Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010439.t1 | XP_003611879.1 | 100 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 9.60E-148 | 532.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010439.t1 | P49204 | 90.5 | 262 | 25 | 0 | 1 | 262 | 1 | 262 | 6.3e-140 | 498.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010439.t1 | B7FL29 | 100.0 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 6.9e-148 | 532.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene047717 | MS.gene010439 | PPI |
| MS.gene72768 | MS.gene010439 | PPI |
| MS.gene53517 | MS.gene010439 | PPI |
| MS.gene82426 | MS.gene010439 | PPI |
| MS.gene43012 | MS.gene010439 | PPI |
| MS.gene83444 | MS.gene010439 | PPI |
| MS.gene95672 | MS.gene010439 | PPI |
| MS.gene035447 | MS.gene010439 | PPI |
| MS.gene52173 | MS.gene010439 | PPI |
| MS.gene023799 | MS.gene010439 | PPI |
| MS.gene42236 | MS.gene010439 | PPI |
| MS.gene38870 | MS.gene010439 | PPI |
| MS.gene010439 | MS.gene073888 | PPI |
| MS.gene27648 | MS.gene010439 | PPI |
| MS.gene069005 | MS.gene010439 | PPI |
| MS.gene99501 | MS.gene010439 | PPI |
| MS.gene74487 | MS.gene010439 | PPI |
| MS.gene59369 | MS.gene010439 | PPI |
| MS.gene071029 | MS.gene010439 | PPI |
| MS.gene028153 | MS.gene010439 | PPI |
| MS.gene041181 | MS.gene010439 | PPI |
| MS.gene032440 | MS.gene010439 | PPI |
| MS.gene010439 | MS.gene053443 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010439.t1 | MTR_5g018940 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
| MS.gene010439.t1 | MTR_5g018940 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
| MS.gene010439.t1 | MTR_8g052030 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
| MS.gene010439.t1 | MTR_4g014590 | 95.094 | 265 | 12 | 1 | 1 | 265 | 1 | 264 | 0.0 | 518 |
| MS.gene010439.t1 | MTR_7g069950 | 94.510 | 255 | 14 | 0 | 1 | 255 | 1 | 255 | 0.0 | 501 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene010439.t1 | AT5G07090 | 90.458 | 262 | 25 | 0 | 1 | 262 | 1 | 262 | 0.0 | 506 |
| MS.gene010439.t1 | AT2G17360 | 90.769 | 260 | 24 | 0 | 1 | 260 | 1 | 260 | 0.0 | 504 |
| MS.gene010439.t1 | AT5G58420 | 90.076 | 262 | 26 | 0 | 1 | 262 | 1 | 262 | 0.0 | 503 |
| MS.gene010439.t1 | AT5G07090 | 89.754 | 244 | 25 | 0 | 19 | 262 | 1 | 244 | 2.41e-169 | 468 |
| MS.gene010439.t1 | AT5G07090 | 89.754 | 244 | 25 | 0 | 19 | 262 | 1 | 244 | 2.41e-169 | 468 |
| MS.gene010439.t1 | AT2G17360 | 91.160 | 181 | 16 | 0 | 1 | 181 | 1 | 181 | 2.61e-125 | 354 |
Find 89 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAAAGCTCTCATTTGTCTT+AGG | 0.156777 | 5.4:+11457629 | None:intergenic |
| GCATTGGATGCTTGACAAAT+TGG | 0.267158 | 5.4:-11458404 | MS.gene010439:CDS |
| TTAGCCCTGATGACGGGGTC+TGG | 0.336130 | 5.4:+11456987 | None:intergenic |
| TGTGGTCCAGATGAGGGTTT+AGG | 0.339811 | 5.4:+11458280 | None:intergenic |
| AGGTTCGTTCAGTGCAATTT+GGG | 0.356395 | 5.4:-11457061 | MS.gene010439:CDS |
| AAGGTTCGTTCAGTGCAATT+TGG | 0.362570 | 5.4:-11457062 | MS.gene010439:CDS |
| TGCGACCATCATAGGTGTTC+AGG | 0.372486 | 5.4:+11457021 | None:intergenic |
