PPI |
| MS.gene009719 | MS.gene87767 | PPI |
| MS.gene009719 | MS.gene87769 | PPI |
| MS.gene009719 | MS.gene87038 | PPI |
| MS.gene87767 | MS.gene009719 | PPI |
| MS.gene009719 | MS.gene42100 | PPI |
| MS.gene009719 | MS.gene87762 | PPI |
| MS.gene009719 | MS.gene42103 | PPI |
| MS.gene009719 | MS.gene87765 | PPI |
| MS.gene87043 | MS.gene009719 | PPI |
| MS.gene009719 | MS.gene42096 | PPI |
| MS.gene009719 | MS.gene87043 | PPI |
| MS.gene009719 | MS.gene42098 | PPI |
| MS.gene009719 | MS.gene87039 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009719.t1 | MTR_5g074550 | 90.476 | 168 | 15 | 1 | 1 | 168 | 1 | 167 | 7.58e-111 | 317 |
| MS.gene009719.t1 | MTR_5g074560 | 73.373 | 169 | 33 | 3 | 1 | 168 | 3 | 160 | 9.26e-82 | 243 |
| MS.gene009719.t1 | MTR_7g072120 | 31.707 | 164 | 98 | 4 | 17 | 175 | 33 | 187 | 2.02e-17 | 78.6 |
| MS.gene009719.t1 | MTR_7g072170 | 33.566 | 143 | 81 | 4 | 17 | 154 | 33 | 166 | 3.39e-17 | 78.2 |
| MS.gene009719.t1 | MTR_7g072270 | 31.210 | 157 | 93 | 5 | 17 | 168 | 32 | 178 | 2.74e-16 | 75.5 |
| MS.gene009719.t1 | MTR_7g072270 | 33.566 | 143 | 80 | 5 | 17 | 154 | 32 | 164 | 3.25e-16 | 74.3 |
| MS.gene009719.t1 | MTR_7g072140 | 29.936 | 157 | 96 | 4 | 17 | 168 | 33 | 180 | 2.59e-15 | 72.8 |
| MS.gene009719.t1 | MTR_5g074510 | 83.784 | 37 | 6 | 0 | 173 | 209 | 190 | 226 | 1.62e-12 | 67.4 |
| MS.gene009719.t1 | MTR_7g072250 | 31.618 | 136 | 72 | 5 | 34 | 164 | 83 | 202 | 3.54e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene009719.t1 | AT2G30270 | 42.581 | 155 | 74 | 2 | 14 | 168 | 16 | 155 | 1.03e-30 | 112 |
Find 60 sgRNAs with CRISPR-Local
Find 377 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCAAAGCCTTGAATTTAT+TGG | 0.138457 | 5.3:-58973670 | MS.gene009719:CDS |
| GCTTTCTCAGACAAACTTTC+TGG | 0.199557 | 5.3:+58973763 | None:intergenic |
| TACCCCGACTGACGTATATT+TGG | 0.230558 | 5.3:+58976926 | None:intergenic |
| ACATTTCCTTAACAGCTAAA+AGG | 0.243555 | 5.3:+58973632 | None:intergenic |
| GCTTGCGACTTAAAAGTAAT+TGG | 0.281487 | 5.3:-58978456 | MS.gene009719:CDS |
| CTTTGGAGACGAAGAGGAAT+TGG | 0.284571 | 5.3:+58979875 | None:intergenic |
| TGGGACTTGGAAATGTTATA+AGG | 0.293104 | 5.3:-58978595 | MS.gene009719:CDS |
| GGGAAGTGGTGATGAGAATA+AGG | 0.296657 | 5.3:-58978574 | MS.gene009719:CDS |
| GGAAATGGAAACTTCAGATT+TGG | 0.309392 | 5.3:-58980039 | None:intergenic |
| ACAAGTATATTAAAGTGATT+TGG | 0.309982 | 5.3:+58973694 | None:intergenic |
| AACTTTCTGGCGTGAGCTTT+AGG | 0.311592 | 5.3:+58973776 | None:intergenic |
| AGCAAGAGTTTGGTATCCTT+TGG | 0.337774 | 5.3:+58979858 | None:intergenic |
| CATTTCTAAAGATGGTGATT+TGG | 0.375415 | 5.3:-58978409 | MS.gene009719:CDS |
| ATTGGAATCAAGCAAGAGTT+TGG | 0.382566 | 5.3:+58979848 | None:intergenic |
| TTTGGTTAAGCTTGTACATC+AGG | 0.391771 | 5.3:+58976944 | None:intergenic |
| AATTACCCGAGTTGAGTTAG+AGG | 0.392515 | 5.3:-58978517 | MS.gene009719:CDS |
| AGACGAAGAGGAATTGGGAT+TGG | 0.410407 | 5.3:+58979881 | None:intergenic |
| GACGAAGAGGAATTGGGATT+GGG | 0.428563 | 5.3:+58979882 | None:intergenic |
| CATTTCCTTAACAGCTAAAA+GGG | 0.432204 | 5.3:+58973633 | None:intergenic |
| TGCTGCATGATCTCTTGAAA+GGG | 0.441228 | 5.3:+58978430 | None:intergenic |
| TTTGGAGACGAAGAGGAATT+GGG | 0.442315 | 5.3:+58979876 | None:intergenic |
| ATTGCAAACCAATAAATTCA+AGG | 0.444360 | 5.3:+58973662 | None:intergenic |
| AATTGGGATTGGGTGGTTGA+CGG | 0.447331 | 5.3:+58979892 | None:intergenic |
| ATGAAAGGATTTCAAAATAG+TGG | 0.454866 | 5.3:-58973597 | None:intergenic |
| TTAGCGTTTGCTGATGCATC+GGG | 0.457884 | 5.3:-58979936 | MS.gene009719:CDS |
| TTCTAAAGATGGTGATTTGG+TGG | 0.461988 | 5.3:-58978406 | MS.gene009719:CDS |
| GAAGAACAGAGGATTATCAT+TGG | 0.463772 | 5.3:+58979830 | None:intergenic |
| GGGACTTGGAAATGTTATAA+GGG | 0.475852 | 5.3:-58978594 | MS.gene009719:CDS |
| TTGGAACCGAAAAGATCGAT+TGG | 0.478169 | 5.3:+58979987 | None:intergenic |
| GATTGGGATGTGTTGATCTT+CGG | 0.483082 | 5.3:+58980004 | None:intergenic |
| ATCGGGTAACATAGTCTTCA+AGG | 0.483954 | 5.3:-58979919 | MS.gene009719:CDS |
| TAACCAAATATACGTCAGTC+GGG | 0.485446 | 5.3:-58976929 | MS.gene009719:CDS |
| TGGAACCGAAAAGATCGATT+GGG | 0.488185 | 5.3:+58979988 | None:intergenic |
| ATGCTGCATGATCTCTTGAA+AGG | 0.498992 | 5.3:+58978429 | None:intergenic |
| TAAGATTCCACGTGGAACTC+CGG | 0.515660 | 5.3:+58979956 | None:intergenic |
| AGATGGTGATTTGGTGGCAC+AGG | 0.523496 | 5.3:-58978400 | MS.gene009719:intron |
| CTTAGCGTTTGCTGATGCAT+CGG | 0.528232 | 5.3:-58979937 | MS.gene009719:CDS |
| TGGAAATGTTATAAGGGAAG+TGG | 0.531416 | 5.3:-58978588 | MS.gene009719:CDS |
| TCATGCAGCATTTCTAAAGA+TGG | 0.534516 | 5.3:-58978417 | MS.gene009719:CDS |
| TTGAATTTATTGGTTTGCAA+TGG | 0.535473 | 5.3:-58973660 | MS.gene009719:CDS |
| CAATTCCTCTTCGTCTCCAA+AGG | 0.553127 | 5.3:-58979874 | MS.gene009719:CDS |
| GAAGAGGAATTGGGATTGGG+TGG | 0.563577 | 5.3:+58979885 | None:intergenic |
| GTTAGAAGAGATGTACCAGC+AGG | 0.570441 | 5.3:-58973725 | MS.gene009719:CDS |
| TTAACCAAATATACGTCAGT+CGG | 0.572848 | 5.3:-58976930 | MS.gene009719:CDS |
| AAAACACCTCTAACTCAACT+CGG | 0.575143 | 5.3:+58978511 | None:intergenic |
| CATCTCTTCTAACTCATCCA+TGG | 0.581149 | 5.3:+58973735 | None:intergenic |
| GTTCTGTCAGCTGTGTCTGT+TGG | 0.595569 | 5.3:-58976423 | MS.gene009719:intron |
| AGCTTGTGTTAGAAGTGAAG+AGG | 0.604864 | 5.3:-58978551 | MS.gene009719:CDS |
