Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38870.t1 | XP_003611879.1 | 99.2 | 265 | 1 | 1 | 1 | 264 | 1 | 265 | 1.20E-145 | 525.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38870.t1 | Q93VH9 | 90.4 | 261 | 25 | 0 | 1 | 261 | 1 | 261 | 6.3e-140 | 498.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38870.t1 | B7FL29 | 99.2 | 265 | 1 | 1 | 1 | 264 | 1 | 265 | 8.4e-146 | 525.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene071029 | MS.gene38870 | PPI |
| MS.gene38870 | MS.gene99501 | PPI |
| MS.gene047717 | MS.gene38870 | PPI |
| MS.gene82426 | MS.gene38870 | PPI |
| MS.gene028153 | MS.gene38870 | PPI |
| MS.gene041181 | MS.gene38870 | PPI |
| MS.gene035447 | MS.gene38870 | PPI |
| MS.gene42236 | MS.gene38870 | PPI |
| MS.gene38870 | MS.gene010439 | PPI |
| MS.gene53517 | MS.gene38870 | PPI |
| MS.gene38870 | MS.gene035447 | PPI |
| MS.gene43012 | MS.gene38870 | PPI |
| MS.gene95672 | MS.gene38870 | PPI |
| MS.gene023799 | MS.gene38870 | PPI |
| MS.gene27648 | MS.gene38870 | PPI |
| MS.gene38870 | MS.gene83444 | PPI |
| MS.gene069005 | MS.gene38870 | PPI |
| MS.gene38870 | MS.gene071029 | PPI |
| MS.gene38870 | MS.gene032440 | PPI |
| MS.gene59369 | MS.gene38870 | PPI |
| MS.gene38870 | MS.gene073888 | PPI |
| MS.gene38870 | MS.gene053443 | PPI |
| MS.gene38870 | MS.gene52173 | PPI |
| MS.gene38870 | MS.gene72768 | PPI |
| MS.gene74487 | MS.gene38870 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38870.t1 | MTR_5g018940 | 99.245 | 265 | 1 | 1 | 1 | 264 | 1 | 265 | 0.0 | 537 |
| MS.gene38870.t1 | MTR_5g018940 | 99.245 | 265 | 1 | 1 | 1 | 264 | 1 | 265 | 0.0 | 537 |
| MS.gene38870.t1 | MTR_8g052030 | 99.245 | 265 | 1 | 1 | 1 | 264 | 1 | 265 | 0.0 | 537 |
| MS.gene38870.t1 | MTR_4g014590 | 94.697 | 264 | 14 | 0 | 1 | 264 | 1 | 264 | 0.0 | 519 |
| MS.gene38870.t1 | MTR_7g069950 | 94.118 | 255 | 15 | 0 | 1 | 255 | 1 | 255 | 0.0 | 500 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene38870.t1 | AT5G07090 | 90.421 | 261 | 25 | 0 | 1 | 261 | 1 | 261 | 0.0 | 506 |
| MS.gene38870.t1 | AT2G17360 | 90.421 | 261 | 25 | 0 | 1 | 261 | 1 | 261 | 0.0 | 506 |
| MS.gene38870.t1 | AT5G58420 | 90.038 | 261 | 26 | 0 | 1 | 261 | 1 | 261 | 0.0 | 503 |
| MS.gene38870.t1 | AT5G07090 | 89.712 | 243 | 25 | 0 | 19 | 261 | 1 | 243 | 2.50e-169 | 468 |
| MS.gene38870.t1 | AT5G07090 | 89.712 | 243 | 25 | 0 | 19 | 261 | 1 | 243 | 2.50e-169 | 468 |
| MS.gene38870.t1 | AT2G17360 | 90.608 | 181 | 17 | 0 | 1 | 181 | 1 | 181 | 3.77e-125 | 353 |
Find 87 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTGGATGCTTGACAAAT+TGG | 0.267158 | 8.4:+51612105 | MS.gene38870:CDS |
| TGTGGTCCTGACGAGGGTTT+TGG | 0.301896 | 8.4:-51612223 | None:intergenic |
| TTCCTCCAAATCCAGCTTGA+TGG | 0.336166 | 8.4:-51613740 | None:intergenic |
| TGACACCATCAAGCTGGATT+TGG | 0.339383 | 8.4:+51613735 | MS.gene38870:CDS |
| GGATACCTTTCTGCCCGAAT+TGG | 0.346865 | 8.4:-51613651 | None:intergenic |
