Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032440.t1 | XP_003611879.1 | 100 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 9.60E-148 | 532.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032440.t1 | P49204 | 90.5 | 262 | 25 | 0 | 1 | 262 | 1 | 262 | 6.3e-140 | 498.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032440.t1 | B7FL29 | 100.0 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 6.9e-148 | 532.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene74487 | MS.gene032440 | PPI |
| MS.gene071029 | MS.gene032440 | PPI |
| MS.gene047717 | MS.gene032440 | PPI |
| MS.gene82426 | MS.gene032440 | PPI |
| MS.gene028153 | MS.gene032440 | PPI |
| MS.gene041181 | MS.gene032440 | PPI |
| MS.gene035447 | MS.gene032440 | PPI |
| MS.gene42236 | MS.gene032440 | PPI |
| MS.gene032440 | MS.gene073888 | PPI |
| MS.gene032440 | MS.gene053443 | PPI |
| MS.gene72768 | MS.gene032440 | PPI |
| MS.gene53517 | MS.gene032440 | PPI |
| MS.gene032440 | MS.gene83444 | PPI |
| MS.gene43012 | MS.gene032440 | PPI |
| MS.gene95672 | MS.gene032440 | PPI |
| MS.gene032440 | MS.gene52173 | PPI |
| MS.gene023799 | MS.gene032440 | PPI |
| MS.gene38870 | MS.gene032440 | PPI |
| MS.gene27648 | MS.gene032440 | PPI |
| MS.gene069005 | MS.gene032440 | PPI |
| MS.gene59369 | MS.gene032440 | PPI |
| MS.gene032440 | MS.gene010439 | PPI |
| MS.gene99501 | MS.gene032440 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032440.t1 | MTR_5g018940 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
| MS.gene032440.t1 | MTR_5g018940 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
| MS.gene032440.t1 | MTR_8g052030 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
| MS.gene032440.t1 | MTR_4g014590 | 95.094 | 265 | 12 | 1 | 1 | 265 | 1 | 264 | 0.0 | 518 |
| MS.gene032440.t1 | MTR_7g069950 | 94.510 | 255 | 14 | 0 | 1 | 255 | 1 | 255 | 0.0 | 501 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene032440.t1 | AT5G07090 | 90.458 | 262 | 25 | 0 | 1 | 262 | 1 | 262 | 0.0 | 506 |
| MS.gene032440.t1 | AT2G17360 | 90.769 | 260 | 24 | 0 | 1 | 260 | 1 | 260 | 0.0 | 504 |
| MS.gene032440.t1 | AT5G58420 | 90.076 | 262 | 26 | 0 | 1 | 262 | 1 | 262 | 0.0 | 503 |
| MS.gene032440.t1 | AT5G07090 | 89.754 | 244 | 25 | 0 | 19 | 262 | 1 | 244 | 2.41e-169 | 468 |
| MS.gene032440.t1 | AT5G07090 | 89.754 | 244 | 25 | 0 | 19 | 262 | 1 | 244 | 2.41e-169 | 468 |
| MS.gene032440.t1 | AT2G17360 | 91.160 | 181 | 16 | 0 | 1 | 181 | 1 | 181 | 2.61e-125 | 354 |
Find 86 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTGGATGCTTGACAAAT+TGG | 0.267158 | 8.3:+50909549 | MS.gene032440:CDS |
| TTAGTCAATGTGTTTACTAT+TGG | 0.296086 | 8.3:+50911687 | MS.gene032440:CDS |
| GGGAATGTCGTTATGGTTAC+TGG | 0.296804 | 8.3:+50911555 | MS.gene032440:CDS |
| TTCCTCTAGATCCAGCTTGA+TGG | 0.316056 | 8.3:-50911499 | None:intergenic |
| CGTCAGGACCACACAAATCT+AGG | 0.320235 | 8.3:+50909678 | MS.gene032440:CDS |
