Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035447.t1 | XP_003611879.1 | 100 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 9.60E-148 | 532.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035447.t1 | P49204 | 90.5 | 262 | 25 | 0 | 1 | 262 | 1 | 262 | 6.3e-140 | 498.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035447.t1 | B7FL29 | 100.0 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 6.9e-148 | 532.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene035447 | MS.gene010439 | PPI |
| MS.gene035447 | MS.gene38870 | PPI |
| MS.gene047717 | MS.gene035447 | PPI |
| MS.gene53517 | MS.gene035447 | PPI |
| MS.gene82426 | MS.gene035447 | PPI |
| MS.gene43012 | MS.gene035447 | PPI |
| MS.gene95672 | MS.gene035447 | PPI |
| MS.gene023799 | MS.gene035447 | PPI |
| MS.gene42236 | MS.gene035447 | PPI |
| MS.gene035447 | MS.gene032440 | PPI |
| MS.gene38870 | MS.gene035447 | PPI |
| MS.gene27648 | MS.gene035447 | PPI |
| MS.gene069005 | MS.gene035447 | PPI |
| MS.gene035447 | MS.gene83444 | PPI |
| MS.gene035447 | MS.gene071029 | PPI |
| MS.gene035447 | MS.gene073888 | PPI |
| MS.gene035447 | MS.gene053443 | PPI |
| MS.gene74487 | MS.gene035447 | PPI |
| MS.gene59369 | MS.gene035447 | PPI |
| MS.gene035447 | MS.gene52173 | PPI |
| MS.gene035447 | MS.gene72768 | PPI |
| MS.gene071029 | MS.gene035447 | PPI |
| MS.gene028153 | MS.gene035447 | PPI |
| MS.gene035447 | MS.gene99501 | PPI |
| MS.gene041181 | MS.gene035447 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035447.t1 | MTR_5g018940 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
| MS.gene035447.t1 | MTR_5g018940 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
| MS.gene035447.t1 | MTR_8g052030 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
| MS.gene035447.t1 | MTR_4g014590 | 95.094 | 265 | 12 | 1 | 1 | 265 | 1 | 264 | 0.0 | 518 |
| MS.gene035447.t1 | MTR_7g069950 | 94.510 | 255 | 14 | 0 | 1 | 255 | 1 | 255 | 0.0 | 501 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene035447.t1 | AT5G07090 | 90.458 | 262 | 25 | 0 | 1 | 262 | 1 | 262 | 0.0 | 506 |
| MS.gene035447.t1 | AT2G17360 | 90.769 | 260 | 24 | 0 | 1 | 260 | 1 | 260 | 0.0 | 504 |
| MS.gene035447.t1 | AT5G58420 | 90.076 | 262 | 26 | 0 | 1 | 262 | 1 | 262 | 0.0 | 503 |
| MS.gene035447.t1 | AT5G07090 | 89.754 | 244 | 25 | 0 | 19 | 262 | 1 | 244 | 2.41e-169 | 468 |
| MS.gene035447.t1 | AT5G07090 | 89.754 | 244 | 25 | 0 | 19 | 262 | 1 | 244 | 2.41e-169 | 468 |
| MS.gene035447.t1 | AT2G17360 | 91.160 | 181 | 16 | 0 | 1 | 181 | 1 | 181 | 2.61e-125 | 354 |
Find 85 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTGGATGCTTGACAAAT+TGG | 0.267158 | 8.2:+51636649 | MS.gene035447:CDS |
| GGGAATGTCGTTATGGTTAC+TGG | 0.296804 | 8.2:+51638560 | MS.gene035447:CDS |
| TTCCTCCAGATCCAGCTTGA+TGG | 0.308982 | 8.2:-51638504 | None:intergenic |
| AAGGTTCGTTCAGTGCAATT+TGG | 0.315956 | 8.2:+51638401 | MS.gene035447:CDS |
