Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43012.t1 | XP_003611879.1 | 100 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 9.60E-148 | 532.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43012.t1 | P49204 | 90.5 | 262 | 25 | 0 | 1 | 262 | 1 | 262 | 6.3e-140 | 498.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43012.t1 | B7FL29 | 100.0 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 6.9e-148 | 532.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene43012 | MS.gene83444 | PPI |
| MS.gene069005 | MS.gene43012 | PPI |
| MS.gene43012 | MS.gene010439 | PPI |
| MS.gene43012 | MS.gene035447 | PPI |
| MS.gene43012 | MS.gene59369 | PPI |
| MS.gene43012 | MS.gene38870 | PPI |
| MS.gene43012 | MS.gene82426 | PPI |
| MS.gene43012 | MS.gene53517 | PPI |
| MS.gene43012 | MS.gene028153 | PPI |
| MS.gene43012 | MS.gene95672 | PPI |
| MS.gene43012 | MS.gene071029 | PPI |
| MS.gene43012 | MS.gene032440 | PPI |
| MS.gene43012 | MS.gene073888 | PPI |
| MS.gene43012 | MS.gene27648 | PPI |
| MS.gene43012 | MS.gene053443 | PPI |
| MS.gene43012 | MS.gene047717 | PPI |
| MS.gene43012 | MS.gene069005 | PPI |
| MS.gene047717 | MS.gene43012 | PPI |
| MS.gene43012 | MS.gene023799 | PPI |
| MS.gene43012 | MS.gene52173 | PPI |
| MS.gene43012 | MS.gene72768 | PPI |
| MS.gene43012 | MS.gene42236 | PPI |
| MS.gene43012 | MS.gene74487 | PPI |
| MS.gene43012 | MS.gene99501 | PPI |
| MS.gene43012 | MS.gene041181 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43012.t1 | MTR_5g018940 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
| MS.gene43012.t1 | MTR_5g018940 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
| MS.gene43012.t1 | MTR_8g052030 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
| MS.gene43012.t1 | MTR_4g014590 | 95.094 | 265 | 12 | 1 | 1 | 265 | 1 | 264 | 0.0 | 518 |
| MS.gene43012.t1 | MTR_7g069950 | 94.510 | 255 | 14 | 0 | 1 | 255 | 1 | 255 | 0.0 | 501 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43012.t1 | AT5G07090 | 90.458 | 262 | 25 | 0 | 1 | 262 | 1 | 262 | 0.0 | 506 |
| MS.gene43012.t1 | AT2G17360 | 90.769 | 260 | 24 | 0 | 1 | 260 | 1 | 260 | 0.0 | 504 |
| MS.gene43012.t1 | AT5G58420 | 90.076 | 262 | 26 | 0 | 1 | 262 | 1 | 262 | 0.0 | 503 |
| MS.gene43012.t1 | AT5G07090 | 89.754 | 244 | 25 | 0 | 19 | 262 | 1 | 244 | 2.41e-169 | 468 |
| MS.gene43012.t1 | AT5G07090 | 89.754 | 244 | 25 | 0 | 19 | 262 | 1 | 244 | 2.41e-169 | 468 |
| MS.gene43012.t1 | AT2G17360 | 91.160 | 181 | 16 | 0 | 1 | 181 | 1 | 181 | 2.61e-125 | 354 |
Find 89 sgRNAs with CRISPR-Local
Find 132 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTGGATGCTTGACAAAT+TGG | 0.267158 | 8.1:-55637749 | MS.gene43012:CDS |
| TTCCTCCAGATCCAGCTTGA+TGG | 0.308982 | 8.1:+55636152 | None:intergenic |
| CGTCAGGACCACACAAATCT+AGG | 0.320235 | 8.1:-55637620 | MS.gene43012:CDS |