| GTCTGAGAAAGCTGTAGCCA+TGG | 0.605522 | 5.3:-58973752 | MS.gene009719:CDS |
| AAACACCTCTAACTCAACTC+GGG | 0.609005 | 5.3:+58978512 | None:intergenic |
| GGTATCCTTTGGAGACGAAG+AGG | 0.609702 | 5.3:+58979869 | None:intergenic |
| GCTGCATGATCTCTTGAAAG+GGG | 0.632578 | 5.3:+58978431 | None:intergenic |
| AAGAGAGACTAACATGATGA+CGG | 0.636080 | 5.3:+58979802 | None:intergenic |
| GATTTGGATTGTATACCTGC+TGG | 0.638920 | 5.3:+58973710 | None:intergenic |
| ACTTCAGATTTGGAGTACAC+AGG | 0.646841 | 5.3:-58980029 | MS.gene009719:CDS |
| AACCAAATATACGTCAGTCG+GGG | 0.696791 | 5.3:-58976928 | MS.gene009719:intron |
| AGAGACTAACATGATGACGG+TGG | 0.699942 | 5.3:+58979805 | None:intergenic |
| AAACAAACCGGAGTTCCACG+TGG | 0.713755 | 5.3:-58979963 | MS.gene009719:CDS |
| TGACGGTGGATGAAGAACAG+AGG | 0.729871 | 5.3:+58979819 | None:intergenic |
| GCAAACGCTAAGATTCCACG+TGG | 0.780342 | 5.3:+58979948 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTATTATAAAAAAAAAAA+AGG | - | chr5.3:58976976-58976995 | MS.gene009719:intron | 0.0% |
| !! | AAATGATTTCTATTCATTAT+TGG | - | chr5.3:58978656-58978675 | MS.gene009719:intron | 15.0% |
| !! | AACAATTATATTGAGAAAAT+AGG | - | chr5.3:58979241-58979260 | MS.gene009719:intron | 15.0% |
| !! | ATGTTTACAATATAGAATAA+AGG | + | chr5.3:58979342-58979361 | None:intergenic | 15.0% |
| !! | GATTATATTGAATAAACTTA+AGG | + | chr5.3:58979047-58979066 | None:intergenic | 15.0% |
| !! | TATATAACATACTTATAGAA+CGG | + | chr5.3:58976085-58976104 | None:intergenic | 15.0% |
| !! | TGTTTACAATATAGAATAAA+GGG | + | chr5.3:58979341-58979360 | None:intergenic | 15.0% |
| !! | TTCTTCTTTATTATTCAATT+TGG | - | chr5.3:58973865-58973884 | MS.gene009719:intron | 15.0% |
| !!! | AAAATTTTGATTTTCAAATG+TGG | + | chr5.3:58977075-58977094 | None:intergenic | 15.0% |
| !!! | AAATTTTGATTTTCAAATGT+GGG | + | chr5.3:58977074-58977093 | None:intergenic | 15.0% |
| !!! | AATTTAAACAGTGATTTTAT+TGG | + | chr5.3:58976387-58976406 | None:intergenic | 15.0% |
| !!! | AGCTTTATATATTCAAATAA+GGG | + | chr5.3:58978239-58978258 | None:intergenic | 15.0% |
| !!! | ATAAATACTGATTTAGTTAT+AGG | - | chr5.3:58975359-58975378 | MS.gene009719:intron | 15.0% |
| !!! | TTTTTTTTTTTTGGTAGAAT+GGG | - | chr5.3:58975021-58975040 | MS.gene009719:intron | 15.0% |
| !!! | TTTTTTTTTTTTTGGTAGAA+TGG | - | chr5.3:58975020-58975039 | MS.gene009719:intron | 15.0% |
| !! | AACATAAAAACAAGTTCTTA+TGG | + | chr5.3:58974369-58974388 | None:intergenic | 20.0% |
| !! | AATGAAATGTAAATAGTTAG+AGG | + | chr5.3:58979069-58979088 | None:intergenic | 20.0% |
| !! | AATTAAGATAAATGACTCAT+TGG | - | chr5.3:58975893-58975912 | MS.gene009719:intron | 20.0% |
| !! | AATTGTACATTCTATAATGT+TGG | + | chr5.3:58977721-58977740 | None:intergenic | 20.0% |
| !! | ACAAGTATATTAAAGTGATT+TGG | + | chr5.3:58979944-58979963 | None:intergenic | 20.0% |
| !! | ACAAGTTAAGAAGTTAAAAA+TGG | - | chr5.3:58974118-58974137 | MS.gene009719:intron | 20.0% |
| !! | ACATCTAATGTAACAATATA+CGG | + | chr5.3:58975940-58975959 | None:intergenic | 20.0% |
| !! | ATTCATTAACAAAATAAGCA+CGG | + | chr5.3:58978366-58978385 | None:intergenic | 20.0% |
| !! | GTTCTTAATTTATTCTAAGT+GGG | + | chr5.3:58974468-58974487 | None:intergenic | 20.0% |
| !! | GTTTACAATATAGAATAAAG+GGG | + | chr5.3:58979340-58979359 | None:intergenic | 20.0% |
| !! | TACTATTCATTCTAATTTCT+GGG | + | chr5.3:58979219-58979238 | None:intergenic | 20.0% |
| !! | TCTATATTGTAAACATTGTT+AGG | - | chr5.3:58979346-58979365 | MS.gene009719:intron | 20.0% |
| !! | TGACAAATAATTAAGTCTAT+CGG | - | chr5.3:58977302-58977321 | MS.gene009719:intron | 20.0% |
| !! | TGTTCTTAATTTATTCTAAG+TGG | + | chr5.3:58974469-58974488 | None:intergenic | 20.0% |
| !! | TTAAATCAAAACTGCAAATA+CGG | + | chr5.3:58974904-58974923 | None:intergenic | 20.0% |
| !! | TTACTATTCATTCTAATTTC+TGG | + | chr5.3:58979220-58979239 | None:intergenic | 20.0% |
| !! | TTCATTGTAAATTCAAGATT+TGG | - | chr5.3:58979004-58979023 | MS.gene009719:intron | 20.0% |
| !! | TTGATTATGCATGTATAAAT+AGG | + | chr5.3:58979294-58979313 | None:intergenic | 20.0% |
| !! | TTTGTGAATACTTATAGAAA+CGG | - | chr5.3:58976140-58976159 | MS.gene009719:intron | 20.0% |
| !!! | CAATCATTATATTTTTGCAT+TGG | - | chr5.3:58974487-58974506 | MS.gene009719:intron | 20.0% |
| !!! | CAGCTTTATATATTCAAATA+AGG | + | chr5.3:58978240-58978259 | None:intergenic | 20.0% |
| !!! | CTGTTTGTAATATTTTTGAA+TGG | - | chr5.3:58976785-58976804 | MS.gene009719:intron | 20.0% |
| !!! | GATGTTATTTTGATGAATTA+TGG | - | chr5.3:58975642-58975661 | MS.gene009719:intron | 20.0% |
| !!! | GGATTGTAAATGTTATTTTT+AGG | - | chr5.3:58975663-58975682 | MS.gene009719:intron | 20.0% |
| !!! | TGATTTAGATGTTATTTTGA+TGG | - | chr5.3:58975686-58975705 | MS.gene009719:intron | 20.0% |
| !!! | TTAAGGAAATGTTTTATGTA+TGG | - | chr5.3:58980014-58980033 | MS.gene009719:CDS | 20.0% |
| !!! | TTAGATTTTTGTAAAAGACA+TGG | - | chr5.3:58975744-58975763 | MS.gene009719:intron | 20.0% |
| !!! | TTTTGAGTAAACAATCATTT+TGG | + | chr5.3:58974965-58974984 | None:intergenic | 20.0% |
| ! | AAATTAAACGCTTATAGCAT+AGG | + | chr5.3:58976326-58976345 | None:intergenic | 25.0% |
| ! | AACATATCATAGAACAACAT+CGG | + | chr5.3:58974339-58974358 | None:intergenic | 25.0% |
| ! | AACTTAAGGAAACTACTTAT+TGG | + | chr5.3:58979033-58979052 | None:intergenic | 25.0% |