| TGTGGTCCTGACGAGGGTTT+TGG | 0.324202 | 8.3:-50909668 | None:intergenic |
| TTAGCCCTGATGACGGGGTC+TGG | 0.331490 | 8.3:-50911471 | None:intergenic |
| AGGTCCGTTCAGTGCAGTTT+GGG | 0.357131 | 8.3:+50911397 | MS.gene032440:CDS |
| GGTTACTGGTGGTAAGAATA+GGG | 0.371328 | 8.3:+50911569 | MS.gene032440:CDS |
| TGGTTACTGGTGGTAAGAAT+AGG | 0.371768 | 8.3:+50911568 | MS.gene032440:CDS |
| GTTACCCAGACCCCGTCATC+AGG | 0.378657 | 8.3:+50911466 | MS.gene032440:CDS |
| TTGTCAAGCATCCAATGCTT+GGG | 0.386706 | 8.3:-50909544 | None:intergenic |
| AAGGTCCGTTCAGTGCAGTT+TGG | 0.387427 | 8.3:+50911396 | MS.gene032440:CDS |
| ATTTCATCAAATTTGATGTT+GGG | 0.389801 | 8.3:+50911535 | MS.gene032440:CDS |
| GACTTATCCAGCTGGATTCA+TGG | 0.391447 | 8.3:+50909823 | MS.gene032440:CDS |
| GATTTCATCAAATTTGATGT+TGG | 0.427275 | 8.3:+50911534 | MS.gene032440:CDS |
| TGCGACCATCATAGGTGTTA+AGG | 0.437039 | 8.3:-50911437 | None:intergenic |
| TTTGTCAAGCATCCAATGCT+TGG | 0.437860 | 8.3:-50909545 | None:intergenic |
| CCATCATAGGTGTTAAGGTA+TGG | 0.437978 | 8.3:-50911432 | None:intergenic |
| ACGGATAGTGCGACCATCAT+AGG | 0.439814 | 8.3:-50911445 | None:intergenic |
| GTGGAGACGGAAGCGGCCTT+TGG | 0.446180 | 8.3:-50910931 | None:intergenic |
| TGATGTTGGGAATGTCGTTA+TGG | 0.448181 | 8.3:+50911548 | MS.gene032440:CDS |
| GTGTCGTTAGCCCTGATGAC+GGG | 0.455832 | 8.3:-50911477 | None:intergenic |
| CAAGAACAGAGAGAAGCATA+AGG | 0.455834 | 8.3:+50911608 | MS.gene032440:CDS |
| CATTGGATGCTTGACAAATT+GGG | 0.462746 | 8.3:+50909550 | MS.gene032440:CDS |
| TAGCCCTGATGACGGGGTCT+GGG | 0.473190 | 8.3:-50911470 | None:intergenic |
| TGAGAATAGCAATGACTTCA+CGG | 0.475445 | 8.3:-50909757 | None:intergenic |
| CAACGACATGTCCTTGTTGA+CGG | 0.478258 | 8.3:+50909782 | MS.gene032440:CDS |
| AGCTTAATACCCTTACCCTT+GGG | 0.483433 | 8.3:-50911738 | None:intergenic |
| TTACAGTCATTGAGGAAGCT+AGG | 0.485211 | 8.3:+50911760 | MS.gene032440:CDS |
| GGTATCTCTTCCCAAGGGTA+AGG | 0.487613 | 8.3:+50911728 | MS.gene032440:CDS |
| AAGCTTAATACCCTTACCCT+TGG | 0.502359 | 8.3:-50911739 | None:intergenic |
| TCCTTGTTGACGGTAAAGTC+AGG | 0.512114 | 8.3:+50909792 | MS.gene032440:CDS |
| TAGGCTCCAAAACCCTCGTC+AGG | 0.512287 | 8.3:+50909662 | MS.gene032440:intron |
| ACTTATCCAGCTGGATTCAT+GGG | 0.514100 | 8.3:+50909824 | MS.gene032440:CDS |
| CCATACCTTAACACCTATGA+TGG | 0.520450 | 8.3:+50911432 | MS.gene032440:CDS |
| GGCTAACGACACCATCAAGC+TGG | 0.526110 | 8.3:+50911488 | MS.gene032440:CDS |
| CATCATAGGTGTTAAGGTAT+GGG | 0.527232 | 8.3:-50911431 | None:intergenic |
| TTCATACCCATGAATCCAGC+TGG | 0.529071 | 8.3:-50909830 | None:intergenic |
| TGATGACGGGGTCTGGGTAA+CGG | 0.533614 | 8.3:-50911464 | None:intergenic |
| TTGGCAAGGGCACAAAGCCA+TGG | 0.537474 | 8.3:+50911706 | MS.gene032440:CDS |
| ATTCGAGACAATCCACGTTC+AGG | 0.539354 | 8.3:+50911635 | MS.gene032440:CDS |
| GGTAAGAATAGGGGACGTGT+TGG | 0.541026 | 8.3:+50911579 | MS.gene032440:CDS |
