Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99501.t1 | XP_003623356.1 | 97 | 265 | 8 | 0 | 1 | 265 | 1 | 265 | 9.90E-145 | 522.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99501.t1 | Q93VH9 | 91.5 | 260 | 22 | 0 | 1 | 260 | 1 | 260 | 6.7e-142 | 504.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99501.t1 | G7KT73 | 97.0 | 265 | 8 | 0 | 1 | 265 | 1 | 265 | 7.2e-145 | 522.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene38870 | MS.gene99501 | PPI |
| MS.gene27648 | MS.gene99501 | PPI |
| MS.gene99501 | MS.gene073888 | PPI |
| MS.gene99501 | MS.gene053443 | PPI |
| MS.gene069005 | MS.gene99501 | PPI |
| MS.gene53517 | MS.gene99501 | PPI |
| MS.gene99501 | MS.gene83444 | PPI |
| MS.gene95672 | MS.gene99501 | PPI |
| MS.gene99501 | MS.gene52173 | PPI |
| MS.gene59369 | MS.gene99501 | PPI |
| MS.gene99501 | MS.gene010439 | PPI |
| MS.gene071029 | MS.gene99501 | PPI |
| MS.gene028153 | MS.gene99501 | PPI |
| MS.gene74487 | MS.gene99501 | PPI |
| MS.gene047717 | MS.gene99501 | PPI |
| MS.gene72768 | MS.gene99501 | PPI |
| MS.gene82426 | MS.gene99501 | PPI |
| MS.gene43012 | MS.gene99501 | PPI |
| MS.gene041181 | MS.gene99501 | PPI |
| MS.gene99501 | MS.gene032440 | PPI |
| MS.gene035447 | MS.gene99501 | PPI |
| MS.gene023799 | MS.gene99501 | PPI |
| MS.gene42236 | MS.gene99501 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99501.t1 | MTR_7g069950 | 96.981 | 265 | 8 | 0 | 1 | 265 | 1 | 265 | 0.0 | 532 |
| MS.gene99501.t1 | MTR_4g014590 | 96.212 | 264 | 10 | 0 | 1 | 264 | 1 | 264 | 0.0 | 526 |
| MS.gene99501.t1 | MTR_5g018940 | 96.016 | 251 | 10 | 0 | 1 | 251 | 1 | 251 | 0.0 | 503 |
| MS.gene99501.t1 | MTR_5g018940 | 96.016 | 251 | 10 | 0 | 1 | 251 | 1 | 251 | 0.0 | 503 |
| MS.gene99501.t1 | MTR_8g052030 | 96.016 | 251 | 10 | 0 | 1 | 251 | 1 | 251 | 0.0 | 503 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene99501.t1 | AT5G07090 | 91.635 | 263 | 21 | 1 | 1 | 263 | 1 | 262 | 0.0 | 511 |
| MS.gene99501.t1 | AT2G17360 | 91.538 | 260 | 22 | 0 | 1 | 260 | 1 | 260 | 0.0 | 510 |
| MS.gene99501.t1 | AT5G58420 | 91.635 | 263 | 21 | 1 | 1 | 263 | 1 | 262 | 0.0 | 509 |
| MS.gene99501.t1 | AT5G07090 | 91.020 | 245 | 21 | 1 | 19 | 263 | 1 | 244 | 2.23e-171 | 473 |
| MS.gene99501.t1 | AT5G07090 | 91.020 | 245 | 21 | 1 | 19 | 263 | 1 | 244 | 2.23e-171 | 473 |
| MS.gene99501.t1 | AT2G17360 | 92.265 | 181 | 14 | 0 | 1 | 181 | 1 | 181 | 2.79e-126 | 356 |
Find 86 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTGTCATTGGCCTTAATA+AGG | 0.244306 | 7.1:+32221783 | None:intergenic |
| GTCTAGTTTGATTGTGTCAT+TGG | 0.330535 | 7.1:+32221772 | None:intergenic |
| CAATTTGATACCTCTGCCTT+TGG | 0.333358 | 7.1:+32221523 | None:intergenic |
| TTGGGTAATGTCTTCACTAT+TGG | 0.340154 | 7.1:-32221575 | MS.gene99501:CDS |
| CTATCCTGATCCCCTTATTA+AGG | 0.341569 | 7.1:-32221795 | MS.gene99501:CDS |
| TTATCAAGCATCCAATGTTT+TGG | 0.352792 | 7.1:+32222620 | None:intergenic |
| CACATCAAATTTGATGAAAT+CGG | 0.353228 | 7.1:+32221730 | None:intergenic |
| AAGGTACGATCTGTTCAGTT+TGG | 0.367239 | 7.1:-32221866 | MS.gene99501:CDS |
