Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74487.t1 | XP_003611879.1 | 100 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 9.60E-148 | 532.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74487.t1 | P49204 | 90.5 | 262 | 25 | 0 | 1 | 262 | 1 | 262 | 6.3e-140 | 498.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74487.t1 | B7FL29 | 100.0 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 6.9e-148 | 532.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene27648 | MS.gene74487 | PPI |
| MS.gene069005 | MS.gene74487 | PPI |
| MS.gene53517 | MS.gene74487 | PPI |
| MS.gene74487 | MS.gene032440 | PPI |
| MS.gene95672 | MS.gene74487 | PPI |
| MS.gene74487 | MS.gene053443 | PPI |
| MS.gene74487 | MS.gene83444 | PPI |
| MS.gene74487 | MS.gene071029 | PPI |
| MS.gene74487 | MS.gene073888 | PPI |
| MS.gene59369 | MS.gene74487 | PPI |
| MS.gene74487 | MS.gene041181 | PPI |
| MS.gene028153 | MS.gene74487 | PPI |
| MS.gene74487 | MS.gene023799 | PPI |
| MS.gene74487 | MS.gene52173 | PPI |
| MS.gene74487 | MS.gene72768 | PPI |
| MS.gene74487 | MS.gene010439 | PPI |
| MS.gene74487 | MS.gene99501 | PPI |
| MS.gene047717 | MS.gene74487 | PPI |
| MS.gene74487 | MS.gene035447 | PPI |
| MS.gene43012 | MS.gene74487 | PPI |
| MS.gene74487 | MS.gene38870 | PPI |
| MS.gene74487 | MS.gene82426 | PPI |
| MS.gene42236 | MS.gene74487 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74487.t1 | MTR_5g018940 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
| MS.gene74487.t1 | MTR_5g018940 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
| MS.gene74487.t1 | MTR_8g052030 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
| MS.gene74487.t1 | MTR_4g014590 | 95.094 | 265 | 12 | 1 | 1 | 265 | 1 | 264 | 0.0 | 518 |
| MS.gene74487.t1 | MTR_7g069950 | 94.510 | 255 | 14 | 0 | 1 | 255 | 1 | 255 | 0.0 | 501 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene74487.t1 | AT5G07090 | 90.458 | 262 | 25 | 0 | 1 | 262 | 1 | 262 | 0.0 | 506 |
| MS.gene74487.t1 | AT2G17360 | 90.769 | 260 | 24 | 0 | 1 | 260 | 1 | 260 | 0.0 | 504 |
| MS.gene74487.t1 | AT5G58420 | 90.076 | 262 | 26 | 0 | 1 | 262 | 1 | 262 | 0.0 | 503 |
| MS.gene74487.t1 | AT5G07090 | 89.754 | 244 | 25 | 0 | 19 | 262 | 1 | 244 | 2.41e-169 | 468 |
| MS.gene74487.t1 | AT5G07090 | 89.754 | 244 | 25 | 0 | 19 | 262 | 1 | 244 | 2.41e-169 | 468 |
| MS.gene74487.t1 | AT2G17360 | 91.160 | 181 | 16 | 0 | 1 | 181 | 1 | 181 | 2.61e-125 | 354 |
Find 87 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAAAGCTCTCATTTGTCTT+AGG | 0.174170 | 5.2:+10620409 | None:intergenic |
| GGGAATGTTGTGATGGTTAC+TGG | 0.263169 | 5.2:-10619473 | MS.gene74487:CDS |
| GCATTGGATGCTTGACAAAT+TGG | 0.267158 | 5.2:-10621159 | MS.gene74487:CDS |
| TGTGGTCCTGAGGAGGGTTT+AGG | 0.299807 | 5.2:+10621033 | None:intergenic |
| TTAGCCCTGATGACGGGGTC+TGG | 0.336130 | 5.2:+10619557 | None:intergenic |
| AGGTTCGTTCAGTGCAATTT+GGG | 0.356395 | 5.2:-10619631 | MS.gene74487:CDS |
| GCTACCCAGACCCCGTCATC+AGG | 0.361624 | 5.2:-10619562 | MS.gene74487:CDS |
| AAGGTTCGTTCAGTGCAATT+TGG | 0.362570 | 5.2:-10619632 | MS.gene74487:CDS |