| TGTGGTCCTGACGAGGGTTT+TGG | 0.324202 | 8.1:+55637630 | None:intergenic |
| TTGGTCAATGTGTTTACTAT+TGG | 0.329763 | 8.1:-55635964 | MS.gene43012:CDS |
| TTAGCCCTGATGACGGGGTC+TGG | 0.331490 | 8.1:+55636180 | None:intergenic |
| AGGTCCGTTCAGTGCAGTTT+GGG | 0.357131 | 8.1:-55636254 | MS.gene43012:CDS |
| GGGAACGTCGTTATGGTTAC+TGG | 0.369601 | 8.1:-55636096 | MS.gene43012:CDS |
| GGTTACTGGTGGTAAGAATA+GGG | 0.371328 | 8.1:-55636082 | MS.gene43012:CDS |
| TGGTTACTGGTGGTAAGAAT+AGG | 0.371768 | 8.1:-55636083 | MS.gene43012:CDS |
| GTTACCCAGACCCCGTCATC+AGG | 0.378657 | 8.1:-55636185 | MS.gene43012:CDS |
| TTGTCAAGCATCCAATGCTT+GGG | 0.386706 | 8.1:+55637754 | None:intergenic |
| AAGGTCCGTTCAGTGCAGTT+TGG | 0.387427 | 8.1:-55636255 | MS.gene43012:CDS |
| GACTTATCCAGCTGGATTCA+TGG | 0.391447 | 8.1:-55637475 | MS.gene43012:CDS |
| CGACACCATCAAGCTGGATC+TGG | 0.413761 | 8.1:-55636157 | MS.gene43012:CDS |
| TGATGTTGGGAACGTCGTTA+TGG | 0.422263 | 8.1:-55636103 | MS.gene43012:CDS |
| CTTTGAGACAATCCACGTTC+AGG | 0.430746 | 8.1:-55636016 | MS.gene43012:CDS |
| ATTTCATCAAGTTTGATGTT+GGG | 0.431033 | 8.1:-55636116 | MS.gene43012:CDS |
| GATTTCATCAAGTTTGATGT+TGG | 0.434771 | 8.1:-55636117 | MS.gene43012:CDS |
| TGCGACCATCATAGGTGTTA+AGG | 0.437039 | 8.1:+55636214 | None:intergenic |
| TTTGTCAAGCATCCAATGCT+TGG | 0.437860 | 8.1:+55637753 | None:intergenic |
| CCATCATAGGTGTTAAGGTA+TGG | 0.437978 | 8.1:+55636219 | None:intergenic |
| ACGGATAGTGCGACCATCAT+AGG | 0.439814 | 8.1:+55636206 | None:intergenic |
| GTGGAGACGGAAGCGGCCTT+TGG | 0.446180 | 8.1:+55636718 | None:intergenic |
| TCCTTGTTGACGGCAAAGTC+AGG | 0.447044 | 8.1:-55637506 | MS.gene43012:CDS |
| CAAGAACAGGGAGAAACATA+AGG | 0.450490 | 8.1:-55636043 | MS.gene43012:CDS |
| GTGTCGTTAGCCCTGATGAC+GGG | 0.455832 | 8.1:+55636174 | None:intergenic |
| CATTGGATGCTTGACAAATT+GGG | 0.462746 | 8.1:-55637748 | MS.gene43012:CDS |
| CAACGACATGTCCTTGTTGA+CGG | 0.463122 | 8.1:-55637516 | MS.gene43012:CDS |
| GTGTTGGAGTGATCAAGAAC+AGG | 0.464559 | 8.1:-55636056 | MS.gene43012:CDS |
| TAGCCCTGATGACGGGGTCT+GGG | 0.473190 | 8.1:+55636181 | None:intergenic |
| TGAGAATAGCAATGACTTCA+CGG | 0.475445 | 8.1:+55637541 | None:intergenic |
| AGCTTAATACCCTTACCCTT+GGG | 0.483433 | 8.1:+55635913 | None:intergenic |
| TTACAGTCATTGAGGAAGCT+AGG | 0.485211 | 8.1:-55635891 | MS.gene43012:CDS |
| GGTATCTCTTCCCAAGGGTA+AGG | 0.487613 | 8.1:-55635923 | MS.gene43012:CDS |
| AAGCTTAATACCCTTACCCT+TGG | 0.502359 | 8.1:+55635912 | None:intergenic |
| TAGGCTCCAAAACCCTCGTC+AGG | 0.512287 | 8.1:-55637636 | MS.gene43012:CDS |
| ACTTATCCAGCTGGATTCAT+GGG | 0.514100 | 8.1:-55637474 | MS.gene43012:intron |
| CCATACCTTAACACCTATGA+TGG | 0.520450 | 8.1:-55636219 | MS.gene43012:CDS |
| GGCTAACGACACCATCAAGC+TGG | 0.526110 | 8.1:-55636163 | MS.gene43012:CDS |