| CAGCGCCATGTTCTAGTTGA+TGG | 0.370577 | 7.1:-32222373 | MS.gene99501:CDS |
| TGTGGTCCAGATGACGGCTT+TGG | 0.371859 | 7.1:+32222487 | None:intergenic |
| TGGTGACTGGAGGAAGGAAC+AGG | 0.391690 | 7.1:-32221694 | MS.gene99501:CDS |
| AGGTACGATCTGTTCAGTTT+GGG | 0.392472 | 7.1:-32221865 | MS.gene99501:CDS |
| GTGGTCCAGATGACGGCTTT+GGG | 0.392493 | 7.1:+32222488 | None:intergenic |
| TGATGTGGGGAATGTTGTTA+TGG | 0.412773 | 7.1:-32221714 | MS.gene99501:CDS |
| CATGAGTTTGCAACCCGATT+GGG | 0.418547 | 7.1:-32221593 | MS.gene99501:CDS |
| GGGAATGTTGTTATGGTGAC+TGG | 0.420835 | 7.1:-32221707 | MS.gene99501:CDS |
| GCGGATTGTACGCCCATCAT+AGG | 0.425274 | 7.1:+32221817 | None:intergenic |
| TGTGTCATTGGCCTTAATAA+GGG | 0.427302 | 7.1:+32221784 | None:intergenic |
| CAGGCCCCAAAGCCGTCATC+TGG | 0.431538 | 7.1:-32222493 | MS.gene99501:CDS |
| GCGGATGGCTGCTTCTCAAC+AGG | 0.434949 | 7.1:-32221477 | MS.gene99501:CDS |
| CCGTATCTGAACACCTATGA+TGG | 0.435718 | 7.1:-32221830 | MS.gene99501:CDS |
| AATTTGATACCTCTGCCTTT+GGG | 0.436861 | 7.1:+32221524 | None:intergenic |
| CTGTTCAGTTTGGGCAGAAA+GGG | 0.449618 | 7.1:-32221856 | MS.gene99501:CDS |
| TGGCAAAGGGTCGAAACCTT+GGG | 0.450674 | 7.1:-32221555 | MS.gene99501:CDS |
| TTAGTCTGTTCCTCAAGATA+AGG | 0.453432 | 7.1:+32222437 | None:intergenic |
| GTGTTGGTGTCATCAAGAAC+AGG | 0.454082 | 7.1:-32221667 | MS.gene99501:CDS |
| CATCTGGACCACACAAATCA+AGG | 0.461785 | 7.1:-32222477 | MS.gene99501:CDS |
| TGCCTTTGATCCTTATCTTG+AGG | 0.467081 | 7.1:-32222447 | MS.gene99501:CDS |
| TTGGCAAAGGGTCGAAACCT+TGG | 0.468363 | 7.1:-32221556 | MS.gene99501:CDS |
| GATTCCGTCTCCACTCTGTA+AGG | 0.474226 | 7.1:-32222056 | MS.gene99501:CDS |
| TTGGCCTTAATAAGGGGATC+AGG | 0.486385 | 7.1:+32221791 | None:intergenic |
| TAGTGAAGACATTACCCAAT+CGG | 0.493541 | 7.1:+32221579 | None:intergenic |
| CATTGGATGCTTGATAAGCT+TGG | 0.495944 | 7.1:-32222614 | MS.gene99501:CDS |
| TCTGTTCAGTTTGGGCAGAA+AGG | 0.500744 | 7.1:-32221857 | MS.gene99501:CDS |
| CGATTTCATCAAATTTGATG+TGG | 0.506182 | 7.1:-32221729 | MS.gene99501:CDS |
| CGTCTTCTCTATGACACTAA+AGG | 0.511614 | 7.1:-32222081 | MS.gene99501:CDS |
| ATTCATGTCCAGGATGCTAC+TGG | 0.515866 | 7.1:-32221617 | MS.gene99501:CDS |
| AGTGAAGACATTACCCAATC+GGG | 0.517824 | 7.1:+32221580 | None:intergenic |
| TCATGAGTTTGCAACCCGAT+TGG | 0.519695 | 7.1:-32221594 | MS.gene99501:CDS |
| ACTCATGACCAGTAGCATCC+TGG | 0.521067 | 7.1:+32221609 | None:intergenic |
| GATTTCATCAAATTTGATGT+GGG | 0.526677 | 7.1:-32221728 | MS.gene99501:CDS |
| CCATCATAGGTGTTCAGATA+CGG | 0.529767 | 7.1:+32221830 | None:intergenic |
| TGACACAATCAAACTAGACT+TGG | 0.533545 | 7.1:-32221768 | MS.gene99501:CDS |
| AGTAGCATCCTGGACATGAA+TGG | 0.557858 | 7.1:+32221619 | None:intergenic |
| TCTCGTGTATTTCAGGCAAG+AGG | 0.559812 | 7.1:-32222674 | MS.gene99501:intron |
| AACATGGCGCTGCATCAAGA+TGG | 0.560254 | 7.1:+32222384 | None:intergenic |
| CCCATACCCATAAAACCAGC+AGG | 0.563703 | 7.1:+32222325 | None:intergenic |
| AATGTCTTCACTATTGGCAA+AGG | 0.564811 | 7.1:-32221569 | MS.gene99501:CDS |
| TATCAAATTGACAGTCATTG+AGG | 0.565699 | 7.1:-32221510 | MS.gene99501:CDS |
| GGCTCAATGCTCCAAAACAT+TGG | 0.567027 | 7.1:-32222631 | MS.gene99501:CDS |