| ! | AATCAAAGCCTTGAATTTAT+TGG | - | chr5.3:58979965-58979984 | MS.gene009719:CDS | 25.0% |
| ! | ACTGTAAGATAAAATCAATG+TGG | + | chr5.3:58978628-58978647 | None:intergenic | 25.0% |
| ! | ATATACATAATGTAATGCAC+TGG | + | chr5.3:58979596-58979615 | None:intergenic | 25.0% |
| ! | ATCTGTATTTGTATATACAG+TGG | - | chr5.3:58976035-58976054 | MS.gene009719:intron | 25.0% |
| ! | ATTAAAACATGAATCACAAG+TGG | + | chr5.3:58979739-58979758 | None:intergenic | 25.0% |
| ! | ATTGCAAACCAATAAATTCA+AGG | + | chr5.3:58979976-58979995 | None:intergenic | 25.0% |
| ! | GAATGTTACAATACAGAAAA+AGG | + | chr5.3:58979626-58979645 | None:intergenic | 25.0% |
| ! | GTCATAAATACATGGATTTA+CGG | - | chr5.3:58978749-58978768 | MS.gene009719:intron | 25.0% |
| ! | TAAAACAAAAACGTTAGTAG+AGG | + | chr5.3:58979444-58979463 | None:intergenic | 25.0% |
| ! | TAATACTTCTTGAAAGCTTA+TGG | - | chr5.3:58979097-58979116 | MS.gene009719:intron | 25.0% |
| ! | TAGTGCTCATTTATATAACT+AGG | - | chr5.3:58977393-58977412 | MS.gene009719:intron | 25.0% |
| ! | TATACATAATGTAATGCACT+GGG | + | chr5.3:58979595-58979614 | None:intergenic | 25.0% |
| ! | TATGAGAAAAGCTTATAGTT+TGG | - | chr5.3:58976221-58976240 | MS.gene009719:intron | 25.0% |
| ! | TATGCTATTAGTGATATGTT+AGG | - | chr5.3:58978834-58978853 | MS.gene009719:intron | 25.0% |
| ! | TGAGTACAATTATGTATAGA+TGG | - | chr5.3:58976578-58976597 | MS.gene009719:intron | 25.0% |
| ! | TGATAAAAAGGAAATGCAAA+AGG | - | chr5.3:58977633-58977652 | MS.gene009719:intron | 25.0% |
| ! | TGATATAGACACTTGAAATA+AGG | - | chr5.3:58979397-58979416 | MS.gene009719:intron | 25.0% |
| ! | TTATCCAAACATTATCATAG+AGG | - | chr5.3:58976352-58976371 | MS.gene009719:intron | 25.0% |
| ! | TTCGTATACATAATATTCTC+TGG | + | chr5.3:58978727-58978746 | None:intergenic | 25.0% |
| ! | TTTAAAAATGTCAGCAACAA+TGG | + | chr5.3:58975789-58975808 | None:intergenic | 25.0% |
| ! | TTTCATGAACATAATTGTAG+AGG | - | chr5.3:58979533-58979552 | MS.gene009719:intron | 25.0% |
| !! | AAAACTCTTGTGTTTTACAT+GGG | + | chr5.3:58978213-58978232 | None:intergenic | 25.0% |
| !! | AAGTCTTCAAAATTTAAGAC+CGG | + | chr5.3:58974308-58974327 | None:intergenic | 25.0% |
| !! | AATTTTAAATCATCTCCTCA+AGG | + | chr5.3:58974164-58974183 | None:intergenic | 25.0% |
| !! | AGTAATAAACAGTCTTATAG+CGG | + | chr5.3:58973927-58973946 | None:intergenic | 25.0% |
| !! | ATGATTGCTTTGGATTATTT+AGG | - | chr5.3:58977955-58977974 | MS.gene009719:intron | 25.0% |
| !! | ATGTGATGATGAACAAAAAA+TGG | + | chr5.3:58977455-58977474 | None:intergenic | 25.0% |
| !! | ATTTGGTAACAAACTTATTC+AGG | + | chr5.3:58979711-58979730 | None:intergenic | 25.0% |
| !! | CAGAAAATAAATTTTGCACA+TGG | + | chr5.3:58978971-58978990 | None:intergenic | 25.0% |
| !! | GCATTTCCTTTTTATCATAT+GGG | + | chr5.3:58977630-58977649 | None:intergenic | 25.0% |
| !! | TAAAACTCTTGTGTTTTACA+TGG | + | chr5.3:58978214-58978233 | None:intergenic | 25.0% |
| !! | TGATTGCTTTGGATTATTTA+GGG | - | chr5.3:58977956-58977975 | MS.gene009719:intron | 25.0% |
| !! | TGCATTTCCTTTTTATCATA+TGG | + | chr5.3:58977631-58977650 | None:intergenic | 25.0% |
| !! | TGTGATGATGAACAAAAAAT+GGG | + | chr5.3:58977454-58977473 | None:intergenic | 25.0% |
| !! | TGTTTTATGTATGGTATGAA+AGG | - | chr5.3:58980023-58980042 | MS.gene009719:CDS | 25.0% |
| !! | TTTATGTTCTTCAAGCATTT+TGG | + | chr5.3:58974564-58974583 | None:intergenic | 25.0% |
| !! | TTTGAAATGAACTGTTATCT+AGG | + | chr5.3:58975325-58975344 | None:intergenic | 25.0% |
| !!! | AATACTGATTTAGTTATAGG+TGG | - | chr5.3:58975362-58975381 | MS.gene009719:intron | 25.0% |
| !!! | ATCCCTTTTAAAAAAGAGAA+AGG | - | chr5.3:58974260-58974279 | MS.gene009719:intron | 25.0% |
| !!! | ATGCAATTTACTTTTTCGAA+TGG | - | chr5.3:58975716-58975735 | MS.gene009719:intron | 25.0% |
| !!! | CTTGATAGTTGATAAGTAAA+AGG | - | chr5.3:58975822-58975841 | MS.gene009719:intron | 25.0% |
| !!! | TCCCTTTCTCTTTTTTAAAA+GGG | + | chr5.3:58974265-58974284 | None:intergenic | 25.0% |
| !!! | TCCCTTTTAAAAAAGAGAAA+GGG | - | chr5.3:58974261-58974280 | MS.gene009719:intron | 25.0% |
| !!! | TGATTCATGTTTTAATCCTT+AGG | - | chr5.3:58979743-58979762 | MS.gene009719:intron | 25.0% |
| !!! | TGTATGCGTGTATTTTTTTT+TGG | - | chr5.3:58975414-58975433 | MS.gene009719:intron | 25.0% |
| !!! | TGTTAATTGGTATTGGTATT+TGG | + | chr5.3:58978871-58978890 | None:intergenic | 25.0% |
| !!! | TTGAATTTATTGGTTTGCAA+TGG | - | chr5.3:58979975-58979994 | MS.gene009719:CDS | 25.0% |
| !!! | TTTTCCTCTATGATAATGTT+TGG | + | chr5.3:58976359-58976378 | None:intergenic | 25.0% |
| !!! | TTTTTGGTCAAATAGTCTAT+TGG | - | chr5.3:58975430-58975449 | MS.gene009719:intron | 25.0% |
| AAAGACATGGATGAAAAATG+AGG | - | chr5.3:58975757-58975776 | MS.gene009719:intron | 30.0% | |
| AAAGTAAGACATGATTGCTT+TGG | - | chr5.3:58977945-58977964 | MS.gene009719:intron | 30.0% | |
| AAGAAATTTGTGCGAGATAT+TGG | - | chr5.3:58974771-58974790 | MS.gene009719:intron | 30.0% | |
| AAGAAGAGAGGAATCAAATT+TGG | - | chr5.3:58976521-58976540 | MS.gene009719:intron | 30.0% | |
| AAGTGACAAATACACACAAT+CGG | + | chr5.3:58976859-58976878 | None:intergenic | 30.0% | |
| AATCAAGCAATTAACTCGAA+TGG | - | chr5.3:58973997-58974016 | MS.gene009719:intron | 30.0% | |
| ACAAGGAAATTTGATGTGTT+GGG | + | chr5.3:58975513-58975532 | None:intergenic | 30.0% | |
| ACAGAACTTTAAGTGGAAAA+AGG | + | chr5.3:58977199-58977218 | None:intergenic | 30.0% | |
