Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071029.t1 | XP_003623356.1 | 97.4 | 265 | 7 | 0 | 1 | 265 | 1 | 265 | 4.50E-145 | 523.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071029.t1 | Q93VH9 | 91.2 | 260 | 23 | 0 | 1 | 260 | 1 | 260 | 1.5e-141 | 503.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071029.t1 | G7KT73 | 97.4 | 265 | 7 | 0 | 1 | 265 | 1 | 265 | 3.2e-145 | 523.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene071029 | MS.gene38870 | PPI |
| MS.gene59369 | MS.gene071029 | PPI |
| MS.gene95672 | MS.gene071029 | PPI |
| MS.gene071029 | MS.gene032440 | PPI |
| MS.gene071029 | MS.gene053443 | PPI |
| MS.gene071029 | MS.gene83444 | PPI |
| MS.gene74487 | MS.gene071029 | PPI |
| MS.gene047717 | MS.gene071029 | PPI |
| MS.gene071029 | MS.gene52173 | PPI |
| MS.gene82426 | MS.gene071029 | PPI |
| MS.gene43012 | MS.gene071029 | PPI |
| MS.gene028153 | MS.gene071029 | PPI |
| MS.gene041181 | MS.gene071029 | PPI |
| MS.gene071029 | MS.gene073888 | PPI |
| MS.gene035447 | MS.gene071029 | PPI |
| MS.gene023799 | MS.gene071029 | PPI |
| MS.gene071029 | MS.gene99501 | PPI |
| MS.gene42236 | MS.gene071029 | PPI |
| MS.gene38870 | MS.gene071029 | PPI |
| MS.gene27648 | MS.gene071029 | PPI |
| MS.gene069005 | MS.gene071029 | PPI |
| MS.gene53517 | MS.gene071029 | PPI |
| MS.gene071029 | MS.gene72768 | PPI |
| MS.gene071029 | MS.gene010439 | PPI |
| MS.gene071029 | MS.gene035447 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071029.t1 | MTR_7g069950 | 97.358 | 265 | 7 | 0 | 1 | 265 | 1 | 265 | 0.0 | 533 |
| MS.gene071029.t1 | MTR_4g014590 | 96.591 | 264 | 9 | 0 | 1 | 264 | 1 | 264 | 0.0 | 527 |
| MS.gene071029.t1 | MTR_5g018940 | 96.414 | 251 | 9 | 0 | 1 | 251 | 1 | 251 | 0.0 | 504 |
| MS.gene071029.t1 | MTR_5g018940 | 96.414 | 251 | 9 | 0 | 1 | 251 | 1 | 251 | 0.0 | 504 |
| MS.gene071029.t1 | MTR_8g052030 | 96.414 | 251 | 9 | 0 | 1 | 251 | 1 | 251 | 0.0 | 504 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene071029.t1 | AT5G07090 | 91.255 | 263 | 22 | 1 | 1 | 263 | 1 | 262 | 0.0 | 510 |
| MS.gene071029.t1 | AT2G17360 | 91.154 | 260 | 23 | 0 | 1 | 260 | 1 | 260 | 0.0 | 509 |
| MS.gene071029.t1 | AT5G58420 | 91.255 | 263 | 22 | 1 | 1 | 263 | 1 | 262 | 0.0 | 509 |
| MS.gene071029.t1 | AT5G07090 | 90.612 | 245 | 22 | 1 | 19 | 263 | 1 | 244 | 7.36e-171 | 471 |
| MS.gene071029.t1 | AT5G07090 | 90.612 | 245 | 22 | 1 | 19 | 263 | 1 | 244 | 7.36e-171 | 471 |
| MS.gene071029.t1 | AT2G17360 | 91.713 | 181 | 15 | 0 | 1 | 181 | 1 | 181 | 6.78e-126 | 355 |
Find 84 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTGTCATTGGCCTTAATA+AGG | 0.244306 | 7.3:+34925567 | None:intergenic |
| GTCTAGTTTGATTGTGTCAT+TGG | 0.330535 | 7.3:+34925556 | None:intergenic |
| CAATTTGATACCTCTGCCTT+TGG | 0.334135 | 7.3:+34925307 | None:intergenic |
| CTATCCTGATCCCCTTATTA+AGG | 0.341569 | 7.3:-34925579 | MS.gene071029:CDS |
| CACATCAAATTTGATGAAAT+CGG | 0.353228 | 7.3:+34925514 | None:intergenic |
| AAGGTACGATCTGTTCAGTT+TGG | 0.367239 | 7.3:-34925650 | MS.gene071029:CDS |
| CAGCGCCATGTTCTAGTTGA+TGG | 0.370577 | 7.3:-34926144 | MS.gene071029:CDS |
| TGTGGTCCAGATGACGGCTT+TGG | 0.371859 | 7.3:+34926258 | None:intergenic |
| AGGTACGATCTGTTCAGTTT+GGG | 0.392472 | 7.3:-34925649 | MS.gene071029:CDS |
| GTGGTCCAGATGACGGCTTT+GGG | 0.392493 | 7.3:+34926259 | None:intergenic |
| TGATGTGGGGAATGTTGTTA+TGG | 0.412773 | 7.3:-34925498 | MS.gene071029:CDS |
| CATGAGTTTGCAACCCGATT+GGG | 0.418547 | 7.3:-34925377 | MS.gene071029:CDS |
| GGGAATGTTGTTATGGTGAC+TGG | 0.420835 | 7.3:-34925491 | MS.gene071029:CDS |