| GATTTGTGTGGTCCAGATGA+CGG | 0.567229 | 7.1:+32222481 | None:intergenic |
| AGGCACTCCCTTGATTTGTG+TGG | 0.570898 | 7.1:+32222469 | None:intergenic |
| ATTTCATCAAATTTGATGTG+GGG | 0.571477 | 7.1:-32221727 | MS.gene99501:CDS |
| ATGTCTTCACTATTGGCAAA+GGG | 0.574289 | 7.1:-32221568 | MS.gene99501:CDS |
| GGAAGGAACAGGGGTCGTGT+TGG | 0.575426 | 7.1:-32221683 | MS.gene99501:CDS |
| TCAAGATAAGGATCAAAGGC+AGG | 0.576690 | 7.1:+32222449 | None:intergenic |
| GTGTCATTGGCCTTAATAAG+GGG | 0.578877 | 7.1:+32221785 | None:intergenic |
| TTCCTCAAGATAAGGATCAA+AGG | 0.581073 | 7.1:+32222445 | None:intergenic |
| TGACAGTCATTGAGGAGGCA+AGG | 0.581078 | 7.1:-32221502 | MS.gene99501:CDS |
| CATCCCTTACAGAGTGGAGA+CGG | 0.583231 | 7.1:+32222052 | None:intergenic |
| CTTTAGTGTCATAGAGAAGA+CGG | 0.588339 | 7.1:+32222082 | None:intergenic |
| GGTGACTGGAGGAAGGAACA+GGG | 0.589958 | 7.1:-32221693 | MS.gene99501:CDS |
| CGTATCTGAACACCTATGAT+GGG | 0.593211 | 7.1:-32221829 | MS.gene99501:CDS |
| TGGATGCTTGATAAGCTTGG+CGG | 0.599051 | 7.1:-32222611 | MS.gene99501:CDS |
| TTTGCAGTTTAAGCTTTGCA+AGG | 0.600506 | 7.1:-32221885 | MS.gene99501:intron |
| CTTCATCATCCCTTACAGAG+TGG | 0.602533 | 7.1:+32222046 | None:intergenic |
| TGTAAGGGATGATGAAGCAA+AGG | 0.603418 | 7.1:-32222040 | MS.gene99501:intron |
| ATTCCGTCTCCACTCTGTAA+GGG | 0.605035 | 7.1:-32222055 | MS.gene99501:CDS |
| GTTTGAAGAAACATTTGAAG+CGG | 0.606217 | 7.1:-32222652 | MS.gene99501:CDS |
| GATGGCTGCTTCTCAACAGG+TGG | 0.606348 | 7.1:-32221474 | MS.gene99501:CDS |
| GTGTCTCTTCCCAAAGGCAG+AGG | 0.606870 | 7.1:-32221533 | MS.gene99501:CDS |
| TCATTGAGGAGGCAAGGAAG+CGG | 0.608089 | 7.1:-32221496 | MS.gene99501:CDS |
| CTTTGCCATCAACTAGAACA+TGG | 0.608587 | 7.1:+32222368 | None:intergenic |
| ACAGACAAGACATATCCTGC+TGG | 0.627165 | 7.1:-32222340 | MS.gene99501:CDS |
| TGAGGAGGCAAGGAAGCGGA+TGG | 0.627602 | 7.1:-32221492 | MS.gene99501:CDS |
| ATCTGGACCACACAAATCAA+GGG | 0.632532 | 7.1:-32222476 | MS.gene99501:CDS |
| TGGTCCAGATGACGGCTTTG+GGG | 0.632723 | 7.1:+32222489 | None:intergenic |
| CCTTGGGTGTCTCTTCCCAA+AGG | 0.641736 | 7.1:-32221539 | MS.gene99501:CDS |
| TAATAAGGGGATCAGGATAG+CGG | 0.659430 | 7.1:+32221798 | None:intergenic |
| CAAATTGACAGTCATTGAGG+AGG | 0.668339 | 7.1:-32221507 | MS.gene99501:CDS |
| CCTTTGGGAAGAGACACCCA+AGG | 0.673569 | 7.1:+32221539 | None:intergenic |
| TTGTTATGGTGACTGGAGGA+AGG | 0.681094 | 7.1:-32221700 | MS.gene99501:CDS |
| AATGTTGTTATGGTGACTGG+AGG | 0.681623 | 7.1:-32221704 | MS.gene99501:CDS |
| AAGAACAGGGAGAAACACAA+AGG | 0.683807 | 7.1:-32221653 | MS.gene99501:CDS |
| GTGACTGGAGGAAGGAACAG+GGG | 0.692053 | 7.1:-32221692 | MS.gene99501:CDS |
| TGTTGGTGTCATCAAGAACA+GGG | 0.707054 | 7.1:-32221666 | MS.gene99501:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAAAATCAATATAAAGA+AGG | + | chr7.1:32223487-32223506 | None:intergenic | 10.0% |
| !! | TTATATTTATATAAACAACA+TGG | - | chr7.1:32223456-32223475 | MS.gene99501:intron | 10.0% |
| !!! | AATTTTTTACTTTGAATAAT+TGG | - | chr7.1:32223153-32223172 | MS.gene99501:intron | 10.0% |
| !! | AAATCATCAAACATTATTAA+TGG | + | chr7.1:32222299-32222318 | None:intergenic | 15.0% |