| ACATTCATTATCTACGTGTA+CGG | - | chr5.3:58979640-58979659 | MS.gene009719:intron | 30.0% | |
| ACATTTCCTTAACAGCTAAA+AGG | + | chr5.3:58980006-58980025 | None:intergenic | 30.0% | |
| ACCATATGAGTTGTACTTAT+GGG | - | chr5.3:58975537-58975556 | MS.gene009719:intron | 30.0% | |
| AGAAATTTGTGCGAGATATT+GGG | - | chr5.3:58974772-58974791 | MS.gene009719:intron | 30.0% | |
| AGAATAAAGGGGATTTAGTT+AGG | + | chr5.3:58979329-58979348 | None:intergenic | 30.0% | |
| ATTAGCTATGTCAAACTGTT+TGG | + | chr5.3:58976279-58976298 | None:intergenic | 30.0% | |
| CAATTTAGGAACATCAAACT+TGG | - | chr5.3:58977578-58977597 | MS.gene009719:intron | 30.0% | |
| CATTTCCTTAACAGCTAAAA+GGG | + | chr5.3:58980005-58980024 | None:intergenic | 30.0% | |
| CTATATAGCTTGAGCAATTT+AGG | - | chr5.3:58977564-58977583 | MS.gene009719:intron | 30.0% | |
| GAATAAAGGGGATTTAGTTA+GGG | + | chr5.3:58979328-58979347 | None:intergenic | 30.0% | |
| GCTAAACTTTACTTAACTTC+CGG | - | chr5.3:58974077-58974096 | MS.gene009719:intron | 30.0% | |
| GTAGATCAAACTTAAGATTG+AGG | + | chr5.3:58974680-58974699 | None:intergenic | 30.0% | |
| GTTACATTAGATGTAGATTG+TGG | - | chr5.3:58975946-58975965 | MS.gene009719:intron | 30.0% | |
| TAAAGCAACAATAACTTCCA+TGG | + | chr5.3:58978407-58978426 | None:intergenic | 30.0% | |
| TACAAGGAAATTTGATGTGT+TGG | + | chr5.3:58975514-58975533 | None:intergenic | 30.0% | |
| TACCATATGAGTTGTACTTA+TGG | - | chr5.3:58975536-58975555 | MS.gene009719:intron | 30.0% | |
| TACGAAGAGTCATAAATACA+TGG | - | chr5.3:58978741-58978760 | MS.gene009719:intron | 30.0% | |
| TCGCACAAATTTCTTAAATG+AGG | + | chr5.3:58974766-58974785 | None:intergenic | 30.0% | |
| TCTGCACTGAAATATGATTA+TGG | + | chr5.3:58977516-58977535 | None:intergenic | 30.0% | |
| TGAAACTTTACTTTCTTCTC+TGG | + | chr5.3:58979518-58979537 | None:intergenic | 30.0% | |
| TGTATCAAATTGTGCAACAA+TGG | + | chr5.3:58978561-58978580 | None:intergenic | 30.0% | |
| TGTATTTGTATATACAGTGG+AGG | - | chr5.3:58976038-58976057 | MS.gene009719:intron | 30.0% | |
| TGTTCTATGATATGTTCTTG+AGG | - | chr5.3:58974343-58974362 | MS.gene009719:intron | 30.0% | |
| TTAACCAAATATACGTCAGT+CGG | - | chr5.3:58976705-58976724 | MS.gene009719:intron | 30.0% | |
| TTCACTGTTGAATGTTGAAT+AGG | - | chr5.3:58978156-58978175 | MS.gene009719:intron | 30.0% | |
| ! | AAGTGCATTGTACATTTTGT+TGG | + | chr5.3:58977750-58977769 | None:intergenic | 30.0% |
| ! | AATCAATTTTTGTGATCAGC+TGG | + | chr5.3:58976645-58976664 | None:intergenic | 30.0% |
| ! | AGAAATAACAAGTGTTGTCA+TGG | + | chr5.3:58978304-58978323 | None:intergenic | 30.0% |
| ! | AGGGATTTGATTTCTTGTAT+TGG | - | chr5.3:58977975-58977994 | MS.gene009719:intron | 30.0% |
| ! | ATTTGAGGCTATAATAGAAG+AGG | - | chr5.3:58977801-58977820 | MS.gene009719:intron | 30.0% |
| ! | CATTTCTAAAGATGGTGATT+TGG | - | chr5.3:58975226-58975245 | MS.gene009719:intron | 30.0% |
| ! | CTATAAGCGTTTAATTTAGC+TGG | - | chr5.3:58976329-58976348 | MS.gene009719:intron | 30.0% |
| ! | GCTTGTTTGTTAATTGGTAT+TGG | + | chr5.3:58978878-58978897 | None:intergenic | 30.0% |
| ! | GGTAATAAAGCTGTGATTTT+CGG | - | chr5.3:58977131-58977150 | MS.gene009719:intron | 30.0% |
| ! | GTATCTAAAACGATTGTAGA+TGG | - | chr5.3:58979569-58979588 | MS.gene009719:intron | 30.0% |
| ! | GTTTTTATGTTCTATCCCAT+TGG | - | chr5.3:58974378-58974397 | MS.gene009719:intron | 30.0% |
| ! | TTTTGTTCTAGCATTGTAGA+TGG | - | chr5.3:58974584-58974603 | MS.gene009719:intron | 30.0% |
| !! | AATCATAAGTTTTGTCCTTG+AGG | - | chr5.3:58974146-58974165 | MS.gene009719:intron | 30.0% |
| !! | ACAACACTTGTTATTTCTGT+TGG | - | chr5.3:58978306-58978325 | MS.gene009719:intron | 30.0% |
| !! | ACATCAAACTTGGTGTTAAT+AGG | - | chr5.3:58977588-58977607 | MS.gene009719:intron | 30.0% |
| !! | ACATTAAGTGTTGGTAAGTA+GGG | - | chr5.3:58975465-58975484 | MS.gene009719:intron | 30.0% |
| !! | ATCCTTAGGTTGATTGTATT+AGG | - | chr5.3:58979757-58979776 | MS.gene009719:intron | 30.0% |
| !! | ATTCATTATTGGTGTTGAGA+AGG | - | chr5.3:58978667-58978686 | MS.gene009719:intron | 30.0% |
| !! | CAACACTTGTTATTTCTGTT+GGG | - | chr5.3:58978307-58978326 | MS.gene009719:intron | 30.0% |
| !! | CATCAAACTTGGTGTTAATA+GGG | - | chr5.3:58977589-58977608 | MS.gene009719:intron | 30.0% |
| !! | CGTATTTTAAATAGGCAACA+AGG | - | chr5.3:58975567-58975586 | MS.gene009719:intron | 30.0% |
| !! | GCTATCTGCGTATTTTAAAT+AGG | - | chr5.3:58975559-58975578 | MS.gene009719:intron | 30.0% |
| !!! | GTCCCTTTCTCTTTTTTAAA+AGG | + | chr5.3:58974266-58974285 | None:intergenic | 30.0% |
| AAAACACCTCTAACTCAACT+CGG | + | chr5.3:58975127-58975146 | None:intergenic | 35.0% | |
| AAATCTCTCTCTCCAAAGAA+GGG | + | chr5.3:58978510-58978529 | None:intergenic | 35.0% | |
| AAATGATCGCAGTGAAAGTA+GGG | + | chr5.3:58978900-58978919 | None:intergenic | 35.0% | |
| AACAAAAACGTTAGTAGAGG+AGG | + | chr5.3:58979441-58979460 | None:intergenic | 35.0% | |
| AAGAGAAAGAGACCTAATAC+AGG | + | chr5.3:58978115-58978134 | None:intergenic | 35.0% | |
| AAGAGAGACTAACATGATGA+CGG | + | chr5.3:58973836-58973855 | None:intergenic | 35.0% | |
| AATCACAAGTGGCACAAATT+TGG | + | chr5.3:58979728-58979747 | None:intergenic | 35.0% | |
| ACCATCAATGTCCTTAAATG+CGG | + | chr5.3:58978537-58978556 | None:intergenic | 35.0% | |
| ACTAGTCATTTCCATTGAAC+AGG | - | chr5.3:58977251-58977270 | MS.gene009719:intron | 35.0% | |