| GAAAGCTCTCATTTGTCTTA+GGG | 0.377197 | 5.4:+11457630 | None:intergenic |
| GTTACCCAGACCCCGTCATC+AGG | 0.378657 | 5.4:-11456992 | MS.gene010439:CDS |
| GGTGACTGGTGGTAAGAATA+GGG | 0.379702 | 5.4:-11456889 | MS.gene010439:CDS |
| TTGTCAAGCATCCAATGCTT+GGG | 0.386706 | 5.4:+11458409 | None:intergenic |
| ATTTCATCAAATTTGATGTT+GGG | 0.389801 | 5.4:-11456923 | MS.gene010439:CDS |
| GACTTATCCAGCTGGATTCA+TGG | 0.391447 | 5.4:-11458125 | MS.gene010439:CDS |
| TGGTGACTGGTGGTAAGAAT+AGG | 0.412505 | 5.4:-11456890 | MS.gene010439:CDS |
| AATGAGCGGGAGACATTCCC+TGG | 0.424251 | 5.4:+11458252 | None:intergenic |
| CTGGTCAATGTGTTCACTAT+TGG | 0.427005 | 5.4:-11456771 | MS.gene010439:CDS |
| CTTTGAGACAATCCACGTTC+AGG | 0.430746 | 5.4:-11456823 | MS.gene010439:CDS |
| TAATTTAATACCCTTGCCCT+TGG | 0.435192 | 5.4:+11456719 | None:intergenic |
| TTTGTCAAGCATCCAATGCT+TGG | 0.437860 | 5.4:+11458408 | None:intergenic |
| CAACGACATGTCCTTGTTGA+TGG | 0.438982 | 5.4:-11458166 | MS.gene010439:CDS |
| ACGGATAGTGCGACCATCAT+AGG | 0.439814 | 5.4:+11457013 | None:intergenic |
| CCTCATCATCTCTGACTGAA+TGG | 0.453638 | 5.4:+11457573 | None:intergenic |
| GTGTCATTAGCCCTGATGAC+GGG | 0.456779 | 5.4:+11456981 | None:intergenic |
| TCATGAGTTTGCAACTCGTC+TGG | 0.461260 | 5.4:-11456790 | MS.gene010439:CDS |
| CATTGGATGCTTGACAAATT+GGG | 0.462746 | 5.4:-11458403 | MS.gene010439:CDS |
| TGATGTTGGGAATGTAGTTA+TGG | 0.467410 | 5.4:-11456910 | MS.gene010439:CDS |
| CAAGAACAGAGAAAAGCATA+AGG | 0.471422 | 5.4:-11456850 | MS.gene010439:CDS |
| CCATCATAGGTGTTCAGGTA+TGG | 0.471971 | 5.4:+11457026 | None:intergenic |
| TAGGCTCCTAAACCCTCATC+TGG | 0.473255 | 5.4:-11458286 | MS.gene010439:CDS |
| CATCTGGACCACACAAGTCC+AGG | 0.474068 | 5.4:-11458270 | MS.gene010439:CDS |
| ATGGAGACGGAAACGGCCTT+TGG | 0.474465 | 5.4:+11457592 | None:intergenic |
| TAGCCCTGATGACGGGGTCT+GGG | 0.476922 | 5.4:+11456988 | None:intergenic |
| TCAGAATAGCAATGACTTCA+CGG | 0.477884 | 5.4:+11458191 | None:intergenic |
| TCCTTGTTGATGGCAAAGTC+AGG | 0.479245 | 5.4:-11458156 | MS.gene010439:CDS |
| GATTTCATCAAATTTGATGT+TGG | 0.482045 | 5.4:-11456924 | MS.gene010439:CDS |
| TAACTGTCATTGAGGAAGCT+AGG | 0.506931 | 5.4:-11456698 | MS.gene010439:CDS |
| ACTTATCCAGCTGGATTCAT+GGG | 0.514100 | 5.4:-11458124 | MS.gene010439:intron |
| TTCATACCCATGAATCCAGC+TGG | 0.521349 | 5.4:+11458118 | None:intergenic |
| CCATACCTGAACACCTATGA+TGG | 0.523294 | 5.4:-11457026 | MS.gene010439:CDS |
| CTGAACGTGGATTGTCTCAA+AGG | 0.529462 | 5.4:+11456824 | None:intergenic |
| GGCTAATGACACTATCAAGC+TGG | 0.530045 | 5.4:-11456970 | MS.gene010439:CDS |
| GCCATGGGTTTCTCTTCCCA+AGG | 0.532349 | 5.4:-11456736 | MS.gene010439:CDS |
| GGTTTCTCTTCCCAAGGGCA+AGG | 0.533054 | 5.4:-11456730 | MS.gene010439:CDS |
| TGACACTATCAAGCTGGACC+TGG | 0.533062 | 5.4:-11456964 | MS.gene010439:CDS |
| TGATGACGGGGTCTGGGTAA+CGG | 0.533614 | 5.4:+11456994 | None:intergenic |
| AATTTAATACCCTTGCCCTT+GGG | 0.533880 | 5.4:+11456720 | None:intergenic |
| TTGGCAAGGGGACAAAGCCA+TGG | 0.543228 | 5.4:-11456752 | MS.gene010439:CDS |
| TCAGTGCAATTTGGGCAGAA+AGG | 0.544106 | 5.4:-11457053 | MS.gene010439:CDS |