| !! | ATAAAATAATATAAACACAG+TGG | + | chr7.1:32222854-32222873 | None:intergenic | 15.0% |
| !! | TTAATAATGTATAATGATGT+AGG | - | chr7.1:32222410-32222429 | MS.gene99501:CDS | 15.0% |
| !!! | ACATCTACAAATAATTTTAA+GGG | + | chr7.1:32222455-32222474 | None:intergenic | 15.0% |
| !!! | TTTTATGTTCTTAACTAAAA+CGG | + | chr7.1:32221785-32221804 | None:intergenic | 15.0% |
| !! | AAAAATTACAGATATTGTGA+AGG | + | chr7.1:32223409-32223428 | None:intergenic | 20.0% |
| !! | CTTAAAATTATTTGTAGATG+TGG | - | chr7.1:32222454-32222473 | MS.gene99501:CDS | 20.0% |
| !! | TATTTATATAAACAACATGG+TGG | - | chr7.1:32223459-32223478 | MS.gene99501:intron | 20.0% |
| !!! | AATTCAGTTTTTCAATGTTA+TGG | - | chr7.1:32222236-32222255 | MS.gene99501:intron | 20.0% |
| !!! | ATTTTTGTTGATTGTAATGT+TGG | - | chr7.1:32221545-32221564 | MS.gene99501:CDS | 20.0% |
| !!! | CACATCTACAAATAATTTTA+AGG | + | chr7.1:32222456-32222475 | None:intergenic | 20.0% |
| !!! | GAGTTTATTTCAAGTTAATT+TGG | + | chr7.1:32221916-32221935 | None:intergenic | 20.0% |
| !!! | TCTGTTTGAATTTTATTATC+TGG | - | chr7.1:32221687-32221706 | MS.gene99501:CDS | 20.0% |
| !!! | TGTGAATGAAATTTTAATGT+TGG | - | chr7.1:32221632-32221651 | MS.gene99501:CDS | 20.0% |
| !!! | TTATGTTGTGAATATTGATT+TGG | - | chr7.1:32222145-32222164 | MS.gene99501:intron | 20.0% |
| !!! | TTTTTGTTGATTGTAATGTT+GGG | - | chr7.1:32221546-32221565 | MS.gene99501:CDS | 20.0% |
| ! | AAACCTAGAATAAGAAAGAA+AGG | + | chr7.1:32222558-32222577 | None:intergenic | 25.0% |
| ! | AACGAGTAAGAAAAAATCAT+TGG | + | chr7.1:32222208-32222227 | None:intergenic | 25.0% |
| ! | ATACTAGCAAAATTCTCAAA+TGG | + | chr7.1:32223191-32223210 | None:intergenic | 25.0% |
| ! | ATTTCATCAAATTTGATGTG+GGG | - | chr7.1:32223686-32223705 | MS.gene99501:intron | 25.0% |
| ! | CACATCAAATTTGATGAAAT+CGG | + | chr7.1:32223686-32223705 | None:intergenic | 25.0% |
| ! | GATTTCATCAAATTTGATGT+GGG | - | chr7.1:32223685-32223704 | MS.gene99501:intron | 25.0% |
| ! | TTTAGACAATATAACCAAGT+AGG | - | chr7.1:32223210-32223229 | MS.gene99501:intron | 25.0% |
| !! | ATTGAATTTCTTTGTTGTAC+AGG | - | chr7.1:32222901-32222920 | MS.gene99501:intron | 25.0% |
| AATATACGAGTGGATAACAT+TGG | + | chr7.1:32221856-32221875 | None:intergenic | 30.0% | |
| AATTATTTGTAGATGTGGCT+AGG | - | chr7.1:32222459-32222478 | MS.gene99501:CDS | 30.0% | |
| AGATGTTTACTCTTGTCTTA+AGG | - | chr7.1:32222108-32222127 | MS.gene99501:CDS | 30.0% | |
| ATTTAGATTAGACAGTCAAC+TGG | - | chr7.1:32221944-32221963 | MS.gene99501:intron | 30.0% | |
| CAATCAGAAACAATCAACTA+AGG | + | chr7.1:32221582-32221601 | None:intergenic | 30.0% | |
| CGATTTCATCAAATTTGATG+TGG | - | chr7.1:32223684-32223703 | MS.gene99501:intron | 30.0% | |
| CTACCTTTCTTTCTTATTCT+AGG | - | chr7.1:32222552-32222571 | MS.gene99501:intron | 30.0% | |
| CTTATGTTGTATGCTTTCAT+CGG | - | chr7.1:32222604-32222623 | MS.gene99501:CDS | 30.0% | |
| GTTTGAAGAAACATTTGAAG+CGG | - | chr7.1:32222761-32222780 | MS.gene99501:intron | 30.0% | |
| TAACTGGGAATACTAAACAA+CGG | + | chr7.1:32222518-32222537 | None:intergenic | 30.0% | |