| ACTTACCAACACTTAATGTG+TGG | + | chr5.3:58975464-58975483 | None:intergenic | 35.0% | |
| AGACTAAGCTCAACAAATGA+AGG | + | chr5.3:58977431-58977450 | None:intergenic | 35.0% | |
| AGAGATAATGCAGTGAAGAA+TGG | - | chr5.3:58977001-58977020 | MS.gene009719:intron | 35.0% | |
| AGCATAAAAGTTCGCAATCA+AGG | + | chr5.3:58979684-58979703 | None:intergenic | 35.0% | |
| AGCCTAATACAATCAACCTA+AGG | + | chr5.3:58979762-58979781 | None:intergenic | 35.0% | |
| AGGTCTCTAAACAGTAACTA+AGG | + | chr5.3:58977479-58977498 | None:intergenic | 35.0% | |
| AGTCAAGATAGACATCTCAA+AGG | - | chr5.3:58977833-58977852 | MS.gene009719:intron | 35.0% | |
| AGTTAGAACATGAAGAAGAG+AGG | - | chr5.3:58976509-58976528 | MS.gene009719:intron | 35.0% | |
| ATCAGAGAGAAAATTGGTTG+GGG | - | chr5.3:58974624-58974643 | MS.gene009719:intron | 35.0% | |
| ATCCAACTCAGGTTATGATT+AGG | + | chr5.3:58974036-58974055 | None:intergenic | 35.0% | |
| ATCGGAAATGATAAACTTGC+TGG | - | chr5.3:58977320-58977339 | MS.gene009719:intron | 35.0% | |
| ATGAGCACTACACAAGAAAA+TGG | + | chr5.3:58977383-58977402 | None:intergenic | 35.0% | |
| ATGAGTGAACTTAATCCACA+TGG | - | chr5.3:58978452-58978471 | MS.gene009719:CDS | 35.0% | |
| ATGGATTCCATGTTGAAGAA+CGG | - | chr5.3:58974412-58974431 | MS.gene009719:intron | 35.0% | |
| ATGTTGCAACCATAAACCTA+AGG | + | chr5.3:58976937-58976956 | None:intergenic | 35.0% | |
| ATTCTAGCAAACTTTCAACC+AGG | + | chr5.3:58977277-58977296 | None:intergenic | 35.0% | |
| ATTGGAATCAAGCAAGAGTT+TGG | + | chr5.3:58973790-58973809 | None:intergenic | 35.0% | |
| CAACTCATATGGTAACTACA+AGG | + | chr5.3:58975530-58975549 | None:intergenic | 35.0% | |
| CAAGGAAATTTGATGTGTTG+GGG | + | chr5.3:58975512-58975531 | None:intergenic | 35.0% | |
| CATCAGAGAGAAAATTGGTT+GGG | - | chr5.3:58974623-58974642 | MS.gene009719:intron | 35.0% | |
| CATGGATGAAAAATGAGGTT+AGG | - | chr5.3:58975762-58975781 | MS.gene009719:intron | 35.0% | |
| CATTCATTATCTACGTGTAC+GGG | - | chr5.3:58979641-58979660 | MS.gene009719:intron | 35.0% | |
| CATTGTAGATGGTACCTATT+AGG | - | chr5.3:58974595-58974614 | MS.gene009719:intron | 35.0% | |
| CTATTAGTGATATGTTAGGC+TGG | - | chr5.3:58978838-58978857 | MS.gene009719:intron | 35.0% | |
| CTCATACTACCTTAGGTTTA+TGG | - | chr5.3:58976925-58976944 | MS.gene009719:intron | 35.0% | |
| CTTACCAACACTTAATGTGT+GGG | + | chr5.3:58975463-58975482 | None:intergenic | 35.0% | |
| GAAATGATCGAGACTTTGTT+CGG | + | chr5.3:58973964-58973983 | None:intergenic | 35.0% | |
| GAACAAAGTCTCGATCATTT+CGG | - | chr5.3:58973963-58973982 | MS.gene009719:intron | 35.0% | |
| GAAGAACAGAGGATTATCAT+TGG | + | chr5.3:58973808-58973827 | None:intergenic | 35.0% | |
| GATAAATGTCCATTAGAGCA+GGG | + | chr5.3:58978344-58978363 | None:intergenic | 35.0% | |
| GCAATTAACTCGAATGGTTA+AGG | - | chr5.3:58974003-58974022 | MS.gene009719:intron | 35.0% | |
| GCTTGCGACTTAAAAGTAAT+TGG | - | chr5.3:58975179-58975198 | MS.gene009719:intron | 35.0% | |
| GGGACTTGGAAATGTTATAA+GGG | - | chr5.3:58975041-58975060 | MS.gene009719:intron | 35.0% | |
| GTCTTCGTATTTCCTGTATT+AGG | - | chr5.3:58978100-58978119 | MS.gene009719:intron | 35.0% | |
| TAAATCTCTCTCTCCAAAGA+AGG | + | chr5.3:58978511-58978530 | None:intergenic | 35.0% | |
| TAACCAAATATACGTCAGTC+GGG | - | chr5.3:58976706-58976725 | MS.gene009719:intron | 35.0% | |
| TAGGTTTATGGTTGCAACAT+TGG | - | chr5.3:58976937-58976956 | MS.gene009719:CDS | 35.0% | |
| TATAACAGAGTTAGACCATC+CGG | - | chr5.3:58974286-58974305 | MS.gene009719:intron | 35.0% | |
| TGCATTGGAGTAAAACTACA+TGG | - | chr5.3:58974502-58974521 | MS.gene009719:intron | 35.0% | |
| TGGAAATGTTATAAGGGAAG+TGG | - | chr5.3:58975047-58975066 | MS.gene009719:intron | 35.0% | |
| TGGCTACCCATATGATAAAA+AGG | - | chr5.3:58977621-58977640 | MS.gene009719:intron | 35.0% | |
| TGGGACTTGGAAATGTTATA+AGG | - | chr5.3:58975040-58975059 | MS.gene009719:intron | 35.0% | |
| TGTTAATAGGGTTCCATGAA+TGG | - | chr5.3:58977601-58977620 | MS.gene009719:intron | 35.0% | |
| TTCGGTTCCAAAAAACAAAC+CGG | - | chr5.3:58973660-58973679 | MS.gene009719:CDS | 35.0% | |
| TTTGGTTAAGCTTGTACATC+AGG | + | chr5.3:58976694-58976713 | None:intergenic | 35.0% | |
| ! | AACCAATTTTCTCTCTGATG+GGG | + | chr5.3:58974623-58974642 | None:intergenic | 35.0% |
| ! | AGTAGGGCTTGTTTGTTAAT+TGG | + | chr5.3:58978884-58978903 | None:intergenic | 35.0% |
| ! | ATAAAGCTGTGATTTTCGGA+TGG | - | chr5.3:58977135-58977154 | MS.gene009719:intron | 35.0% |
| ! | ATAAGGCTTTGTGTACTCTT+TGG | - | chr5.3:58979414-58979433 | MS.gene009719:intron | 35.0% |
| ! | ATGTTCTTCAAGCATTTTGG+TGG | + | chr5.3:58974561-58974580 | None:intergenic | 35.0% |
| ! | CAACCAATTTTCTCTCTGAT+GGG | + | chr5.3:58974624-58974643 | None:intergenic | 35.0% |
| ! | CTGTTATCTAGGATCATCAA+CGG | + | chr5.3:58975314-58975333 | None:intergenic | 35.0% |
| ! | CTTCAAAATTTAAGACCGGA+TGG | + | chr5.3:58974304-58974323 | None:intergenic | 35.0% |
| ! | GAAAGCATAACCAGGTAAAT+GGG | - | chr5.3:58977916-58977935 | MS.gene009719:intron | 35.0% |
| ! | TAGTTTGTGATACCAGGATA+AGG | - | chr5.3:58978940-58978959 | MS.gene009719:intron | 35.0% |
| ! | TCATGCAGCATTTCTAAAGA+TGG | - | chr5.3:58975218-58975237 | MS.gene009719:intron | 35.0% |
| ! | TGAAAGCATAACCAGGTAAA+TGG | - | chr5.3:58977915-58977934 | MS.gene009719:intron | 35.0% |