| GGGAATGTAGTTATGGTGAC+TGG | 0.550052 | 5.4:-11456903 | MS.gene010439:CDS |
| GACTTGTGTGGTCCAGATGA+GGG | 0.550628 | 5.4:+11458274 | None:intergenic |
| TATTAAATTAACTGTCATTG+AGG | 0.555206 | 5.4:-11456706 | MS.gene010439:CDS |
| CAATGTGTTCACTATTGGCA+AGG | 0.556225 | 5.4:-11456766 | MS.gene010439:CDS |
| TGTCAAGCATCCAATGCTTG+GGG | 0.568821 | 5.4:+11458410 | None:intergenic |
| GGACTTGTGTGGTCCAGATG+AGG | 0.570686 | 5.4:+11458273 | None:intergenic |
| GTTTCTCTTCCCAAGGGCAA+GGG | 0.571738 | 5.4:-11456729 | MS.gene010439:CDS |
| TCATTGAGGAAGCTAGGAAG+AGG | 0.573169 | 5.4:-11456692 | MS.gene010439:CDS |
| TGGCAAGGGGACAAAGCCAT+GGG | 0.585049 | 5.4:-11456751 | MS.gene010439:CDS |
| TTCGCAAGATCAGAATGAGC+GGG | 0.587080 | 5.4:+11458239 | None:intergenic |
| TGACTGAATGGAGACGGAAA+CGG | 0.588177 | 5.4:+11457585 | None:intergenic |
| CATCTCTGACTGAATGGAGA+CGG | 0.590006 | 5.4:+11457579 | None:intergenic |
| GTTTGAAGAAGCATTTGAAG+AGG | 0.590332 | 5.4:-11458441 | MS.gene010439:CDS |
| AGTCAGAGATGATGAGGCAA+AGG | 0.591111 | 5.4:-11457567 | MS.gene010439:intron |
| CCATTCAGTCAGAGATGATG+AGG | 0.595121 | 5.4:-11457573 | MS.gene010439:CDS |
| AAGAACAGAGAAAAGCATAA+GGG | 0.598361 | 5.4:-11456849 | MS.gene010439:CDS |
| AATGTGTTCACTATTGGCAA+GGG | 0.602196 | 5.4:-11456765 | MS.gene010439:CDS |
| ATCTGGACCACACAAGTCCA+GGG | 0.607205 | 5.4:-11458269 | MS.gene010439:CDS |
| ATCCACGTTCAGGATGCCAC+TGG | 0.616221 | 5.4:-11456813 | MS.gene010439:CDS |
| GACCAGTGGCATCCTGAACG+TGG | 0.616751 | 5.4:+11456811 | None:intergenic |
| CCATGGGTTTCTCTTCCCAA+GGG | 0.618310 | 5.4:-11456735 | MS.gene010439:CDS |
| ACTGACAAGACTTATCCAGC+TGG | 0.621794 | 5.4:-11458133 | MS.gene010439:CDS |
| CGTTTGCTGTATGACACCAA+AGG | 0.627898 | 5.4:-11457608 | MS.gene010439:CDS |
| AGTGTCATTAGCCCTGATGA+CGG | 0.628940 | 5.4:+11456980 | None:intergenic |
| ATGGCAGTTCAAGCTGTGCA+AGG | 0.628961 | 5.4:-11457081 | MS.gene010439:intron |
| CACTATCAAGCTGGACCTGG+AGG | 0.630561 | 5.4:-11456961 | MS.gene010439:CDS |
| GTGACTGGTGGTAAGAATAG+GGG | 0.630861 | 5.4:-11456888 | MS.gene010439:CDS |
| TCCTGACTTTGCCATCAACA+AGG | 0.633379 | 5.4:+11458155 | None:intergenic |
| AGACATTCCCTGGACTTGTG+TGG | 0.634907 | 5.4:+11458262 | None:intergenic |
| TGTCATTAGCCCTGATGACG+GGG | 0.640624 | 5.4:+11456982 | None:intergenic |
| TTGTGAATGTAACAGGCGAG+AGG | 0.643632 | 5.4:-11458463 | MS.gene010439:intron |
| GTCAAGCATCCAATGCTTGG+GGG | 0.650283 | 5.4:+11458411 | None:intergenic |
| TTACCCAGACCCCGTCATCA+GGG | 0.650709 | 5.4:-11456991 | MS.gene010439:CDS |
| CCCTTGGGAAGAGAAACCCA+TGG | 0.658024 | 5.4:+11456735 | None:intergenic |
| CATTGAGGAAGCTAGGAAGA+GGG | 0.661325 | 5.4:-11456691 | MS.gene010439:CDS |
| TGACTGGTGGTAAGAATAGG+GGG | 0.662881 | 5.4:-11456887 | MS.gene010439:CDS |
| ATGTGTTCACTATTGGCAAG+GGG | 0.666865 | 5.4:-11456764 | MS.gene010439:CDS |
| TTTCGCAAGATCAGAATGAG+CGG | 0.667794 | 5.4:+11458238 | None:intergenic |
| TGGATGCTTGACAAATTGGG+TGG | 0.687057 | 5.4:-11458400 | MS.gene010439:CDS |
| AGTTGCAAACTCATGACCAG+TGG | 0.709942 | 5.4:+11456797 | None:intergenic |