| TTCTAGTTGATGGCAAAGTT+AGG | 0.423367 | 7.3:-34926134 | MS.gene071029:CDS |
| GCGGATTGTACGCCCATCAT+AGG | 0.425274 | 7.3:+34925601 | None:intergenic |
| TGTGTCATTGGCCTTAATAA+GGG | 0.427302 | 7.3:+34925568 | None:intergenic |
| CAGGCCCCAAAGCCGTCATC+TGG | 0.431538 | 7.3:-34926264 | MS.gene071029:CDS |
| GCGGATGGCTGCTTCTCAAC+AGG | 0.434949 | 7.3:-34925261 | MS.gene071029:CDS |
| CCGTATCTGAACACCTATGA+TGG | 0.435718 | 7.3:-34925614 | MS.gene071029:CDS |
| TTGGCAAAGGTTCGAAACCT+TGG | 0.443017 | 7.3:-34925340 | MS.gene071029:CDS |
| TTATCAAGCATCCAATGCTT+TGG | 0.443903 | 7.3:+34926399 | None:intergenic |
| AATTTGATACCTCTGCCTTT+GGG | 0.446445 | 7.3:+34925308 | None:intergenic |
| CTGTTCAGTTTGGGCAGAAA+GGG | 0.449618 | 7.3:-34925640 | MS.gene071029:CDS |
| TTAGTCTGTTCCTCAAGATA+AGG | 0.453432 | 7.3:+34926208 | None:intergenic |
| TGGCAAAGGTTCGAAACCTT+GGG | 0.458266 | 7.3:-34925339 | MS.gene071029:CDS |
| CATCTGGACCACACAAATCA+AGG | 0.461785 | 7.3:-34926248 | MS.gene071029:CDS |
| GATTCCGTCTCCACTCTGTA+AGG | 0.474226 | 7.3:-34925832 | MS.gene071029:CDS |
| CGTCTTCTCTATGACACTAA+AGG | 0.477358 | 7.3:-34925857 | MS.gene071029:CDS |
| TTGGGTAATGTCTTCACCAT+TGG | 0.482231 | 7.3:-34925359 | MS.gene071029:CDS |
| TTGGCCTTAATAAGGGGATC+AGG | 0.486385 | 7.3:+34925575 | None:intergenic |
| TGGTGAAGACATTACCCAAT+CGG | 0.492186 | 7.3:+34925363 | None:intergenic |
| TCTGTTCAGTTTGGGCAGAA+AGG | 0.500744 | 7.3:-34925641 | MS.gene071029:CDS |
| CGATTTCATCAAATTTGATG+TGG | 0.506182 | 7.3:-34925513 | MS.gene071029:CDS |
| ATTCATGTCCAGGATGCTAC+TGG | 0.515866 | 7.3:-34925401 | MS.gene071029:CDS |
| TCATGAGTTTGCAACCCGAT+TGG | 0.519695 | 7.3:-34925378 | MS.gene071029:CDS |
| ACTCATGACCAGTAGCATCC+TGG | 0.521067 | 7.3:+34925393 | None:intergenic |
| GGTGAAGACATTACCCAATC+GGG | 0.525214 | 7.3:+34925364 | None:intergenic |
| GATTTCATCAAATTTGATGT+GGG | 0.526677 | 7.3:-34925512 | MS.gene071029:CDS |
| TGCCGTTGATCCTTATCTTG+AGG | 0.528952 | 7.3:-34926218 | MS.gene071029:CDS |
| GGCTCAATGCTCCAAAGCAT+TGG | 0.529449 | 7.3:-34926410 | MS.gene071029:CDS |
| CCATCATAGGTGTTCAGATA+CGG | 0.529767 | 7.3:+34925614 | None:intergenic |
| TGACACAATCAAACTAGACT+TGG | 0.533545 | 7.3:-34925552 | MS.gene071029:CDS |
| AGGTTTCGAACCTTTGCCAA+TGG | 0.539790 | 7.3:+34925343 | None:intergenic |
| AATGTCTTCACCATTGGCAA+AGG | 0.551816 | 7.3:-34925353 | MS.gene071029:CDS |
| AGTAGCATCCTGGACATGAA+TGG | 0.557858 | 7.3:+34925403 | None:intergenic |
| CATTGGATGCTTGATAAGCT+TGG | 0.558832 | 7.3:-34926393 | MS.gene071029:CDS |
| TCTCGTGTATTTCAGGCAAG+AGG | 0.559812 | 7.3:-34926453 | MS.gene071029:intron |
| TGGATGCTTGATAAGCTTGG+TGG | 0.561385 | 7.3:-34926390 | MS.gene071029:CDS |
| TGACCGTCATTGAGGAGGCT+AGG | 0.563524 | 7.3:-34925286 | MS.gene071029:CDS |
| CCCATACCCATAAAACCAGC+AGG | 0.563703 | 7.3:+34926096 | None:intergenic |
| GATTTGTGTGGTCCAGATGA+CGG | 0.567229 | 7.3:+34926252 | None:intergenic |
| ATTTCATCAAATTTGATGTG+GGG | 0.571477 | 7.3:-34925511 | MS.gene071029:CDS |
| GTGTCATTGGCCTTAATAAG+GGG | 0.578877 | 7.3:+34925569 | None:intergenic |
| TCAAGATAAGGATCAACGGC+AGG | 0.583177 | 7.3:+34926220 | None:intergenic |
| CATCCCTTACAGAGTGGAGA+CGG | 0.583231 | 7.3:+34925828 | None:intergenic |
| CTTTAGTGTCATAGAGAAGA+CGG | 0.588339 | 7.3:+34925858 | None:intergenic |
| TATCAAATTGACCGTCATTG+AGG | 0.588863 | 7.3:-34925294 | MS.gene071029:CDS |
| AACATGGCGCTGCATCAAGA+TGG | 0.592027 | 7.3:+34926155 | None:intergenic |
| CGTATCTGAACACCTATGAT+GGG | 0.593211 | 7.3:-34925613 | MS.gene071029:CDS |
| AGGCACTCCCTTGATTTGTG+TGG | 0.597394 | 7.3:+34926240 | None:intergenic |
