Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041181.t1 | XP_003611879.1 | 100 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 9.60E-148 | 532.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041181.t1 | P49204 | 90.5 | 262 | 25 | 0 | 1 | 262 | 1 | 262 | 6.3e-140 | 498.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041181.t1 | B7FL29 | 100.0 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 6.9e-148 | 532.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene27648 | MS.gene041181 | PPI |
| MS.gene041181 | MS.gene38870 | PPI |
| MS.gene041181 | MS.gene82426 | PPI |
| MS.gene069005 | MS.gene041181 | PPI |
| MS.gene59369 | MS.gene041181 | PPI |
| MS.gene041181 | MS.gene032440 | PPI |
| MS.gene041181 | MS.gene053443 | PPI |
| MS.gene041181 | MS.gene83444 | PPI |
| MS.gene041181 | MS.gene071029 | PPI |
| MS.gene74487 | MS.gene041181 | PPI |
| MS.gene047717 | MS.gene041181 | PPI |
| MS.gene041181 | MS.gene073888 | PPI |
| MS.gene028153 | MS.gene041181 | PPI |
| MS.gene42236 | MS.gene041181 | PPI |
| MS.gene041181 | MS.gene023799 | PPI |
| MS.gene041181 | MS.gene52173 | PPI |
| MS.gene041181 | MS.gene72768 | PPI |
| MS.gene041181 | MS.gene010439 | PPI |
| MS.gene53517 | MS.gene041181 | PPI |
| MS.gene43012 | MS.gene041181 | PPI |
| MS.gene041181 | MS.gene99501 | PPI |
| MS.gene95672 | MS.gene041181 | PPI |
| MS.gene041181 | MS.gene035447 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041181.t1 | MTR_5g018940 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
| MS.gene041181.t1 | MTR_5g018940 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
| MS.gene041181.t1 | MTR_8g052030 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
| MS.gene041181.t1 | MTR_4g014590 | 95.094 | 265 | 12 | 1 | 1 | 265 | 1 | 264 | 0.0 | 518 |
| MS.gene041181.t1 | MTR_7g069950 | 94.510 | 255 | 14 | 0 | 1 | 255 | 1 | 255 | 0.0 | 501 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene041181.t1 | AT5G07090 | 90.458 | 262 | 25 | 0 | 1 | 262 | 1 | 262 | 0.0 | 506 |
| MS.gene041181.t1 | AT2G17360 | 90.769 | 260 | 24 | 0 | 1 | 260 | 1 | 260 | 0.0 | 504 |
| MS.gene041181.t1 | AT5G58420 | 90.076 | 262 | 26 | 0 | 1 | 262 | 1 | 262 | 0.0 | 503 |
| MS.gene041181.t1 | AT5G07090 | 89.754 | 244 | 25 | 0 | 19 | 262 | 1 | 244 | 2.41e-169 | 468 |
| MS.gene041181.t1 | AT5G07090 | 89.754 | 244 | 25 | 0 | 19 | 262 | 1 | 244 | 2.41e-169 | 468 |
| MS.gene041181.t1 | AT2G17360 | 91.160 | 181 | 16 | 0 | 1 | 181 | 1 | 181 | 2.61e-125 | 354 |
Find 87 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGAAAGCTCTCATTTGTCTT+AGG | 0.174170 | 5.1:+10895005 | None:intergenic |
| GCATTGGATGCTTGACAAAT+TGG | 0.267158 | 5.1:-10895755 | MS.gene041181:CDS |
| TGTGGTCCTGAGGAGGGTTT+AGG | 0.299807 | 5.1:+10895629 | None:intergenic |