| TATCAAATTGACAGTCATTG+AGG | - | chr7.1:32223903-32223922 | MS.gene99501:intron | 30.0% | |
| TGCATACAATCTCATTTCAT+TGG | - | chr7.1:32221997-32222016 | MS.gene99501:intron | 30.0% | |
| TTTGTGTGTAATGTTGAATG+TGG | - | chr7.1:32221728-32221747 | MS.gene99501:CDS | 30.0% | |
| ! | AAGAAGTGTAATTGTAGTGT+AGG | + | chr7.1:32221482-32221501 | None:intergenic | 30.0% |
| ! | AGAAGTGTAATTGTAGTGTA+GGG | + | chr7.1:32221481-32221500 | None:intergenic | 30.0% |
| ! | TAGTTTTTCTCGTGTATTTC+AGG | - | chr7.1:32222732-32222751 | MS.gene99501:intron | 30.0% |
| ! | TTATCAAGCATCCAATGTTT+TGG | + | chr7.1:32222796-32222815 | None:intergenic | 30.0% |
| ! | TTGTATGCAGTAACTGTTTT+AGG | + | chr7.1:32221986-32222005 | None:intergenic | 30.0% |
| ! | TTTAGAATCACAAACCTACT+TGG | + | chr7.1:32223227-32223246 | None:intergenic | 30.0% |
| !! | TAGTTCTAAGCCTGAATAAT+TGG | - | chr7.1:32222339-32222358 | MS.gene99501:CDS | 30.0% |
| AAGCTTAAACTGCAAAAGGT+TGG | + | chr7.1:32223524-32223543 | None:intergenic | 35.0% | |
| AATACTAAACAACGGAACTG+AGG | + | chr7.1:32222510-32222529 | None:intergenic | 35.0% | |
| AATGTCTTCACTATTGGCAA+AGG | - | chr7.1:32223844-32223863 | MS.gene99501:intron | 35.0% | |
| AATTTGATACCTCTGCCTTT+GGG | + | chr7.1:32223892-32223911 | None:intergenic | 35.0% | |
| ACTCTTGTCTTAAGGTTTCA+GGG | - | chr7.1:32222116-32222135 | MS.gene99501:CDS | 35.0% | |
| AGAACTAGTACTAGTAGACA+TGG | + | chr7.1:32222326-32222345 | None:intergenic | 35.0% | |
| ATGCCATGTCTACTAATTAC+TGG | - | chr7.1:32221663-32221682 | MS.gene99501:CDS | 35.0% | |
| ATGTCTTCACTATTGGCAAA+GGG | - | chr7.1:32223845-32223864 | MS.gene99501:intron | 35.0% | |
| CTTTAGTGTCATAGAGAAGA+CGG | + | chr7.1:32223334-32223353 | None:intergenic | 35.0% | |
| GTATATTCTCTAATCGCGAT+AGG | - | chr7.1:32221869-32221888 | MS.gene99501:CDS | 35.0% | |
| TACAATCTCATTTCATTGGC+TGG | - | chr7.1:32222001-32222020 | MS.gene99501:intron | 35.0% | |
| TACTCTTGTCTTAAGGTTTC+AGG | - | chr7.1:32222115-32222134 | MS.gene99501:CDS | 35.0% | |
| TAGTGAAGACATTACCCAAT+CGG | + | chr7.1:32223837-32223856 | None:intergenic | 35.0% | |
| TCAGAATGATGTCCATACAA+AGG | + | chr7.1:32222830-32222849 | None:intergenic | 35.0% | |
| TGACACAATCAAACTAGACT+TGG | - | chr7.1:32223645-32223664 | MS.gene99501:intron | 35.0% | |
| TGCAAAGCTTAAACTGCAAA+AGG | + | chr7.1:32223528-32223547 | None:intergenic | 35.0% | |
| TTAACAATGCCGTGCAATTT+AGG | + | chr7.1:32223121-32223140 | None:intergenic | 35.0% | |
| TTAGTCTGTTCCTCAAGATA+AGG | + | chr7.1:32222979-32222998 | None:intergenic | 35.0% | |
| TTCCTCAAGATAAGGATCAA+AGG | + | chr7.1:32222971-32222990 | None:intergenic | 35.0% | |
| TTGGGTAATGTCTTCACTAT+TGG | - | chr7.1:32223838-32223857 | MS.gene99501:intron | 35.0% | |
| TTTGCAGTTTAAGCTTTGCA+AGG | - | chr7.1:32223528-32223547 | MS.gene99501:intron | 35.0% | |
| ! | ACAATCTCATTTCATTGGCT+GGG | - | chr7.1:32222002-32222021 | MS.gene99501:intron | 35.0% |
| ! | AGTTTGAAACACTCTGTAAC+TGG | + | chr7.1:32222534-32222553 | None:intergenic | 35.0% |
| ! | GTCTAGTTTGATTGTGTCAT+TGG | + | chr7.1:32223644-32223663 | None:intergenic | 35.0% |
| ! | GTTTGAAACACTCTGTAACT+GGG | + | chr7.1:32222533-32222552 | None:intergenic | 35.0% |