| GGTTACTGGTGGTAAGAATA+GGG | 0.368167 | 5.2:-10619459 | MS.gene74487:CDS |
| TGCGACCATCATAGGTGTTC+AGG | 0.372486 | 5.2:+10619591 | None:intergenic |
| GAAAGCTCTCATTTGTCTTA+GGG | 0.386255 | 5.2:+10620410 | None:intergenic |
| ATTTCATCAAATTCGATGTT+GGG | 0.389801 | 5.2:-10619493 | MS.gene74487:CDS |
| GACTTATCCAGCTGGATTCA+TGG | 0.391447 | 5.2:-10620878 | MS.gene74487:CDS |
| TGGTTACTGGTGGTAAGAAT+AGG | 0.421034 | 5.2:-10619460 | MS.gene74487:CDS |
| GCGGATAGTGCGACCATCAT+AGG | 0.423659 | 5.2:+10619583 | None:intergenic |
| CCATCATAGGTGTTCAGGTA+TGG | 0.424936 | 5.2:+10619596 | None:intergenic |
| CTGGTCAATGTGTTCACTAT+TGG | 0.427005 | 5.2:-10619341 | MS.gene74487:CDS |
| GATTTCATCAAATTCGATGT+TGG | 0.427275 | 5.2:-10619494 | MS.gene74487:CDS |
| TAATTTAATACCCTTACCCT+TGG | 0.430283 | 5.2:+10619289 | None:intergenic |
| CTTTGAGACAATCCACGTTC+AGG | 0.430746 | 5.2:-10619393 | MS.gene74487:CDS |
| TTTGTCAAGCATCCAATGCT+TGG | 0.431928 | 5.2:+10621163 | None:intergenic |
| TCCTTGTTGACGGCAAAGTC+AGG | 0.447044 | 5.2:-10620909 | MS.gene74487:CDS |
| CCTCATCATCTCTGACTGAA+TGG | 0.453638 | 5.2:+10620353 | None:intergenic |
| CCTCAGGACCACACAAGTCT+AGG | 0.454833 | 5.2:-10621023 | MS.gene74487:CDS |
| CATTGGATGCTTGACAAATT+GGG | 0.462746 | 5.2:-10621158 | MS.gene74487:CDS |
| CAACGACATGTCCTTGTTGA+CGG | 0.463122 | 5.2:-10620919 | MS.gene74487:CDS |
| TCATGAGTTTGCAACTCGTC+TGG | 0.463499 | 5.2:-10619360 | MS.gene74487:CDS |
| TTGTCAAGCATCCAATGCTT+GGG | 0.467712 | 5.2:+10621164 | None:intergenic |
| GTGTCATTAGCCCTGATGAC+GGG | 0.468677 | 5.2:+10619551 | None:intergenic |
| TAGCCCTGATGACGGGGTCT+GGG | 0.470117 | 5.2:+10619558 | None:intergenic |
| TGATGACGGGGTCTGGGTAG+CGG | 0.470305 | 5.2:+10619564 | None:intergenic |
| ATGGAGACGGAAACGGCCTT+TGG | 0.474465 | 5.2:+10620372 | None:intergenic |
| TCAGAATAGCAATGACTTCA+CGG | 0.477884 | 5.2:+10620944 | None:intergenic |
| GGCTCAATGCTCCCAAGCAT+TGG | 0.482000 | 5.2:-10621175 | MS.gene74487:CDS |
| GGTATCTCTTCCCAAGGGTA+AGG | 0.487613 | 5.2:-10619300 | MS.gene74487:CDS |
| CATCATAGGTGTTCAGGTAT+GGG | 0.488276 | 5.2:+10619597 | None:intergenic |
| GACTTGTGTGGTCCTGAGGA+GGG | 0.506962 | 5.2:+10621027 | None:intergenic |
| ACTTATCCAGCTGGATTCAT+GGG | 0.514100 | 5.2:-10620877 | MS.gene74487:intron |
| AATTTAATACCCTTACCCTT+GGG | 0.520640 | 5.2:+10619290 | None:intergenic |
| TTCATACCCATGAATCCAGC+TGG | 0.521349 | 5.2:+10620871 | None:intergenic |
| CCATACCTGAACACCTATGA+TGG | 0.522589 | 5.2:-10619596 | MS.gene74487:CDS |
| TAACCGTCATTGAGGAAGCT+AGG | 0.523856 | 5.2:-10619268 | MS.gene74487:CDS |
| CCTAGACTTGTGTGGTCCTG+AGG | 0.529340 | 5.2:+10621023 | None:intergenic |
| CTGAACGTGGATTGTCTCAA+AGG | 0.529462 | 5.2:+10619394 | None:intergenic |
| CTCAGGACCACACAAGTCTA+GGG | 0.530312 | 5.2:-10621022 | MS.gene74487:CDS |
| AGACTTGTGTGGTCCTGAGG+AGG | 0.538843 | 5.2:+10621026 | None:intergenic |
| TTGGCAAGGGGACAAAGCCA+TGG | 0.543228 | 5.2:-10619322 | MS.gene74487:CDS |
| TCAGTGCAATTTGGGCAGAA+AGG | 0.544106 | 5.2:-10619623 | MS.gene74487:CDS |
| GGCTAATGACACAATCAAGC+TGG | 0.549219 | 5.2:-10619540 | MS.gene74487:CDS |
| CAATGTGTTCACTATTGGCA+AGG | 0.556225 | 5.2:-10619336 | MS.gene74487:CDS |