| TTAGCCCTGATGACGGGGTC+TGG | 0.336130 | 5.1:+10894249 | None:intergenic |
| AGGTTCGTTCAGTGCAATTT+GGG | 0.356395 | 5.1:-10894323 | MS.gene041181:CDS |
| GCTACCCAGACCCCGTCATC+AGG | 0.361624 | 5.1:-10894254 | MS.gene041181:CDS |
| AAGGTTCGTTCAGTGCAATT+TGG | 0.362570 | 5.1:-10894324 | MS.gene041181:CDS |
| GGTTACTGGTGGTAAGAATA+GGG | 0.368167 | 5.1:-10894151 | MS.gene041181:CDS |
| TGCGACCATCATAGGTGTTC+AGG | 0.372486 | 5.1:+10894283 | None:intergenic |
| GAAAGCTCTCATTTGTCTTA+GGG | 0.386255 | 5.1:+10895006 | None:intergenic |
| ATTTCATCAAATTCGATGTT+GGG | 0.389801 | 5.1:-10894185 | MS.gene041181:CDS |
| GACTTATCCAGCTGGATTCA+TGG | 0.391447 | 5.1:-10895474 | MS.gene041181:CDS |
| TGGTTACTGGTGGTAAGAAT+AGG | 0.421034 | 5.1:-10894152 | MS.gene041181:CDS |
| GCGGATAGTGCGACCATCAT+AGG | 0.423659 | 5.1:+10894275 | None:intergenic |
| CCATCATAGGTGTTCAGGTA+TGG | 0.424936 | 5.1:+10894288 | None:intergenic |
| GGGAATGTAGTGATGGTTAC+TGG | 0.426127 | 5.1:-10894165 | MS.gene041181:CDS |
| CTGGTCAATGTGTTCACTAT+TGG | 0.427005 | 5.1:-10894033 | MS.gene041181:CDS |
| GATTTCATCAAATTCGATGT+TGG | 0.427275 | 5.1:-10894186 | MS.gene041181:CDS |
| TAATTTAATACCCTTACCCT+TGG | 0.430283 | 5.1:+10893981 | None:intergenic |
| CTTTGAGACAATCCACGTTC+AGG | 0.430746 | 5.1:-10894085 | MS.gene041181:CDS |
| TTTGTCAAGCATCCAATGCT+TGG | 0.431928 | 5.1:+10895759 | None:intergenic |
| TCCTTGTTGACGGCAAAGTC+AGG | 0.447044 | 5.1:-10895505 | MS.gene041181:CDS |
| CCTCATCATCTCTGACTGAA+TGG | 0.453638 | 5.1:+10894949 | None:intergenic |
| CCTCAGGACCACACAAGTCT+AGG | 0.454833 | 5.1:-10895619 | MS.gene041181:CDS |
| CATTGGATGCTTGACAAATT+GGG | 0.462746 | 5.1:-10895754 | MS.gene041181:CDS |
| CAACGACATGTCCTTGTTGA+CGG | 0.463122 | 5.1:-10895515 | MS.gene041181:CDS |
| TCATGAGTTTGCAACTCGTC+TGG | 0.463499 | 5.1:-10894052 | MS.gene041181:CDS |
| TTGTCAAGCATCCAATGCTT+GGG | 0.467712 | 5.1:+10895760 | None:intergenic |
| GTGTCATTAGCCCTGATGAC+GGG | 0.468677 | 5.1:+10894243 | None:intergenic |
| TAGCCCTGATGACGGGGTCT+GGG | 0.470117 | 5.1:+10894250 | None:intergenic |
| TGATGACGGGGTCTGGGTAG+CGG | 0.470305 | 5.1:+10894256 | None:intergenic |
| ATGGAGACGGAAACGGCCTT+TGG | 0.474465 | 5.1:+10894968 | None:intergenic |
| TCAGAATAGCAATGACTTCA+CGG | 0.477884 | 5.1:+10895540 | None:intergenic |
| GGCTCAATGCTCCCAAGCAT+TGG | 0.482000 | 5.1:-10895771 | MS.gene041181:CDS |
| GGTATCTCTTCCCAAGGGTA+AGG | 0.487613 | 5.1:-10893992 | MS.gene041181:CDS |
| CATCATAGGTGTTCAGGTAT+GGG | 0.488276 | 5.1:+10894289 | None:intergenic |
| GACTTGTGTGGTCCTGAGGA+GGG | 0.506962 | 5.1:+10895623 | None:intergenic |
| ACTTATCCAGCTGGATTCAT+GGG | 0.514100 | 5.1:-10895473 | MS.gene041181:intron |
| AATTTAATACCCTTACCCTT+GGG | 0.520640 | 5.1:+10893982 | None:intergenic |