| GGGAACGTCGTTATGGTTAC+TGG | 0.369601 | 8.4:+51613796 | MS.gene38870:CDS |
| GGTTACTGGTGGTAAGAATA+GGG | 0.371328 | 8.4:+51613810 | MS.gene38870:CDS |
| TGGTTACTGGTGGTAAGAAT+AGG | 0.371768 | 8.4:+51613809 | MS.gene38870:CDS |
| TTAGCCCTGATGACTGGGTC+TGG | 0.373613 | 8.4:-51613712 | None:intergenic |
| TTGGTCAATGTGTTTACTAT+TGG | 0.375435 | 8.4:+51613928 | MS.gene38870:CDS |
| GTGTCATTAGCCCTGATGAC+TGG | 0.375777 | 8.4:-51613718 | None:intergenic |
| TTGTCAAGCATCCAATGCTT+GGG | 0.386706 | 8.4:-51612100 | None:intergenic |
| GACTTATCCAGCTGGATTCA+TGG | 0.391447 | 8.4:+51612378 | MS.gene38870:CDS |
| GCTACCCAGACCCAGTCATC+AGG | 0.397697 | 8.4:+51613707 | MS.gene38870:CDS |
| CAACGACATGTCCTTGTTGA+TGG | 0.401577 | 8.4:+51612337 | MS.gene38870:CDS |
| AGGTACGTTCAGTCCAATTC+GGG | 0.402707 | 8.4:+51613638 | MS.gene38870:CDS |
| TGATGTTGGGAACGTCGTTA+TGG | 0.422263 | 8.4:+51613789 | MS.gene38870:CDS |
| AAGGTACGTTCAGTCCAATT+CGG | 0.430120 | 8.4:+51613637 | MS.gene38870:CDS |
| ATTTCATCAAGTTTGATGTT+GGG | 0.431033 | 8.4:+51613776 | MS.gene38870:CDS |
| CCATCATAGGTGTTAAGGTA+TGG | 0.433305 | 8.4:-51613673 | None:intergenic |
| GTGGAGACGGAAGCGGCCTT+TGG | 0.434188 | 8.4:-51613136 | None:intergenic |
| GATTTCATCAAGTTTGATGT+TGG | 0.434771 | 8.4:+51613775 | MS.gene38870:CDS |
| TTTGTCAAGCATCCAATGCT+TGG | 0.437860 | 8.4:-51612101 | None:intergenic |
| TACGACCATCATAGGTGTTA+AGG | 0.445352 | 8.4:-51613678 | None:intergenic |
| CGTCAGGACCACACAAGTCT+AGG | 0.447496 | 8.4:+51612233 | MS.gene38870:CDS |
| GCGGACTGTACGACCATCAT+AGG | 0.449192 | 8.4:-51613686 | None:intergenic |
| CATTGGATGCTTGACAAATT+GGG | 0.462746 | 8.4:+51612106 | MS.gene38870:CDS |
| CAAGAACAGAGAAAAGCATA+AGG | 0.471422 | 8.4:+51613849 | MS.gene38870:CDS |
| TGAGAATAGCAATGACTTCA+CGG | 0.475445 | 8.4:-51612312 | None:intergenic |
| CACCATCAAGCTGGATTTGG+AGG | 0.476869 | 8.4:+51613738 | MS.gene38870:CDS |
| TGATGACTGGGTCTGGGTAG+CGG | 0.477438 | 8.4:-51613705 | None:intergenic |
| TAGCCCTGATGACTGGGTCT+GGG | 0.482518 | 8.4:-51613711 | None:intergenic |
| AGCTTAATACCCTTACCCTT+GGG | 0.483433 | 8.4:-51613979 | None:intergenic |
| GGTATCTCTTCCCAAGGGTA+AGG | 0.487613 | 8.4:+51613969 | MS.gene38870:CDS |
| TTACAGTCATCGAGGAAGCT+AGG | 0.496234 | 8.4:+51614001 | MS.gene38870:CDS |
| AAGCTTAATACCCTTACCCT+TGG | 0.502359 | 8.4:-51613980 | None:intergenic |
| GGCTAATGACACCATCAAGC+TGG | 0.509237 | 8.4:+51613729 | MS.gene38870:CDS |
| TAGGCTCCAAAACCCTCGTC+AGG | 0.512287 | 8.4:+51612217 | MS.gene38870:intron |
| ACTTATCCAGCTGGATTCAT+GGG | 0.514100 | 8.4:+51612379 | MS.gene38870:CDS |
| CCATACCTTAACACCTATGA+TGG | 0.520450 | 8.4:+51613673 | MS.gene38870:CDS |
| CATCATAGGTGTTAAGGTAT+GGG | 0.527232 | 8.4:-51613672 | None:intergenic |
| TGTCATTAGCCCTGATGACT+GGG | 0.528886 | 8.4:-51613717 | None:intergenic |
| TTCATACCCATGAATCCAGC+TGG | 0.529071 | 8.4:-51612385 | None:intergenic |