| TATTAAATTAACCGTCATTG+AGG | 0.559320 | 5.2:-10619276 | MS.gene74487:CDS |
| TAGGCTCCTAAACCCTCCTC+AGG | 0.560132 | 5.2:-10621039 | MS.gene74487:CDS |
| CTTCCTAGCTTCCTCAATGA+CGG | 0.562602 | 5.2:+10619265 | None:intergenic |
| CGATGTTGGGAATGTTGTGA+TGG | 0.567830 | 5.2:-10619480 | MS.gene74487:CDS |
| TCATTGAGGAAGCTAGGAAG+AGG | 0.575342 | 5.2:-10619262 | MS.gene74487:CDS |
| GCCATGGGTATCTCTTCCCA+AGG | 0.583131 | 5.2:-10619306 | MS.gene74487:CDS |
| TGACTGAATGGAGACGGAAA+CGG | 0.588177 | 5.2:+10620365 | None:intergenic |
| CATCTCTGACTGAATGGAGA+CGG | 0.590006 | 5.2:+10620359 | None:intergenic |
| GTTTGAAGAAGCATTTGAAG+AGG | 0.590332 | 5.2:-10621196 | MS.gene74487:CDS |
| AGTCAGAGATGATGAGGCAA+AGG | 0.591111 | 5.2:-10620347 | MS.gene74487:intron |
| CCATTCAGTCAGAGATGATG+AGG | 0.595121 | 5.2:-10620353 | MS.gene74487:CDS |
| GTATCTCTTCCCAAGGGTAA+GGG | 0.600286 | 5.2:-10619299 | MS.gene74487:CDS |
| AATGTGTTCACTATTGGCAA+GGG | 0.602196 | 5.2:-10619335 | MS.gene74487:CDS |
| TCCTGACTTTGCCGTCAACA+AGG | 0.608758 | 5.2:+10620908 | None:intergenic |
| CTACCCAGACCCCGTCATCA+GGG | 0.613237 | 5.2:-10619561 | MS.gene74487:CDS |
| TTGTGAATGTTACAGGCGAG+AGG | 0.619063 | 5.2:-10621218 | MS.gene74487:intron |
| TTTCGCAAGATCAGAATGAG+TGG | 0.619970 | 5.2:+10620991 | None:intergenic |
| ACTGACAAGACTTATCCAGC+TGG | 0.621794 | 5.2:-10620886 | MS.gene74487:CDS |
| ATGGTAGTTCAAGCTGTGCA+AGG | 0.622446 | 5.2:-10619651 | MS.gene74487:intron |
| TGGCAAGGGGACAAAGCCAT+GGG | 0.628119 | 5.2:-10619321 | MS.gene74487:CDS |
| TGTCATTAGCCCTGATGACG+GGG | 0.633241 | 5.2:+10619552 | None:intergenic |
| TTCGCAAGATCAGAATGAGT+GGG | 0.633304 | 5.2:+10620992 | None:intergenic |
| TGTGTCATTAGCCCTGATGA+CGG | 0.635671 | 5.2:+10619550 | None:intergenic |
| ATCCACGTTCAGGATGCCAC+AGG | 0.641045 | 5.2:-10619383 | MS.gene74487:CDS |
| GTTACTGGTGGTAAGAATAG+GGG | 0.641635 | 5.2:-10619458 | MS.gene74487:CDS |
| AGACATTCCCTAGACTTGTG+TGG | 0.650622 | 5.2:+10621015 | None:intergenic |
| CCCTTGGGAAGAGATACCCA+TGG | 0.652851 | 5.2:+10619305 | None:intergenic |
| CATTGAGGAAGCTAGGAAGA+GGG | 0.661297 | 5.2:-10619261 | MS.gene74487:CDS |
| GACCTGTGGCATCCTGAACG+TGG | 0.664577 | 5.2:+10619381 | None:intergenic |
| CACAATCAAGCTGGACCTCG+AGG | 0.664730 | 5.2:-10619531 | MS.gene74487:CDS |
| ATGTGTTCACTATTGGCAAG+GGG | 0.666865 | 5.2:-10619334 | MS.gene74487:CDS |
| CCATGGGTATCTCTTCCCAA+GGG | 0.685421 | 5.2:-10619305 | MS.gene74487:CDS |
| TGGATGCTTGACAAATTGGG+TGG | 0.687057 | 5.2:-10621155 | MS.gene74487:CDS |
| TTACTGGTGGTAAGAATAGG+GGG | 0.688676 | 5.2:-10619457 | MS.gene74487:CDS |
| AGTTGCAAACTCATGACCTG+TGG | 0.695037 | 5.2:+10619367 | None:intergenic |
| CGTCTGCTGTATGACACCAA+AGG | 0.695045 | 5.2:-10620388 | MS.gene74487:CDS |
| AATGTTGTGATGGTTACTGG+TGG | 0.735899 | 5.2:-10619470 | MS.gene74487:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTATTTATTTTTTAATCTA+AGG | - | chr5.2:10620093-10620112 | MS.gene74487:intron | 10.0% |
| !!! | TTTTTTAAAATATTTGTATC+TGG | - | chr5.2:10620731-10620750 | MS.gene74487:intron | 10.0% |
| !! | AATTATCTTATACCAAATAA+AGG | + | chr5.2:10619927-10619946 | None:intergenic | 15.0% |