| AATGTAGTTATGGTGACTGG+TGG | 0.733221 | 5.4:-11456900 | MS.gene010439:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATTAAAATCAAATATAAA+CGG | + | chr5.4:11456894-11456913 | None:intergenic | 10.0% |
| !!! | ATATTTTAAAAAATACAATC+AGG | + | chr5.4:11458187-11458206 | None:intergenic | 10.0% |
| !!! | TATTTTAAAAAATACAATCA+GGG | + | chr5.4:11458186-11458205 | None:intergenic | 10.0% |
| !!! | TTTATCATTATTTATTTTCT+GGG | - | chr5.4:11456802-11456821 | MS.gene010439:CDS | 10.0% |
| !!! | TTTTTTAAAATATTTGTATC+TGG | - | chr5.4:11458194-11458213 | MS.gene010439:CDS | 10.0% |
| !! | AAAAGAAAATGAAAAAATTG+AGG | + | chr5.4:11456684-11456703 | None:intergenic | 15.0% |
| !! | ATATTATAATTAACATGTGA+TGG | - | chr5.4:11458570-11458589 | MS.gene010439:intron | 15.0% |
| !! | CAAATTCAAAAATTTATCTT+AGG | + | chr5.4:11457376-11457395 | None:intergenic | 15.0% |
| !!! | CTAAGATAAATTTTTGAATT+TGG | - | chr5.4:11457374-11457393 | MS.gene010439:intron | 15.0% |
| !!! | CTTTATCATTATTTATTTTC+TGG | - | chr5.4:11456801-11456820 | MS.gene010439:CDS | 15.0% |
| !!! | GTAATTTGATTTATGATATT+AGG | - | chr5.4:11456862-11456881 | MS.gene010439:CDS | 15.0% |
| !! | AAAAAATAAACCAATCCAAA+CGG | + | chr5.4:11457001-11457020 | None:intergenic | 20.0% |
| !! | ATTCTATGAATCATTTGATT+TGG | - | chr5.4:11458154-11458173 | MS.gene010439:CDS | 20.0% |
| !! | ATTTCATCAAATTTGATGTT+GGG | - | chr5.4:11458941-11458960 | MS.gene010439:intron | 20.0% |
| !! | TATCATAAATCAAATTACAC+AGG | + | chr5.4:11456860-11456879 | None:intergenic | 20.0% |
| !! | TATTAAATTAACTGTCATTG+AGG | - | chr5.4:11459158-11459177 | MS.gene010439:intron | 20.0% |
| !!! | AGATTTATTTTATGTATGCA+TGG | - | chr5.4:11458648-11458667 | MS.gene010439:intron | 20.0% |
| !!! | ATCATATTTCAATTGATTCA+AGG | - | chr5.4:11457508-11457527 | MS.gene010439:intron | 20.0% |
| !!! | ATTTTTTGCGTGAAATTTAT+AGG | - | chr5.4:11457559-11457578 | MS.gene010439:intron | 20.0% |
| ! | AAAAATAAGTCAATCCAAAC+GGG | - | chr5.4:11457195-11457214 | MS.gene010439:intron | 25.0% |
| ! | AGCAAACAGAAAATATGTAT+AGG | + | chr5.4:11458720-11458739 | None:intergenic | 25.0% |
| ! | CAAAAATAAGTCAATCCAAA+CGG | - | chr5.4:11457194-11457213 | MS.gene010439:intron | 25.0% |
| ! | GATTTCATCAAATTTGATGT+TGG | - | chr5.4:11458940-11458959 | MS.gene010439:intron | 25.0% |
| ! | TCAATCAAGCTCAAAATTAA+GGG | + | chr5.4:11456923-11456942 | None:intergenic | 25.0% |
| ! | TGATGTATTATAGCAAAGTA+TGG | - | chr5.4:11457895-11457914 | MS.gene010439:intron | 25.0% |
| !! | CGAAAATTTATTTGGAGTTT+AGG | - | chr5.4:11456832-11456851 | MS.gene010439:CDS | 25.0% |
| !! | GTTTGTTGCGAAAATTTATT+TGG | - | chr5.4:11456824-11456843 | MS.gene010439:CDS | 25.0% |
| !!! | GAACTTTGATTTTTGATCTT+AGG | - | chr5.4:11457238-11457257 | MS.gene010439:intron | 25.0% |
| !!! | GTTTTATCTGAAGTTAAAAG+TGG | - | chr5.4:11457967-11457986 | MS.gene010439:intron | 25.0% |
| AGAGATCAGTGATCAAATAA+AGG | + | chr5.4:11458325-11458344 | None:intergenic | 30.0% | |
| ATGAAAAACATGCCAAATAC+TGG | + | chr5.4:11458042-11458061 | None:intergenic | 30.0% | |