| CGTCAGGACCACACAAATCT+AGG | 0.320235 | 8.2:+51636778 | MS.gene035447:CDS |
| TGTGGTCCTGACGAGGGTTT+TGG | 0.324202 | 8.2:-51636768 | None:intergenic |
| TTAGCCCTGATGACGGGGTC+TGG | 0.336130 | 8.2:-51638476 | None:intergenic |
| TTGGTCAATGTGTTTACTAT+TGG | 0.337974 | 8.2:+51638692 | MS.gene035447:CDS |
| AGGTTCGTTCAGTGCAATTT+GGG | 0.356395 | 8.2:+51638402 | MS.gene035447:CDS |
| GCTACCCAGACCCCGTCATC+AGG | 0.361624 | 8.2:+51638471 | MS.gene035447:CDS |
| GGTTACTGGTGGTAAGAATA+GGG | 0.371328 | 8.2:+51638574 | MS.gene035447:CDS |
| TGGTTACTGGTGGTAAGAAT+AGG | 0.371768 | 8.2:+51638573 | MS.gene035447:CDS |
| TTGTCAAGCATCCAATGCTT+GGG | 0.386706 | 8.2:-51636644 | None:intergenic |
| ATTTCATCAAATTTGATGTT+GGG | 0.389801 | 8.2:+51638540 | MS.gene035447:CDS |
| GACTTATCCAGCTGGATTCA+TGG | 0.391447 | 8.2:+51636923 | MS.gene035447:CDS |
| TGACACCATCAAGCTGGATC+TGG | 0.413790 | 8.2:+51638499 | MS.gene035447:CDS |
| TCATGAGTTTGCAACTCGTT+TGG | 0.419784 | 8.2:+51638673 | MS.gene035447:CDS |
| GATTTCATCAAATTTGATGT+TGG | 0.427275 | 8.2:+51638539 | MS.gene035447:CDS |
| CCATCGTAGGTGTTAAGGTA+TGG | 0.433305 | 8.2:-51638437 | None:intergenic |
| TACGACCATCGTAGGTGTTA+AGG | 0.436757 | 8.2:-51638442 | None:intergenic |
| TTTGTCAAGCATCCAATGCT+TGG | 0.437860 | 8.2:-51636645 | None:intergenic |
| TGATGTTGGGAATGTCGTTA+TGG | 0.448181 | 8.2:+51638553 | MS.gene035447:CDS |
| CATTGGATGCTTGACAAATT+GGG | 0.462746 | 8.2:+51636650 | MS.gene035447:CDS |
| CAAGAACAGAGAGAAACATA+AGG | 0.466803 | 8.2:+51638613 | MS.gene035447:CDS |
| GTGTCATTAGCCCTGATGAC+GGG | 0.468677 | 8.2:-51638482 | None:intergenic |
| TAGCCCTGATGACGGGGTCT+GGG | 0.470117 | 8.2:-51638475 | None:intergenic |
| GTGGAGACGGAAGCGACCTT+TGG | 0.470157 | 8.2:-51637857 | None:intergenic |
| TGATGACGGGGTCTGGGTAG+CGG | 0.470305 | 8.2:-51638469 | None:intergenic |
| GGTATCTCTTCCGAAGGGTA+AGG | 0.470979 | 8.2:+51638733 | MS.gene035447:CDS |
| TGAGAATAGCAATGACTTCA+CGG | 0.475445 | 8.2:-51636857 | None:intergenic |
| CAACGACATGTCCTTGTTGA+CGG | 0.478258 | 8.2:+51636882 | MS.gene035447:CDS |
| TTACAGTCATTGAGGAAGCT+AGG | 0.485211 | 8.2:+51638765 | MS.gene035447:CDS |
| AGCTTAATACCCTTACCCTT+CGG | 0.489299 | 8.2:-51638743 | None:intergenic |
| GGCTAATGACACCATCAAGC+TGG | 0.509237 | 8.2:+51638493 | MS.gene035447:CDS |
| TCCTTGTTGACGGTAAAGTC+AGG | 0.512114 | 8.2:+51636892 | MS.gene035447:CDS |
| TAGGCTCCAAAACCCTCGTC+AGG | 0.512287 | 8.2:+51636762 | MS.gene035447:intron |
| ACTTATCCAGCTGGATTCAT+GGG | 0.514100 | 8.2:+51636924 | MS.gene035447:CDS |
| TTCATACCCATGAATCCAGC+TGG | 0.529071 | 8.2:-51636930 | None:intergenic |
| CAATGTGTTTACTATTGGCA+AGG | 0.534517 | 8.2:+51638697 | MS.gene035447:CDS |
| TTGGCAAGGGCACAAAGCCA+TGG | 0.537474 | 8.2:+51638711 | MS.gene035447:CDS |
| CATCTCTGACTGAGTGGAGA+CGG | 0.537807 | 8.2:-51637870 | None:intergenic |
| ATTCGAGACAATCCACGTTC+AGG | 0.539354 | 8.2:+51638640 | MS.gene035447:CDS |