| TCCTTGTTGATGGAAAAGTT+AGG | 0.529782 | 8.4:+51612347 | MS.gene38870:CDS |
| CAATGTGTTTACTATTGGCA+AGG | 0.534517 | 8.4:+51613933 | MS.gene38870:CDS |
| TTGGCAAGGGCACAAAGCCA+TGG | 0.537474 | 8.4:+51613947 | MS.gene38870:CDS |
| CATCTCTGACTGAGTGGAGA+CGG | 0.537807 | 8.4:-51613149 | None:intergenic |
| ATTCGAGACAATCCACGTTC+AGG | 0.539354 | 8.4:+51613876 | MS.gene38870:CDS |
| GGTAAGAATAGGGGACGTGT+TGG | 0.541026 | 8.4:+51613820 | MS.gene38870:CDS |
| TCATCGAGGAAGCTAGGAAG+AGG | 0.541078 | 8.4:+51614007 | MS.gene38870:CDS |
| TCATGAGTTTGCAACTCGGT+TGG | 0.546330 | 8.4:+51613909 | MS.gene38870:CDS |
| GTCAGGACCACACAAGTCTA+GGG | 0.565209 | 8.4:+51612234 | MS.gene38870:CDS |
| TGTCAAGCATCCAATGCTTG+GGG | 0.568821 | 8.4:-51612099 | None:intergenic |
| TCAGTCCAATTCGGGCAGAA+AGG | 0.569501 | 8.4:+51613646 | MS.gene38870:CDS |
| AGACTTGTGTGGTCCTGACG+AGG | 0.576031 | 8.4:-51612230 | None:intergenic |
| GCCATGGGTATCTCTTCCCA+AGG | 0.583131 | 8.4:+51613963 | MS.gene38870:CDS |
| CCGGTCATGAGTTTGCAACT+CGG | 0.585600 | 8.4:+51613905 | MS.gene38870:CDS |
| TTTCGCAAAATCAGAATGAG+TGG | 0.587385 | 8.4:-51612265 | None:intergenic |
| GATTGAAGAAGCATTTGAAG+AGG | 0.590583 | 8.4:+51612068 | MS.gene38870:CDS |
| GACTTGTGTGGTCCTGACGA+GGG | 0.595226 | 8.4:-51612229 | None:intergenic |
| AAGAACAGAGAAAAGCATAA+GGG | 0.598361 | 8.4:+51613850 | MS.gene38870:CDS |
| GTATCTCTTCCCAAGGGTAA+GGG | 0.600286 | 8.4:+51613970 | MS.gene38870:CDS |
| TGGCAAGGGCACAAAGCCAT+GGG | 0.601941 | 8.4:+51613948 | MS.gene38870:CDS |
| CCGAGTTGCAAACTCATGAC+CGG | 0.605451 | 8.4:-51613905 | None:intergenic |
| AGTCAGAGATGACGAGGCAA+AGG | 0.606178 | 8.4:+51613161 | MS.gene38870:CDS |
| GACCGGTGGCATCCTGAACG+TGG | 0.612066 | 8.4:-51613888 | None:intergenic |
| AATGTGTTTACTATTGGCAA+GGG | 0.614045 | 8.4:+51613934 | MS.gene38870:CDS |
| CCTCGTCATCTCTGACTGAG+TGG | 0.618913 | 8.4:-51613155 | None:intergenic |
| ACTGACAAGACTTATCCAGC+TGG | 0.621794 | 8.4:+51612370 | MS.gene38870:CDS |
| CTACCCAGACCCAGTCATCA+GGG | 0.625969 | 8.4:+51613708 | MS.gene38870:CDS |
| CTTTGGTGTCATAAAGCAGA+CGG | 0.627128 | 8.4:-51613119 | None:intergenic |
| TGACTGAGTGGAGACGGAAG+CGG | 0.632899 | 8.4:-51613143 | None:intergenic |
| CCACTCAGTCAGAGATGACG+AGG | 0.634643 | 8.4:+51613155 | MS.gene38870:CDS |
| CATCGAGGAAGCTAGGAAGA+GGG | 0.635832 | 8.4:+51614008 | MS.gene38870:CDS |
| ATCCACGTTCAGGATGCCAC+CGG | 0.637259 | 8.4:+51613886 | MS.gene38870:CDS |
| GTTACTGGTGGTAAGAATAG+GGG | 0.638404 | 8.4:+51613811 | MS.gene38870:CDS |
| ATGGCAGTTCAAGCTCTGCA+AGG | 0.644336 | 8.4:+51613618 | MS.gene38870:intron |
| ATGTGAATGTAACAGGCTAG+AGG | 0.650282 | 8.4:+51612046 | MS.gene38870:intron |
| GTCAAGCATCCAATGCTTGG+GGG | 0.650283 | 8.4:-51612098 | None:intergenic |
| CCCTTGGGAAGAGATACCCA+TGG | 0.652851 | 8.4:-51613964 | None:intergenic |
| CGTCTGCTTTATGACACCAA+AGG | 0.664626 | 8.4:+51613120 | MS.gene38870:CDS |
| AACGTCGTTATGGTTACTGG+TGG | 0.680138 | 8.4:+51613799 | MS.gene38870:CDS |