| GTTGCAGTTTAAGCTTTGCA+AGG | 0.598067 | 7.3:-34925669 | MS.gene071029:intron |
| CTTCCTAGCCTCCTCAATGA+CGG | 0.598313 | 7.3:+34925283 | None:intergenic |
| CTTCATCATCCCTTACAGAG+TGG | 0.602533 | 7.3:+34925822 | None:intergenic |
| TGTAAGGGATGATGAAGCAA+AGG | 0.603418 | 7.3:-34925816 | MS.gene071029:intron |
| ATTCCGTCTCCACTCTGTAA+GGG | 0.605035 | 7.3:-34925831 | MS.gene071029:CDS |
| GTTTGAAGAAACATTTGAAG+CGG | 0.606217 | 7.3:-34926431 | MS.gene071029:CDS |
| GATGGCTGCTTCTCAACAGG+TGG | 0.606348 | 7.3:-34925258 | MS.gene071029:CDS |
| GTGTCTCTTCCCAAAGGCAG+AGG | 0.606870 | 7.3:-34925317 | MS.gene071029:CDS |
| CTTTGCCATCAACTAGAACA+TGG | 0.608587 | 7.3:+34926139 | None:intergenic |
| GGAAGGAACAGAGGTCGTGT+TGG | 0.620629 | 7.3:-34925467 | MS.gene071029:CDS |
| TCATTGAGGAGGCTAGGAAG+CGG | 0.621155 | 7.3:-34925280 | MS.gene071029:CDS |
| TTCCTCAAGATAAGGATCAA+CGG | 0.626091 | 7.3:+34926216 | None:intergenic |
| CAAATTGACCGTCATTGAGG+AGG | 0.630124 | 7.3:-34925291 | MS.gene071029:CDS |
| ATCTGGACCACACAAATCAA+GGG | 0.632532 | 7.3:-34926247 | MS.gene071029:CDS |
| TGGTCCAGATGACGGCTTTG+GGG | 0.632723 | 7.3:+34926260 | None:intergenic |
| TGAGGAGGCTAGGAAGCGGA+TGG | 0.633594 | 7.3:-34925276 | MS.gene071029:CDS |
| ACAGACAAGACATATCCTGC+TGG | 0.635500 | 7.3:-34926111 | MS.gene071029:CDS |
| CCTTGGGTGTCTCTTCCCAA+AGG | 0.641736 | 7.3:-34925323 | MS.gene071029:CDS |
| TAATAAGGGGATCAGGATAG+CGG | 0.659430 | 7.3:+34925582 | None:intergenic |
| CCTTTGGGAAGAGACACCCA+AGG | 0.673569 | 7.3:+34925323 | None:intergenic |
| TTGTTATGGTGACTGGAGGA+AGG | 0.681094 | 7.3:-34925484 | MS.gene071029:CDS |
| AATGTTGTTATGGTGACTGG+AGG | 0.681623 | 7.3:-34925488 | MS.gene071029:CDS |
| AAGAACAGAGAAAAGCACAA+AGG | 0.704006 | 7.3:-34925437 | MS.gene071029:CDS |
| GTGACTGGAGGAAGGAACAG+AGG | 0.708346 | 7.3:-34925476 | MS.gene071029:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAAAATCAATATAAAGA+AGG | + | chr7.3:34928248-34928267 | None:intergenic | 10.0% |
| !!! | AAAAAAATCTAGAATTTATT+TGG | + | chr7.3:34925963-34925982 | None:intergenic | 10.0% |
| !!! | AATTTTTTACTTTGAATAAT+TGG | - | chr7.3:34927927-34927946 | MS.gene071029:intron | 10.0% |
| !!! | ATCAAATTTTTTTTAGTAAA+TGG | - | chr7.3:34925885-34925904 | MS.gene071029:CDS | 10.0% |
| !! | AAATATTATAGATATTGTGA+AGG | + | chr7.3:34928178-34928197 | None:intergenic | 15.0% |
| !! | ATGTTCAATATGTATAAAAA+AGG | + | chr7.3:34926031-34926050 | None:intergenic | 15.0% |
| !!! | ATTTTTTTTTCAAAAACATG+TGG | - | chr7.3:34925836-34925855 | MS.gene071029:CDS | 15.0% |
| !!! | TTTTTTTAGTTTTCTTTACT+GGG | - | chr7.3:34926127-34926146 | MS.gene071029:CDS | 15.0% |
| !!! | TTTTTTTTAGTTTTCTTTAC+TGG | - | chr7.3:34926126-34926145 | MS.gene071029:CDS | 15.0% |
| !! | AAAATTTCCAACATTATCAA+TGG | + | chr7.3:34926243-34926262 | None:intergenic | 20.0% |
| !! | AAATAATATAAACAACACAG+TGG | + | chr7.3:34927620-34927639 | None:intergenic | 20.0% |
| !! | AAATGCAAAAACAAAAATAG+TGG | + | chr7.3:34926219-34926238 | None:intergenic | 20.0% |
| !! | AAGCCAAAATAAATAAAGTA+TGG | + | chr7.3:34926322-34926341 | None:intergenic | 20.0% |
| !! | AAGTCATCAAACATTATTAA+TGG | + | chr7.3:34927028-34927047 | None:intergenic | 20.0% |
| !! | AATTTATATAAACTACATGC+TGG | - | chr7.3:34928220-34928239 | MS.gene071029:intron | 20.0% |
| !! | AGCCAAAATAAATAAAGTAT+GGG | + | chr7.3:34926321-34926340 | None:intergenic | 20.0% |
| !! | ATGATTCTTGTCTAATAAAT+AGG | - | chr7.3:34926151-34926170 | MS.gene071029:CDS | 20.0% |
| !! | ATTATAGACATTAATGATGT+AGG | - | chr7.3:34927177-34927196 | MS.gene071029:intron | 20.0% |