| CATCGTAGGTGTTAAGGTAT+GGG | 0.540713 | 8.2:-51638436 | None:intergenic |
| GGTAAGAATAGGGGACGTGT+TGG | 0.541026 | 8.2:+51638584 | MS.gene035447:CDS |
| TCAGTGCAATTTGGGCAGAA+AGG | 0.544106 | 8.2:+51638410 | MS.gene035447:CDS |
| AGATTTGTGTGGTCCTGACG+AGG | 0.555265 | 8.2:-51636775 | None:intergenic |
| TCATTGAGGAAGCTAGGAAG+AGG | 0.556083 | 8.2:+51638771 | MS.gene035447:CDS |
| CACCATCAAGCTGGATCTGG+AGG | 0.557236 | 8.2:+51638502 | MS.gene035447:CDS |
| TATTAAGCTTACAGTCATTG+AGG | 0.561603 | 8.2:+51638757 | MS.gene035447:CDS |
| TGTCAAGCATCCAATGCTTG+GGG | 0.568821 | 8.2:-51636643 | None:intergenic |
| AGCTAGGAAGAGGGCTGCTG+CGG | 0.574575 | 8.2:+51638781 | MS.gene035447:CDS |
| GCCATGGGTATCTCTTCCGA+AGG | 0.583131 | 8.2:+51638727 | MS.gene035447:CDS |
| AAGAACAGAGAGAAACATAA+GGG | 0.583620 | 8.2:+51638614 | MS.gene035447:CDS |
| TTTCGCAAAATCAGAATGAG+TGG | 0.587385 | 8.2:-51636810 | None:intergenic |
| GTCAGGACCACACAAATCTA+GGG | 0.588053 | 8.2:+51636779 | MS.gene035447:CDS |
| GATTGAAGAAGCATTTGAAG+AGG | 0.590583 | 8.2:+51636612 | MS.gene035447:CDS |
| GATTTGTGTGGTCCTGACGA+GGG | 0.594605 | 8.2:-51636774 | None:intergenic |
| GTATCTCTTCCGAAGGGTAA+GGG | 0.600286 | 8.2:+51638734 | MS.gene035447:CDS |
| TGGCAAGGGCACAAAGCCAT+GGG | 0.601941 | 8.2:+51638712 | MS.gene035447:CDS |
| TCCTGACTTTACCGTCAACA+AGG | 0.605928 | 8.2:-51636893 | None:intergenic |
| AGTCAGAGATGACGAGGCAA+AGG | 0.606178 | 8.2:+51637882 | MS.gene035447:CDS |
| CTACCCAGACCCCGTCATCA+GGG | 0.613237 | 8.2:+51638472 | MS.gene035447:CDS |
| AATGTGTTTACTATTGGCAA+GGG | 0.614045 | 8.2:+51638698 | MS.gene035447:CDS |
| CCCTTCGGAAGAGATACCCA+TGG | 0.615095 | 8.2:-51638728 | None:intergenic |
| ATCCACGTTCAGGATGCCAC+TGG | 0.616221 | 8.2:+51638650 | MS.gene035447:CDS |
| GACCAGTGGCATCCTGAACG+TGG | 0.616751 | 8.2:-51638652 | None:intergenic |
| CCTCGTCATCTCTGACTGAG+TGG | 0.618913 | 8.2:-51637876 | None:intergenic |
| ACTGACAAGACTTATCCAGC+TGG | 0.621794 | 8.2:+51636915 | MS.gene035447:CDS |
| CATTGAGGAAGCTAGGAAGA+GGG | 0.631407 | 8.2:+51638772 | MS.gene035447:CDS |
| CCACTCAGTCAGAGATGACG+AGG | 0.634643 | 8.2:+51637876 | MS.gene035447:CDS |
| GGTGTCATTAGCCCTGATGA+CGG | 0.635671 | 8.2:-51638483 | None:intergenic |
| CTTTGGTGTCATAAAGCAGA+CGG | 0.635938 | 8.2:-51637840 | None:intergenic |
| TGTCATTAGCCCTGATGACG+GGG | 0.637880 | 8.2:-51638481 | None:intergenic |
| GTTACTGGTGGTAAGAATAG+GGG | 0.638404 | 8.2:+51638575 | MS.gene035447:CDS |
| ATGTGAATGTAACAGGCTAG+AGG | 0.650282 | 8.2:+51636590 | MS.gene035447:intron |
| GTCAAGCATCCAATGCTTGG+GGG | 0.650283 | 8.2:-51636642 | None:intergenic |
| ATGGCAGTTCAAGCTCTGCA+AGG | 0.650875 | 8.2:+51638382 | MS.gene035447:intron |
| AGACATTCCCTAGATTTGTG+TGG | 0.654592 | 8.2:-51636786 | None:intergenic |
| CGTCTGCTTTATGACACCAA+AGG | 0.666188 | 8.2:+51637841 | MS.gene035447:CDS |
| CCATGGGTATCTCTTCCGAA+GGG | 0.680197 | 8.2:+51638728 | MS.gene035447:CDS |