| AGACATTCCCTAGACTTGTG+TGG | 0.680460 | 8.4:-51612241 | None:intergenic |
| CCATGGGTATCTCTTCCCAA+GGG | 0.685421 | 8.4:+51613964 | MS.gene38870:CDS |
| TGGATGCTTGACAAATTGGG+TGG | 0.687057 | 8.4:+51612109 | MS.gene38870:CDS |
| AGTTGCAAACTCATGACCGG+TGG | 0.693569 | 8.4:-51613902 | None:intergenic |
| TATTAAGCTTACAGTCATCG+AGG | 0.723795 | 8.4:+51613993 | MS.gene38870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACTATACATAAATCTTAT+CGG | - | chr8.4:51613319-51613338 | None:intergenic | 15.0% |
| !! | TATAATAACAGACATAAAAA+TGG | - | chr8.4:51613517-51613536 | None:intergenic | 15.0% |
| !!! | GGTTTTTATGTTAATTTATA+AGG | + | chr8.4:51612649-51612668 | MS.gene38870:intron | 15.0% |
| !! | ATAAAAATGGCATGATTAAA+CGG | - | chr8.4:51613504-51613523 | None:intergenic | 20.0% |
| !! | CATATATATCAAACACAATA+AGG | - | chr8.4:51612029-51612048 | None:intergenic | 20.0% |
| !! | TACAAAGTTATGAGTAATAA+TGG | + | chr8.4:51612723-51612742 | MS.gene38870:intron | 20.0% |
| !! | TATAGTATTTAATTATGCGT+CGG | + | chr8.4:51613331-51613350 | MS.gene38870:intron | 20.0% |
| !! | TTATAAACAGATTGTGAATA+TGG | - | chr8.4:51611873-51611892 | None:intergenic | 20.0% |
| !!! | ATATTTGTATAGAGTATTGA+AGG | + | chr8.4:51612564-51612583 | MS.gene38870:intron | 20.0% |
| !!! | ATTAAGTTGTTTATTCAAAC+AGG | - | chr8.4:51611974-51611993 | None:intergenic | 20.0% |
| !!! | GATTGATGTAATTTTTGTAT+AGG | + | chr8.4:51612198-51612217 | MS.gene38870:intron | 20.0% |
| !!! | TATTTGTATAGAGTATTGAA+GGG | + | chr8.4:51612565-51612584 | MS.gene38870:intron | 20.0% |
| !!! | TTAAGTTGTTTATTCAAACA+GGG | - | chr8.4:51611973-51611992 | None:intergenic | 20.0% |
| !!! | TTTTCAATCTCATTTTGTAA+TGG | + | chr8.4:51611843-51611862 | MS.gene38870:intron | 20.0% |
| ! | ATTTCATCAAGTTTGATGTT+GGG | + | chr8.4:51613776-51613795 | MS.gene38870:CDS | 25.0% |
| ! | GATATATATGTGAATGTAAC+AGG | + | chr8.4:51612039-51612058 | MS.gene38870:intron | 25.0% |
| ! | TGAGTAATAATGGTACATAA+AGG | + | chr8.4:51612733-51612752 | MS.gene38870:intron | 25.0% |
| ! | TTGTATGATATTCTGTATTC+TGG | + | chr8.4:51612981-51613000 | MS.gene38870:intron | 25.0% |
| ! | TTGTCTTCAAATAAAACCAT+GGG | - | chr8.4:51612833-51612852 | None:intergenic | 25.0% |
| ! | TTTAATAAGTAGATCCAAAC+AGG | + | chr8.4:51612002-51612021 | MS.gene38870:intron | 25.0% |
| ! | TTTGTCTTCAAATAAAACCA+TGG | - | chr8.4:51612834-51612853 | None:intergenic | 25.0% |
| !! | AACTTTTGAATTATGATAGC+TGG | + | chr8.4:51612530-51612549 | MS.gene38870:intron | 25.0% |
| !! | ACTTTTGAATTATGATAGCT+GGG | + | chr8.4:51612531-51612550 | MS.gene38870:intron | 25.0% |
| !! | TATGTGCTGTTAATATTGTT+TGG | + | chr8.4:51612446-51612465 | MS.gene38870:intron | 25.0% |
| !!! | GTTTTATTTGAAGACAAAAC+AGG | + | chr8.4:51612836-51612855 | MS.gene38870:intron | 25.0% |
| !!! | TTGAAGGGTTAGTTTAATAA+AGG | + | chr8.4:51612580-51612599 | MS.gene38870:intron | 25.0% |