| ATGGTGTAATTAACATGTGA+TGG | - | chr5.4:11458667-11458686 | MS.gene010439:intron | 30.0% | |
| ATGTTAAACACACGACATAA+AGG | + | chr5.4:11457300-11457319 | None:intergenic | 30.0% | |
| ATTCATAGAATTCTTTCACG+AGG | + | chr5.4:11458145-11458164 | None:intergenic | 30.0% | |
| CTCAATCAAGCTCAAAATTA+AGG | + | chr5.4:11456924-11456943 | None:intergenic | 30.0% | |
| GCAAAAAATTACATCAGTCT+TGG | + | chr5.4:11457548-11457567 | None:intergenic | 30.0% | |
| GTATTATAGCAAAGTATGGT+AGG | - | chr5.4:11457899-11457918 | MS.gene010439:intron | 30.0% | |
| TAAATAAGTCGATCCAAACA+TGG | - | chr5.4:11456966-11456985 | MS.gene010439:CDS | 30.0% | |
| TAAATAAGTTGCCTGATCTT+CGG | - | chr5.4:11458116-11458135 | MS.gene010439:intron | 30.0% | |
| TTAGACGATCTATTGTAACA+TGG | + | chr5.4:11458014-11458033 | None:intergenic | 30.0% | |
| TTTGAATCTCATCTTCGTAA+TGG | - | chr5.4:11456701-11456720 | MS.gene010439:CDS | 30.0% | |
| TTTGGACAATCAACATTCTT+TGG | - | chr5.4:11457807-11457826 | MS.gene010439:intron | 30.0% | |
| ! | AAGAACAGAGAAAAGCATAA+GGG | - | chr5.4:11459015-11459034 | MS.gene010439:intron | 30.0% |
| ! | TTTGGCATGTTTTTCATTAC+TGG | - | chr5.4:11458045-11458064 | MS.gene010439:intron | 30.0% |
| !!! | TTTTCATTACTGGTTTGTTC+TGG | - | chr5.4:11458055-11458074 | MS.gene010439:intron | 30.0% |
| AAGCCATTCAAAGTATGCTA+CGG | + | chr5.4:11458371-11458390 | None:intergenic | 35.0% | |
| AATGTGTTCACTATTGGCAA+GGG | - | chr5.4:11459099-11459118 | MS.gene010439:intron | 35.0% | |
| AATTTAATACCCTTGCCCTT+GGG | + | chr5.4:11459147-11459166 | None:intergenic | 35.0% | |
| AGCAAAGTATGGTAGGTAAA+CGG | - | chr5.4:11457906-11457925 | MS.gene010439:intron | 35.0% | |
| CATTGGATGCTTGACAAATT+GGG | - | chr5.4:11457461-11457480 | MS.gene010439:intron | 35.0% | |
| CGATCCAAACATGGTTTAAT+GGG | - | chr5.4:11456975-11456994 | MS.gene010439:CDS | 35.0% | |
| GAAAGCTCTCATTTGTCTTA+GGG | + | chr5.4:11458237-11458256 | None:intergenic | 35.0% | |
| GCATTATTCACAACATGTCA+AGG | - | chr5.4:11457062-11457081 | MS.gene010439:CDS | 35.0% | |
| TAATTTAATACCCTTGCCCT+TGG | + | chr5.4:11459148-11459167 | None:intergenic | 35.0% | |
| TCAGAATAGCAATGACTTCA+CGG | + | chr5.4:11457676-11457695 | None:intergenic | 35.0% | |
| TCGATCCAAACATGGTTTAA+TGG | - | chr5.4:11456974-11456993 | MS.gene010439:CDS | 35.0% | |
| TGATGTTGGGAATGTAGTTA+TGG | - | chr5.4:11458954-11458973 | MS.gene010439:intron | 35.0% | |
| TGGATGTTTGTGAATGTAAC+AGG | - | chr5.4:11457394-11457413 | MS.gene010439:intron | 35.0% | |
| TTCCTTGTATGTGATGTACA+TGG | - | chr5.4:11458764-11458783 | MS.gene010439:intron | 35.0% | |
| ! | ACACAGTGTTGTTACTGAAA+TGG | - | chr5.4:11456765-11456784 | MS.gene010439:CDS | 35.0% |
| ! | CAAGAACAGAGAAAAGCATA+AGG | - | chr5.4:11459014-11459033 | MS.gene010439:intron | 35.0% |
| !! | GTTTGAAGAAGCATTTGAAG+AGG | - | chr5.4:11457423-11457442 | MS.gene010439:intron | 35.0% |
| !! | TGAATCATTTGATTTGGCTG+TGG | - | chr5.4:11458160-11458179 | MS.gene010439:CDS | 35.0% |
| AAGGTTCGTTCAGTGCAATT+TGG | - | chr5.4:11458802-11458821 | MS.gene010439:intron | 40.0% | |
| AATGTAGTTATGGTGACTGG+TGG | - | chr5.4:11458964-11458983 | MS.gene010439:intron | 40.0% | |