| AGTCAGAGACGACGAGGCTA+AGG | 0.542760 | 8.3:+50910956 | MS.gene032440:CDS |
| TCAGTGCAGTTTGGGCAGAA+AGG | 0.549135 | 8.3:+50911405 | MS.gene032440:CDS |
| AGATTTGTGTGGTCCTGACG+AGG | 0.555265 | 8.3:-50909675 | None:intergenic |
| TCATTGAGGAAGCTAGGAAG+AGG | 0.556083 | 8.3:+50911766 | MS.gene032440:CDS |
| CACCATCAAGCTGGATCTAG+AGG | 0.556190 | 8.3:+50911497 | MS.gene032440:CDS |
| CAATGTGTTTACTATTGGCA+AGG | 0.557502 | 8.3:+50911692 | MS.gene032440:CDS |
| AAGAACAGAGAGAAGCATAA+GGG | 0.558423 | 8.3:+50911609 | MS.gene032440:CDS |
| CGTCTCTGACTGAGTGGAGA+CGG | 0.558927 | 8.3:-50910944 | None:intergenic |
| TATTAAGCTTACAGTCATTG+AGG | 0.561603 | 8.3:+50911752 | MS.gene032440:CDS |
| TGTCAAGCATCCAATGCTTG+GGG | 0.568821 | 8.3:-50909543 | None:intergenic |
| AGCTAGGAAGAGGGCTGCTG+CGG | 0.574575 | 8.3:+50911776 | MS.gene032440:CDS |
| GCCATGGGTATCTCTTCCCA+AGG | 0.583131 | 8.3:+50911722 | MS.gene032440:CDS |
| TTTCGCAAAATCAGAATGAG+TGG | 0.587385 | 8.3:-50909710 | None:intergenic |
| GTCAGGACCACACAAATCTA+GGG | 0.588053 | 8.3:+50909679 | MS.gene032440:CDS |
| GATTGAAGAAGCATTTGAAG+AGG | 0.590583 | 8.3:+50909512 | MS.gene032440:CDS |
| GATTTGTGTGGTCCTGACGA+GGG | 0.594605 | 8.3:-50909674 | None:intergenic |
| GTATCTCTTCCCAAGGGTAA+GGG | 0.600286 | 8.3:+50911729 | MS.gene032440:CDS |
| TGGCAAGGGCACAAAGCCAT+GGG | 0.601941 | 8.3:+50911707 | MS.gene032440:CDS |
| GGTGTCGTTAGCCCTGATGA+CGG | 0.604149 | 8.3:-50911478 | None:intergenic |
| TCTGCCCAAACTGCACTGAA+CGG | 0.604733 | 8.3:-50911401 | None:intergenic |
| TCCTGACTTTACCGTCAACA+AGG | 0.605928 | 8.3:-50909793 | None:intergenic |
| AATGTGTTTACTATTGGCAA+GGG | 0.607729 | 8.3:+50911693 | MS.gene032440:CDS |
| ATCCACGTTCAGGATGCCAC+TGG | 0.616221 | 8.3:+50911645 | MS.gene032440:CDS |
| GACCAGTGGCATCCTGAACG+TGG | 0.616751 | 8.3:-50911647 | None:intergenic |
| ACTGACAAGACTTATCCAGC+TGG | 0.621794 | 8.3:+50909815 | MS.gene032440:CDS |
| CCTCGTCGTCTCTGACTGAG+TGG | 0.624746 | 8.3:-50910950 | None:intergenic |
| CTGTGAATGTAACAGGCTAG+AGG | 0.625011 | 8.3:+50909490 | MS.gene032440:intron |
| CTTTGGTATCATAAAGCAGA+CGG | 0.627128 | 8.3:-50910914 | None:intergenic |
| CATTGAGGAAGCTAGGAAGA+GGG | 0.631407 | 8.3:+50911767 | MS.gene032440:CDS |
| TGACTGAGTGGAGACGGAAG+CGG | 0.632899 | 8.3:-50910938 | None:intergenic |
| TGTCGTTAGCCCTGATGACG+GGG | 0.637880 | 8.3:-50911476 | None:intergenic |
| GTTACTGGTGGTAAGAATAG+GGG | 0.638404 | 8.3:+50911570 | MS.gene032440:CDS |
| CGTCTGCTTTATGATACCAA+AGG | 0.648327 | 8.3:+50910915 | MS.gene032440:CDS |
| GTCAAGCATCCAATGCTTGG+GGG | 0.650283 | 8.3:-50909542 | None:intergenic |
| TTACCCAGACCCCGTCATCA+GGG | 0.650709 | 8.3:+50911467 | MS.gene032440:CDS |
| ATGGCAGTTCAAGCTCTGCA+AGG | 0.650875 | 8.3:+50911377 | MS.gene032440:intron |
| CCCTTGGGAAGAGATACCCA+TGG | 0.652851 | 8.3:-50911723 | None:intergenic |
| AGACATTCCCTAGATTTGTG+TGG | 0.654592 | 8.3:-50909686 | None:intergenic |