| AACATTCATGATATGAAGCA+CGG | - | chr8.4:51613408-51613427 | None:intergenic | 30.0% | |
| AATGTGTTTACTATTGGCAA+GGG | + | chr8.4:51613934-51613953 | MS.gene38870:CDS | 30.0% | |
| ATCCAAACGAATCCTAATAA+TGG | + | chr8.4:51612804-51612823 | MS.gene38870:intron | 30.0% | |
| CAATTATTCTAGACGAAGAT+CGG | - | chr8.4:51612416-51612435 | None:intergenic | 30.0% | |
| GATATTCAGTAAGCAAATGA+AGG | - | chr8.4:51613189-51613208 | None:intergenic | 30.0% | |
| GATTTCATCAAGTTTGATGT+TGG | + | chr8.4:51613775-51613794 | MS.gene38870:CDS | 30.0% | |
| GCTTATGCAAAACAGTAAAT+AGG | + | chr8.4:51612628-51612647 | MS.gene38870:intron | 30.0% | |
| TACATAAATCTTATCGGTGT+CGG | - | chr8.4:51613313-51613332 | None:intergenic | 30.0% | |
| TAGTTTAATAAAGGCCTGTT+TGG | + | chr8.4:51612589-51612608 | MS.gene38870:intron | 30.0% | |
| TTCCATTATTAGGATTCGTT+TGG | - | chr8.4:51612809-51612828 | None:intergenic | 30.0% | |
| TTGGTCAATGTGTTTACTAT+TGG | + | chr8.4:51613928-51613947 | MS.gene38870:CDS | 30.0% | |
| ! | AAGAACAGAGAAAAGCATAA+GGG | + | chr8.4:51613850-51613869 | MS.gene38870:CDS | 30.0% |
| AAACACAATAAGGACCTGTT+TGG | - | chr8.4:51612019-51612038 | None:intergenic | 35.0% | |
| AACCATGGGATTCCATTATT+AGG | - | chr8.4:51612819-51612838 | None:intergenic | 35.0% | |
| AATAAAGGCCTGTTTGGATT+AGG | + | chr8.4:51612595-51612614 | MS.gene38870:intron | 35.0% | |
| AGAATAAGCCTAATCCAAAC+AGG | - | chr8.4:51612606-51612625 | None:intergenic | 35.0% | |
| CAATGTGTTTACTATTGGCA+AGG | + | chr8.4:51613933-51613952 | MS.gene38870:CDS | 35.0% | |
| CATCATAGGTGTTAAGGTAT+GGG | - | chr8.4:51613675-51613694 | None:intergenic | 35.0% | |
| CATTGGATGCTTGACAAATT+GGG | + | chr8.4:51612106-51612125 | MS.gene38870:CDS | 35.0% | |
| GTTCTCTGACTCATTTGATT+TGG | + | chr8.4:51613011-51613030 | MS.gene38870:intron | 35.0% | |
| TATTAAGCTTACAGTCATCG+AGG | + | chr8.4:51613993-51614012 | MS.gene38870:CDS | 35.0% | |
| TGAGAATAGCAATGACTTCA+CGG | - | chr8.4:51612315-51612334 | None:intergenic | 35.0% | |
| TTCCTTGTATGTGATGTACA+TGG | + | chr8.4:51613599-51613618 | MS.gene38870:intron | 35.0% | |
| TTTCGCAAAATCAGAATGAG+TGG | - | chr8.4:51612268-51612287 | None:intergenic | 35.0% | |
| ! | ATCCTAATAATGGAATCCCA+TGG | + | chr8.4:51612814-51612833 | MS.gene38870:intron | 35.0% |
| ! | CAAGAACAGAGAAAAGCATA+AGG | + | chr8.4:51613849-51613868 | MS.gene38870:CDS | 35.0% |
| ! | TCCTAACTTTTCCATCAACA+AGG | - | chr8.4:51612351-51612370 | None:intergenic | 35.0% |
| ! | TCCTTGTTGATGGAAAAGTT+AGG | + | chr8.4:51612347-51612366 | MS.gene38870:CDS | 35.0% |
| ! | TTATGATAGCTGGGTATTGT+AGG | + | chr8.4:51612540-51612559 | MS.gene38870:intron | 35.0% |
| !! | ACGAAGCACTGATACTTATA+CGG | + | chr8.4:51613263-51613282 | MS.gene38870:intron | 35.0% |
| !! | GATTGAAGAAGCATTTGAAG+AGG | + | chr8.4:51612068-51612087 | MS.gene38870:CDS | 35.0% |
| !!! | GGAAGCTCTCATTTGTTTTA+GGG | - | chr8.4:51613101-51613120 | None:intergenic | 35.0% |