| !! | CTTAAAATTATTTGTAGATG+TGG | - | chr7.3:34927220-34927239 | MS.gene071029:intron | 20.0% |
| !! | GAATATTAGGAATATTAGAT+GGG | - | chr7.3:34925451-34925470 | MS.gene071029:CDS | 20.0% |
| !! | GAGATTATTCAAATCTAAAT+TGG | + | chr7.3:34925618-34925637 | None:intergenic | 20.0% |
| !! | TTAAAGCTAAAACAAACATA+TGG | - | chr7.3:34925999-34926018 | MS.gene071029:intron | 20.0% |
| !! | TTTGACATTGTAAATAATCT+CGG | - | chr7.3:34926580-34926599 | MS.gene071029:intron | 20.0% |
| !!! | AACATAAAATGTGTTGTTAT+TGG | - | chr7.3:34926453-34926472 | MS.gene071029:intron | 20.0% |
| !!! | AGAGACATTTTAAATAATCT+CGG | - | chr7.3:34925546-34925565 | MS.gene071029:CDS | 20.0% |
| !!! | ATTGAATTTATTTGTTGTAC+AGG | - | chr7.3:34927675-34927694 | MS.gene071029:intron | 20.0% |
| !!! | ATTTTTGTTGATTGTAATGT+TGG | - | chr7.3:34925328-34925347 | MS.gene071029:CDS | 20.0% |
| !!! | CACATCTACAAATAATTTTA+AGG | + | chr7.3:34927222-34927241 | None:intergenic | 20.0% |
| !!! | CTTTTTTAGTTAGGAATATT+AGG | - | chr7.3:34925438-34925457 | MS.gene071029:CDS | 20.0% |
| !!! | TATGTGATTCTTTTTTAGTT+AGG | - | chr7.3:34925429-34925448 | MS.gene071029:CDS | 20.0% |
| !!! | TATTGAACATATTTTTAGTC+TGG | - | chr7.3:34926041-34926060 | MS.gene071029:intron | 20.0% |
| !!! | TCTAATTGATTTAGATTAGA+CGG | - | chr7.3:34926665-34926684 | MS.gene071029:intron | 20.0% |
| !!! | TTTTAGTAAATGGTTTTTCT+AGG | - | chr7.3:34925895-34925914 | MS.gene071029:CDS | 20.0% |
| !!! | TTTTTGTTGATTGTAATGTT+GGG | - | chr7.3:34925329-34925348 | MS.gene071029:CDS | 20.0% |
| ! | ATACTAGCAAAATTCTCAAA+TGG | + | chr7.3:34927965-34927984 | None:intergenic | 25.0% |
| ! | ATTTCATCAAATTTGATGTG+GGG | - | chr7.3:34928447-34928466 | MS.gene071029:intron | 25.0% |
| ! | CACATCAAATTTGATGAAAT+CGG | + | chr7.3:34928447-34928466 | None:intergenic | 25.0% |
| ! | GATTTCATCAAATTTGATGT+GGG | - | chr7.3:34928446-34928465 | MS.gene071029:intron | 25.0% |
| ! | GGAATATTAGGAATATTAGA+TGG | - | chr7.3:34925450-34925469 | MS.gene071029:CDS | 25.0% |
| ! | TTTAGACAATATAACCAAGT+AGG | - | chr7.3:34927984-34928003 | MS.gene071029:intron | 25.0% |
| !! | TATCTGTGTAATTTTGTATG+TGG | - | chr7.3:34926387-34926406 | MS.gene071029:CDS | 25.0% |
| !!! | CACCCATACTTTATTTATTT+TGG | - | chr7.3:34926316-34926335 | MS.gene071029:intron | 25.0% |
| !!! | GAATCATTTTTTGACTCAAA+TGG | - | chr7.3:34925781-34925800 | MS.gene071029:intron | 25.0% |
| !!! | GTTTTTTGAGTACTTTGATT+TGG | - | chr7.3:34926087-34926106 | MS.gene071029:intron | 25.0% |
| !!! | TCTGTTTGATTTTTATTAGC+TGG | - | chr7.3:34926353-34926372 | MS.gene071029:intron | 25.0% |
| !!! | TGTAATGTTGGGTTTTATTT+TGG | - | chr7.3:34925340-34925359 | MS.gene071029:CDS | 25.0% |
| !!! | TTTTTTCTAATGTTGTCTAC+TGG | - | chr7.3:34926506-34926525 | MS.gene071029:intron | 25.0% |
| AAACCTAGATTGAGAAAGAA+AGG | + | chr7.3:34927324-34927343 | None:intergenic | 30.0% | |
| AATTATTTGTAGATGTGGCT+AGG | - | chr7.3:34927225-34927244 | MS.gene071029:intron | 30.0% | |
| ACATAACACATTCTCCAAAT+TGG | - | chr7.3:34926628-34926647 | MS.gene071029:intron | 30.0% | |
| CGATTTCATCAAATTTGATG+TGG | - | chr7.3:34928445-34928464 | MS.gene071029:intron | 30.0% | |
| GAGTTTATTTCAAGCCAATT+TGG | + | chr7.3:34926645-34926664 | None:intergenic | 30.0% | |
| GTTTGAAGAAACATTTGAAG+CGG | - | chr7.3:34927527-34927546 | MS.gene071029:intron | 30.0% | |
| TACAGTTAAAACAGAGAATC+TGG | + | chr7.3:34926552-34926571 | None:intergenic | 30.0% | |
| TGTTGAGATCGATAACTTTA+TGG | - | chr7.3:34925659-34925678 | MS.gene071029:CDS | 30.0% | |
| TTTCTAGGTAGTAAACAAAC+AGG | - | chr7.3:34925910-34925929 | MS.gene071029:intron | 30.0% | |