| CCATGGGTATCTCTTCCCAA+GGG | 0.685421 | 8.3:+50911723 | MS.gene032440:CDS |
| TGGATGCTTGACAAATTGGG+TGG | 0.687057 | 8.3:+50909553 | MS.gene032440:CDS |
| CCACTCAGTCAGAGACGACG+AGG | 0.692022 | 8.3:+50910950 | MS.gene032440:CDS |
| AGTTGCGAACTCATGACCAG+TGG | 0.722639 | 8.3:-50911661 | None:intergenic |
| AATGTCGTTATGGTTACTGG+TGG | 0.727160 | 8.3:+50911558 | MS.gene032440:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTAGAAAAAAATAGATTT+TGG | + | chr8.3:50910592-50910611 | MS.gene032440:intron | 10.0% |
| !!! | TTGTTAAAAAAATCATTTTT+AGG | - | chr8.3:50910650-50910669 | None:intergenic | 10.0% |
| !!! | TTTAAAAAAAATAGATTTTG+AGG | + | chr8.3:50910448-50910467 | MS.gene032440:intron | 10.0% |
| !! | AATATTCAGTAATCAAATAA+AGG | - | chr8.3:50910984-50911003 | None:intergenic | 15.0% |
| !! | ACTTATGAATAATACATAAA+AGG | + | chr8.3:50910181-50910200 | MS.gene032440:intron | 15.0% |
| !! | TTACTATACATAAATCTTAT+TGG | - | chr8.3:50911141-50911160 | None:intergenic | 15.0% |
| !!! | ATCTTCAAAAAATGATTTTT+AGG | - | chr8.3:50910544-50910563 | None:intergenic | 15.0% |
| !!! | TCTATTTTTTTCTAAATACA+AGG | - | chr8.3:50910589-50910608 | None:intergenic | 15.0% |
| !! | AACAGTTTATGCAAATAAAT+TGG | + | chr8.3:50910076-50910095 | MS.gene032440:intron | 20.0% |
| !! | AATACAGAATATGATACAAA+GGG | - | chr8.3:50910776-50910795 | None:intergenic | 20.0% |
| !! | AGTTGTGTAATTAAAGAATT+TGG | + | chr8.3:50910409-50910428 | MS.gene032440:intron | 20.0% |
| !! | ATTTCATCAAATTTGATGTT+GGG | + | chr8.3:50911535-50911554 | MS.gene032440:CDS | 20.0% |
| !! | GTTGTGTAATTAAAGAATTT+GGG | + | chr8.3:50910410-50910429 | MS.gene032440:intron | 20.0% |
| !! | TCAAAAAAATCCAAAACAAA+CGG | + | chr8.3:50910749-50910768 | MS.gene032440:intron | 20.0% |
| ! | AAAATATGCATAATCCAAAC+GGG | + | chr8.3:50910238-50910257 | MS.gene032440:intron | 25.0% |
| ! | ATGAAAATGGCAAGAATAAA+CGG | - | chr8.3:50911265-50911284 | None:intergenic | 25.0% |
| ! | CAAAATAAGCCTAATAAAGA+CGG | - | chr8.3:50910045-50910064 | None:intergenic | 25.0% |
| ! | CAAAATATGCATAATCCAAA+CGG | + | chr8.3:50910237-50910256 | MS.gene032440:intron | 25.0% |
| ! | CAGATATATCAAACACAATA+AGG | - | chr8.3:50909473-50909492 | None:intergenic | 25.0% |
| ! | CTCCAATTCATATAATAACA+TGG | - | chr8.3:50911290-50911309 | None:intergenic | 25.0% |
| ! | GAATACAGAATATGATACAA+AGG | - | chr8.3:50910777-50910796 | None:intergenic | 25.0% |
| ! | GATTTCATCAAATTTGATGT+TGG | + | chr8.3:50911534-50911553 | MS.gene032440:CDS | 25.0% |
| ! | GTCCATGTTATTATATGAAT+TGG | + | chr8.3:50911285-50911304 | MS.gene032440:intron | 25.0% |
| ! | TAATAACATGGACATGAAAA+TGG | - | chr8.3:50911278-50911297 | None:intergenic | 25.0% |
| ! | TTAGTCAATGTGTTTACTAT+TGG | + | chr8.3:50911687-50911706 | MS.gene032440:CDS | 25.0% |
| ! | TTATATAAGTAGATCCAAAC+AGG | + | chr8.3:50909446-50909465 | MS.gene032440:intron | 25.0% |
| ! | TTGTATCATATTCTGTATTC+TGG | + | chr8.3:50910777-50910796 | MS.gene032440:intron | 25.0% |