| !! | TGTGTCATTGGCCTTAATAA+GGG | + | chr7.1:32223632-32223651 | None:intergenic | 35.0% |
| !! | TTGTGTCATTGGCCTTAATA+AGG | + | chr7.1:32223633-32223652 | None:intergenic | 35.0% |
| !!! | ACATATCCTGCTGGTTTTAT+GGG | - | chr7.1:32223082-32223101 | MS.gene99501:intron | 35.0% |
| AAACTGCAAAAGGTTGGAGA+GGG | + | chr7.1:32223518-32223537 | None:intergenic | 40.0% | |
| AAGAACAGGGAGAAACACAA+AGG | - | chr7.1:32223760-32223779 | MS.gene99501:intron | 40.0% | |
| AAGGTACGATCTGTTCAGTT+TGG | - | chr7.1:32223547-32223566 | MS.gene99501:intron | 40.0% | |
| AATGTTGTTATGGTGACTGG+AGG | - | chr7.1:32223709-32223728 | MS.gene99501:intron | 40.0% | |
| ACGCTGATGTCCAATTATTC+AGG | + | chr7.1:32222352-32222371 | None:intergenic | 40.0% | |
| AGGTACGATCTGTTCAGTTT+GGG | - | chr7.1:32223548-32223567 | MS.gene99501:intron | 40.0% | |
| AGTGAAGACATTACCCAATC+GGG | + | chr7.1:32223836-32223855 | None:intergenic | 40.0% | |
| ATCTGGACCACACAAATCAA+GGG | - | chr7.1:32222937-32222956 | MS.gene99501:intron | 40.0% | |
| CAAATTGACAGTCATTGAGG+AGG | - | chr7.1:32223906-32223925 | MS.gene99501:intron | 40.0% | |
| CAATTTGATACCTCTGCCTT+TGG | + | chr7.1:32223893-32223912 | None:intergenic | 40.0% | |
| CATTGGATGCTTGATAAGCT+TGG | - | chr7.1:32222799-32222818 | MS.gene99501:intron | 40.0% | |
| CCATCATAGGTGTTCAGATA+CGG | + | chr7.1:32223586-32223605 | None:intergenic | 40.0% | |
| CGTATCTGAACACCTATGAT+GGG | - | chr7.1:32223584-32223603 | MS.gene99501:intron | 40.0% | |
| CGTCTTCTCTATGACACTAA+AGG | - | chr7.1:32223332-32223351 | MS.gene99501:intron | 40.0% | |
| CTATCCTGATCCCCTTATTA+AGG | - | chr7.1:32223618-32223637 | MS.gene99501:intron | 40.0% | |
| CTTTGCCATCAACTAGAACA+TGG | + | chr7.1:32223048-32223067 | None:intergenic | 40.0% | |
| GAACTGAGGAATCATGTGAA+CGG | + | chr7.1:32222496-32222515 | None:intergenic | 40.0% | |
| GAGCCAGTAATTAGTAGACA+TGG | + | chr7.1:32221669-32221688 | None:intergenic | 40.0% | |
| GCGATTAGAGAATATACGAG+TGG | + | chr7.1:32221866-32221885 | None:intergenic | 40.0% | |
| TAAACTGCAAAAGGTTGGAG+AGG | + | chr7.1:32223519-32223538 | None:intergenic | 40.0% | |
| TAATAAGGGGATCAGGATAG+CGG | + | chr7.1:32223618-32223637 | None:intergenic | 40.0% | |
| TCAAGATAAGGATCAAAGGC+AGG | + | chr7.1:32222967-32222986 | None:intergenic | 40.0% | |
| TGATGTGGGGAATGTTGTTA+TGG | - | chr7.1:32223699-32223718 | MS.gene99501:intron | 40.0% | |
| TGCCTTTGATCCTTATCTTG+AGG | - | chr7.1:32222966-32222985 | MS.gene99501:intron | 40.0% | |
| TGTAAGGGATGATGAAGCAA+AGG | - | chr7.1:32223373-32223392 | MS.gene99501:intron | 40.0% | |
| TGTCTTAAGGTTTCAGGGTT+AGG | - | chr7.1:32222121-32222140 | MS.gene99501:intron | 40.0% | |
| ! | GAGAAGACGGAAGTTTTCAT+TGG | + | chr7.1:32223321-32223340 | None:intergenic | 40.0% |
| ! | GTTTTATGGGTATGGGCATT+AGG | - | chr7.1:32223095-32223114 | MS.gene99501:intron | 40.0% |
| !! | ACGGAAGTTTTCATTGGTCT+TGG | + | chr7.1:32223315-32223334 | None:intergenic | 40.0% |
| !! | GTGTCATTGGCCTTAATAAG+GGG | + | chr7.1:32223631-32223650 | None:intergenic | 40.0% |
| !! | TGTTGGTGTCATCAAGAACA+GGG | - | chr7.1:32223747-32223766 | MS.gene99501:intron | 40.0% |