| ! | AAGAAGTGTAATTGTAGTGT+AGG | + | chr7.3:34925266-34925285 | None:intergenic | 30.0% |
| ! | ACTGGTAATGTATTTGTCAA+GGG | - | chr7.3:34926524-34926543 | MS.gene071029:intron | 30.0% |
| ! | AGAAGTGTAATTGTAGTGTA+GGG | + | chr7.3:34925265-34925284 | None:intergenic | 30.0% |
| ! | AGGTTTAAAATCAGTAGACA+CGG | + | chr7.3:34926270-34926289 | None:intergenic | 30.0% |
| ! | TACTGGTAATGTATTTGTCA+AGG | - | chr7.3:34926523-34926542 | MS.gene071029:intron | 30.0% |
| ! | TAGTTTTTCTCGTGTATTTC+AGG | - | chr7.3:34927498-34927517 | MS.gene071029:intron | 30.0% |
| ! | TTTAGAATCACAAACCTACT+TGG | + | chr7.3:34928001-34928020 | None:intergenic | 30.0% |
| !! | AGATGTTTGCTTTTGTCTTA+AGG | - | chr7.3:34926837-34926856 | MS.gene071029:intron | 30.0% |
| !! | TAGTTCTAAGCCTGAAAAAT+TGG | - | chr7.3:34927074-34927093 | MS.gene071029:intron | 30.0% |
| !!! | ATATTTTTAGTCTGGTCTGA+AGG | - | chr7.3:34926049-34926068 | MS.gene071029:intron | 30.0% |
| !!! | TTTATTTTGGCTTAGCTTAC+TGG | - | chr7.3:34926329-34926348 | MS.gene071029:intron | 30.0% |
| AATGAGTGAGAACTTGTATG+CGG | + | chr7.3:34927126-34927145 | None:intergenic | 35.0% | |
| AATTTGATACCTCTGCCTTT+GGG | + | chr7.3:34928653-34928672 | None:intergenic | 35.0% | |
| AGTACTAGTACTAGTAGACA+TGG | + | chr7.3:34927055-34927074 | None:intergenic | 35.0% | |
| CTACCTTTCTTTCTCAATCT+AGG | - | chr7.3:34927318-34927337 | MS.gene071029:intron | 35.0% | |
| CTAGATTGAGAAAGAAAGGT+AGG | + | chr7.3:34927320-34927339 | None:intergenic | 35.0% | |
| CTTGACAAAAACATTGTCAG+TGG | + | chr7.3:34925528-34925547 | None:intergenic | 35.0% | |
| CTTTAGTGTCATAGAGAAGA+CGG | + | chr7.3:34928103-34928122 | None:intergenic | 35.0% | |
| GACTCAAATGGAAAGCTATT+AGG | - | chr7.3:34925793-34925812 | MS.gene071029:intron | 35.0% | |
| GATAGAACTGCTCTGATAAA+TGG | - | chr7.3:34925581-34925600 | MS.gene071029:CDS | 35.0% | |
| TAAACTCTATACTCAGCCAA+TGG | + | chr7.3:34926745-34926764 | None:intergenic | 35.0% | |
| TAGCTGTTCACATGATTCAT+CGG | - | chr7.3:34927256-34927275 | MS.gene071029:intron | 35.0% | |
| TAGTACACAGTCTACGTTTA+GGG | - | chr7.3:34925703-34925722 | MS.gene071029:intron | 35.0% | |
| TATCAAATTGACCGTCATTG+AGG | - | chr7.3:34928664-34928683 | MS.gene071029:intron | 35.0% | |
| TCAGAATGATGTCCATACAA+AGG | + | chr7.3:34927596-34927615 | None:intergenic | 35.0% | |
| TGACACAATCAAACTAGACT+TGG | - | chr7.3:34928406-34928425 | MS.gene071029:intron | 35.0% | |
| TTAACAATGCCGTGCAATTT+AGG | + | chr7.3:34927895-34927914 | None:intergenic | 35.0% | |
| TTAGTCTGTTCCTCAAGATA+AGG | + | chr7.3:34927753-34927772 | None:intergenic | 35.0% | |
| TTATCAAGCATCCAATGCTT+TGG | + | chr7.3:34927562-34927581 | None:intergenic | 35.0% | |
| TTCCTCAAGATAAGGATCAA+CGG | + | chr7.3:34927745-34927764 | None:intergenic | 35.0% | |
| ! | AAGAACAGAGAAAAGCACAA+AGG | - | chr7.3:34928521-34928540 | MS.gene071029:intron | 35.0% |
| ! | CTGGTAATGTATTTGTCAAG+GGG | - | chr7.3:34926525-34926544 | MS.gene071029:intron | 35.0% |
| ! | GAGAAGACGGAAATTTTCAT+TGG | + | chr7.3:34928090-34928109 | None:intergenic | 35.0% |
| ! | GCTTAGAACTCCAATTTTTC+AGG | + | chr7.3:34927087-34927106 | None:intergenic | 35.0% |
| ! | GCTTTTGTCTTAAGGTTTCA+GGG | - | chr7.3:34926845-34926864 | MS.gene071029:intron | 35.0% |
| ! | GTCTAGTTTGATTGTGTCAT+TGG | + | chr7.3:34928405-34928424 | None:intergenic | 35.0% |
| ! | TGATTTTAAACCTGCCAACT+TGG | - | chr7.3:34926277-34926296 | MS.gene071029:intron | 35.0% |
| ! | TGCTTTTGTCTTAAGGTTTC+AGG | - | chr7.3:34926844-34926863 | MS.gene071029:intron | 35.0% |