| ! | TTGTCTTCAGATAAAATCAT+GGG | - | chr8.3:50910279-50910298 | None:intergenic | 25.0% |
| ! | TTTGTCTTCAGATAAAATCA+TGG | - | chr8.3:50910280-50910299 | None:intergenic | 25.0% |
| !! | AACTTTTGATGTATTATAGC+TGG | + | chr8.3:50909977-50909996 | MS.gene032440:intron | 25.0% |
| !! | ACTTTTGATGTATTATAGCT+GGG | + | chr8.3:50909978-50909997 | MS.gene032440:intron | 25.0% |
| !! | ATTTTATCTGAAGACAAAAC+AGG | + | chr8.3:50910282-50910301 | MS.gene032440:intron | 25.0% |
| !! | GATTGATGTGATTTTTGTAT+AGG | + | chr8.3:50909643-50909662 | MS.gene032440:intron | 25.0% |
| !! | TTTTCAATCTCATTTCGTAA+TGG | + | chr8.3:50909279-50909298 | MS.gene032440:intron | 25.0% |
| !!! | ATATTTGTATAGAGTGTTGA+AGG | + | chr8.3:50910018-50910037 | MS.gene032440:intron | 25.0% |
| !!! | TATTTGTATAGAGTGTTGAA+GGG | + | chr8.3:50910019-50910038 | MS.gene032440:intron | 25.0% |
| AATCATGGGATTCCATTATT+CGG | - | chr8.3:50910265-50910284 | None:intergenic | 30.0% | |
| AATGTGTTTACTATTGGCAA+GGG | + | chr8.3:50911693-50911712 | MS.gene032440:CDS | 30.0% | |
| CTGCTTAAGATAAAATTCAG+TGG | - | chr8.3:50909340-50909359 | None:intergenic | 30.0% | |
| GATATATCTGTGAATGTAAC+AGG | + | chr8.3:50909483-50909502 | MS.gene032440:intron | 30.0% | |
| TATTAAGCTTACAGTCATTG+AGG | + | chr8.3:50911752-50911771 | MS.gene032440:CDS | 30.0% | |
| TTCCTTGTATATGATGTACA+TGG | + | chr8.3:50911358-50911377 | MS.gene032440:intron | 30.0% | |
| ! | TTTGCAATGTTTTTCATGTC+TGG | + | chr8.3:50910359-50910378 | MS.gene032440:intron | 30.0% |
| AAACACAATAAGGACCTGTT+TGG | - | chr8.3:50909463-50909482 | None:intergenic | 35.0% | |
| AACATTCATGACATGAAGCA+CGG | - | chr8.3:50911185-50911204 | None:intergenic | 35.0% | |
| CAATGTGTTTACTATTGGCA+AGG | + | chr8.3:50911692-50911711 | MS.gene032440:CDS | 35.0% | |
| CATCATAGGTGTTAAGGTAT+GGG | - | chr8.3:50911434-50911453 | None:intergenic | 35.0% | |
| CATTGGATGCTTGACAAATT+GGG | + | chr8.3:50909550-50909569 | MS.gene032440:CDS | 35.0% | |
| CTTTGGTATCATAAAGCAGA+CGG | - | chr8.3:50910917-50910936 | None:intergenic | 35.0% | |
| GTTCTCTGACTCATTTGATT+TGG | + | chr8.3:50910807-50910826 | MS.gene032440:intron | 35.0% | |
| TGAGAATAGCAATGACTTCA+CGG | - | chr8.3:50909760-50909779 | None:intergenic | 35.0% | |
| TGCCATGTACATCATATACA+AGG | - | chr8.3:50911363-50911382 | None:intergenic | 35.0% | |
| TTCATGATTGCTATGAAGCA+CGG | + | chr8.3:50911073-50911092 | MS.gene032440:intron | 35.0% | |
| TTTCGCAAAATCAGAATGAG+TGG | - | chr8.3:50909713-50909732 | None:intergenic | 35.0% | |
| ! | AAGAACAGAGAGAAGCATAA+GGG | + | chr8.3:50911609-50911628 | MS.gene032440:CDS | 35.0% |
| ! | AGCTGGGTATTGTAAGTAAA+AGG | + | chr8.3:50909994-50910013 | MS.gene032440:intron | 35.0% |
| !! | GATTGAAGAAGCATTTGAAG+AGG | + | chr8.3:50909512-50909531 | MS.gene032440:CDS | 35.0% |
| !!! | GGAAGCTCTCATTTGTTTTA+GGG | - | chr8.3:50910896-50910915 | None:intergenic | 35.0% |