| GCGGATTGTACGACCATCGT+AGG | 0.682552 | 8.2:-51638450 | None:intergenic |
| TGGATGCTTGACAAATTGGG+TGG | 0.687057 | 8.2:+51636653 | MS.gene035447:CDS |
| CCATACCTTAACACCTACGA+TGG | 0.694828 | 8.2:+51638437 | MS.gene035447:CDS |
| AGTTGCAAACTCATGACCAG+TGG | 0.709942 | 8.2:-51638666 | None:intergenic |
| AATGTCGTTATGGTTACTGG+TGG | 0.727160 | 8.2:+51638563 | MS.gene035447:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAGTTTTTATGTTTATTTAT+AGG | + | chr8.2:51637381-51637400 | MS.gene035447:intron | 10.0% |
| !! | ATAAAAATGGTATGATTAAA+CGG | - | chr8.2:51638266-51638285 | None:intergenic | 15.0% |
| !! | ATACTATACATAAATCTTAT+CGG | - | chr8.2:51638027-51638046 | None:intergenic | 15.0% |
| !! | CATATATATCAAACAAAATA+AGG | - | chr8.2:51636573-51636592 | None:intergenic | 15.0% |
| !! | CTATAATTCATATAATAACA+TGG | - | chr8.2:51638291-51638310 | None:intergenic | 15.0% |
| !! | TAATAACATGGATATAAAAA+TGG | - | chr8.2:51638279-51638298 | None:intergenic | 15.0% |
| !! | ATTTCATCAAATTTGATGTT+GGG | + | chr8.2:51638540-51638559 | MS.gene035447:CDS | 20.0% |
| !! | TTGTATAATATTCTGTATTC+TGG | + | chr8.2:51637695-51637714 | MS.gene035447:intron | 20.0% |
| !!! | ATTAAGTTGTTTATTCAAAC+AGG | - | chr8.2:51636518-51636537 | None:intergenic | 20.0% |
| !!! | TTAAGTTGTTTATTCAAACA+GGG | - | chr8.2:51636517-51636536 | None:intergenic | 20.0% |
| ! | GATATATATGTGAATGTAAC+AGG | + | chr8.2:51636583-51636602 | MS.gene035447:intron | 25.0% |
| ! | GATTTCATCAAATTTGATGT+TGG | + | chr8.2:51638539-51638558 | MS.gene035447:CDS | 25.0% |
| ! | TATAGTATTTAGTTATGCGT+CGG | + | chr8.2:51638039-51638058 | MS.gene035447:intron | 25.0% |
| !! | AAACAAAATAAGGACTTGTT+TGG | - | chr8.2:51636563-51636582 | None:intergenic | 25.0% |
| !! | ACTTTTGATGTATTATAGCT+GGG | + | chr8.2:51637080-51637099 | MS.gene035447:intron | 25.0% |
| !! | GATTGATGTGATTTTTGTAT+AGG | + | chr8.2:51636743-51636762 | MS.gene035447:intron | 25.0% |
| AACATTCATGATATGAAGCA+CGG | - | chr8.2:51638116-51638135 | None:intergenic | 30.0% | |
| AAGAACAGAGAGAAACATAA+GGG | + | chr8.2:51638614-51638633 | MS.gene035447:CDS | 30.0% | |
| AATGTGTTTACTATTGGCAA+GGG | + | chr8.2:51638698-51638717 | MS.gene035447:CDS | 30.0% | |
| ATATTTGTGTAGAGTCTTGA+AGG | + | chr8.2:51637120-51637139 | MS.gene035447:intron | 30.0% | |
| ATGAAAAACAGTGCAAATAC+TGG | - | chr8.2:51637622-51637641 | None:intergenic | 30.0% | |
| ATTCCATTATTAAGACCTGT+TGG | - | chr8.2:51637532-51637551 | None:intergenic | 30.0% | |
| CAATTATTCTAGACGAAGAT+CGG | - | chr8.2:51636961-51636980 | None:intergenic | 30.0% | |
| CTGCTTAACATAAAATTCAG+TGG | - | chr8.2:51636430-51636449 | None:intergenic | 30.0% | |
| GATATTCAGTAAGCATATGA+AGG | - | chr8.2:51637910-51637929 | None:intergenic | 30.0% | |
| TAACCAACAGGTCTTAATAA+TGG | + | chr8.2:51637526-51637545 | MS.gene035447:intron | 30.0% | |
| TACATAAATCTTATCGGTGT+CGG | - | chr8.2:51638021-51638040 | None:intergenic | 30.0% | |