| CATCATAGGTGTTAAGGTAT+GGG | 0.527232 | 8.1:+55636220 | None:intergenic |
| TTCATACCCATGAATCCAGC+TGG | 0.529071 | 8.1:+55637468 | None:intergenic |
| CTGAACGTGGATTGTCTCAA+AGG | 0.529462 | 8.1:+55636017 | None:intergenic |
| TGATGACGGGGTCTGGGTAA+CGG | 0.533614 | 8.1:+55636187 | None:intergenic |
| CAATGTGTTTACTATTGGCA+AGG | 0.534517 | 8.1:-55635959 | MS.gene43012:CDS |
| TTGGCAAGGGCACAAAGCCA+TGG | 0.537474 | 8.1:-55635945 | MS.gene43012:CDS |
| GGTAAGAATAGGGGACGTGT+TGG | 0.541026 | 8.1:-55636072 | MS.gene43012:CDS |
| AGTCAGAGACGACGAGGCTA+AGG | 0.542760 | 8.1:-55636693 | MS.gene43012:intron |
| TCAGTGCAGTTTGGGCAGAA+AGG | 0.549135 | 8.1:-55636246 | MS.gene43012:CDS |
| AGATTTGTGTGGTCCTGACG+AGG | 0.555265 | 8.1:+55637623 | None:intergenic |
| CGTCTCTGACTGAGTGGAGA+CGG | 0.558927 | 8.1:+55636705 | None:intergenic |
| TATTAAGCTTACAGTCATTG+AGG | 0.561603 | 8.1:-55635899 | MS.gene43012:CDS |
| TCATGAGTTCGCAACTCGAT+TGG | 0.564530 | 8.1:-55635983 | MS.gene43012:CDS |
| TGTCAAGCATCCAATGCTTG+GGG | 0.568821 | 8.1:+55637755 | None:intergenic |
| CACCATCAAGCTGGATCTGG+AGG | 0.579233 | 8.1:-55636154 | MS.gene43012:CDS |
| GCCATGGGTATCTCTTCCCA+AGG | 0.583131 | 8.1:-55635929 | MS.gene43012:CDS |
| TTTCGCAAAATCAAAATGAG+TGG | 0.585832 | 8.1:+55637588 | None:intergenic |
| GTCAGGACCACACAAATCTA+GGG | 0.588053 | 8.1:-55637619 | MS.gene43012:CDS |
| AAGAACAGGGAGAAACATAA+GGG | 0.588644 | 8.1:-55636042 | MS.gene43012:CDS |
| GATTGAAGAAGCATTTGAAG+AGG | 0.590583 | 8.1:-55637786 | MS.gene43012:CDS |
| GATTTGTGTGGTCCTGACGA+GGG | 0.594605 | 8.1:+55637624 | None:intergenic |
| GTATCTCTTCCCAAGGGTAA+GGG | 0.600286 | 8.1:-55635922 | MS.gene43012:CDS |
| TGGCAAGGGCACAAAGCCAT+GGG | 0.601941 | 8.1:-55635944 | MS.gene43012:CDS |
| GGTGTCGTTAGCCCTGATGA+CGG | 0.604149 | 8.1:+55636173 | None:intergenic |
| TCTGCCCAAACTGCACTGAA+CGG | 0.604733 | 8.1:+55636250 | None:intergenic |
| TCCTGACTTTGCCGTCAACA+AGG | 0.608758 | 8.1:+55637505 | None:intergenic |
| AATGTGTTTACTATTGGCAA+GGG | 0.614045 | 8.1:-55635958 | MS.gene43012:CDS |
| ATCCACGTTCAGGATGCCAC+TGG | 0.616221 | 8.1:-55636006 | MS.gene43012:CDS |
| GACCAGTGGCATCCTGAACG+TGG | 0.616751 | 8.1:+55636004 | None:intergenic |
| ACTGACAAGACTTATCCAGC+TGG | 0.621794 | 8.1:-55637483 | MS.gene43012:CDS |
| CCTCGTCGTCTCTGACTGAG+TGG | 0.624746 | 8.1:+55636699 | None:intergenic |
| CTGTGAATGTAACAGGCTAG+AGG | 0.625011 | 8.1:-55637808 | MS.gene43012:intron |
| AGCTAGGAAGAGAGCTGCTG+CGG | 0.626667 | 8.1:-55635875 | MS.gene43012:CDS |
| CTTTGGTATCATAAAGCAGA+CGG | 0.627128 | 8.1:+55636735 | None:intergenic |
| TGACTGAGTGGAGACGGAAG+CGG | 0.632899 | 8.1:+55636711 | None:intergenic |
| TGTCGTTAGCCCTGATGACG+GGG | 0.637880 | 8.1:+55636175 | None:intergenic |
| GTTACTGGTGGTAAGAATAG+GGG | 0.638404 | 8.1:-55636081 | MS.gene43012:CDS |
| CGTCTGCTTTATGATACCAA+AGG | 0.648327 | 8.1:-55636734 | MS.gene43012:CDS |