| ! | TTATGGTGAAGTATTCTGAG+AGG | + | chr5.3:58977499-58977518 | None:intergenic | 35.0% |
| ! | TTCTAAAGATGGTGATTTGG+TGG | - | chr5.3:58975229-58975248 | MS.gene009719:intron | 35.0% |
| ! | TTGAGAATGAAAGCATAACC+AGG | - | chr5.3:58977908-58977927 | MS.gene009719:intron | 35.0% |
| !! | AGAGGGATTAAGTGTTGATA+AGG | - | chr5.3:58974797-58974816 | MS.gene009719:intron | 35.0% |
| !! | CACATTAAGTGTTGGTAAGT+AGG | - | chr5.3:58975464-58975483 | MS.gene009719:intron | 35.0% |
| !! | CTTTCAAGTTCTACTGTCTT+AGG | - | chr5.3:58978809-58978828 | MS.gene009719:intron | 35.0% |
| !! | TGTTCTTCAAGCATTTTGGT+GGG | + | chr5.3:58974560-58974579 | None:intergenic | 35.0% |
| !!! | TCAAGTCTTTTTTCTTGTGC+TGG | + | chr5.3:58979791-58979810 | None:intergenic | 35.0% |
| !!! | TGGCACATGTTTTAGTTGTT+TGG | - | chr5.3:58975382-58975401 | MS.gene009719:intron | 35.0% |
| !!! | TTTTTTGGTAGAATGGGACT+TGG | - | chr5.3:58975027-58975046 | MS.gene009719:intron | 35.0% |
| AAACACCTCTAACTCAACTC+GGG | + | chr5.3:58975126-58975145 | None:intergenic | 40.0% | |
| AACCAAATATACGTCAGTCG+GGG | - | chr5.3:58976707-58976726 | MS.gene009719:intron | 40.0% | |
| AATGTGGGAGAAGGAATTTG+AGG | - | chr5.3:58977786-58977805 | MS.gene009719:intron | 40.0% | |
| ACACTTAATGTGTGGGATAC+TGG | + | chr5.3:58975456-58975475 | None:intergenic | 40.0% | |
| ACAGCTGACAGAACTTTAAG+TGG | + | chr5.3:58977206-58977225 | None:intergenic | 40.0% | |
| ACATGCACAACCACAAAATG+TGG | - | chr5.3:58977770-58977789 | MS.gene009719:intron | 40.0% | |
| ACCGCATTTAAGGACATTGA+TGG | - | chr5.3:58978533-58978552 | MS.gene009719:CDS | 40.0% | |
| ACTGGCAGCATCAATTTATG+AGG | + | chr5.3:58976461-58976480 | None:intergenic | 40.0% | |
| AGAACTTATCCCTGCTCTAA+TGG | - | chr5.3:58978332-58978351 | MS.gene009719:intron | 40.0% | |
| AGCAACAATAACTTCCATGG+TGG | + | chr5.3:58978404-58978423 | None:intergenic | 40.0% | |
| AGCAAGAGTTTGGTATCCTT+TGG | + | chr5.3:58973780-58973799 | None:intergenic | 40.0% | |
| AGCTTGTGTTAGAAGTGAAG+AGG | - | chr5.3:58975084-58975103 | MS.gene009719:intron | 40.0% | |
| AGTGAGACCTTTGGACTTAT+AGG | + | chr5.3:58974652-58974671 | None:intergenic | 40.0% | |
| AGTGTTCTCCAATGTTCTTC+AGG | + | chr5.3:58974443-58974462 | None:intergenic | 40.0% | |
| ATCATATGGGTAGCCATTCA+TGG | + | chr5.3:58977617-58977636 | None:intergenic | 40.0% | |
| ATCGGGTAACATAGTCTTCA+AGG | - | chr5.3:58973716-58973735 | MS.gene009719:CDS | 40.0% | |
| ATGCTGCATGATCTCTTGAA+AGG | + | chr5.3:58975209-58975228 | None:intergenic | 40.0% | |
| ATGTTTCTCATGCAGCAAAG+AGG | - | chr5.3:58978588-58978607 | MS.gene009719:CDS | 40.0% | |
| CAAATGATCGCAGTGAAAGT+AGG | + | chr5.3:58978901-58978920 | None:intergenic | 40.0% | |
| CAACAATAACTTCCATGGTG+GGG | + | chr5.3:58978402-58978421 | None:intergenic | 40.0% | |
| CAACTCAGGTTATGATTAGG+TGG | + | chr5.3:58974033-58974052 | None:intergenic | 40.0% | |
| CAATGGCGTACAACAAAGAA+AGG | - | chr5.3:58977858-58977877 | MS.gene009719:intron | 40.0% | |
| CACCTAATCATAACCTGAGT+TGG | - | chr5.3:58974031-58974050 | MS.gene009719:intron | 40.0% | |
| CATCTCTTCTAACTCATCCA+TGG | + | chr5.3:58979903-58979922 | None:intergenic | 40.0% | |
| CATGCACAACCACAAAATGT+GGG | - | chr5.3:58977771-58977790 | MS.gene009719:intron | 40.0% | |
| CCATCAGAGAGAAAATTGGT+TGG | - | chr5.3:58974622-58974641 | MS.gene009719:intron | 40.0% | |
| CTTTCTTTCTCCCATTTACC+TGG | + | chr5.3:58977929-58977948 | None:intergenic | 40.0% | |
| GAATAGGTTGTTCTTGTCAG+TGG | - | chr5.3:58978172-58978191 | MS.gene009719:intron | 40.0% | |
| GAGATTTAGCACCGCATTTA+AGG | - | chr5.3:58978523-58978542 | MS.gene009719:CDS | 40.0% | |
| GATAATGCAGTGAAGAATGG+AGG | - | chr5.3:58977004-58977023 | MS.gene009719:intron | 40.0% | |
| GATTTGGATTGTATACCTGC+TGG | + | chr5.3:58979928-58979947 | None:intergenic | 40.0% | |
| GCAACAATAACTTCCATGGT+GGG | + | chr5.3:58978403-58978422 | None:intergenic | 40.0% | |
| GCAATCAAGGAATATGCGTT+TGG | + | chr5.3:58979671-58979690 | None:intergenic | 40.0% | |
| GCCCATAAGTACAACTCATA+TGG | + | chr5.3:58975541-58975560 | None:intergenic | 40.0% | |
| GCTTTCTCAGACAAACTTTC+TGG | + | chr5.3:58979875-58979894 | None:intergenic | 40.0% | |
| GGATAAATGTCCATTAGAGC+AGG | + | chr5.3:58978345-58978364 | None:intergenic | 40.0% | |
| GTATCCCACACATTAAGTGT+TGG | - | chr5.3:58975456-58975475 | MS.gene009719:intron | 40.0% | |
| GTGTTCTCCAATGTTCTTCA+GGG | + | chr5.3:58974442-58974461 | None:intergenic | 40.0% | |
| TACCCCATCAGAGAGAAAAT+TGG | - | chr5.3:58974618-58974637 | MS.gene009719:intron | 40.0% | |
| TAGACATCTCAAAGGAGCAA+TGG | - | chr5.3:58977841-58977860 | MS.gene009719:intron | 40.0% | |
| TATGTTCTATCCCATTGGAG+TGG | - | chr5.3:58974383-58974402 | MS.gene009719:intron | 40.0% | |
| TATTTAAGTACCCCCCATTG+TGG | - | chr5.3:58974867-58974886 | MS.gene009719:intron | 40.0% | |
| TCACTTATAGCTGCAATGCA+AGG | - | chr5.3:58976873-58976892 | MS.gene009719:intron | 40.0% | |
| TCAGAGAGAAAATTGGTTGG+GGG | - | chr5.3:58974625-58974644 | MS.gene009719:intron | 40.0% | |
| TCTGACTCTCATACTACCTT+AGG | - | chr5.3:58976918-58976937 | MS.gene009719:intron | 40.0% | |
| TGAACTCAACTCATCGAAAC+TGG | + | chr5.3:58976479-58976498 | None:intergenic | 40.0% | |
| TGCTGCATGATCTCTTGAAA+GGG | + | chr5.3:58975208-58975227 | None:intergenic | 40.0% | |
| TGGAACCGAAAAGATCGATT+GGG | + | chr5.3:58973650-58973669 | None:intergenic | 40.0% | |