| !! | ATATTATAATTAACATGTGA+TGG | - | chr5.2:10621085-10621104 | MS.gene74487:intron | 15.0% |
| !!! | AATTTTTGTGTGAAATTTAT+AGG | - | chr5.2:10620123-10620142 | MS.gene74487:intron | 15.0% |
| !!! | ATAAGATAATTTTTGAACTT+GGG | - | chr5.2:10619936-10619955 | MS.gene74487:intron | 15.0% |
| !!! | ATATTTTAAAAAACACAATC+AGG | + | chr5.2:10620724-10620743 | None:intergenic | 15.0% |
| !!! | GTTATTTGATTTATGATATT+AGG | - | chr5.2:10619444-10619463 | MS.gene74487:CDS | 15.0% |
| !!! | TATAAGATAATTTTTGAACT+TGG | - | chr5.2:10619935-10619954 | MS.gene74487:intron | 15.0% |
| !!! | TTTATCATGATTTATTTTCT+GGG | - | chr5.2:10619384-10619403 | MS.gene74487:CDS | 15.0% |
| !!! | TTTTTCATATGCTAAAAAAT+AGG | - | chr5.2:10619752-10619771 | MS.gene74487:intron | 15.0% |
| !!! | TTTTTTAGCATATGAAAAAT+AGG | + | chr5.2:10619751-10619770 | None:intergenic | 15.0% |
| !! | AAAAGAAAATGAAAACATTG+AGG | + | chr5.2:10619265-10619284 | None:intergenic | 20.0% |
| !! | AAAGAAAATGAAAACATTGA+GGG | + | chr5.2:10619264-10619283 | None:intergenic | 20.0% |
| !! | AAATACAATCTATTGTAACA+TGG | + | chr5.2:10620577-10620596 | None:intergenic | 20.0% |
| !! | AATTGAAATATGATAGAACT+TGG | + | chr5.2:10620067-10620086 | None:intergenic | 20.0% |
| !! | ATGTTACAATAGATTGTATT+TGG | - | chr5.2:10620576-10620595 | MS.gene74487:intron | 20.0% |
| !! | ATTCTATGAATCATTTGATT+TGG | - | chr5.2:10620692-10620711 | MS.gene74487:intron | 20.0% |
| !! | GACAATAATAATTGAATACA+AGG | - | chr5.2:10620508-10620527 | MS.gene74487:intron | 20.0% |
| !! | TATCATAAATCAAATAACAC+AGG | + | chr5.2:10619442-10619461 | None:intergenic | 20.0% |
| !! | TCTAATCATCAAAATAAACT+AGG | + | chr5.2:10619481-10619500 | None:intergenic | 20.0% |
| !!! | CTTTATCATGATTTATTTTC+TGG | - | chr5.2:10619383-10619402 | MS.gene74487:CDS | 20.0% |
| !!! | TATTATTCATAAGCTTGTTA+AGG | - | chr5.2:10619645-10619664 | MS.gene74487:CDS | 20.0% |
| !!! | TTGAATTTTGATCCTTTATT+TGG | - | chr5.2:10619912-10619931 | MS.gene74487:intron | 20.0% |
| ! | AAAAAATAGGTCAATCCAAA+CGG | - | chr5.2:10619765-10619784 | MS.gene74487:intron | 25.0% |
| ! | AAGAACAGAGAAAAACATAA+GGG | - | chr5.2:10621762-10621781 | MS.gene74487:intron | 25.0% |
| ! | AGAGATCAGTAATCAAATAA+AGG | + | chr5.2:10620862-10620881 | None:intergenic | 25.0% |
| ! | AGATTTATGTTATGTGTTCA+TGG | - | chr5.2:10621154-10621173 | MS.gene74487:CDS | 25.0% |
| ! | ATGATTAGATCCCTTAATTT+AGG | - | chr5.2:10619492-10619511 | MS.gene74487:CDS | 25.0% |
| ! | ATTTCATCAAATTCGATGTT+GGG | - | chr5.2:10621688-10621707 | MS.gene74487:intron | 25.0% |
| ! | CGGAATAAATTAAAAGATCA+TGG | + | chr5.2:10620888-10620907 | None:intergenic | 25.0% |
| ! | TATTAAATTAACCGTCATTG+AGG | - | chr5.2:10621905-10621924 | MS.gene74487:intron | 25.0% |
| ! | TCATCAAAATAAACTAGGAA+TGG | + | chr5.2:10619476-10619495 | None:intergenic | 25.0% |
| ! | TGATTAGATCCCTTAATTTA+GGG | - | chr5.2:10619493-10619512 | MS.gene74487:CDS | 25.0% |
| ! | TGTTCAAAAACACTACATAA+AGG | + | chr5.2:10619870-10619889 | None:intergenic | 25.0% |
| ! | TTAGTATAATTAACACGTGA+TGG | - | chr5.2:10621303-10621322 | MS.gene74487:intron | 25.0% |
| !!! | CGAAAATTTATTTCGAGTTT+AGG | - | chr5.2:10619414-10619433 | MS.gene74487:CDS | 25.0% |