| GTCAAGCATCCAATGCTTGG+GGG | 0.650283 | 8.1:+55637756 | None:intergenic |
| TTACCCAGACCCCGTCATCA+GGG | 0.650709 | 8.1:-55636184 | MS.gene43012:CDS |
| ATGGCAGTTCAAGCTCTGCA+AGG | 0.650875 | 8.1:-55636274 | MS.gene43012:intron |
| CCCTTGGGAAGAGATACCCA+TGG | 0.652851 | 8.1:+55635928 | None:intergenic |
| AGACATTCCCTAGATTTGTG+TGG | 0.654592 | 8.1:+55637612 | None:intergenic |
| TGTTGGAGTGATCAAGAACA+GGG | 0.673951 | 8.1:-55636055 | MS.gene43012:CDS |
| AACGTCGTTATGGTTACTGG+TGG | 0.680138 | 8.1:-55636093 | MS.gene43012:CDS |
| CCATGGGTATCTCTTCCCAA+GGG | 0.685421 | 8.1:-55635928 | MS.gene43012:CDS |
| TGGATGCTTGACAAATTGGG+TGG | 0.687057 | 8.1:-55637745 | MS.gene43012:CDS |
| CCACTCAGTCAGAGACGACG+AGG | 0.692022 | 8.1:-55636699 | MS.gene43012:CDS |
| AGTTGCGAACTCATGACCAG+TGG | 0.697712 | 8.1:+55635990 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATTCAGTAATCAAATAA+AGG | + | chr8.1:55637269-55637288 | None:intergenic | 15.0% |
| !! | ACTTATGAATAATACATAAA+AGG | - | chr8.1:55636817-55636836 | MS.gene43012:intron | 15.0% |
| !! | TTACTATACATAAATCTTAT+TGG | + | chr8.1:55637424-55637443 | None:intergenic | 15.0% |
| !! | AACAGTTTATGCAAATAAAT+TGG | - | chr8.1:55636712-55636731 | MS.gene43012:CDS | 20.0% |
| !! | TTATAAACAGATTGTGAATA+TGG | + | chr8.1:55635932-55635951 | None:intergenic | 20.0% |
| ! | ATGAAAATGGCAAGAATAAA+CGG | + | chr8.1:55637548-55637567 | None:intergenic | 25.0% |
| ! | ATTTCATCAAGTTTGATGTT+GGG | - | chr8.1:55637818-55637837 | MS.gene43012:intron | 25.0% |
| ! | CAAAATAAGCCTAATAAAGA+CGG | + | chr8.1:55636681-55636700 | None:intergenic | 25.0% |
| ! | CACAGATATCAAACAAAATA+AGG | + | chr8.1:55636111-55636130 | None:intergenic | 25.0% |
| ! | CTCCAATTCATATAATAACA+TGG | + | chr8.1:55637573-55637592 | None:intergenic | 25.0% |
| ! | GTCCATGTTATTATATGAAT+TGG | - | chr8.1:55637568-55637587 | MS.gene43012:CDS | 25.0% |
| ! | TAATAACATGGACATGAAAA+TGG | + | chr8.1:55637561-55637580 | None:intergenic | 25.0% |
| ! | TTGTATCATATTCTGTATTC+TGG | - | chr8.1:55637062-55637081 | MS.gene43012:intron | 25.0% |
| ! | TTGTCTTCAGATAAAATCAT+GGG | + | chr8.1:55636915-55636934 | None:intergenic | 25.0% |
| !! | AAACAAAATAAGGACTTGTT+TGG | + | chr8.1:55636101-55636120 | None:intergenic | 25.0% |
| !! | AACTTTTGATGTATTATAGC+TGG | - | chr8.1:55636613-55636632 | MS.gene43012:intron | 25.0% |
| !! | ACTTTTGATGTATTATAGCT+GGG | - | chr8.1:55636614-55636633 | MS.gene43012:intron | 25.0% |
| !! | GATTGATGTGATTTTTGTAT+AGG | - | chr8.1:55636279-55636298 | MS.gene43012:intron | 25.0% |
| !! | TTTTCAATCTCATTTCGTAA+TGG | - | chr8.1:55635902-55635921 | MS.gene43012:CDS | 25.0% |
| !!! | ATATTTGTATAGAGTGTTGA+AGG | - | chr8.1:55636654-55636673 | MS.gene43012:intron | 25.0% |
| !!! | TATTTGTATAGAGTGTTGAA+GGG | - | chr8.1:55636655-55636674 | MS.gene43012:intron | 25.0% |