| TTCCGCATTGGAACAATTCT+CGG | - | chr5.3:58974055-58974074 | MS.gene009719:intron | 40.0% | |
| TTGGAACCGAAAAGATCGAT+TGG | + | chr5.3:58973651-58973670 | None:intergenic | 40.0% | |
| TTTGGAGACGAAGAGGAATT+GGG | + | chr5.3:58973762-58973781 | None:intergenic | 40.0% | |
| ! | AATTACCCGAGTTGAGTTAG+AGG | - | chr5.3:58975118-58975137 | MS.gene009719:intron | 40.0% |
| ! | ACTTCAGATTTGGAGTACAC+AGG | - | chr5.3:58973606-58973625 | MS.gene009719:CDS | 40.0% |
| ! | ATTCCTTCTCCCACATTTTG+TGG | + | chr5.3:58977783-58977802 | None:intergenic | 40.0% |
| ! | CACATCCCAATCGATCTTTT+CGG | - | chr5.3:58973642-58973661 | MS.gene009719:CDS | 40.0% |
| ! | CCAACCAATTTTCTCTCTGA+TGG | + | chr5.3:58974625-58974644 | None:intergenic | 40.0% |
| ! | GATTGGGATGTGTTGATCTT+CGG | + | chr5.3:58973634-58973653 | None:intergenic | 40.0% |
| ! | TGTTGGTAAGTAGGGAATTG+CGG | - | chr5.3:58975473-58975492 | MS.gene009719:intron | 40.0% |
| !! | ATCACAGCTTTATTACCGAC+TGG | + | chr5.3:58977128-58977147 | None:intergenic | 40.0% |
| !! | CATAGATCGTGGTCTTATTG+TGG | - | chr5.3:58976760-58976779 | MS.gene009719:intron | 40.0% |
| !! | CTGTGTTAGTTTGTGATACC+AGG | - | chr5.3:58978934-58978953 | MS.gene009719:intron | 40.0% |
| !! | GGAAATGATAAACTTGCTGG+CGG | - | chr5.3:58977323-58977342 | MS.gene009719:intron | 40.0% |
| !! | GTTCTCCCTTTTAGCTGTTA+AGG | - | chr5.3:58979997-58980016 | MS.gene009719:CDS | 40.0% |
| !! | TTCTTAACTTGTGCCCTCTT+AGG | + | chr5.3:58974110-58974129 | None:intergenic | 40.0% |
| !!! | GAGTTAGAGGTGTTTTTTGC+TGG | - | chr5.3:58975131-58975150 | MS.gene009719:intron | 40.0% |
| !!! | TGGAACTCCGGTTTGTTTTT+TGG | + | chr5.3:58973670-58973689 | None:intergenic | 40.0% |
| AATGCAGTGAAGAATGGAGG+CGG | - | chr5.3:58977007-58977026 | MS.gene009719:intron | 45.0% | |
| AATTGGGATTGGGTGGTTGA+CGG | + | chr5.3:58973746-58973765 | None:intergenic | 45.0% | |
| ACTACAAGTCTCTGACCATG+TGG | + | chr5.3:58978470-58978489 | None:intergenic | 45.0% | |
| AGACGAAGAGGAATTGGGAT+TGG | + | chr5.3:58973757-58973776 | None:intergenic | 45.0% | |
| AGCCGAGAATTGTTCCAATG+CGG | + | chr5.3:58974060-58974079 | None:intergenic | 45.0% | |
| CAACCACAAAATGTGGGAGA+AGG | - | chr5.3:58977777-58977796 | MS.gene009719:intron | 45.0% | |
| CAATTCCTCTTCGTCTCCAA+AGG | - | chr5.3:58973761-58973780 | MS.gene009719:CDS | 45.0% | |
| CACATGGTTCATCCTTATCC+TGG | + | chr5.3:58978955-58978974 | None:intergenic | 45.0% | |
| CCATGTCATTCCACTCCAAT+GGG | + | chr5.3:58974396-58974415 | None:intergenic | 45.0% | |
| CTGTCGGGAACGTCTATAAT+AGG | + | chr5.3:58977048-58977067 | None:intergenic | 45.0% | |
| GACGAAGAGGAATTGGGATT+GGG | + | chr5.3:58973756-58973775 | None:intergenic | 45.0% | |
| GAGGTTGTAAGTGAGACCTT+TGG | + | chr5.3:58974661-58974680 | None:intergenic | 45.0% | |
| GCTGCATGATCTCTTGAAAG+GGG | + | chr5.3:58975207-58975226 | None:intergenic | 45.0% | |
| GGGTTCCTAACACAATGTCA+GGG | + | chr5.3:58979199-58979218 | None:intergenic | 45.0% | |
| GTGATATGTTAGGCTGGTAC+AGG | - | chr5.3:58978844-58978863 | MS.gene009719:intron | 45.0% | |
| GTTAGAAGAGATGTACCAGC+AGG | - | chr5.3:58979910-58979929 | MS.gene009719:CDS | 45.0% | |
| GTTGATCTTGAATCCCCATG+TGG | - | chr5.3:58974524-58974543 | MS.gene009719:intron | 45.0% | |
| TAAGATTCCACGTGGAACTC+CGG | + | chr5.3:58973682-58973701 | None:intergenic | 45.0% | |
| TACCCCGACTGACGTATATT+TGG | + | chr5.3:58976712-58976731 | None:intergenic | 45.0% | |
| TCACTTTCCACACCCTTCTT+TGG | - | chr5.3:58978495-58978514 | MS.gene009719:CDS | 45.0% | |
| TCATTTCCATTGAACAGGCC+TGG | - | chr5.3:58977256-58977275 | MS.gene009719:intron | 45.0% | |
| TCCATGTCATTCCACTCCAA+TGG | + | chr5.3:58974397-58974416 | None:intergenic | 45.0% | |
| TGATCCCAGGAAAGATTGTC+AGG | + | chr5.3:58976742-58976761 | None:intergenic | 45.0% | |
| TGGGTTCCTAACACAATGTC+AGG | + | chr5.3:58979200-58979219 | None:intergenic | 45.0% | |
| TTACCGATAGACAAGCCAGT+CGG | - | chr5.3:58977110-58977129 | MS.gene009719:intron | 45.0% | |
| TTCCGGTCAAACTCCTAAGA+GGG | - | chr5.3:58974094-58974113 | MS.gene009719:intron | 45.0% | |
| TTCGCCTGACAATCTTTCCT+GGG | - | chr5.3:58976735-58976754 | MS.gene009719:intron | 45.0% | |
| TTTCAAATGTGGGACGCTGT+CGG | + | chr5.3:58977064-58977083 | None:intergenic | 45.0% | |
| TTTCAACCAGGCCTGTTCAA+TGG | + | chr5.3:58977265-58977284 | None:intergenic | 45.0% | |
| TTTCCTGGGATCATAGATCG+TGG | - | chr5.3:58976749-58976768 | MS.gene009719:intron | 45.0% | |
| TTTCGCCTGACAATCTTTCC+TGG | - | chr5.3:58976734-58976753 | MS.gene009719:intron | 45.0% | |
| ! | AACTTTCTGGCGTGAGCTTT+AGG | + | chr5.3:58979862-58979881 | None:intergenic | 45.0% |
| ! | CATCTGCTTTAAGCACACAC+AGG | + | chr5.3:58979144-58979163 | None:intergenic | 45.0% |
| ! | CCTTTTAGCATCCACAATGG+GGG | + | chr5.3:58974881-58974900 | None:intergenic | 45.0% |
| ! | CTTAGCGTTTGCTGATGCAT+CGG | - | chr5.3:58973698-58973717 | MS.gene009719:CDS | 45.0% |
| ! | CTTTGGAGACGAAGAGGAAT+TGG | + | chr5.3:58973763-58973782 | None:intergenic | 45.0% |
| ! | CTTTTAGCATCCACAATGGG+GGG | + | chr5.3:58974880-58974899 | None:intergenic | 45.0% |
| ! | GCCTTTTAGCATCCACAATG+GGG | + | chr5.3:58974882-58974901 | None:intergenic | 45.0% |
| ! | GGCCTTTTAGCATCCACAAT+GGG | + | chr5.3:58974883-58974902 | None:intergenic | 45.0% |
| ! | GGGAAGTGGTGATGAGAATA+AGG | - | chr5.3:58975061-58975080 | MS.gene009719:intron | 45.0% |