| AAGCTTAATACCCTTACCCT+TGG | - | chr8.3:50911742-50911761 | None:intergenic | 40.0% | |
| AATGTCGTTATGGTTACTGG+TGG | + | chr8.3:50911558-50911577 | MS.gene032440:CDS | 40.0% | |
| ACTTATCCAGCTGGATTCAT+GGG | + | chr8.3:50909824-50909843 | MS.gene032440:CDS | 40.0% | |
| AGACATTCCCTAGATTTGTG+TGG | - | chr8.3:50909689-50909708 | None:intergenic | 40.0% | |
| AGCTTAATACCCTTACCCTT+GGG | - | chr8.3:50911741-50911760 | None:intergenic | 40.0% | |
| ATGAAGCACGGATACTGTTA+TGG | + | chr8.3:50911085-50911104 | MS.gene032440:intron | 40.0% | |
| CCATACCTTAACACCTATGA+TGG | + | chr8.3:50911432-50911451 | MS.gene032440:CDS | 40.0% | |
| CCATCATAGGTGTTAAGGTA+TGG | - | chr8.3:50911435-50911454 | None:intergenic | 40.0% | |
| CGTCTGCTTTATGATACCAA+AGG | + | chr8.3:50910915-50910934 | MS.gene032440:CDS | 40.0% | |
| GCATTGGATGCTTGACAAAT+TGG | + | chr8.3:50909549-50909568 | MS.gene032440:CDS | 40.0% | |
| GGTTACTGGTGGTAAGAATA+GGG | + | chr8.3:50911569-50911588 | MS.gene032440:CDS | 40.0% | |
| GTTACTGGTGGTAAGAATAG+GGG | + | chr8.3:50911570-50911589 | MS.gene032440:CDS | 40.0% | |
| TGATGTTGGGAATGTCGTTA+TGG | + | chr8.3:50911548-50911567 | MS.gene032440:CDS | 40.0% | |
| TGGTTACTGGTGGTAAGAAT+AGG | + | chr8.3:50911568-50911587 | MS.gene032440:CDS | 40.0% | |
| TTACAGTCATTGAGGAAGCT+AGG | + | chr8.3:50911760-50911779 | MS.gene032440:CDS | 40.0% | |
| TTGTCAAGCATCCAATGCTT+GGG | - | chr8.3:50909547-50909566 | None:intergenic | 40.0% | |
| TTTGTCAAGCATCCAATGCT+TGG | - | chr8.3:50909548-50909567 | None:intergenic | 40.0% | |
| ! | CAAGAACAGAGAGAAGCATA+AGG | + | chr8.3:50911608-50911627 | MS.gene032440:CDS | 40.0% |
| ! | TACAAAGGGTCCGTTTGTTT+TGG | - | chr8.3:50910762-50910781 | None:intergenic | 40.0% |
| !! | CGGAAGCTCTCATTTGTTTT+AGG | - | chr8.3:50910897-50910916 | None:intergenic | 40.0% |
| !! | TGACTCATTTGATTTGGCTG+TGG | + | chr8.3:50910813-50910832 | MS.gene032440:intron | 40.0% |
| ACTGACAAGACTTATCCAGC+TGG | + | chr8.3:50909815-50909834 | MS.gene032440:CDS | 45.0% | |
| ATCCAAACGGGTCCGAATAA+TGG | + | chr8.3:50910250-50910269 | MS.gene032440:intron | 45.0% | |
| ATTCGAGACAATCCACGTTC+AGG | + | chr8.3:50911635-50911654 | MS.gene032440:CDS | 45.0% | |
| CAACGACATGTCCTTGTTGA+CGG | + | chr8.3:50909782-50909801 | MS.gene032440:CDS | 45.0% | |
| CATGAAGCACGGACACTAAT+CGG | - | chr8.3:50911174-50911193 | None:intergenic | 45.0% | |
| CATTGAGGAAGCTAGGAAGA+GGG | + | chr8.3:50911767-50911786 | MS.gene032440:CDS | 45.0% | |
| CTGTGAATGTAACAGGCTAG+AGG | + | chr8.3:50909490-50909509 | MS.gene032440:intron | 45.0% | |
| GACTTATCCAGCTGGATTCA+TGG | + | chr8.3:50909823-50909842 | MS.gene032440:CDS | 45.0% | |
| GGGAATGTCGTTATGGTTAC+TGG | + | chr8.3:50911555-50911574 | MS.gene032440:CDS | 45.0% | |
| GTATCTCTTCCCAAGGGTAA+GGG | + | chr8.3:50911729-50911748 | MS.gene032440:CDS | 45.0% | |
| GTCAGGACCACACAAATCTA+GGG | + | chr8.3:50909679-50909698 | MS.gene032440:CDS | 45.0% | |