| AAAATGTGCATAATCCAAAC+AGG | - | chr8.1:55636874-55636893 | MS.gene43012:intron | 30.0% | |
| AATCATGGGATTCCATTATT+CGG | + | chr8.1:55636901-55636920 | None:intergenic | 30.0% | |
| AATGTGTTTACTATTGGCAA+GGG | - | chr8.1:55637976-55637995 | MS.gene43012:intron | 30.0% | |
| CTGCTTAACATAAAATTCAG+TGG | + | chr8.1:55635964-55635983 | None:intergenic | 30.0% | |
| GATTTCATCAAGTTTGATGT+TGG | - | chr8.1:55637817-55637836 | MS.gene43012:intron | 30.0% | |
| GTTGTCTTCAGATAAAATCA+TGG | + | chr8.1:55636916-55636935 | None:intergenic | 30.0% | |
| TATTAAGCTTACAGTCATTG+AGG | - | chr8.1:55638035-55638054 | MS.gene43012:intron | 30.0% | |
| TTCCTTGTATATGATGTACA+TGG | - | chr8.1:55637641-55637660 | MS.gene43012:intron | 30.0% | |
| TTGATATCTGTGAATGTAAC+AGG | - | chr8.1:55636119-55636138 | MS.gene43012:CDS | 30.0% | |
| TTGGTCAATGTGTTTACTAT+TGG | - | chr8.1:55637970-55637989 | MS.gene43012:intron | 30.0% | |
| TTTCGCAAAATCAAAATGAG+TGG | + | chr8.1:55636349-55636368 | None:intergenic | 30.0% | |
| ! | TGATTTTATCTGAAGACAAC+AGG | - | chr8.1:55636916-55636935 | MS.gene43012:intron | 30.0% |
| ! | TTTGCAATGTTTTTCATGTC+TGG | - | chr8.1:55636993-55637012 | MS.gene43012:intron | 30.0% |
| AACATTCATGACATGAAGCA+CGG | + | chr8.1:55637468-55637487 | None:intergenic | 35.0% | |
| AAGAACAGGGAGAAACATAA+GGG | - | chr8.1:55637892-55637911 | MS.gene43012:intron | 35.0% | |
| CAATGTGTTTACTATTGGCA+AGG | - | chr8.1:55637975-55637994 | MS.gene43012:intron | 35.0% | |
| CATCATAGGTGTTAAGGTAT+GGG | + | chr8.1:55637717-55637736 | None:intergenic | 35.0% | |
| CATTGGATGCTTGACAAATT+GGG | - | chr8.1:55636186-55636205 | MS.gene43012:CDS | 35.0% | |
| CTTTGGTATCATAAAGCAGA+CGG | + | chr8.1:55637202-55637221 | None:intergenic | 35.0% | |
| GTTCTCTGACTCATTTGATT+TGG | - | chr8.1:55637092-55637111 | MS.gene43012:intron | 35.0% | |
| TGAGAATAGCAATGACTTCA+CGG | + | chr8.1:55636396-55636415 | None:intergenic | 35.0% | |
| TGCCATGTACATCATATACA+AGG | + | chr8.1:55637646-55637665 | None:intergenic | 35.0% | |
| TTCATGATTGCTATGAAGCA+CGG | - | chr8.1:55637356-55637375 | MS.gene43012:intron | 35.0% | |
| ! | AGCTGGGTATTGTAAGTAAA+AGG | - | chr8.1:55636630-55636649 | MS.gene43012:intron | 35.0% |
| !! | GATTGAAGAAGCATTTGAAG+AGG | - | chr8.1:55636148-55636167 | MS.gene43012:CDS | 35.0% |
| !!! | GGAAGCTCTCATTTGTTTTA+GGG | + | chr8.1:55637181-55637200 | None:intergenic | 35.0% |
| AAGCTTAATACCCTTACCCT+TGG | + | chr8.1:55638025-55638044 | None:intergenic | 40.0% | |
| ACTTATCCAGCTGGATTCAT+GGG | - | chr8.1:55636460-55636479 | MS.gene43012:intron | 40.0% | |
| AGACATTCCCTAGATTTGTG+TGG | + | chr8.1:55636325-55636344 | None:intergenic | 40.0% | |
| AGCTTAATACCCTTACCCTT+GGG | + | chr8.1:55638024-55638043 | None:intergenic | 40.0% | |
| ATCCAAACAGGTCCGAATAA+TGG | - | chr8.1:55636886-55636905 | MS.gene43012:intron | 40.0% | |