| TATTAAGCTTACAGTCATTG+AGG | + | chr8.2:51638757-51638776 | MS.gene035447:CDS | 30.0% | |
| TATTTGTGTAGAGTCTTGAA+GGG | + | chr8.2:51637121-51637140 | MS.gene035447:intron | 30.0% | |
| TTGGTCAATGTGTTTACTAT+TGG | + | chr8.2:51638692-51638711 | MS.gene035447:CDS | 30.0% | |
| ! | GACTTTTGATGTATTATAGC+TGG | + | chr8.2:51637079-51637098 | MS.gene035447:intron | 30.0% |
| ! | GTTTTGCATAAGCTCAAAAT+TGG | - | chr8.2:51637344-51637363 | None:intergenic | 30.0% |
| !!! | CAGGATCTAGTTTTGTTTTT+TGG | + | chr8.2:51637567-51637586 | MS.gene035447:intron | 30.0% |
| AGATCCTGTAATAAAACCGT+GGG | - | chr8.2:51637555-51637574 | None:intergenic | 35.0% | |
| CAAGAACAGAGAGAAACATA+AGG | + | chr8.2:51638613-51638632 | MS.gene035447:CDS | 35.0% | |
| CAATGTGTTTACTATTGGCA+AGG | + | chr8.2:51638697-51638716 | MS.gene035447:CDS | 35.0% | |
| CATTGGATGCTTGACAAATT+GGG | + | chr8.2:51636650-51636669 | MS.gene035447:CDS | 35.0% | |
| GTTCTCTGACTCATTTGATT+TGG | + | chr8.2:51637725-51637744 | MS.gene035447:intron | 35.0% | |
| TAGATCCTGTAATAAAACCG+TGG | - | chr8.2:51637556-51637575 | None:intergenic | 35.0% | |
| TCCAAATAAGCATAACCAAC+AGG | + | chr8.2:51637514-51637533 | MS.gene035447:intron | 35.0% | |
| TGAGAATAGCAATGACTTCA+CGG | - | chr8.2:51636860-51636879 | None:intergenic | 35.0% | |
| TTCCTTGTATGTGATGTACA+TGG | + | chr8.2:51638363-51638382 | MS.gene035447:intron | 35.0% | |
| TTTCGCAAAATCAGAATGAG+TGG | - | chr8.2:51636813-51636832 | None:intergenic | 35.0% | |
| TTTGCGCTGTTAATATGCTT+TGG | + | chr8.2:51636991-51637010 | MS.gene035447:intron | 35.0% | |
| ! | ACCTGTTGGTTATGCTTATT+TGG | - | chr8.2:51637518-51637537 | None:intergenic | 35.0% |
| ! | GTCTTAATAATGGAATCCCA+CGG | + | chr8.2:51637536-51637555 | MS.gene035447:intron | 35.0% |
| !! | ACGAAGCACTGATACTTATA+CGG | + | chr8.2:51637984-51638003 | MS.gene035447:intron | 35.0% |
| !! | GATTGAAGAAGCATTTGAAG+AGG | + | chr8.2:51636612-51636631 | MS.gene035447:CDS | 35.0% |
| !! | TTGCACTGTTTTTCATGTCT+GGG | + | chr8.2:51637626-51637645 | MS.gene035447:intron | 35.0% |
| !! | TTTGCACTGTTTTTCATGTC+TGG | + | chr8.2:51637625-51637644 | MS.gene035447:intron | 35.0% |
| !!! | GGAAGCTCTCATTTGTTTTA+GGG | - | chr8.2:51637822-51637841 | None:intergenic | 35.0% |
| AAGGTTCGTTCAGTGCAATT+TGG | + | chr8.2:51638401-51638420 | MS.gene035447:CDS | 40.0% | |
| AATGTCGTTATGGTTACTGG+TGG | + | chr8.2:51638563-51638582 | MS.gene035447:CDS | 40.0% | |
| ACTTATCCAGCTGGATTCAT+GGG | + | chr8.2:51636924-51636943 | MS.gene035447:CDS | 40.0% | |
| AGACATTCCCTAGATTTGTG+TGG | - | chr8.2:51636789-51636808 | None:intergenic | 40.0% | |
| AGCTTAATACCCTTACCCTT+CGG | - | chr8.2:51638746-51638765 | None:intergenic | 40.0% | |
| AGGTTCGTTCAGTGCAATTT+GGG | + | chr8.2:51638402-51638421 | MS.gene035447:CDS | 40.0% | |
| ATGTGAATGTAACAGGCTAG+AGG | + | chr8.2:51636590-51636609 | MS.gene035447:intron | 40.0% | |