| GTTGAAGGGCCGTCTTTATT+AGG | + | chr8.3:50910033-50910052 | MS.gene032440:intron | 45.0% | |
| TCATTGAGGAAGCTAGGAAG+AGG | + | chr8.3:50911766-50911785 | MS.gene032440:CDS | 45.0% | |
| TCCTGACTTTACCGTCAACA+AGG | - | chr8.3:50909796-50909815 | None:intergenic | 45.0% | |
| TCCTTGTTGACGGTAAAGTC+AGG | + | chr8.3:50909792-50909811 | MS.gene032440:CDS | 45.0% | |
| TGCGACCATCATAGGTGTTA+AGG | - | chr8.3:50911440-50911459 | None:intergenic | 45.0% | |
| TGGATGCTTGACAAATTGGG+TGG | + | chr8.3:50909553-50909572 | MS.gene032440:CDS | 45.0% | |
| TGTCAAGCATCCAATGCTTG+GGG | - | chr8.3:50909546-50909565 | None:intergenic | 45.0% | |
| TTCATACCCATGAATCCAGC+TGG | - | chr8.3:50909833-50909852 | None:intergenic | 45.0% | |
| TTCCATTATTCGGACCCGTT+TGG | - | chr8.3:50910255-50910274 | None:intergenic | 45.0% | |
| TTCCTCTAGATCCAGCTTGA+TGG | - | chr8.3:50911502-50911521 | None:intergenic | 45.0% | |
| AAGGTCCGTTCAGTGCAGTT+TGG | + | chr8.3:50911396-50911415 | MS.gene032440:CDS | 50.0% | |
| ACGGATAGTGCGACCATCAT+AGG | - | chr8.3:50911448-50911467 | None:intergenic | 50.0% | |
| AGATTTGTGTGGTCCTGACG+AGG | - | chr8.3:50909678-50909697 | None:intergenic | 50.0% | |
| AGGTCCGTTCAGTGCAGTTT+GGG | + | chr8.3:50911397-50911416 | MS.gene032440:CDS | 50.0% | |
| AGTTGCGAACTCATGACCAG+TGG | - | chr8.3:50911664-50911683 | None:intergenic | 50.0% | |
| ATGGCAGTTCAAGCTCTGCA+AGG | + | chr8.3:50911377-50911396 | MS.gene032440:intron | 50.0% | |
| CACCATCAAGCTGGATCTAG+AGG | + | chr8.3:50911497-50911516 | MS.gene032440:CDS | 50.0% | |
| CCATGGGTATCTCTTCCCAA+GGG | + | chr8.3:50911723-50911742 | MS.gene032440:CDS | 50.0% | |
| CGTCAGGACCACACAAATCT+AGG | + | chr8.3:50909678-50909697 | MS.gene032440:CDS | 50.0% | |
| GATTTGTGTGGTCCTGACGA+GGG | - | chr8.3:50909677-50909696 | None:intergenic | 50.0% | |
| GGTAAGAATAGGGGACGTGT+TGG | + | chr8.3:50911579-50911598 | MS.gene032440:CDS | 50.0% | |
| GGTATCTCTTCCCAAGGGTA+AGG | + | chr8.3:50911728-50911747 | MS.gene032440:CDS | 50.0% | |
| GTCAAGCATCCAATGCTTGG+GGG | - | chr8.3:50909545-50909564 | None:intergenic | 50.0% | |
| TCAGTGCAGTTTGGGCAGAA+AGG | + | chr8.3:50911405-50911424 | MS.gene032440:CDS | 50.0% | |
| TCTGCCCAAACTGCACTGAA+CGG | - | chr8.3:50911404-50911423 | None:intergenic | 50.0% | |
| ! | GCACGGACACTAATCGGTTT+AGG | - | chr8.3:50911168-50911187 | None:intergenic | 50.0% |
| AGTCAGAGACGACGAGGCTA+AGG | + | chr8.3:50910956-50910975 | MS.gene032440:CDS | 55.0% | |
| ATCCACGTTCAGGATGCCAC+TGG | + | chr8.3:50911645-50911664 | MS.gene032440:CDS | 55.0% | |
| CCCTTGGGAAGAGATACCCA+TGG | - | chr8.3:50911726-50911745 | None:intergenic | 55.0% | |
| CGTCTCTGACTGAGTGGAGA+CGG | - | chr8.3:50910947-50910966 | None:intergenic | 55.0% | |
| GCCATGGGTATCTCTTCCCA+AGG | + | chr8.3:50911722-50911741 | MS.gene032440:CDS | 55.0% | |
| GGCTAACGACACCATCAAGC+TGG | + | chr8.3:50911488-50911507 | MS.gene032440:CDS | 55.0% | |
| TAGGCTCCAAAACCCTCGTC+AGG | + | chr8.3:50909662-50909681 | MS.gene032440:intron | 55.0% | |