| ATGAAGCACGGATACTGTTA+TGG | - | chr8.1:55637368-55637387 | MS.gene43012:intron | 40.0% | |
| CAAGAACAGGGAGAAACATA+AGG | - | chr8.1:55637891-55637910 | MS.gene43012:intron | 40.0% | |
| CCATACCTTAACACCTATGA+TGG | - | chr8.1:55637715-55637734 | MS.gene43012:intron | 40.0% | |
| CCATCATAGGTGTTAAGGTA+TGG | + | chr8.1:55637718-55637737 | None:intergenic | 40.0% | |
| CGTCTGCTTTATGATACCAA+AGG | - | chr8.1:55637200-55637219 | MS.gene43012:intron | 40.0% | |
| GCATTGGATGCTTGACAAAT+TGG | - | chr8.1:55636185-55636204 | MS.gene43012:CDS | 40.0% | |
| GGTTACTGGTGGTAAGAATA+GGG | - | chr8.1:55637852-55637871 | MS.gene43012:intron | 40.0% | |
| GTTACTGGTGGTAAGAATAG+GGG | - | chr8.1:55637853-55637872 | MS.gene43012:intron | 40.0% | |
| TGGTTACTGGTGGTAAGAAT+AGG | - | chr8.1:55637851-55637870 | MS.gene43012:intron | 40.0% | |
| TGTTGGAGTGATCAAGAACA+GGG | - | chr8.1:55637879-55637898 | MS.gene43012:intron | 40.0% | |
| TTACAGTCATTGAGGAAGCT+AGG | - | chr8.1:55638043-55638062 | MS.gene43012:intron | 40.0% | |
| TTCCATTATTCGGACCTGTT+TGG | + | chr8.1:55636891-55636910 | None:intergenic | 40.0% | |
| TTGTCAAGCATCCAATGCTT+GGG | + | chr8.1:55636183-55636202 | None:intergenic | 40.0% | |
| TTTGTCAAGCATCCAATGCT+TGG | + | chr8.1:55636184-55636203 | None:intergenic | 40.0% | |
| !! | CGGAAGCTCTCATTTGTTTT+AGG | + | chr8.1:55637182-55637201 | None:intergenic | 40.0% |
| !! | TGACTCATTTGATTTGGCTG+TGG | - | chr8.1:55637098-55637117 | MS.gene43012:intron | 40.0% |
| AACGTCGTTATGGTTACTGG+TGG | - | chr8.1:55637841-55637860 | MS.gene43012:intron | 45.0% | |
| ACTGACAAGACTTATCCAGC+TGG | - | chr8.1:55636451-55636470 | MS.gene43012:intron | 45.0% | |
| CAACGACATGTCCTTGTTGA+CGG | - | chr8.1:55636418-55636437 | MS.gene43012:intron | 45.0% | |
| CATGAAGCACGGACACTAAT+CGG | + | chr8.1:55637457-55637476 | None:intergenic | 45.0% | |
| CTGTGAATGTAACAGGCTAG+AGG | - | chr8.1:55636126-55636145 | MS.gene43012:CDS | 45.0% | |
| GACTTATCCAGCTGGATTCA+TGG | - | chr8.1:55636459-55636478 | MS.gene43012:intron | 45.0% | |
| GTATCTCTTCCCAAGGGTAA+GGG | - | chr8.1:55638012-55638031 | MS.gene43012:intron | 45.0% | |
| GTCAGGACCACACAAATCTA+GGG | - | chr8.1:55636315-55636334 | MS.gene43012:intron | 45.0% | |
| GTGTTGGAGTGATCAAGAAC+AGG | - | chr8.1:55637878-55637897 | MS.gene43012:intron | 45.0% | |
| GTTGAAGGGCCGTCTTTATT+AGG | - | chr8.1:55636669-55636688 | MS.gene43012:intron | 45.0% | |
| TCATGAGTTCGCAACTCGAT+TGG | - | chr8.1:55637951-55637970 | MS.gene43012:intron | 45.0% | |
| TGATGTTGGGAACGTCGTTA+TGG | - | chr8.1:55637831-55637850 | MS.gene43012:intron | 45.0% | |
| TGCGACCATCATAGGTGTTA+AGG | + | chr8.1:55637723-55637742 | None:intergenic | 45.0% | |
| TGGATGCTTGACAAATTGGG+TGG | - | chr8.1:55636189-55636208 | MS.gene43012:CDS | 45.0% | |
| TGTCAAGCATCCAATGCTTG+GGG | + | chr8.1:55636182-55636201 | None:intergenic | 45.0% | |