| AAGCTTAATACCCTTACCCT+TGG | - | chr8.4:51613983-51614002 | None:intergenic | 40.0% | |
| AAGGTACGTTCAGTCCAATT+CGG | + | chr8.4:51613637-51613656 | MS.gene38870:CDS | 40.0% | |
| ACTTATACGGACACAAGACA+CGG | + | chr8.4:51613276-51613295 | MS.gene38870:intron | 40.0% | |
| ACTTATCCAGCTGGATTCAT+GGG | + | chr8.4:51612379-51612398 | MS.gene38870:CDS | 40.0% | |
| AGCTTAATACCCTTACCCTT+GGG | - | chr8.4:51613982-51614001 | None:intergenic | 40.0% | |
| ATGTGAATGTAACAGGCTAG+AGG | + | chr8.4:51612046-51612065 | MS.gene38870:intron | 40.0% | |
| CCATACCTTAACACCTATGA+TGG | + | chr8.4:51613673-51613692 | MS.gene38870:CDS | 40.0% | |
| CCATCATAGGTGTTAAGGTA+TGG | - | chr8.4:51613676-51613695 | None:intergenic | 40.0% | |
| GCATTGGATGCTTGACAAAT+TGG | + | chr8.4:51612105-51612124 | MS.gene38870:CDS | 40.0% | |
| GGTTACTGGTGGTAAGAATA+GGG | + | chr8.4:51613810-51613829 | MS.gene38870:CDS | 40.0% | |
| GTATAAGTATCAGTGCTTCG+TGG | - | chr8.4:51613264-51613283 | None:intergenic | 40.0% | |
| GTTACTGGTGGTAAGAATAG+GGG | + | chr8.4:51613811-51613830 | MS.gene38870:CDS | 40.0% | |
| TACGACCATCATAGGTGTTA+AGG | - | chr8.4:51613681-51613700 | None:intergenic | 40.0% | |
| TGCCATGTACATCACATACA+AGG | - | chr8.4:51613604-51613623 | None:intergenic | 40.0% | |
| TGCTCAGTTTAGGCATGTTT+CGG | - | chr8.4:51613372-51613391 | None:intergenic | 40.0% | |
| TGGTTACTGGTGGTAAGAAT+AGG | + | chr8.4:51613809-51613828 | MS.gene38870:CDS | 40.0% | |
| TTGTCAAGCATCCAATGCTT+GGG | - | chr8.4:51612103-51612122 | None:intergenic | 40.0% | |
| TTTGTCAAGCATCCAATGCT+TGG | - | chr8.4:51612104-51612123 | None:intergenic | 40.0% | |
| !! | CGGAAGCTCTCATTTGTTTT+AGG | - | chr8.4:51613102-51613121 | None:intergenic | 40.0% |
| !! | CTTTGGTGTCATAAAGCAGA+CGG | - | chr8.4:51613122-51613141 | None:intergenic | 40.0% |
| !! | TGACTCATTTGATTTGGCTG+TGG | + | chr8.4:51613017-51613036 | MS.gene38870:intron | 40.0% |
| AACGTCGTTATGGTTACTGG+TGG | + | chr8.4:51613799-51613818 | MS.gene38870:CDS | 45.0% | |
| ACTGACAAGACTTATCCAGC+TGG | + | chr8.4:51612370-51612389 | MS.gene38870:CDS | 45.0% | |
| AGACATTCCCTAGACTTGTG+TGG | - | chr8.4:51612244-51612263 | None:intergenic | 45.0% | |
| AGGTACGTTCAGTCCAATTC+GGG | + | chr8.4:51613638-51613657 | MS.gene38870:CDS | 45.0% | |
| ATTCGAGACAATCCACGTTC+AGG | + | chr8.4:51613876-51613895 | MS.gene38870:CDS | 45.0% | |
| CAACGACATGTCCTTGTTGA+TGG | + | chr8.4:51612337-51612356 | MS.gene38870:CDS | 45.0% | |
| CGTCTGCTTTATGACACCAA+AGG | + | chr8.4:51613120-51613139 | MS.gene38870:CDS | 45.0% | |
| GACTTATCCAGCTGGATTCA+TGG | + | chr8.4:51612378-51612397 | MS.gene38870:CDS | 45.0% | |
| GTATCTCTTCCCAAGGGTAA+GGG | + | chr8.4:51613970-51613989 | MS.gene38870:CDS | 45.0% | |
| TCATGAGTTTGCAACTCGGT+TGG | + | chr8.4:51613909-51613928 | MS.gene38870:CDS | 45.0% | |
| TGACACCATCAAGCTGGATT+TGG | + | chr8.4:51613735-51613754 | MS.gene38870:CDS | 45.0% | |
| TGATGTTGGGAACGTCGTTA+TGG | + | chr8.4:51613789-51613808 | MS.gene38870:CDS | 45.0% | |