| !! | ACGGAAATTTTCATTGGTCT+TGG | + | chr7.3:34928084-34928103 | None:intergenic | 35.0% |
| !! | GAGTTCTAAGCCTGAAAAAT+TGG | - | chr7.3:34927096-34927115 | MS.gene071029:intron | 35.0% |
| !! | GATGGGTTTTTATTTGAGCT+TGG | - | chr7.3:34925468-34925487 | MS.gene071029:CDS | 35.0% |
| !! | GCATTTGCCATTGATAATGT+TGG | - | chr7.3:34926233-34926252 | MS.gene071029:CDS | 35.0% |
| !! | GTTTTTATTTGAGCTTGGAG+AGG | - | chr7.3:34925473-34925492 | MS.gene071029:CDS | 35.0% |
| !! | TGTGTCATTGGCCTTAATAA+GGG | + | chr7.3:34928393-34928412 | None:intergenic | 35.0% |
| !! | TTCTAGTTGATGGCAAAGTT+AGG | - | chr7.3:34927824-34927843 | MS.gene071029:intron | 35.0% |
| !! | TTGTGTCATTGGCCTTAATA+AGG | + | chr7.3:34928394-34928413 | None:intergenic | 35.0% |
| !!! | ACATATCCTGCTGGTTTTAT+GGG | - | chr7.3:34927856-34927875 | MS.gene071029:intron | 35.0% |
| !!! | CGGAAATTTTCATTGGTCTT+GGG | + | chr7.3:34928083-34928102 | None:intergenic | 35.0% |
| AAGCTTAAACTGCAACAGGT+TGG | + | chr7.3:34928285-34928304 | None:intergenic | 40.0% | |
| AAGGTACGATCTGTTCAGTT+TGG | - | chr7.3:34928308-34928327 | MS.gene071029:intron | 40.0% | |
| AATGTCTTCACCATTGGCAA+AGG | - | chr7.3:34928605-34928624 | MS.gene071029:intron | 40.0% | |
| AATGTTGTTATGGTGACTGG+AGG | - | chr7.3:34928470-34928489 | MS.gene071029:intron | 40.0% | |
| AGGTACGATCTGTTCAGTTT+GGG | - | chr7.3:34928309-34928328 | MS.gene071029:intron | 40.0% | |
| ATCTGGACCACACAAATCAA+GGG | - | chr7.3:34927711-34927730 | MS.gene071029:intron | 40.0% | |
| CAACTTGGACATCTTGTACA+AGG | - | chr7.3:34926292-34926311 | MS.gene071029:intron | 40.0% | |
| CAATTTGATACCTCTGCCTT+TGG | + | chr7.3:34928654-34928673 | None:intergenic | 40.0% | |
| CAGCAAGCTGTAAAAGTTTC+TGG | - | chr7.3:34926480-34926499 | MS.gene071029:intron | 40.0% | |
| CATTGGATGCTTGATAAGCT+TGG | - | chr7.3:34927565-34927584 | MS.gene071029:intron | 40.0% | |
| CCATCATAGGTGTTCAGATA+CGG | + | chr7.3:34928347-34928366 | None:intergenic | 40.0% | |
| CGTATCTGAACACCTATGAT+GGG | - | chr7.3:34928345-34928364 | MS.gene071029:intron | 40.0% | |
| CGTCTTCTCTATGACACTAA+AGG | - | chr7.3:34928101-34928120 | MS.gene071029:intron | 40.0% | |
| CTAAACGTAGACTGTGTACT+AGG | + | chr7.3:34925704-34925723 | None:intergenic | 40.0% | |
| CTAGTACACAGTCTACGTTT+AGG | - | chr7.3:34925702-34925721 | MS.gene071029:intron | 40.0% | |
| CTATCCTGATCCCCTTATTA+AGG | - | chr7.3:34928379-34928398 | MS.gene071029:intron | 40.0% | |
| CTGTGTACTAGGATTCTCTA+TGG | + | chr7.3:34925693-34925712 | None:intergenic | 40.0% | |
| CTTGTACAAGATGTCCAAGT+TGG | + | chr7.3:34926294-34926313 | None:intergenic | 40.0% | |
| CTTTGCCATCAACTAGAACA+TGG | + | chr7.3:34927822-34927841 | None:intergenic | 40.0% | |
| GGCATTAGACCTAAATTGCA+CGG | - | chr7.3:34927883-34927902 | MS.gene071029:intron | 40.0% | |
| GTTGCAGTTTAAGCTTTGCA+AGG | - | chr7.3:34928289-34928308 | MS.gene071029:intron | 40.0% | |
| TAATAAGGGGATCAGGATAG+CGG | + | chr7.3:34928379-34928398 | None:intergenic | 40.0% | |
| TGATGTGGGGAATGTTGTTA+TGG | - | chr7.3:34928460-34928479 | MS.gene071029:intron | 40.0% | |
| TGCAAAGCTTAAACTGCAAC+AGG | + | chr7.3:34928289-34928308 | None:intergenic | 40.0% | |
| TGCCTAAAATCTCAGTCCAT+TGG | - | chr7.3:34926726-34926745 | MS.gene071029:intron | 40.0% | |
| TGGTGAAGACATTACCCAAT+CGG | + | chr7.3:34928598-34928617 | None:intergenic | 40.0% | |
| TGTAAGGGATGATGAAGCAA+AGG | - | chr7.3:34928142-34928161 | MS.gene071029:intron | 40.0% | |
| TGTCTTAAGGTTTCAGGGTT+AGG | - | chr7.3:34926850-34926869 | MS.gene071029:intron | 40.0% | |
| TTGGGTAATGTCTTCACCAT+TGG | - | chr7.3:34928599-34928618 | MS.gene071029:intron | 40.0% | |