| !!! | CGGAAGTTTTCATTGGTCTT+GGG | + | chr7.1:32223314-32223333 | None:intergenic | 40.0% |
| !!! | GACATATCCTGCTGGTTTTA+TGG | - | chr7.1:32223081-32223100 | MS.gene99501:intron | 40.0% |
| !!! | TTTTGAGACCATTCATGTCC+AGG | - | chr7.1:32223786-32223805 | MS.gene99501:intron | 40.0% |
| ACAGACAAGACATATCCTGC+TGG | - | chr7.1:32223073-32223092 | MS.gene99501:intron | 45.0% | |
| AGTAGCATCCTGGACATGAA+TGG | + | chr7.1:32223797-32223816 | None:intergenic | 45.0% | |
| ATTCATGTCCAGGATGCTAC+TGG | - | chr7.1:32223796-32223815 | MS.gene99501:intron | 45.0% | |
| ATTCCGTCTCCACTCTGTAA+GGG | - | chr7.1:32223358-32223377 | MS.gene99501:intron | 45.0% | |
| CATCTGGACCACACAAATCA+AGG | - | chr7.1:32222936-32222955 | MS.gene99501:intron | 45.0% | |
| CATGAGTTTGCAACCCGATT+GGG | - | chr7.1:32223820-32223839 | MS.gene99501:intron | 45.0% | |
| CCGTATCTGAACACCTATGA+TGG | - | chr7.1:32223583-32223602 | MS.gene99501:intron | 45.0% | |
| CTGTTCAGTTTGGGCAGAAA+GGG | - | chr7.1:32223557-32223576 | MS.gene99501:intron | 45.0% | |
| CTTCATCATCCCTTACAGAG+TGG | + | chr7.1:32223370-32223389 | None:intergenic | 45.0% | |
| GATTTGTGTGGTCCAGATGA+CGG | + | chr7.1:32222935-32222954 | None:intergenic | 45.0% | |
| GGCATTAGGCCTAAATTGCA+CGG | - | chr7.1:32223109-32223128 | MS.gene99501:intron | 45.0% | |
| GGCTCAATGCTCCAAAACAT+TGG | - | chr7.1:32222782-32222801 | MS.gene99501:intron | 45.0% | |
| GGGAATGTTGTTATGGTGAC+TGG | - | chr7.1:32223706-32223725 | MS.gene99501:intron | 45.0% | |
| TCATGAGTTTGCAACCCGAT+TGG | - | chr7.1:32223819-32223838 | MS.gene99501:intron | 45.0% | |
| TCTCGTGTATTTCAGGCAAG+AGG | - | chr7.1:32222739-32222758 | MS.gene99501:intron | 45.0% | |
| TCTGTTCAGTTTGGGCAGAA+AGG | - | chr7.1:32223556-32223575 | MS.gene99501:intron | 45.0% | |
| TGGATGCTTGATAAGCTTGG+CGG | - | chr7.1:32222802-32222821 | MS.gene99501:intron | 45.0% | |
| TTGTTATGGTGACTGGAGGA+AGG | - | chr7.1:32223713-32223732 | MS.gene99501:intron | 45.0% | |
| !! | GTGTTGGTGTCATCAAGAAC+AGG | - | chr7.1:32223746-32223765 | MS.gene99501:intron | 45.0% |
| !! | TTGGCCTTAATAAGGGGATC+AGG | + | chr7.1:32223625-32223644 | None:intergenic | 45.0% |
| !!! | CCTGCTGGTTTTATGGGTAT+GGG | - | chr7.1:32223088-32223107 | MS.gene99501:intron | 45.0% |
| !!! | TCCTGCTGGTTTTATGGGTA+TGG | - | chr7.1:32223087-32223106 | MS.gene99501:intron | 45.0% |
| AACATGGCGCTGCATCAAGA+TGG | + | chr7.1:32223032-32223051 | None:intergenic | 50.0% | |
| ACTCATGACCAGTAGCATCC+TGG | + | chr7.1:32223807-32223826 | None:intergenic | 50.0% | |
| CATCCCTTACAGAGTGGAGA+CGG | + | chr7.1:32223364-32223383 | None:intergenic | 50.0% | |
| CCCATACCCATAAAACCAGC+AGG | + | chr7.1:32223091-32223110 | None:intergenic | 50.0% | |
| GATTCCGTCTCCACTCTGTA+AGG | - | chr7.1:32223357-32223376 | MS.gene99501:intron | 50.0% | |
| TCATTGAGGAGGCAAGGAAG+CGG | - | chr7.1:32223917-32223936 | MS.gene99501:intron | 50.0% | |
| TGACAGTCATTGAGGAGGCA+AGG | - | chr7.1:32223911-32223930 | MS.gene99501:intron | 50.0% | |
| TGCAAAAGGTTGGAGAGGGA+GGG | + | chr7.1:32223514-32223533 | None:intergenic | 50.0% | |