| !!! | GATCTTTTAATTTATTCCGT+AGG | - | chr5.2:10620889-10620908 | MS.gene74487:CDS | 25.0% |
| !!! | GTTTTATCTGAAGTTAAAAG+TGG | - | chr5.2:10620530-10620549 | MS.gene74487:intron | 25.0% |
| AAAAATAGGTCAATCCAAAC+GGG | - | chr5.2:10619766-10619785 | MS.gene74487:intron | 30.0% | |
| AAAATGAAAACATTGAGGGA+GGG | + | chr5.2:10619260-10619279 | None:intergenic | 30.0% | |
| AATTTAATACCCTTACCCTT+GGG | + | chr5.2:10621894-10621913 | None:intergenic | 30.0% | |
| ATGGTGTAATTAACATGTGA+TGG | - | chr5.2:10621173-10621192 | MS.gene74487:CDS | 30.0% | |
| ATTCATAGAATTCTTTCACG+AGG | + | chr5.2:10620683-10620702 | None:intergenic | 30.0% | |
| CAAGAACAGAGAAAAACATA+AGG | - | chr5.2:10621761-10621780 | MS.gene74487:intron | 30.0% | |
| GATTTCATCAAATTCGATGT+TGG | - | chr5.2:10621687-10621706 | MS.gene74487:intron | 30.0% | |
| TAAATAAGCCGATCCAAATA+TGG | - | chr5.2:10619548-10619567 | MS.gene74487:CDS | 30.0% | |
| TAATTTAATACCCTTACCCT+TGG | + | chr5.2:10621895-10621914 | None:intergenic | 30.0% | |
| TCAATCAAGCCCTAAATTAA+GGG | + | chr5.2:10619505-10619524 | None:intergenic | 30.0% | |
| TGATGTATTATAGCAGAGTA+TGG | - | chr5.2:10620459-10620478 | MS.gene74487:intron | 30.0% | |
| TTCAATCAAGCCCTAAATTA+AGG | + | chr5.2:10619506-10619525 | None:intergenic | 30.0% | |
| TTTCGTGTATGTGATATACA+TGG | - | chr5.2:10621511-10621530 | MS.gene74487:intron | 30.0% | |
| ! | ATTTGGCATGTTTTCATTAC+TGG | - | chr5.2:10620593-10620612 | MS.gene74487:intron | 30.0% |
| AATGTGTTCACTATTGGCAA+GGG | - | chr5.2:10621846-10621865 | MS.gene74487:intron | 35.0% | |
| ATTCCGTAGGATACTTTGAA+TGG | - | chr5.2:10620902-10620921 | MS.gene74487:CDS | 35.0% | |
| CATTGGATGCTTGACAAATT+GGG | - | chr5.2:10620023-10620042 | MS.gene74487:intron | 35.0% | |
| CCCTTAAACCATATTTGGAT+CGG | + | chr5.2:10619559-10619578 | None:intergenic | 35.0% | |
| CCGATCCAAATATGGTTTAA+GGG | - | chr5.2:10619556-10619575 | MS.gene74487:CDS | 35.0% | |
| CGATCCAAATATGGTTTAAG+GGG | - | chr5.2:10619557-10619576 | MS.gene74487:CDS | 35.0% | |
| GAAAATGAAAACATTGAGGG+AGG | + | chr5.2:10619261-10619280 | None:intergenic | 35.0% | |
| GAAAGCTCTCATTTGTCTTA+GGG | + | chr5.2:10620774-10620793 | None:intergenic | 35.0% | |
| GATGGCTATTACTGTTTGTA+AGG | - | chr5.2:10621191-10621210 | MS.gene74487:CDS | 35.0% | |
| GTATTATAGCAGAGTATGGT+AGG | - | chr5.2:10620463-10620482 | MS.gene74487:intron | 35.0% | |
| GTGTAATTAAATAAGCTGCC+TGG | - | chr5.2:10620647-10620666 | MS.gene74487:intron | 35.0% | |
| TCAGAATAGCAATGACTTCA+CGG | + | chr5.2:10620240-10620259 | None:intergenic | 35.0% | |
| TTTGGACAATCAACATGCTT+TGG | - | chr5.2:10620371-10620390 | MS.gene74487:CDS | 35.0% | |
| ! | AAGCCATTCAAAGTATCCTA+CGG | + | chr5.2:10620908-10620927 | None:intergenic | 35.0% |
| ! | GTGATGGCTTTTACTTTGAA+TGG | - | chr5.2:10621319-10621338 | MS.gene74487:intron | 35.0% |
| !! | GTGATGGTTGTTACTTTGTA+TGG | - | chr5.2:10621101-10621120 | MS.gene74487:intron | 35.0% |
| !! | GTTTGAAGAAGCATTTGAAG+AGG | - | chr5.2:10619985-10620004 | MS.gene74487:intron | 35.0% |
| !! | TGAATCATTTGATTTGGCTG+TGG | - | chr5.2:10620698-10620717 | MS.gene74487:intron | 35.0% |