| ! | ATGCGGATGTCCAATTTTTC+AGG | + | chr7.3:34927109-34927128 | None:intergenic | 40.0% |
| !! | GTGTCATTGGCCTTAATAAG+GGG | + | chr7.3:34928392-34928411 | None:intergenic | 40.0% |
| !!! | AGCCAATGGACTGAGATTTT+AGG | + | chr7.3:34926731-34926750 | None:intergenic | 40.0% |
| !!! | GACATATCCTGCTGGTTTTA+TGG | - | chr7.3:34927855-34927874 | MS.gene071029:intron | 40.0% |
| !!! | TTTTGAGACCATTCATGTCC+AGG | - | chr7.3:34928547-34928566 | MS.gene071029:intron | 40.0% |
| ACAGACAAGACATATCCTGC+TGG | - | chr7.3:34927847-34927866 | MS.gene071029:intron | 45.0% | |
| AGGTTTCGAACCTTTGCCAA+TGG | + | chr7.3:34928618-34928637 | None:intergenic | 45.0% | |
| AGTAGCATCCTGGACATGAA+TGG | + | chr7.3:34928558-34928577 | None:intergenic | 45.0% | |
| ATTCATGTCCAGGATGCTAC+TGG | - | chr7.3:34928557-34928576 | MS.gene071029:intron | 45.0% | |
| ATTCCGTCTCCACTCTGTAA+GGG | - | chr7.3:34928127-34928146 | MS.gene071029:intron | 45.0% | |
| CAAATTGACCGTCATTGAGG+AGG | - | chr7.3:34928667-34928686 | MS.gene071029:intron | 45.0% | |
| CATCTGGACCACACAAATCA+AGG | - | chr7.3:34927710-34927729 | MS.gene071029:intron | 45.0% | |
| CATGAGTTTGCAACCCGATT+GGG | - | chr7.3:34928581-34928600 | MS.gene071029:intron | 45.0% | |
| CCGTATCTGAACACCTATGA+TGG | - | chr7.3:34928344-34928363 | MS.gene071029:intron | 45.0% | |
| CTGTTCAGTTTGGGCAGAAA+GGG | - | chr7.3:34928318-34928337 | MS.gene071029:intron | 45.0% | |
| CTTCATCATCCCTTACAGAG+TGG | + | chr7.3:34928139-34928158 | None:intergenic | 45.0% | |
| GATTTGTGTGGTCCAGATGA+CGG | + | chr7.3:34927709-34927728 | None:intergenic | 45.0% | |
| GGGAATGTTGTTATGGTGAC+TGG | - | chr7.3:34928467-34928486 | MS.gene071029:intron | 45.0% | |
| GGTGAAGACATTACCCAATC+GGG | + | chr7.3:34928597-34928616 | None:intergenic | 45.0% | |
| TCAAGATAAGGATCAACGGC+AGG | + | chr7.3:34927741-34927760 | None:intergenic | 45.0% | |
| TCATGAGTTTGCAACCCGAT+TGG | - | chr7.3:34928580-34928599 | MS.gene071029:intron | 45.0% | |
| TCTCGTGTATTTCAGGCAAG+AGG | - | chr7.3:34927505-34927524 | MS.gene071029:intron | 45.0% | |
| TCTGTTCAGTTTGGGCAGAA+AGG | - | chr7.3:34928317-34928336 | MS.gene071029:intron | 45.0% | |
| TGCCGTTGATCCTTATCTTG+AGG | - | chr7.3:34927740-34927759 | MS.gene071029:intron | 45.0% | |
| TGGATGCTTGATAAGCTTGG+TGG | - | chr7.3:34927568-34927587 | MS.gene071029:intron | 45.0% | |
| TGGCAAAGGTTCGAAACCTT+GGG | - | chr7.3:34928619-34928638 | MS.gene071029:intron | 45.0% | |
| TTGGCAAAGGTTCGAAACCT+TGG | - | chr7.3:34928618-34928637 | MS.gene071029:intron | 45.0% | |
| TTGTTATGGTGACTGGAGGA+AGG | - | chr7.3:34928474-34928493 | MS.gene071029:intron | 45.0% | |
| ! | AAACTGCAACAGGTTGGAGA+GGG | + | chr7.3:34928279-34928298 | None:intergenic | 45.0% |
| ! | ACGTTTAGGGTGCGTTTGTT+TGG | - | chr7.3:34925716-34925735 | MS.gene071029:intron | 45.0% |
| ! | CGTTTAGGGTGCGTTTGTTT+GGG | - | chr7.3:34925717-34925736 | MS.gene071029:intron | 45.0% |
| ! | TAAACTGCAACAGGTTGGAG+AGG | + | chr7.3:34928280-34928299 | None:intergenic | 45.0% |
| ! | TACAAGATGTCCAAGTTGGC+AGG | + | chr7.3:34926290-34926309 | None:intergenic | 45.0% |
| !! | TTGGCCTTAATAAGGGGATC+AGG | + | chr7.3:34928386-34928405 | None:intergenic | 45.0% |
| !!! | CCTGCTGGTTTTATGGGTAT+GGG | - | chr7.3:34927862-34927881 | MS.gene071029:intron | 45.0% |
| !!! | TCCTGCTGGTTTTATGGGTA+TGG | - | chr7.3:34927861-34927880 | MS.gene071029:intron | 45.0% |
| AACATGGCGCTGCATCAAGA+TGG | + | chr7.3:34927806-34927825 | None:intergenic | 50.0% | |
| ACTCATGACCAGTAGCATCC+TGG | + | chr7.3:34928568-34928587 | None:intergenic | 50.0% | |