| CATCGTAGGTGTTAAGGTAT+GGG | - | chr8.2:51638439-51638458 | None:intergenic | 40.0% | |
| GCATTGGATGCTTGACAAAT+TGG | + | chr8.2:51636649-51636668 | MS.gene035447:CDS | 40.0% | |
| GGTTACTGGTGGTAAGAATA+GGG | + | chr8.2:51638574-51638593 | MS.gene035447:CDS | 40.0% | |
| GTATAAGTATCAGTGCTTCG+TGG | - | chr8.2:51637985-51638004 | None:intergenic | 40.0% | |
| GTTACTGGTGGTAAGAATAG+GGG | + | chr8.2:51638575-51638594 | MS.gene035447:CDS | 40.0% | |
| TAGGGATTGAGACAACATCT+GGG | - | chr8.2:51637804-51637823 | None:intergenic | 40.0% | |
| TCATGAGTTTGCAACTCGTT+TGG | + | chr8.2:51638673-51638692 | MS.gene035447:CDS | 40.0% | |
| TGATGTTGGGAATGTCGTTA+TGG | + | chr8.2:51638553-51638572 | MS.gene035447:CDS | 40.0% | |
| TGCCATGTACATCACATACA+AGG | - | chr8.2:51638368-51638387 | None:intergenic | 40.0% | |
| TGCTCAGTTTAGGCAAGTTT+CGG | - | chr8.2:51638080-51638099 | None:intergenic | 40.0% | |
| TGGTTACTGGTGGTAAGAAT+AGG | + | chr8.2:51638573-51638592 | MS.gene035447:CDS | 40.0% | |
| TTACAGTCATTGAGGAAGCT+AGG | + | chr8.2:51638765-51638784 | MS.gene035447:CDS | 40.0% | |
| TTAGGGATTGAGACAACATC+TGG | - | chr8.2:51637805-51637824 | None:intergenic | 40.0% | |
| TTGTCAAGCATCCAATGCTT+GGG | - | chr8.2:51636647-51636666 | None:intergenic | 40.0% | |
| TTTGTCAAGCATCCAATGCT+TGG | - | chr8.2:51636648-51636667 | None:intergenic | 40.0% | |
| !! | CGGAAGCTCTCATTTGTTTT+AGG | - | chr8.2:51637823-51637842 | None:intergenic | 40.0% |
| !! | CTTTGGTGTCATAAAGCAGA+CGG | - | chr8.2:51637843-51637862 | None:intergenic | 40.0% |
| !! | TGACTCATTTGATTTGGCTG+TGG | + | chr8.2:51637731-51637750 | MS.gene035447:intron | 40.0% |
| !!! | GAATCCCACGGTTTTATTAC+AGG | + | chr8.2:51637548-51637567 | MS.gene035447:intron | 40.0% |
| ACTGACAAGACTTATCCAGC+TGG | + | chr8.2:51636915-51636934 | MS.gene035447:CDS | 45.0% | |
| AGTTGCAAACTCATGACCAG+TGG | - | chr8.2:51638669-51638688 | None:intergenic | 45.0% | |
| ATTCGAGACAATCCACGTTC+AGG | + | chr8.2:51638640-51638659 | MS.gene035447:CDS | 45.0% | |
| CAACGACATGTCCTTGTTGA+CGG | + | chr8.2:51636882-51636901 | MS.gene035447:CDS | 45.0% | |
| CATTGAGGAAGCTAGGAAGA+GGG | + | chr8.2:51638772-51638791 | MS.gene035447:CDS | 45.0% | |
| CCATACCTTAACACCTACGA+TGG | + | chr8.2:51638437-51638456 | MS.gene035447:CDS | 45.0% | |
| CCATCGTAGGTGTTAAGGTA+TGG | - | chr8.2:51638440-51638459 | None:intergenic | 45.0% | |
| CGTCTGCTTTATGACACCAA+AGG | + | chr8.2:51637841-51637860 | MS.gene035447:CDS | 45.0% | |
| CTTGAAGGGCTGTTTGGATT+AGG | + | chr8.2:51637135-51637154 | MS.gene035447:intron | 45.0% | |
| GACTTATCCAGCTGGATTCA+TGG | + | chr8.2:51636923-51636942 | MS.gene035447:CDS | 45.0% | |
| GATATGAAGCACGGATACCA+CGG | - | chr8.2:51638107-51638126 | None:intergenic | 45.0% | |
| GGGAATGTCGTTATGGTTAC+TGG | + | chr8.2:51638560-51638579 | MS.gene035447:CDS | 45.0% | |
| GTATCTCTTCCGAAGGGTAA+GGG | + | chr8.2:51638734-51638753 | MS.gene035447:CDS | 45.0% | |