| ACTAACACTAAGAACCCGTT+TGG | + | chr5.4:11457212-11457231 | None:intergenic | 40.0% | |
| ACTCCGTAGCATACTTTGAA+TGG | - | chr5.4:11458365-11458384 | MS.gene010439:intron | 40.0% | |
| ACTTATCCAGCTGGATTCAT+GGG | - | chr5.4:11457740-11457759 | MS.gene010439:intron | 40.0% | |
| AGGTTCGTTCAGTGCAATTT+GGG | - | chr5.4:11458803-11458822 | MS.gene010439:intron | 40.0% | |
| ATGTGTTCACTATTGGCAAG+GGG | - | chr5.4:11459100-11459119 | MS.gene010439:intron | 40.0% | |
| CAATGTGTTCACTATTGGCA+AGG | - | chr5.4:11459098-11459117 | MS.gene010439:intron | 40.0% | |
| CGAAAGCTCTCATTTGTCTT+AGG | + | chr5.4:11458238-11458257 | None:intergenic | 40.0% | |
| CGTCTAAGTTCACCAGTATT+TGG | - | chr5.4:11458027-11458046 | MS.gene010439:intron | 40.0% | |
| CTGGTCAATGTGTTCACTAT+TGG | - | chr5.4:11459093-11459112 | MS.gene010439:intron | 40.0% | |
| GCATTGGATGCTTGACAAAT+TGG | - | chr5.4:11457460-11457479 | MS.gene010439:intron | 40.0% | |
| GTGATGGTTGTTACTGTGAA+TGG | - | chr5.4:11458586-11458605 | MS.gene010439:intron | 40.0% | |
| TAACTGTCATTGAGGAAGCT+AGG | - | chr5.4:11459166-11459185 | MS.gene010439:intron | 40.0% | |
| TGCCATGTACATCACATACA+AGG | + | chr5.4:11458769-11458788 | None:intergenic | 40.0% | |
| TTGTCAAGCATCCAATGCTT+GGG | + | chr5.4:11457458-11457477 | None:intergenic | 40.0% | |
| TTTCGCAAGATCAGAATGAG+CGG | + | chr5.4:11457629-11457648 | None:intergenic | 40.0% | |
| TTTGTCAAGCATCCAATGCT+TGG | + | chr5.4:11457459-11457478 | None:intergenic | 40.0% | |
| !!! | CAACAATCTTGTTTTCCTCC+AGG | + | chr5.4:11458921-11458940 | None:intergenic | 40.0% |
| ACGGCCCATTAAACCATGTT+TGG | + | chr5.4:11456982-11457001 | None:intergenic | 45.0% | |
| ACTGACAAGACTTATCCAGC+TGG | - | chr5.4:11457731-11457750 | MS.gene010439:intron | 45.0% | |
| AGTCAGAGATGATGAGGCAA+AGG | - | chr5.4:11458297-11458316 | MS.gene010439:intron | 45.0% | |
| AGTTGCAAACTCATGACCAG+TGG | + | chr5.4:11459070-11459089 | None:intergenic | 45.0% | |
| CAACGACATGTCCTTGTTGA+TGG | - | chr5.4:11457698-11457717 | MS.gene010439:intron | 45.0% | |
| CATCTCTGACTGAATGGAGA+CGG | + | chr5.4:11458288-11458307 | None:intergenic | 45.0% | |
| CATTGAGGAAGCTAGGAAGA+GGG | - | chr5.4:11459173-11459192 | MS.gene010439:intron | 45.0% | |
| CCATACCTGAACACCTATGA+TGG | - | chr5.4:11458838-11458857 | MS.gene010439:intron | 45.0% | |
| CCATCATAGGTGTTCAGGTA+TGG | + | chr5.4:11458841-11458860 | None:intergenic | 45.0% | |
| CCATTCAGTCAGAGATGATG+AGG | - | chr5.4:11458291-11458310 | MS.gene010439:intron | 45.0% | |
| CCTCATCATCTCTGACTGAA+TGG | + | chr5.4:11458294-11458313 | None:intergenic | 45.0% | |
| GACTTATCCAGCTGGATTCA+TGG | - | chr5.4:11457739-11457758 | MS.gene010439:intron | 45.0% | |
| GGCTAATGACACTATCAAGC+TGG | - | chr5.4:11458894-11458913 | MS.gene010439:intron | 45.0% | |
| GGGAATGTAGTTATGGTGAC+TGG | - | chr5.4:11458961-11458980 | MS.gene010439:intron | 45.0% | |
| GGTGACTGGTGGTAAGAATA+GGG | - | chr5.4:11458975-11458994 | MS.gene010439:intron | 45.0% | |
| GTGACTGGTGGTAAGAATAG+GGG | - | chr5.4:11458976-11458995 | MS.gene010439:intron | 45.0% | |