| AAGGTTCGTTCAGTGCAATT+TGG | - | chr5.2:10621549-10621568 | MS.gene74487:intron | 40.0% | |
| AATGTTGTGATGGTTACTGG+TGG | - | chr5.2:10621711-10621730 | MS.gene74487:intron | 40.0% | |
| ACAAAAACTAAGCACCCGTT+TGG | + | chr5.2:10619783-10619802 | None:intergenic | 40.0% | |
| ACAGCCCCTTAAACCATATT+TGG | + | chr5.2:10619564-10619583 | None:intergenic | 40.0% | |
| ACTTATCCAGCTGGATTCAT+GGG | - | chr5.2:10620304-10620323 | MS.gene74487:intron | 40.0% | |
| AGCAGAGTATGGTAGGTTAA+AGG | - | chr5.2:10620470-10620489 | MS.gene74487:intron | 40.0% | |
| AGGTTCGTTCAGTGCAATTT+GGG | - | chr5.2:10621550-10621569 | MS.gene74487:intron | 40.0% | |
| ATATGGTTTAAGGGGCTGTT+TGG | - | chr5.2:10619565-10619584 | MS.gene74487:CDS | 40.0% | |
| ATGTGTTCACTATTGGCAAG+GGG | - | chr5.2:10621847-10621866 | MS.gene74487:intron | 40.0% | |
| CAATGTGTTCACTATTGGCA+AGG | - | chr5.2:10621845-10621864 | MS.gene74487:intron | 40.0% | |
| CATCATAGGTGTTCAGGTAT+GGG | + | chr5.2:10621587-10621606 | None:intergenic | 40.0% | |
| CGAAAGCTCTCATTTGTCTT+AGG | + | chr5.2:10620775-10620794 | None:intergenic | 40.0% | |
| CTGGTCAATGTGTTCACTAT+TGG | - | chr5.2:10621840-10621859 | MS.gene74487:intron | 40.0% | |
| GCATTGGATGCTTGACAAAT+TGG | - | chr5.2:10620022-10620041 | MS.gene74487:intron | 40.0% | |
| GCCGATCCAAATATGGTTTA+AGG | - | chr5.2:10619555-10619574 | MS.gene74487:CDS | 40.0% | |
| GGGATGTTTGTGAATGTTAC+AGG | - | chr5.2:10619956-10619975 | MS.gene74487:intron | 40.0% | |
| GGTTACTGGTGGTAAGAATA+GGG | - | chr5.2:10621722-10621741 | MS.gene74487:intron | 40.0% | |
| GTGATAGCTGTTACTGTGAA+TGG | - | chr5.2:10621006-10621025 | MS.gene74487:CDS | 40.0% | |
| GTTACTGGTGGTAAGAATAG+GGG | - | chr5.2:10621723-10621742 | MS.gene74487:intron | 40.0% | |
| TGGTTACTGGTGGTAAGAAT+AGG | - | chr5.2:10621721-10621740 | MS.gene74487:intron | 40.0% | |
| TTACTGGTGGTAAGAATAGG+GGG | - | chr5.2:10621724-10621743 | MS.gene74487:intron | 40.0% | |
| TTCGCAAGATCAGAATGAGT+GGG | + | chr5.2:10620192-10620211 | None:intergenic | 40.0% | |
| TTGTCAAGCATCCAATGCTT+GGG | + | chr5.2:10620020-10620039 | None:intergenic | 40.0% | |
| TTTCGCAAGATCAGAATGAG+TGG | + | chr5.2:10620193-10620212 | None:intergenic | 40.0% | |
| TTTGTCAAGCATCCAATGCT+TGG | + | chr5.2:10620021-10620040 | None:intergenic | 40.0% | |
| ! | TAAATAAGCTGCCTGGTCTT+TGG | - | chr5.2:10620654-10620673 | MS.gene74487:intron | 40.0% |
| !!! | CAACAATCTTGTTTTCCTCG+AGG | + | chr5.2:10621668-10621687 | None:intergenic | 40.0% |
| ACTGACAAGACTTATCCAGC+TGG | - | chr5.2:10620295-10620314 | MS.gene74487:intron | 45.0% | |
| AGACATTCCCTAGACTTGTG+TGG | + | chr5.2:10620169-10620188 | None:intergenic | 45.0% | |
| AGTCAGAGATGATGAGGCAA+AGG | - | chr5.2:10620834-10620853 | MS.gene74487:intron | 45.0% | |
| AGTTGCAAACTCATGACCTG+TGG | + | chr5.2:10621817-10621836 | None:intergenic | 45.0% | |
| ATGGTAGTTCAAGCTGTGCA+AGG | - | chr5.2:10621530-10621549 | MS.gene74487:intron | 45.0% | |
| CAACGACATGTCCTTGTTGA+CGG | - | chr5.2:10620262-10620281 | MS.gene74487:intron | 45.0% | |
| CATCTCTGACTGAATGGAGA+CGG | + | chr5.2:10620825-10620844 | None:intergenic | 45.0% | |
| CATTGAGGAAGCTAGGAAGA+GGG | - | chr5.2:10621920-10621939 | MS.gene74487:intron | 45.0% | |