| ! | GTGCGAGATATTGGGTTAGA+GGG | - | chr5.3:58974780-58974799 | MS.gene009719:intron | 45.0% |
| ! | GTTGGTAAGTAGGGAATTGC+GGG | - | chr5.3:58975474-58975493 | MS.gene009719:intron | 45.0% |
| ! | TCTCTGATGGGGTACCTAAT+AGG | + | chr5.3:58974612-58974631 | None:intergenic | 45.0% |
| ! | TGTGCGAGATATTGGGTTAG+AGG | - | chr5.3:58974779-58974798 | MS.gene009719:intron | 45.0% |
| ! | TTAGCGTTTGCTGATGCATC+GGG | - | chr5.3:58973699-58973718 | MS.gene009719:CDS | 45.0% |
| !! | AGAGACTAACATGATGACGG+TGG | + | chr5.3:58973833-58973852 | None:intergenic | 45.0% |
| !! | TTACCGACTGGCTTGTCTAT+CGG | + | chr5.3:58977116-58977135 | None:intergenic | 45.0% |
| !!! | AATATGTATTTTTTTTTTTT+TGG | - | chr5.3:58975012-58975031 | MS.gene009719:intron | 5.0% |
| AAACAAACCGGAGTTCCACG+TGG | - | chr5.3:58973672-58973691 | MS.gene009719:CDS | 50.0% | |
| AAGCACACACAGGTCTGCAT+GGG | + | chr5.3:58979134-58979153 | None:intergenic | 50.0% | |
| AGACCACGATCTATGATCCC+AGG | + | chr5.3:58976755-58976774 | None:intergenic | 50.0% | |
| AGACTGCAACAGAGGTTAGG+CGG | - | chr5.3:58978265-58978284 | MS.gene009719:intron | 50.0% | |
| CAGAGCCCTGACATTGTGTT+AGG | - | chr5.3:58979191-58979210 | MS.gene009719:intron | 50.0% | |
| CCCATTGGAGTGGAATGACA+TGG | - | chr5.3:58974393-58974412 | MS.gene009719:intron | 50.0% | |
| CCCCCATTGTGGATGCTAAA+AGG | - | chr5.3:58974878-58974897 | MS.gene009719:intron | 50.0% | |
| CGGTTCTCCCTGAAGAACAT+TGG | - | chr5.3:58974432-58974451 | MS.gene009719:intron | 50.0% | |
| CTTCCGGTCAAACTCCTAAG+AGG | - | chr5.3:58974093-58974112 | MS.gene009719:intron | 50.0% | |
| GAAGAGGAATTGGGATTGGG+TGG | + | chr5.3:58973753-58973772 | None:intergenic | 50.0% | |
| GAATCCCCATGTGGCAATGA+TGG | - | chr5.3:58974533-58974552 | MS.gene009719:intron | 50.0% | |
| GCAAACGCTAAGATTCCACG+TGG | + | chr5.3:58973690-58973709 | None:intergenic | 50.0% | |
| GGGAGAACCGTTCTTCAACA+TGG | + | chr5.3:58974422-58974441 | None:intergenic | 50.0% | |
| GTCTGAGAAAGCTGTAGCCA+TGG | - | chr5.3:58979883-58979902 | MS.gene009719:CDS | 50.0% | |
| GTTCTGTCAGCTGTGTCTGT+TGG | - | chr5.3:58977212-58977231 | MS.gene009719:intron | 50.0% | |
| TAAGCACACACAGGTCTGCA+TGG | + | chr5.3:58979135-58979154 | None:intergenic | 50.0% | |
| TCCAATGCGGAATCCAACTC+AGG | + | chr5.3:58974047-58974066 | None:intergenic | 50.0% | |
| TCTCTCTCCAAAGAAGGGTG+TGG | + | chr5.3:58978505-58978524 | None:intergenic | 50.0% | |
| TGACGGTGGATGAAGAACAG+AGG | + | chr5.3:58973819-58973838 | None:intergenic | 50.0% | |
| TGCCCTCTTAGGAGTTTGAC+CGG | + | chr5.3:58974099-58974118 | None:intergenic | 50.0% | |
| TGGGGGTCCTATAAGTCCAA+AGG | - | chr5.3:58974642-58974661 | MS.gene009719:intron | 50.0% | |
| TGGGTCCATCATTGCCACAT+GGG | + | chr5.3:58974541-58974560 | None:intergenic | 50.0% | |
| TTCAAATGTGGGACGCTGTC+GGG | + | chr5.3:58977063-58977082 | None:intergenic | 50.0% | |
| ! | ACCTGAGTTGGATTCCGCAT+TGG | - | chr5.3:58974043-58974062 | MS.gene009719:intron | 50.0% |
| ! | CGGCCTTTTAGCATCCACAA+TGG | + | chr5.3:58974884-58974903 | None:intergenic | 50.0% |
| ! | GGTATCCTTTGGAGACGAAG+AGG | + | chr5.3:58973769-58973788 | None:intergenic | 50.0% |
| !! | AGATGGTGATTTGGTGGCAC+AGG | - | chr5.3:58975235-58975254 | MS.gene009719:intron | 50.0% |
| GACTGCAACAGAGGTTAGGC+GGG | - | chr5.3:58978266-58978285 | MS.gene009719:intron | 55.0% | |
| GCCAGACTGCAACAGAGGTT+AGG | - | chr5.3:58978262-58978281 | MS.gene009719:intron | 55.0% | |
| GCCTAACCTCTGTTGCAGTC+TGG | + | chr5.3:58978266-58978285 | None:intergenic | 55.0% | |
| GGGTCCATCATTGCCACATG+GGG | + | chr5.3:58974540-58974559 | None:intergenic | 55.0% | |
| GTGGGTCCATCATTGCCACA+TGG | + | chr5.3:58974542-58974561 | None:intergenic | 55.0% | |
| TATGCATGCTTGCCCCACCA+TGG | - | chr5.3:58978387-58978406 | MS.gene009719:intron | 55.0% | |
| TGCAGCAAAGAGGTCGTTGC+AGG | - | chr5.3:58978598-58978617 | MS.gene009719:CDS | 55.0% | |
| !!! | CTTGCTGGCGGTTTTGAGTG+TGG | - | chr5.3:58977335-58977354 | MS.gene009719:intron | 55.0% |
| CTGCTGCCAGACTGCAACAG+AGG | - | chr5.3:58978257-58978276 | MS.gene009719:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 58973600 | 58980057 | 58973600 | ID=MS.gene009719 |
| chr5.3 | mRNA | 58973600 | 58980057 | 58973600 | ID=MS.gene009719.t1;Parent=MS.gene009719 |
| chr5.3 | exon | 58979815 | 58980057 | 58979815 | ID=MS.gene009719.t1.exon1;Parent=MS.gene009719.t1 |
| chr5.3 | CDS | 58979815 | 58980057 | 58979815 | ID=cds.MS.gene009719.t1;Parent=MS.gene009719.t1 |
| chr5.3 | exon | 58978401 | 58978619 | 58978401 | ID=MS.gene009719.t1.exon2;Parent=MS.gene009719.t1 |
| chr5.3 | CDS | 58978401 | 58978619 | 58978401 | ID=cds.MS.gene009719.t1;Parent=MS.gene009719.t1 |
| chr5.3 | exon | 58976929 | 58976971 | 58976929 | ID=MS.gene009719.t1.exon3;Parent=MS.gene009719.t1 |
| chr5.3 | CDS | 58976929 | 58976971 | 58976929 | ID=cds.MS.gene009719.t1;Parent=MS.gene009719.t1 |
| chr5.3 | exon | 58976424 | 58976444 | 58976424 | ID=MS.gene009719.t1.exon4;Parent=MS.gene009719.t1 |
| chr5.3 | CDS | 58976424 | 58976444 | 58976424 | ID=cds.MS.gene009719.t1;Parent=MS.gene009719.t1 |
| chr5.3 | exon | 58973600 | 58973823 | 58973600 | ID=MS.gene009719.t1.exon5;Parent=MS.gene009719.t1 |
| chr5.3 | CDS | 58973600 | 58973823 | 58973600 | ID=cds.MS.gene009719.t1;Parent=MS.gene009719.t1 |
| Gene Sequence |
| Protein sequence |