| TCAGTGCAATTTGGGCAGAA+AGG | - | chr5.4:11458811-11458830 | MS.gene010439:intron | 45.0% | |
| TCATGAGTTTGCAACTCGTC+TGG | - | chr5.4:11459074-11459093 | MS.gene010439:intron | 45.0% | |
| TCATTGAGGAAGCTAGGAAG+AGG | - | chr5.4:11459172-11459191 | MS.gene010439:intron | 45.0% | |
| TCCTGACTTTGCCATCAACA+AGG | + | chr5.4:11457712-11457731 | None:intergenic | 45.0% | |
| TGACTGAATGGAGACGGAAA+CGG | + | chr5.4:11458282-11458301 | None:intergenic | 45.0% | |
| TGACTGGTGGTAAGAATAGG+GGG | - | chr5.4:11458977-11458996 | MS.gene010439:intron | 45.0% | |
| TGGATGCTTGACAAATTGGG+TGG | - | chr5.4:11457464-11457483 | MS.gene010439:intron | 45.0% | |
| TGGTGACTGGTGGTAAGAAT+AGG | - | chr5.4:11458974-11458993 | MS.gene010439:intron | 45.0% | |
| TGTCAAGCATCCAATGCTTG+GGG | + | chr5.4:11457457-11457476 | None:intergenic | 45.0% | |
| TTCATACCCATGAATCCAGC+TGG | + | chr5.4:11457749-11457768 | None:intergenic | 45.0% | |
| TTCGCAAGATCAGAATGAGC+GGG | + | chr5.4:11457628-11457647 | None:intergenic | 45.0% | |
| TTGTGAATGTAACAGGCGAG+AGG | - | chr5.4:11457401-11457420 | MS.gene010439:intron | 45.0% | |
| ! | ACATGGTTTAATGGGCCGTT+TGG | - | chr5.4:11456983-11457002 | MS.gene010439:CDS | 45.0% |
| ! | AGTGTCATTAGCCCTGATGA+CGG | + | chr5.4:11458887-11458906 | None:intergenic | 45.0% |
| ! | CTGAACGTGGATTGTCTCAA+AGG | + | chr5.4:11459043-11459062 | None:intergenic | 45.0% |
| ! | GTTTAATGGGCCGTTTGGAT+TGG | - | chr5.4:11456988-11457007 | MS.gene010439:CDS | 45.0% |
| !! | CGTTTGCTGTATGACACCAA+AGG | - | chr5.4:11458256-11458275 | MS.gene010439:CDS | 45.0% |
| !! | CTTTGAGACAATCCACGTTC+AGG | - | chr5.4:11459041-11459060 | MS.gene010439:intron | 45.0% |
| !! | TCCTTGTTGATGGCAAAGTC+AGG | - | chr5.4:11457708-11457727 | MS.gene010439:intron | 45.0% |
| !!! | AATAATTGATTAATTTATTT+TGG | - | chr5.4:11457789-11457808 | MS.gene010439:intron | 5.0% |
| ACGGATAGTGCGACCATCAT+AGG | + | chr5.4:11458854-11458873 | None:intergenic | 50.0% | |
| AGACATTCCCTGGACTTGTG+TGG | + | chr5.4:11457605-11457624 | None:intergenic | 50.0% | |
| ATCTGGACCACACAAGTCCA+GGG | - | chr5.4:11457595-11457614 | MS.gene010439:CDS | 50.0% | |
| ATGGCAGTTCAAGCTGTGCA+AGG | - | chr5.4:11458783-11458802 | MS.gene010439:intron | 50.0% | |
| CCATGGGTTTCTCTTCCCAA+GGG | - | chr5.4:11459129-11459148 | MS.gene010439:intron | 50.0% | |
| GACTTGTGTGGTCCAGATGA+GGG | + | chr5.4:11457593-11457612 | None:intergenic | 50.0% | |
| GTCAAGCATCCAATGCTTGG+GGG | + | chr5.4:11457456-11457475 | None:intergenic | 50.0% | |
| GTTTCTCTTCCCAAGGGCAA+GGG | - | chr5.4:11459135-11459154 | MS.gene010439:intron | 50.0% | |
| TAGGCTCCTAAACCCTCATC+TGG | - | chr5.4:11457578-11457597 | MS.gene010439:CDS | 50.0% | |
| TCACGAGGATACCGAAGATC+AGG | + | chr5.4:11458130-11458149 | None:intergenic | 50.0% | |
| TGACACTATCAAGCTGGACC+TGG | - | chr5.4:11458900-11458919 | MS.gene010439:intron | 50.0% | |
| TGCGACCATCATAGGTGTTC+AGG | + | chr5.4:11458846-11458865 | None:intergenic | 50.0% | |
| TGTGGTCCAGATGAGGGTTT+AGG | + | chr5.4:11457587-11457606 | None:intergenic | 50.0% | |
| ! | GTGTCATTAGCCCTGATGAC+GGG | + | chr5.4:11458886-11458905 | None:intergenic | 50.0% |