| TGGATGCTTGACAAATTGGG+TGG | + | chr8.4:51612109-51612128 | MS.gene38870:CDS | 45.0% | |
| TGTCAAGCATCCAATGCTTG+GGG | - | chr8.4:51612102-51612121 | None:intergenic | 45.0% | |
| TGTCATTAGCCCTGATGACT+GGG | - | chr8.4:51613720-51613739 | None:intergenic | 45.0% | |
| TTACAGTCATCGAGGAAGCT+AGG | + | chr8.4:51614001-51614020 | MS.gene38870:CDS | 45.0% | |
| TTCATACCCATGAATCCAGC+TGG | - | chr8.4:51612388-51612407 | None:intergenic | 45.0% | |
| TTCCTCCAAATCCAGCTTGA+TGG | - | chr8.4:51613743-51613762 | None:intergenic | 45.0% | |
| ! | GTTTAGGCATGTTTCGGTGT+TGG | - | chr8.4:51613366-51613385 | None:intergenic | 45.0% |
| AGTCAGAGATGACGAGGCAA+AGG | + | chr8.4:51613161-51613180 | MS.gene38870:CDS | 50.0% | |
| AGTTGCAAACTCATGACCGG+TGG | - | chr8.4:51613905-51613924 | None:intergenic | 50.0% | |
| ATGGCAGTTCAAGCTCTGCA+AGG | + | chr8.4:51613618-51613637 | MS.gene38870:intron | 50.0% | |
| CACCATCAAGCTGGATTTGG+AGG | + | chr8.4:51613738-51613757 | MS.gene38870:CDS | 50.0% | |
| CATCGAGGAAGCTAGGAAGA+GGG | + | chr8.4:51614008-51614027 | MS.gene38870:CDS | 50.0% | |
| CATCTCTGACTGAGTGGAGA+CGG | - | chr8.4:51613152-51613171 | None:intergenic | 50.0% | |
| CCATGGGTATCTCTTCCCAA+GGG | + | chr8.4:51613964-51613983 | MS.gene38870:CDS | 50.0% | |
| CCGAGTTGCAAACTCATGAC+CGG | - | chr8.4:51613908-51613927 | None:intergenic | 50.0% | |
| CCGGTCATGAGTTTGCAACT+CGG | + | chr8.4:51613905-51613924 | MS.gene38870:CDS | 50.0% | |
| GATATGAAGCACGGACACCA+CGG | - | chr8.4:51613399-51613418 | None:intergenic | 50.0% | |
| GGATACCTTTCTGCCCGAAT+TGG | - | chr8.4:51613654-51613673 | None:intergenic | 50.0% | |
| GGCTAATGACACCATCAAGC+TGG | + | chr8.4:51613729-51613748 | MS.gene38870:CDS | 50.0% | |
| GGGAACGTCGTTATGGTTAC+TGG | + | chr8.4:51613796-51613815 | MS.gene38870:CDS | 50.0% | |
| GGTAAGAATAGGGGACGTGT+TGG | + | chr8.4:51613820-51613839 | MS.gene38870:CDS | 50.0% | |
| GGTATCTCTTCCCAAGGGTA+AGG | + | chr8.4:51613969-51613988 | MS.gene38870:CDS | 50.0% | |
| GTCAAGCATCCAATGCTTGG+GGG | - | chr8.4:51612101-51612120 | None:intergenic | 50.0% | |
| GTCAGGACCACACAAGTCTA+GGG | + | chr8.4:51612234-51612253 | MS.gene38870:CDS | 50.0% | |
| TCAGTCCAATTCGGGCAGAA+AGG | + | chr8.4:51613646-51613665 | MS.gene38870:CDS | 50.0% | |
| TCATCGAGGAAGCTAGGAAG+AGG | + | chr8.4:51614007-51614026 | MS.gene38870:CDS | 50.0% | |
| ! | GTGTCATTAGCCCTGATGAC+TGG | - | chr8.4:51613721-51613740 | None:intergenic | 50.0% |
| AGACTTGTGTGGTCCTGACG+AGG | - | chr8.4:51612233-51612252 | None:intergenic | 55.0% | |
| ATCCACGTTCAGGATGCCAC+CGG | + | chr8.4:51613886-51613905 | MS.gene38870:CDS | 55.0% | |
| CCACGGACACTGCTCAGTTT+AGG | - | chr8.4:51613382-51613401 | None:intergenic | 55.0% | |
| CCACTCAGTCAGAGATGACG+AGG | + | chr8.4:51613155-51613174 | MS.gene38870:CDS | 55.0% | |
| CCCTTGGGAAGAGATACCCA+TGG | - | chr8.4:51613967-51613986 | None:intergenic | 55.0% | |