| TTCATACCCATGAATCCAGC+TGG | 0.521349 | 5.1:+10895467 | None:intergenic |
| CCATACCTGAACACCTATGA+TGG | 0.522589 | 5.1:-10894288 | MS.gene041181:CDS |
| TAACCGTCATTGAGGAAGCT+AGG | 0.523856 | 5.1:-10893960 | MS.gene041181:CDS |
| CCTAGACTTGTGTGGTCCTG+AGG | 0.529340 | 5.1:+10895619 | None:intergenic |
| CTGAACGTGGATTGTCTCAA+AGG | 0.529462 | 5.1:+10894086 | None:intergenic |
| CTCAGGACCACACAAGTCTA+GGG | 0.530312 | 5.1:-10895618 | MS.gene041181:CDS |
| AGACTTGTGTGGTCCTGAGG+AGG | 0.538843 | 5.1:+10895622 | None:intergenic |
| TTGGCAAGGGGACAAAGCCA+TGG | 0.543228 | 5.1:-10894014 | MS.gene041181:CDS |
| TCAGTGCAATTTGGGCAGAA+AGG | 0.544106 | 5.1:-10894315 | MS.gene041181:CDS |
| GGCTAATGACACAATCAAGC+TGG | 0.549219 | 5.1:-10894232 | MS.gene041181:CDS |
| CAATGTGTTCACTATTGGCA+AGG | 0.556225 | 5.1:-10894028 | MS.gene041181:CDS |
| TATTAAATTAACCGTCATTG+AGG | 0.559320 | 5.1:-10893968 | MS.gene041181:CDS |
| TAGGCTCCTAAACCCTCCTC+AGG | 0.560132 | 5.1:-10895635 | MS.gene041181:CDS |
| CTTCCTAGCTTCCTCAATGA+CGG | 0.562602 | 5.1:+10893957 | None:intergenic |
| TCATTGAGGAAGCTAGGAAG+AGG | 0.575342 | 5.1:-10893954 | MS.gene041181:CDS |
| GCCATGGGTATCTCTTCCCA+AGG | 0.583131 | 5.1:-10893998 | MS.gene041181:CDS |
| TGACTGAATGGAGACGGAAA+CGG | 0.588177 | 5.1:+10894961 | None:intergenic |
| CATCTCTGACTGAATGGAGA+CGG | 0.590006 | 5.1:+10894955 | None:intergenic |
| GTTTGAAGAAGCATTTGAAG+AGG | 0.590332 | 5.1:-10895792 | MS.gene041181:CDS |
| AGTCAGAGATGATGAGGCAA+AGG | 0.591111 | 5.1:-10894943 | MS.gene041181:intron |
| CCATTCAGTCAGAGATGATG+AGG | 0.595121 | 5.1:-10894949 | MS.gene041181:CDS |
| CACAATCAAGCTGGACCTTG+AGG | 0.598303 | 5.1:-10894223 | MS.gene041181:CDS |
| GTATCTCTTCCCAAGGGTAA+GGG | 0.600286 | 5.1:-10893991 | MS.gene041181:CDS |
| AATGTGTTCACTATTGGCAA+GGG | 0.602196 | 5.1:-10894027 | MS.gene041181:CDS |
| TCCTGACTTTGCCGTCAACA+AGG | 0.608758 | 5.1:+10895504 | None:intergenic |
| CTACCCAGACCCCGTCATCA+GGG | 0.613237 | 5.1:-10894253 | MS.gene041181:CDS |
| CGATGTTGGGAATGTAGTGA+TGG | 0.614516 | 5.1:-10894172 | MS.gene041181:CDS |
| TTGTGAATGTTACAGGCGAG+AGG | 0.619063 | 5.1:-10895814 | MS.gene041181:intron |
| TTTCGCAAGATCAGAATGAG+TGG | 0.619970 | 5.1:+10895587 | None:intergenic |
| ACTGACAAGACTTATCCAGC+TGG | 0.621794 | 5.1:-10895482 | MS.gene041181:CDS |
| ATGGTAGTTCAAGCTGTGCA+AGG | 0.622446 | 5.1:-10894343 | MS.gene041181:intron |
| TGGCAAGGGGACAAAGCCAT+GGG | 0.628119 | 5.1:-10894013 | MS.gene041181:CDS |
| TGTCATTAGCCCTGATGACG+GGG | 0.633241 | 5.1:+10894244 | None:intergenic |
| TTCGCAAGATCAGAATGAGT+GGG | 0.633304 | 5.1:+10895588 | None:intergenic |
| TGTGTCATTAGCCCTGATGA+CGG | 0.635671 | 5.1:+10894242 | None:intergenic |
| ATCCACGTTCAGGATGCCAC+AGG | 0.641045 | 5.1:-10894075 | MS.gene041181:CDS |