| ! | TGTCATTAGCCCTGATGACG+GGG | + | chr5.4:11458885-11458904 | None:intergenic | 50.0% |
| AATGAGCGGGAGACATTCCC+TGG | + | chr5.4:11457615-11457634 | None:intergenic | 55.0% | |
| ATCCACGTTCAGGATGCCAC+TGG | - | chr5.4:11459051-11459070 | MS.gene010439:intron | 55.0% | |
| ATGGAGACGGAAACGGCCTT+TGG | + | chr5.4:11458275-11458294 | None:intergenic | 55.0% | |
| CACTATCAAGCTGGACCTGG+AGG | - | chr5.4:11458903-11458922 | MS.gene010439:intron | 55.0% | |
| CATCTGGACCACACAAGTCC+AGG | - | chr5.4:11457594-11457613 | MS.gene010439:CDS | 55.0% | |
| CCCTTGGGAAGAGAAACCCA+TGG | + | chr5.4:11459132-11459151 | None:intergenic | 55.0% | |
| GCCATGGGTTTCTCTTCCCA+AGG | - | chr5.4:11459128-11459147 | MS.gene010439:intron | 55.0% | |
| GGACTTGTGTGGTCCAGATG+AGG | + | chr5.4:11457594-11457613 | None:intergenic | 55.0% | |
| GGTTTCTCTTCCCAAGGGCA+AGG | - | chr5.4:11459134-11459153 | MS.gene010439:intron | 55.0% | |
| TGGCAAGGGGACAAAGCCAT+GGG | - | chr5.4:11459113-11459132 | MS.gene010439:intron | 55.0% | |
| TTACCCAGACCCCGTCATCA+GGG | - | chr5.4:11458873-11458892 | MS.gene010439:intron | 55.0% | |
| TTGGCAAGGGGACAAAGCCA+TGG | - | chr5.4:11459112-11459131 | MS.gene010439:intron | 55.0% | |
| ! | GGTAAGAATAGGGGGCGTGT+TGG | - | chr5.4:11458985-11459004 | MS.gene010439:intron | 55.0% |
| !! | TGATGACGGGGTCTGGGTAA+CGG | + | chr5.4:11458873-11458892 | None:intergenic | 55.0% |
| GACCAGTGGCATCCTGAACG+TGG | + | chr5.4:11459056-11459075 | None:intergenic | 60.0% | |
| GGCTCAATGCCCCCAAGCAT+TGG | - | chr5.4:11457444-11457463 | MS.gene010439:intron | 60.0% | |
| GTTACCCAGACCCCGTCATC+AGG | - | chr5.4:11458872-11458891 | MS.gene010439:intron | 60.0% | |
| !! | TAGCCCTGATGACGGGGTCT+GGG | + | chr5.4:11458879-11458898 | None:intergenic | 60.0% |
| !! | TTAGCCCTGATGACGGGGTC+TGG | + | chr5.4:11458880-11458899 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 11456659 | 11459227 | 11456659 | ID=MS.gene010439 |
| chr5.4 | mRNA | 11456659 | 11459227 | 11456659 | ID=MS.gene010439.t1;Parent=MS.gene010439 |
| chr5.4 | exon | 11459225 | 11459227 | 11459225 | ID=MS.gene010439.t1.exon1;Parent=MS.gene010439.t1 |
| chr5.4 | CDS | 11459225 | 11459227 | 11459225 | ID=cds.MS.gene010439.t1;Parent=MS.gene010439.t1 |
| chr5.4 | exon | 11458393 | 11458470 | 11458393 | ID=MS.gene010439.t1.exon2;Parent=MS.gene010439.t1 |
| chr5.4 | CDS | 11458393 | 11458470 | 11458393 | ID=cds.MS.gene010439.t1;Parent=MS.gene010439.t1 |
| chr5.4 | exon | 11458125 | 11458305 | 11458125 | ID=MS.gene010439.t1.exon3;Parent=MS.gene010439.t1 |
| chr5.4 | CDS | 11458125 | 11458305 | 11458125 | ID=cds.MS.gene010439.t1;Parent=MS.gene010439.t1 |
| chr5.4 | exon | 11457568 | 11457665 | 11457568 | ID=MS.gene010439.t1.exon4;Parent=MS.gene010439.t1 |
| chr5.4 | CDS | 11457568 | 11457665 | 11457568 | ID=cds.MS.gene010439.t1;Parent=MS.gene010439.t1 |
| chr5.4 | exon | 11456659 | 11457096 | 11456659 | ID=MS.gene010439.t1.exon5;Parent=MS.gene010439.t1 |
| chr5.4 | CDS | 11456659 | 11457096 | 11456659 | ID=cds.MS.gene010439.t1;Parent=MS.gene010439.t1 |
| Gene Sequence |
| Protein sequence |