| CCTAAACTGAGCAGTGTCCG+TGG | + | chr8.4:51613379-51613398 | MS.gene38870:intron | 55.0% | |
| CCTCGTCATCTCTGACTGAG+TGG | - | chr8.4:51613158-51613177 | None:intergenic | 55.0% | |
| CGTCAGGACCACACAAGTCT+AGG | + | chr8.4:51612233-51612252 | MS.gene38870:CDS | 55.0% | |
| CTACCCAGACCCAGTCATCA+GGG | + | chr8.4:51613708-51613727 | MS.gene38870:CDS | 55.0% | |
| GACTTGTGTGGTCCTGACGA+GGG | - | chr8.4:51612232-51612251 | None:intergenic | 55.0% | |
| GCCATGGGTATCTCTTCCCA+AGG | + | chr8.4:51613963-51613982 | MS.gene38870:CDS | 55.0% | |
| TAGCCCTGATGACTGGGTCT+GGG | - | chr8.4:51613714-51613733 | None:intergenic | 55.0% | |
| TAGGCTCCAAAACCCTCGTC+AGG | + | chr8.4:51612217-51612236 | MS.gene38870:intron | 55.0% | |
| TGACTGAGTGGAGACGGAAG+CGG | - | chr8.4:51613146-51613165 | None:intergenic | 55.0% | |
| TGATGACTGGGTCTGGGTAG+CGG | - | chr8.4:51613708-51613727 | None:intergenic | 55.0% | |
| TTAGCCCTGATGACTGGGTC+TGG | - | chr8.4:51613715-51613734 | None:intergenic | 55.0% | |
| ! | GCGGACTGTACGACCATCAT+AGG | - | chr8.4:51613689-51613708 | None:intergenic | 55.0% |
| ! | TGGCAAGGGCACAAAGCCAT+GGG | + | chr8.4:51613948-51613967 | MS.gene38870:CDS | 55.0% |
| ! | TGTGGTCCTGACGAGGGTTT+TGG | - | chr8.4:51612226-51612245 | None:intergenic | 55.0% |
| ! | TTGGCAAGGGCACAAAGCCA+TGG | + | chr8.4:51613947-51613966 | MS.gene38870:CDS | 55.0% |
| GCTACCCAGACCCAGTCATC+AGG | + | chr8.4:51613707-51613726 | MS.gene38870:CDS | 60.0% | |
| GGCTCAATGCCCCCAAGCAT+TGG | + | chr8.4:51612089-51612108 | MS.gene38870:CDS | 60.0% | |
| GACCGGTGGCATCCTGAACG+TGG | - | chr8.4:51613891-51613910 | None:intergenic | 65.0% | |
| GTGGAGACGGAAGCGGCCTT+TGG | - | chr8.4:51613139-51613158 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 51611796 | 51614059 | 51611796 | ID=MS.gene38870 |
| chr8.4 | mRNA | 51611796 | 51614059 | 51611796 | ID=MS.gene38870.t1;Parent=MS.gene38870 |
| chr8.4 | exon | 51611796 | 51611798 | 51611796 | ID=MS.gene38870.t1.exon1;Parent=MS.gene38870.t1 |
| chr8.4 | CDS | 51611796 | 51611798 | 51611796 | ID=cds.MS.gene38870.t1;Parent=MS.gene38870.t1 |
| chr8.4 | exon | 51612061 | 51612138 | 51612061 | ID=MS.gene38870.t1.exon2;Parent=MS.gene38870.t1 |
| chr8.4 | CDS | 51612061 | 51612138 | 51612061 | ID=cds.MS.gene38870.t1;Parent=MS.gene38870.t1 |
| chr8.4 | exon | 51612220 | 51612400 | 51612220 | ID=MS.gene38870.t1.exon3;Parent=MS.gene38870.t1 |
| chr8.4 | CDS | 51612220 | 51612400 | 51612220 | ID=cds.MS.gene38870.t1;Parent=MS.gene38870.t1 |
| chr8.4 | exon | 51613085 | 51613182 | 51613085 | ID=MS.gene38870.t1.exon4;Parent=MS.gene38870.t1 |
| chr8.4 | CDS | 51613085 | 51613182 | 51613085 | ID=cds.MS.gene38870.t1;Parent=MS.gene38870.t1 |
| chr8.4 | exon | 51613625 | 51614059 | 51613625 | ID=MS.gene38870.t1.exon5;Parent=MS.gene38870.t1 |
| chr8.4 | CDS | 51613625 | 51614059 | 51613625 | ID=cds.MS.gene38870.t1;Parent=MS.gene38870.t1 |
| Gene Sequence |
| Protein sequence |