| GTCAGGACCACACAAATCTA+GGG | + | chr8.2:51636779-51636798 | MS.gene035447:CDS | 45.0% | |
| TACGACCATCGTAGGTGTTA+AGG | - | chr8.2:51638445-51638464 | None:intergenic | 45.0% | |
| TAGAGTCTTGAAGGGCTGTT+TGG | + | chr8.2:51637129-51637148 | MS.gene035447:intron | 45.0% | |
| TCAGTGCAATTTGGGCAGAA+AGG | + | chr8.2:51638410-51638429 | MS.gene035447:CDS | 45.0% | |
| TCATTGAGGAAGCTAGGAAG+AGG | + | chr8.2:51638771-51638790 | MS.gene035447:CDS | 45.0% | |
| TCCTGACTTTACCGTCAACA+AGG | - | chr8.2:51636896-51636915 | None:intergenic | 45.0% | |
| TCCTTGTTGACGGTAAAGTC+AGG | + | chr8.2:51636892-51636911 | MS.gene035447:CDS | 45.0% | |
| TGGATGCTTGACAAATTGGG+TGG | + | chr8.2:51636653-51636672 | MS.gene035447:CDS | 45.0% | |
| TGTCAAGCATCCAATGCTTG+GGG | - | chr8.2:51636646-51636665 | None:intergenic | 45.0% | |
| TTCATACCCATGAATCCAGC+TGG | - | chr8.2:51636933-51636952 | None:intergenic | 45.0% | |
| ! | GTTTAGGCAAGTTTCGGTGT+TGG | - | chr8.2:51638074-51638093 | None:intergenic | 45.0% |
| !!! | ATTTTTTTTTTTTATTGTTA+AGG | + | chr8.2:51637041-51637060 | MS.gene035447:intron | 5.0% |
| AGATTTGTGTGGTCCTGACG+AGG | - | chr8.2:51636778-51636797 | None:intergenic | 50.0% | |
| AGTCAGAGATGACGAGGCAA+AGG | + | chr8.2:51637882-51637901 | MS.gene035447:CDS | 50.0% | |
| ATGGCAGTTCAAGCTCTGCA+AGG | + | chr8.2:51638382-51638401 | MS.gene035447:intron | 50.0% | |
| CATCTCTGACTGAGTGGAGA+CGG | - | chr8.2:51637873-51637892 | None:intergenic | 50.0% | |
| CCATGGGTATCTCTTCCGAA+GGG | + | chr8.2:51638728-51638747 | MS.gene035447:CDS | 50.0% | |
| CGTCAGGACCACACAAATCT+AGG | + | chr8.2:51636778-51636797 | MS.gene035447:CDS | 50.0% | |
| GATTTGTGTGGTCCTGACGA+GGG | - | chr8.2:51636777-51636796 | None:intergenic | 50.0% | |
| GGCTAATGACACCATCAAGC+TGG | + | chr8.2:51638493-51638512 | MS.gene035447:CDS | 50.0% | |
| GGTAAGAATAGGGGACGTGT+TGG | + | chr8.2:51638584-51638603 | MS.gene035447:CDS | 50.0% | |
| GGTATCTCTTCCGAAGGGTA+AGG | + | chr8.2:51638733-51638752 | MS.gene035447:CDS | 50.0% | |
| GTCAAGCATCCAATGCTTGG+GGG | - | chr8.2:51636645-51636664 | None:intergenic | 50.0% | |
| TGACACCATCAAGCTGGATC+TGG | + | chr8.2:51638499-51638518 | MS.gene035447:CDS | 50.0% | |
| TTCCTCCAGATCCAGCTTGA+TGG | - | chr8.2:51638507-51638526 | None:intergenic | 50.0% | |
| ! | GTGTCATTAGCCCTGATGAC+GGG | - | chr8.2:51638485-51638504 | None:intergenic | 50.0% |
| ! | TGTCATTAGCCCTGATGACG+GGG | - | chr8.2:51638484-51638503 | None:intergenic | 50.0% |
| !! | GGTGTCATTAGCCCTGATGA+CGG | - | chr8.2:51638486-51638505 | None:intergenic | 50.0% |
| ATCCACGTTCAGGATGCCAC+TGG | + | chr8.2:51638650-51638669 | MS.gene035447:CDS | 55.0% | |
| CACCATCAAGCTGGATCTGG+AGG | + | chr8.2:51638502-51638521 | MS.gene035447:CDS | 55.0% | |
| CCACGGACACTGCTCAGTTT+AGG | - | chr8.2:51638090-51638109 | None:intergenic | 55.0% | |
| CCACTCAGTCAGAGATGACG+AGG | + | chr8.2:51637876-51637895 | MS.gene035447:CDS | 55.0% | |