| TGGCAAAGGGTCGAAACCTT+GGG | - | chr7.1:32223858-32223877 | MS.gene99501:intron | 50.0% | |
| TTGGCAAAGGGTCGAAACCT+TGG | - | chr7.1:32223857-32223876 | MS.gene99501:intron | 50.0% | |
| ! | CAGCGCCATGTTCTAGTTGA+TGG | - | chr7.1:32223040-32223059 | MS.gene99501:intron | 50.0% |
| !! | AGGCACTCCCTTGATTTGTG+TGG | + | chr7.1:32222947-32222966 | None:intergenic | 50.0% |
| AGCTTGGCGGTGCCTTTGTA+TGG | - | chr7.1:32222815-32222834 | MS.gene99501:intron | 55.0% | |
| CCTTGGGTGTCTCTTCCCAA+AGG | - | chr7.1:32223874-32223893 | MS.gene99501:intron | 55.0% | |
| CTGCAAAAGGTTGGAGAGGG+AGG | + | chr7.1:32223515-32223534 | None:intergenic | 55.0% | |
| GATGGCTGCTTCTCAACAGG+TGG | - | chr7.1:32223939-32223958 | MS.gene99501:intron | 55.0% | |
| GGTGACTGGAGGAAGGAACA+GGG | - | chr7.1:32223720-32223739 | MS.gene99501:intron | 55.0% | |
| GTGACTGGAGGAAGGAACAG+GGG | - | chr7.1:32223721-32223740 | MS.gene99501:intron | 55.0% | |
| GTGTCTCTTCCCAAAGGCAG+AGG | - | chr7.1:32223880-32223899 | MS.gene99501:intron | 55.0% | |
| TGGTGACTGGAGGAAGGAAC+AGG | - | chr7.1:32223719-32223738 | MS.gene99501:intron | 55.0% | |
| ! | CCTTTGGGAAGAGACACCCA+AGG | + | chr7.1:32223877-32223896 | None:intergenic | 55.0% |
| ! | GCGGATTGTACGCCCATCAT+AGG | + | chr7.1:32223599-32223618 | None:intergenic | 55.0% |
| ! | GTGGTCCAGATGACGGCTTT+GGG | + | chr7.1:32222928-32222947 | None:intergenic | 55.0% |
| ! | TGGTCCAGATGACGGCTTTG+GGG | + | chr7.1:32222927-32222946 | None:intergenic | 55.0% |
| ! | TGTGGTCCAGATGACGGCTT+TGG | + | chr7.1:32222929-32222948 | None:intergenic | 55.0% |
| GCGGATGGCTGCTTCTCAAC+AGG | - | chr7.1:32223936-32223955 | MS.gene99501:intron | 60.0% | |
| GGAAGGAACAGGGGTCGTGT+TGG | - | chr7.1:32223730-32223749 | MS.gene99501:intron | 60.0% | |
| TGAGGAGGCAAGGAAGCGGA+TGG | - | chr7.1:32223921-32223940 | MS.gene99501:intron | 60.0% | |
| CAGGCCCCAAAGCCGTCATC+TGG | - | chr7.1:32222920-32222939 | MS.gene99501:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 32221463 | 32223972 | 32221463 | ID=MS.gene99501 |
| chr7.1 | mRNA | 32221463 | 32223972 | 32221463 | ID=MS.gene99501.t1;Parent=MS.gene99501 |
| chr7.1 | exon | 32223970 | 32223972 | 32223970 | ID=MS.gene99501.t1.exon1;Parent=MS.gene99501.t1 |
| chr7.1 | CDS | 32223970 | 32223972 | 32223970 | ID=cds.MS.gene99501.t1;Parent=MS.gene99501.t1 |
| chr7.1 | exon | 32222604 | 32222681 | 32222604 | ID=MS.gene99501.t1.exon2;Parent=MS.gene99501.t1 |
| chr7.1 | CDS | 32222604 | 32222681 | 32222604 | ID=cds.MS.gene99501.t1;Parent=MS.gene99501.t1 |
| chr7.1 | exon | 32222332 | 32222512 | 32222332 | ID=MS.gene99501.t1.exon3;Parent=MS.gene99501.t1 |
| chr7.1 | CDS | 32222332 | 32222512 | 32222332 | ID=cds.MS.gene99501.t1;Parent=MS.gene99501.t1 |
| chr7.1 | exon | 32222041 | 32222138 | 32222041 | ID=MS.gene99501.t1.exon4;Parent=MS.gene99501.t1 |
| chr7.1 | CDS | 32222041 | 32222138 | 32222041 | ID=cds.MS.gene99501.t1;Parent=MS.gene99501.t1 |
| chr7.1 | exon | 32221463 | 32221900 | 32221463 | ID=MS.gene99501.t1.exon5;Parent=MS.gene99501.t1 |
| chr7.1 | CDS | 32221463 | 32221900 | 32221463 | ID=cds.MS.gene99501.t1;Parent=MS.gene99501.t1 |
| Gene Sequence |
| Protein sequence |