| CATCCCTTACAGAGTGGAGA+CGG | + | chr7.3:34928133-34928152 | None:intergenic | 50.0% | |
| CCCATACCCATAAAACCAGC+AGG | + | chr7.3:34927865-34927884 | None:intergenic | 50.0% | |
| CTTCCTAGCCTCCTCAATGA+CGG | + | chr7.3:34928678-34928697 | None:intergenic | 50.0% | |
| GATTCCGTCTCCACTCTGTA+AGG | - | chr7.3:34928126-34928145 | MS.gene071029:intron | 50.0% | |
| GGCTCAATGCTCCAAAGCAT+TGG | - | chr7.3:34927548-34927567 | MS.gene071029:intron | 50.0% | |
| TCATTGAGGAGGCTAGGAAG+CGG | - | chr7.3:34928678-34928697 | MS.gene071029:intron | 50.0% | |
| ! | CAGCGCCATGTTCTAGTTGA+TGG | - | chr7.3:34927814-34927833 | MS.gene071029:intron | 50.0% |
| !! | AGCTTGGTGGTGCCTTTGTA+TGG | - | chr7.3:34927581-34927600 | MS.gene071029:intron | 50.0% |
| !! | AGGCACTCCCTTGATTTGTG+TGG | + | chr7.3:34927721-34927740 | None:intergenic | 50.0% |
| CCTTGGGTGTCTCTTCCCAA+AGG | - | chr7.3:34928635-34928654 | MS.gene071029:intron | 55.0% | |
| GATGGCTGCTTCTCAACAGG+TGG | - | chr7.3:34928700-34928719 | MS.gene071029:intron | 55.0% | |
| GGAAGGAACAGAGGTCGTGT+TGG | - | chr7.3:34928491-34928510 | MS.gene071029:intron | 55.0% | |
| GTGACTGGAGGAAGGAACAG+AGG | - | chr7.3:34928482-34928501 | MS.gene071029:intron | 55.0% | |
| GTGTCTCTTCCCAAAGGCAG+AGG | - | chr7.3:34928641-34928660 | MS.gene071029:intron | 55.0% | |
| TGACCGTCATTGAGGAGGCT+AGG | - | chr7.3:34928672-34928691 | MS.gene071029:intron | 55.0% | |
| ! | CCTTTGGGAAGAGACACCCA+AGG | + | chr7.3:34928638-34928657 | None:intergenic | 55.0% |
| ! | GCGGATTGTACGCCCATCAT+AGG | + | chr7.3:34928360-34928379 | None:intergenic | 55.0% |
| ! | GTGGTCCAGATGACGGCTTT+GGG | + | chr7.3:34927702-34927721 | None:intergenic | 55.0% |
| ! | TGCAACAGGTTGGAGAGGGA+GGG | + | chr7.3:34928275-34928294 | None:intergenic | 55.0% |
| ! | TGGTCCAGATGACGGCTTTG+GGG | + | chr7.3:34927701-34927720 | None:intergenic | 55.0% |
| ! | TGTGGTCCAGATGACGGCTT+TGG | + | chr7.3:34927703-34927722 | None:intergenic | 55.0% |
| GCGGATGGCTGCTTCTCAAC+AGG | - | chr7.3:34928697-34928716 | MS.gene071029:intron | 60.0% | |
| TGAGGAGGCTAGGAAGCGGA+TGG | - | chr7.3:34928682-34928701 | MS.gene071029:intron | 60.0% | |
| ! | CTGCAACAGGTTGGAGAGGG+AGG | + | chr7.3:34928276-34928295 | None:intergenic | 60.0% |
| CAGGCCCCAAAGCCGTCATC+TGG | - | chr7.3:34927694-34927713 | MS.gene071029:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 34925247 | 34928733 | 34925247 | ID=MS.gene071029 |
| chr7.3 | mRNA | 34925247 | 34928733 | 34925247 | ID=MS.gene071029.t1;Parent=MS.gene071029 |
| chr7.3 | exon | 34928731 | 34928733 | 34928731 | ID=MS.gene071029.t1.exon1;Parent=MS.gene071029.t1 |
| chr7.3 | CDS | 34928731 | 34928733 | 34928731 | ID=cds.MS.gene071029.t1;Parent=MS.gene071029.t1 |
| chr7.3 | exon | 34926383 | 34926460 | 34926383 | ID=MS.gene071029.t1.exon2;Parent=MS.gene071029.t1 |
| chr7.3 | CDS | 34926383 | 34926460 | 34926383 | ID=cds.MS.gene071029.t1;Parent=MS.gene071029.t1 |
| chr7.3 | exon | 34926103 | 34926283 | 34926103 | ID=MS.gene071029.t1.exon3;Parent=MS.gene071029.t1 |
| chr7.3 | CDS | 34926103 | 34926283 | 34926103 | ID=cds.MS.gene071029.t1;Parent=MS.gene071029.t1 |
| chr7.3 | exon | 34925817 | 34925914 | 34925817 | ID=MS.gene071029.t1.exon4;Parent=MS.gene071029.t1 |
| chr7.3 | CDS | 34925817 | 34925914 | 34925817 | ID=cds.MS.gene071029.t1;Parent=MS.gene071029.t1 |
| chr7.3 | exon | 34925247 | 34925684 | 34925247 | ID=MS.gene071029.t1.exon5;Parent=MS.gene071029.t1 |
| chr7.3 | CDS | 34925247 | 34925684 | 34925247 | ID=cds.MS.gene071029.t1;Parent=MS.gene071029.t1 |
| Gene Sequence |
| Protein sequence |