| CCCTTCGGAAGAGATACCCA+TGG | - | chr8.2:51638731-51638750 | None:intergenic | 55.0% | |
| CCTAAACTGAGCAGTGTCCG+TGG | + | chr8.2:51638087-51638106 | MS.gene035447:intron | 55.0% | |
| CCTCGTCATCTCTGACTGAG+TGG | - | chr8.2:51637879-51637898 | None:intergenic | 55.0% | |
| GCCATGGGTATCTCTTCCGA+AGG | + | chr8.2:51638727-51638746 | MS.gene035447:CDS | 55.0% | |
| TAGGCTCCAAAACCCTCGTC+AGG | + | chr8.2:51636762-51636781 | MS.gene035447:intron | 55.0% | |
| ! | GCGGATTGTACGACCATCGT+AGG | - | chr8.2:51638453-51638472 | None:intergenic | 55.0% |
| ! | TGGCAAGGGCACAAAGCCAT+GGG | + | chr8.2:51638712-51638731 | MS.gene035447:CDS | 55.0% |
| ! | TGTGGTCCTGACGAGGGTTT+TGG | - | chr8.2:51636771-51636790 | None:intergenic | 55.0% |
| ! | TTGGCAAGGGCACAAAGCCA+TGG | + | chr8.2:51638711-51638730 | MS.gene035447:CDS | 55.0% |
| AGCTAGGAAGAGGGCTGCTG+CGG | + | chr8.2:51638781-51638800 | MS.gene035447:CDS | 60.0% | |
| CTACCCAGACCCCGTCATCA+GGG | + | chr8.2:51638472-51638491 | MS.gene035447:CDS | 60.0% | |
| GACCAGTGGCATCCTGAACG+TGG | - | chr8.2:51638655-51638674 | None:intergenic | 60.0% | |
| GGCTCAATGCCCCCAAGCAT+TGG | + | chr8.2:51636633-51636652 | MS.gene035447:CDS | 60.0% | |
| GTGGAGACGGAAGCGACCTT+TGG | - | chr8.2:51637860-51637879 | None:intergenic | 60.0% | |
| !! | TAGCCCTGATGACGGGGTCT+GGG | - | chr8.2:51638478-51638497 | None:intergenic | 60.0% |
| !! | TGATGACGGGGTCTGGGTAG+CGG | - | chr8.2:51638472-51638491 | None:intergenic | 60.0% |
| !! | TTAGCCCTGATGACGGGGTC+TGG | - | chr8.2:51638479-51638498 | None:intergenic | 60.0% |
| GCTACCCAGACCCCGTCATC+AGG | + | chr8.2:51638471-51638490 | MS.gene035447:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 51636348 | 51638826 | 51636348 | ID=MS.gene035447 |
| chr8.2 | mRNA | 51636348 | 51638826 | 51636348 | ID=MS.gene035447.t1;Parent=MS.gene035447 |
| chr8.2 | exon | 51636348 | 51636350 | 51636348 | ID=MS.gene035447.t1.exon1;Parent=MS.gene035447.t1 |
| chr8.2 | CDS | 51636348 | 51636350 | 51636348 | ID=cds.MS.gene035447.t1;Parent=MS.gene035447.t1 |
| chr8.2 | exon | 51636605 | 51636682 | 51636605 | ID=MS.gene035447.t1.exon2;Parent=MS.gene035447.t1 |
| chr8.2 | CDS | 51636605 | 51636682 | 51636605 | ID=cds.MS.gene035447.t1;Parent=MS.gene035447.t1 |
| chr8.2 | exon | 51636765 | 51636945 | 51636765 | ID=MS.gene035447.t1.exon3;Parent=MS.gene035447.t1 |
| chr8.2 | CDS | 51636765 | 51636945 | 51636765 | ID=cds.MS.gene035447.t1;Parent=MS.gene035447.t1 |
| chr8.2 | exon | 51637806 | 51637903 | 51637806 | ID=MS.gene035447.t1.exon4;Parent=MS.gene035447.t1 |
| chr8.2 | CDS | 51637806 | 51637903 | 51637806 | ID=cds.MS.gene035447.t1;Parent=MS.gene035447.t1 |
| chr8.2 | exon | 51638389 | 51638826 | 51638389 | ID=MS.gene035447.t1.exon5;Parent=MS.gene035447.t1 |
| chr8.2 | CDS | 51638389 | 51638826 | 51638389 | ID=cds.MS.gene035447.t1;Parent=MS.gene035447.t1 |
| Gene Sequence |
| Protein sequence |