| CCATACCTGAACACCTATGA+TGG | - | chr5.2:10621585-10621604 | MS.gene74487:intron | 45.0% | |
| CCATCATAGGTGTTCAGGTA+TGG | + | chr5.2:10621588-10621607 | None:intergenic | 45.0% | |
| CCATTCAGTCAGAGATGATG+AGG | - | chr5.2:10620828-10620847 | MS.gene74487:intron | 45.0% | |
| CCTCATCATCTCTGACTGAA+TGG | + | chr5.2:10620831-10620850 | None:intergenic | 45.0% | |
| CGATGTTGGGAATGTTGTGA+TGG | - | chr5.2:10621701-10621720 | MS.gene74487:intron | 45.0% | |
| CTTCCTAGCTTCCTCAATGA+CGG | + | chr5.2:10621919-10621938 | None:intergenic | 45.0% | |
| GACTTATCCAGCTGGATTCA+TGG | - | chr5.2:10620303-10620322 | MS.gene74487:intron | 45.0% | |
| GGCTAATGACACAATCAAGC+TGG | - | chr5.2:10621641-10621660 | MS.gene74487:intron | 45.0% | |
| GGGAATGTTGTGATGGTTAC+TGG | - | chr5.2:10621708-10621727 | MS.gene74487:intron | 45.0% | |
| GTATCTCTTCCCAAGGGTAA+GGG | - | chr5.2:10621882-10621901 | MS.gene74487:intron | 45.0% | |
| GTTTAAGGGGCTGTTTGGAT+TGG | - | chr5.2:10619570-10619589 | MS.gene74487:CDS | 45.0% | |
| TAACCGTCATTGAGGAAGCT+AGG | - | chr5.2:10621913-10621932 | MS.gene74487:intron | 45.0% | |
| TCAGTGCAATTTGGGCAGAA+AGG | - | chr5.2:10621558-10621577 | MS.gene74487:intron | 45.0% | |
| TCATGAGTTTGCAACTCGTC+TGG | - | chr5.2:10621821-10621840 | MS.gene74487:intron | 45.0% | |
| TCATTGAGGAAGCTAGGAAG+AGG | - | chr5.2:10621919-10621938 | MS.gene74487:intron | 45.0% | |
| TGACTGAATGGAGACGGAAA+CGG | + | chr5.2:10620819-10620838 | None:intergenic | 45.0% | |
| TGGATGCTTGACAAATTGGG+TGG | - | chr5.2:10620026-10620045 | MS.gene74487:intron | 45.0% | |
| TTCATACCCATGAATCCAGC+TGG | + | chr5.2:10620313-10620332 | None:intergenic | 45.0% | |
| TTGTGAATGTTACAGGCGAG+AGG | - | chr5.2:10619963-10619982 | MS.gene74487:intron | 45.0% | |
| ! | CTGAACGTGGATTGTCTCAA+AGG | + | chr5.2:10621790-10621809 | None:intergenic | 45.0% |
| ! | TGTGTCATTAGCCCTGATGA+CGG | + | chr5.2:10621634-10621653 | None:intergenic | 45.0% |
| !! | CTTTGAGACAATCCACGTTC+AGG | - | chr5.2:10621788-10621807 | MS.gene74487:intron | 45.0% |
| !!! | AATAATTGATTAATTTATTT+TGG | - | chr5.2:10620353-10620372 | MS.gene74487:CDS | 5.0% |
| CCATGGGTATCTCTTCCCAA+GGG | - | chr5.2:10621876-10621895 | MS.gene74487:intron | 50.0% | |
| CGTCTGCTGTATGACACCAA+AGG | - | chr5.2:10620793-10620812 | MS.gene74487:intron | 50.0% | |
| CTCAGGACCACACAAGTCTA+GGG | - | chr5.2:10620159-10620178 | MS.gene74487:intron | 50.0% | |
| GGTATCTCTTCCCAAGGGTA+AGG | - | chr5.2:10621881-10621900 | MS.gene74487:intron | 50.0% | |
| TCACGAGGATTCCAAAGACC+AGG | + | chr5.2:10620668-10620687 | None:intergenic | 50.0% | |
| TCCTGACTTTGCCGTCAACA+AGG | + | chr5.2:10620276-10620295 | None:intergenic | 50.0% | |
| TCCTTGTTGACGGCAAAGTC+AGG | - | chr5.2:10620272-10620291 | MS.gene74487:intron | 50.0% | |
| TGCGACCATCATAGGTGTTC+AGG | + | chr5.2:10621593-10621612 | None:intergenic | 50.0% | |
| ! | GTGTCATTAGCCCTGATGAC+GGG | + | chr5.2:10621633-10621652 | None:intergenic | 50.0% |
| ! | TGTCATTAGCCCTGATGACG+GGG | + | chr5.2:10621632-10621651 | None:intergenic | 50.0% |
| AGACTTGTGTGGTCCTGAGG+AGG | + | chr5.2:10620158-10620177 | None:intergenic | 55.0% | |