| TTCATACCCATGAATCCAGC+TGG | + | chr8.1:55636469-55636488 | None:intergenic | 45.0% | |
| ! | CTGAACGTGGATTGTCTCAA+AGG | + | chr8.1:55637920-55637939 | None:intergenic | 45.0% |
| !! | CTTTGAGACAATCCACGTTC+AGG | - | chr8.1:55637918-55637937 | MS.gene43012:intron | 45.0% |
| AAGGTCCGTTCAGTGCAGTT+TGG | - | chr8.1:55637679-55637698 | MS.gene43012:intron | 50.0% | |
| ACGGATAGTGCGACCATCAT+AGG | + | chr8.1:55637731-55637750 | None:intergenic | 50.0% | |
| AGATTTGTGTGGTCCTGACG+AGG | + | chr8.1:55636314-55636333 | None:intergenic | 50.0% | |
| AGGTCCGTTCAGTGCAGTTT+GGG | - | chr8.1:55637680-55637699 | MS.gene43012:intron | 50.0% | |
| AGTTGCGAACTCATGACCAG+TGG | + | chr8.1:55637947-55637966 | None:intergenic | 50.0% | |
| ATGGCAGTTCAAGCTCTGCA+AGG | - | chr8.1:55637660-55637679 | MS.gene43012:intron | 50.0% | |
| CCATGGGTATCTCTTCCCAA+GGG | - | chr8.1:55638006-55638025 | MS.gene43012:intron | 50.0% | |
| CGTCAGGACCACACAAATCT+AGG | - | chr8.1:55636314-55636333 | MS.gene43012:intron | 50.0% | |
| GATTTGTGTGGTCCTGACGA+GGG | + | chr8.1:55636313-55636332 | None:intergenic | 50.0% | |
| GGGAACGTCGTTATGGTTAC+TGG | - | chr8.1:55637838-55637857 | MS.gene43012:intron | 50.0% | |
| GGTAAGAATAGGGGACGTGT+TGG | - | chr8.1:55637862-55637881 | MS.gene43012:intron | 50.0% | |
| GGTATCTCTTCCCAAGGGTA+AGG | - | chr8.1:55638011-55638030 | MS.gene43012:intron | 50.0% | |
| GTCAAGCATCCAATGCTTGG+GGG | + | chr8.1:55636181-55636200 | None:intergenic | 50.0% | |
| TCAGTGCAGTTTGGGCAGAA+AGG | - | chr8.1:55637688-55637707 | MS.gene43012:intron | 50.0% | |
| TCCTGACTTTGCCGTCAACA+AGG | + | chr8.1:55636432-55636451 | None:intergenic | 50.0% | |
| TCCTTGTTGACGGCAAAGTC+AGG | - | chr8.1:55636428-55636447 | MS.gene43012:intron | 50.0% | |
| TCTGCCCAAACTGCACTGAA+CGG | + | chr8.1:55637687-55637706 | None:intergenic | 50.0% | |
| TTCCTCCAGATCCAGCTTGA+TGG | + | chr8.1:55637785-55637804 | None:intergenic | 50.0% | |
| ! | GCACGGACACTAATCGGTTT+AGG | + | chr8.1:55637451-55637470 | None:intergenic | 50.0% |
| AGCTAGGAAGAGAGCTGCTG+CGG | - | chr8.1:55638059-55638078 | MS.gene43012:intron | 55.0% | |
| AGTCAGAGACGACGAGGCTA+AGG | - | chr8.1:55637241-55637260 | MS.gene43012:intron | 55.0% | |
| ATCCACGTTCAGGATGCCAC+TGG | - | chr8.1:55637928-55637947 | MS.gene43012:intron | 55.0% | |
| CACCATCAAGCTGGATCTGG+AGG | - | chr8.1:55637780-55637799 | MS.gene43012:CDS | 55.0% | |
| CCCTTGGGAAGAGATACCCA+TGG | + | chr8.1:55638009-55638028 | None:intergenic | 55.0% | |
| CGACACCATCAAGCTGGATC+TGG | - | chr8.1:55637777-55637796 | MS.gene43012:CDS | 55.0% | |
| CGTCTCTGACTGAGTGGAGA+CGG | + | chr8.1:55637232-55637251 | None:intergenic | 55.0% | |
| GCCATGGGTATCTCTTCCCA+AGG | - | chr8.1:55638005-55638024 | MS.gene43012:intron | 55.0% | |
| GGCTAACGACACCATCAAGC+TGG | - | chr8.1:55637771-55637790 | MS.gene43012:CDS | 55.0% | |