| TGACTGAGTGGAGACGGAAG+CGG | - | chr8.3:50910941-50910960 | None:intergenic | 55.0% | |
| TTACCCAGACCCCGTCATCA+GGG | + | chr8.3:50911467-50911486 | MS.gene032440:CDS | 55.0% | |
| ! | GTGTCGTTAGCCCTGATGAC+GGG | - | chr8.3:50911480-50911499 | None:intergenic | 55.0% |
| ! | TGGCAAGGGCACAAAGCCAT+GGG | + | chr8.3:50911707-50911726 | MS.gene032440:CDS | 55.0% |
| ! | TGTCGTTAGCCCTGATGACG+GGG | - | chr8.3:50911479-50911498 | None:intergenic | 55.0% |
| ! | TGTGGTCCTGACGAGGGTTT+TGG | - | chr8.3:50909671-50909690 | None:intergenic | 55.0% |
| ! | TTGGCAAGGGCACAAAGCCA+TGG | + | chr8.3:50911706-50911725 | MS.gene032440:CDS | 55.0% |
| !! | GGTGTCGTTAGCCCTGATGA+CGG | - | chr8.3:50911481-50911500 | None:intergenic | 55.0% |
| !! | TGATGACGGGGTCTGGGTAA+CGG | - | chr8.3:50911467-50911486 | None:intergenic | 55.0% |
| AGCTAGGAAGAGGGCTGCTG+CGG | + | chr8.3:50911776-50911795 | MS.gene032440:CDS | 60.0% | |
| CCACTCAGTCAGAGACGACG+AGG | + | chr8.3:50910950-50910969 | MS.gene032440:CDS | 60.0% | |
| CCTCGTCGTCTCTGACTGAG+TGG | - | chr8.3:50910953-50910972 | None:intergenic | 60.0% | |
| GACCAGTGGCATCCTGAACG+TGG | - | chr8.3:50911650-50911669 | None:intergenic | 60.0% | |
| GGCTCAATGCCCCCAAGCAT+TGG | + | chr8.3:50909533-50909552 | MS.gene032440:CDS | 60.0% | |
| GTTACCCAGACCCCGTCATC+AGG | + | chr8.3:50911466-50911485 | MS.gene032440:CDS | 60.0% | |
| !! | TAGCCCTGATGACGGGGTCT+GGG | - | chr8.3:50911473-50911492 | None:intergenic | 60.0% |
| !! | TTAGCCCTGATGACGGGGTC+TGG | - | chr8.3:50911474-50911493 | None:intergenic | 60.0% |
| GTGGAGACGGAAGCGGCCTT+TGG | - | chr8.3:50910934-50910953 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 50909232 | 50911821 | 50909232 | ID=MS.gene032440 |
| chr8.3 | mRNA | 50909232 | 50911821 | 50909232 | ID=MS.gene032440.t1;Parent=MS.gene032440 |
| chr8.3 | exon | 50909232 | 50909234 | 50909232 | ID=MS.gene032440.t1.exon1;Parent=MS.gene032440.t1 |
| chr8.3 | CDS | 50909232 | 50909234 | 50909232 | ID=cds.MS.gene032440.t1;Parent=MS.gene032440.t1 |
| chr8.3 | exon | 50909505 | 50909582 | 50909505 | ID=MS.gene032440.t1.exon2;Parent=MS.gene032440.t1 |
| chr8.3 | CDS | 50909505 | 50909582 | 50909505 | ID=cds.MS.gene032440.t1;Parent=MS.gene032440.t1 |
| chr8.3 | exon | 50909665 | 50909845 | 50909665 | ID=MS.gene032440.t1.exon3;Parent=MS.gene032440.t1 |
| chr8.3 | CDS | 50909665 | 50909845 | 50909665 | ID=cds.MS.gene032440.t1;Parent=MS.gene032440.t1 |
| chr8.3 | exon | 50910880 | 50910977 | 50910880 | ID=MS.gene032440.t1.exon4;Parent=MS.gene032440.t1 |
| chr8.3 | CDS | 50910880 | 50910977 | 50910880 | ID=cds.MS.gene032440.t1;Parent=MS.gene032440.t1 |
| chr8.3 | exon | 50911384 | 50911821 | 50911384 | ID=MS.gene032440.t1.exon5;Parent=MS.gene032440.t1 |
| chr8.3 | CDS | 50911384 | 50911821 | 50911384 | ID=cds.MS.gene032440.t1;Parent=MS.gene032440.t1 |
| Gene Sequence |
| Protein sequence |