| ATCCACGTTCAGGATGCCAC+AGG | - | chr5.2:10621798-10621817 | MS.gene74487:intron | 55.0% | |
| ATGGAGACGGAAACGGCCTT+TGG | + | chr5.2:10620812-10620831 | None:intergenic | 55.0% | |
| CACAATCAAGCTGGACCTCG+AGG | - | chr5.2:10621650-10621669 | MS.gene74487:intron | 55.0% | |
| CCCTTGGGAAGAGATACCCA+TGG | + | chr5.2:10621879-10621898 | None:intergenic | 55.0% | |
| CCTAGACTTGTGTGGTCCTG+AGG | + | chr5.2:10620161-10620180 | None:intergenic | 55.0% | |
| CCTCAGGACCACACAAGTCT+AGG | - | chr5.2:10620158-10620177 | MS.gene74487:intron | 55.0% | |
| GACTTGTGTGGTCCTGAGGA+GGG | + | chr5.2:10620157-10620176 | None:intergenic | 55.0% | |
| GCCATGGGTATCTCTTCCCA+AGG | - | chr5.2:10621875-10621894 | MS.gene74487:intron | 55.0% | |
| GCGGATAGTGCGACCATCAT+AGG | + | chr5.2:10621601-10621620 | None:intergenic | 55.0% | |
| GGCTCAATGCTCCCAAGCAT+TGG | - | chr5.2:10620006-10620025 | MS.gene74487:intron | 55.0% | |
| TAGGCTCCTAAACCCTCCTC+AGG | - | chr5.2:10620142-10620161 | MS.gene74487:intron | 55.0% | |
| TGGCAAGGGGACAAAGCCAT+GGG | - | chr5.2:10621860-10621879 | MS.gene74487:intron | 55.0% | |
| TGTGGTCCTGAGGAGGGTTT+AGG | + | chr5.2:10620151-10620170 | None:intergenic | 55.0% | |
| TTGGCAAGGGGACAAAGCCA+TGG | - | chr5.2:10621859-10621878 | MS.gene74487:intron | 55.0% | |
| ! | GGTAAGAATAGGGGGCGTGT+TGG | - | chr5.2:10621732-10621751 | MS.gene74487:intron | 55.0% |
| CTACCCAGACCCCGTCATCA+GGG | - | chr5.2:10621620-10621639 | MS.gene74487:intron | 60.0% | |
| GACCTGTGGCATCCTGAACG+TGG | + | chr5.2:10621803-10621822 | None:intergenic | 60.0% | |
| !! | TAGCCCTGATGACGGGGTCT+GGG | + | chr5.2:10621626-10621645 | None:intergenic | 60.0% |
| !! | TGATGACGGGGTCTGGGTAG+CGG | + | chr5.2:10621620-10621639 | None:intergenic | 60.0% |
| !! | TTAGCCCTGATGACGGGGTC+TGG | + | chr5.2:10621627-10621646 | None:intergenic | 60.0% |
| GCTACCCAGACCCCGTCATC+AGG | - | chr5.2:10621619-10621638 | MS.gene74487:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 10619229 | 10621974 | 10619229 | ID=MS.gene74487 |
| chr5.2 | mRNA | 10619229 | 10621974 | 10619229 | ID=MS.gene74487.t1;Parent=MS.gene74487 |
| chr5.2 | exon | 10621972 | 10621974 | 10621972 | ID=MS.gene74487.t1.exon1;Parent=MS.gene74487.t1 |
| chr5.2 | CDS | 10621972 | 10621974 | 10621972 | ID=cds.MS.gene74487.t1;Parent=MS.gene74487.t1 |
| chr5.2 | exon | 10621148 | 10621225 | 10621148 | ID=MS.gene74487.t1.exon2;Parent=MS.gene74487.t1 |
| chr5.2 | CDS | 10621148 | 10621225 | 10621148 | ID=cds.MS.gene74487.t1;Parent=MS.gene74487.t1 |
| chr5.2 | exon | 10620878 | 10621058 | 10620878 | ID=MS.gene74487.t1.exon3;Parent=MS.gene74487.t1 |
| chr5.2 | CDS | 10620878 | 10621058 | 10620878 | ID=cds.MS.gene74487.t1;Parent=MS.gene74487.t1 |
| chr5.2 | exon | 10620348 | 10620445 | 10620348 | ID=MS.gene74487.t1.exon4;Parent=MS.gene74487.t1 |
| chr5.2 | CDS | 10620348 | 10620445 | 10620348 | ID=cds.MS.gene74487.t1;Parent=MS.gene74487.t1 |
| chr5.2 | exon | 10619229 | 10619666 | 10619229 | ID=MS.gene74487.t1.exon5;Parent=MS.gene74487.t1 |
| chr5.2 | CDS | 10619229 | 10619666 | 10619229 | ID=cds.MS.gene74487.t1;Parent=MS.gene74487.t1 |
| Gene Sequence |
| Protein sequence |