| TAGGCTCCAAAACCCTCGTC+AGG | - | chr8.1:55636298-55636317 | MS.gene43012:intron | 55.0% | |
| TGACTGAGTGGAGACGGAAG+CGG | + | chr8.1:55637226-55637245 | None:intergenic | 55.0% | |
| TTACCCAGACCCCGTCATCA+GGG | - | chr8.1:55637750-55637769 | MS.gene43012:CDS | 55.0% | |
| ! | GTGTCGTTAGCCCTGATGAC+GGG | + | chr8.1:55637763-55637782 | None:intergenic | 55.0% |
| ! | TGGCAAGGGCACAAAGCCAT+GGG | - | chr8.1:55637990-55638009 | MS.gene43012:intron | 55.0% |
| ! | TGTCGTTAGCCCTGATGACG+GGG | + | chr8.1:55637762-55637781 | None:intergenic | 55.0% |
| ! | TGTGGTCCTGACGAGGGTTT+TGG | + | chr8.1:55636307-55636326 | None:intergenic | 55.0% |
| ! | TTGGCAAGGGCACAAAGCCA+TGG | - | chr8.1:55637989-55638008 | MS.gene43012:intron | 55.0% |
| !! | GGTGTCGTTAGCCCTGATGA+CGG | + | chr8.1:55637764-55637783 | None:intergenic | 55.0% |
| !! | TGATGACGGGGTCTGGGTAA+CGG | + | chr8.1:55637750-55637769 | None:intergenic | 55.0% |
| CCACTCAGTCAGAGACGACG+AGG | - | chr8.1:55637235-55637254 | MS.gene43012:intron | 60.0% | |
| CCTCGTCGTCTCTGACTGAG+TGG | + | chr8.1:55637238-55637257 | None:intergenic | 60.0% | |
| GACCAGTGGCATCCTGAACG+TGG | + | chr8.1:55637933-55637952 | None:intergenic | 60.0% | |
| GGCTCAATGCCCCCAAGCAT+TGG | - | chr8.1:55636169-55636188 | MS.gene43012:CDS | 60.0% | |
| GTTACCCAGACCCCGTCATC+AGG | - | chr8.1:55637749-55637768 | MS.gene43012:CDS | 60.0% | |
| !! | TAGCCCTGATGACGGGGTCT+GGG | + | chr8.1:55637756-55637775 | None:intergenic | 60.0% |
| !! | TTAGCCCTGATGACGGGGTC+TGG | + | chr8.1:55637757-55637776 | None:intergenic | 60.0% |
| GTGGAGACGGAAGCGGCCTT+TGG | + | chr8.1:55637219-55637238 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 55635852 | 55638104 | 55635852 | ID=MS.gene43012 |
| chr8.1 | mRNA | 55635852 | 55638104 | 55635852 | ID=MS.gene43012.t1;Parent=MS.gene43012 |
| chr8.1 | exon | 55638102 | 55638104 | 55638102 | ID=MS.gene43012.t1.exon1;Parent=MS.gene43012.t1 |
| chr8.1 | CDS | 55638102 | 55638104 | 55638102 | ID=cds.MS.gene43012.t1;Parent=MS.gene43012.t1 |
| chr8.1 | exon | 55637738 | 55637815 | 55637738 | ID=MS.gene43012.t1.exon2;Parent=MS.gene43012.t1 |
| chr8.1 | CDS | 55637738 | 55637815 | 55637738 | ID=cds.MS.gene43012.t1;Parent=MS.gene43012.t1 |
| chr8.1 | exon | 55637475 | 55637655 | 55637475 | ID=MS.gene43012.t1.exon3;Parent=MS.gene43012.t1 |
| chr8.1 | CDS | 55637475 | 55637655 | 55637475 | ID=cds.MS.gene43012.t1;Parent=MS.gene43012.t1 |
| chr8.1 | exon | 55636694 | 55636791 | 55636694 | ID=MS.gene43012.t1.exon4;Parent=MS.gene43012.t1 |
| chr8.1 | CDS | 55636694 | 55636791 | 55636694 | ID=cds.MS.gene43012.t1;Parent=MS.gene43012.t1 |
| chr8.1 | exon | 55635852 | 55636289 | 55635852 | ID=MS.gene43012.t1.exon5;Parent=MS.gene43012.t1 |
| chr8.1 | CDS | 55635852 | 55636289 | 55635852 | ID=cds.MS.gene43012.t1;Parent=MS.gene43012.t1 |
| Gene Sequence |
| Protein sequence |