| GTTACTGGTGGTAAGAATAG+GGG | 0.641635 | 5.1:-10894150 | MS.gene041181:CDS |
| AGACATTCCCTAGACTTGTG+TGG | 0.650622 | 5.1:+10895611 | None:intergenic |
| CCCTTGGGAAGAGATACCCA+TGG | 0.652851 | 5.1:+10893997 | None:intergenic |
| CATTGAGGAAGCTAGGAAGA+GGG | 0.661297 | 5.1:-10893953 | MS.gene041181:CDS |
| GACCTGTGGCATCCTGAACG+TGG | 0.664577 | 5.1:+10894073 | None:intergenic |
| ATGTGTTCACTATTGGCAAG+GGG | 0.666865 | 5.1:-10894026 | MS.gene041181:CDS |
| CCATGGGTATCTCTTCCCAA+GGG | 0.685421 | 5.1:-10893997 | MS.gene041181:CDS |
| TGGATGCTTGACAAATTGGG+TGG | 0.687057 | 5.1:-10895751 | MS.gene041181:CDS |
| TTACTGGTGGTAAGAATAGG+GGG | 0.688676 | 5.1:-10894149 | MS.gene041181:CDS |
| AGTTGCAAACTCATGACCTG+TGG | 0.695037 | 5.1:+10894059 | None:intergenic |
| CGTCTGCTGTATGACACCAA+AGG | 0.695045 | 5.1:-10894984 | MS.gene041181:CDS |
| AATGTAGTGATGGTTACTGG+TGG | 0.759462 | 5.1:-10894162 | MS.gene041181:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTATTTATTTTTTAATCTA+AGG | - | chr5.1:10894785-10894804 | MS.gene041181:intron | 10.0% |
| !!! | TTTTTTAAAATATTTGTATC+TGG | - | chr5.1:10895423-10895442 | MS.gene041181:intron | 10.0% |
| !! | AATTATCTTATACCAAATAA+AGG | + | chr5.1:10894619-10894638 | None:intergenic | 15.0% |
| !! | ATATTATAATTAACATGTGA+TGG | - | chr5.1:10895777-10895796 | MS.gene041181:CDS | 15.0% |
| !!! | AATTTTTGTGTGAAATTTAT+AGG | - | chr5.1:10894815-10894834 | MS.gene041181:intron | 15.0% |
| !!! | ATAAGATAATTTTTGAACTT+GGG | - | chr5.1:10894628-10894647 | MS.gene041181:intron | 15.0% |
| !!! | ATATTTTAAAAAACACAATC+AGG | + | chr5.1:10895416-10895435 | None:intergenic | 15.0% |
| !!! | GTTATTTGATTTATGATATT+AGG | - | chr5.1:10894136-10894155 | MS.gene041181:CDS | 15.0% |
| !!! | TATAAGATAATTTTTGAACT+TGG | - | chr5.1:10894627-10894646 | MS.gene041181:intron | 15.0% |
| !!! | TTTATCATGATTTATTTTCT+GGG | - | chr5.1:10894076-10894095 | MS.gene041181:CDS | 15.0% |
| !!! | TTTTTCATATGCTAAAAAAT+AGG | - | chr5.1:10894444-10894463 | MS.gene041181:intron | 15.0% |
| !!! | TTTTTTAGCATATGAAAAAT+AGG | + | chr5.1:10894443-10894462 | None:intergenic | 15.0% |
| !! | AAAAGAAAATGAAAACATTG+AGG | + | chr5.1:10893957-10893976 | None:intergenic | 20.0% |
| !! | AAAGAAAATGAAAACATTGA+GGG | + | chr5.1:10893956-10893975 | None:intergenic | 20.0% |
| !! | AAATACAATCTATTGTAACA+TGG | + | chr5.1:10895269-10895288 | None:intergenic | 20.0% |
| !! | AATTGAAATATGATAGAACT+TGG | + | chr5.1:10894759-10894778 | None:intergenic | 20.0% |
| !! | ATGTTACAATAGATTGTATT+TGG | - | chr5.1:10895268-10895287 | MS.gene041181:intron | 20.0% |
| !! | ATTCTATGAATCATTTGATT+TGG | - | chr5.1:10895384-10895403 | MS.gene041181:intron | 20.0% |
| !! | GACAATAATAATTGAATACA+AGG | - | chr5.1:10895200-10895219 | MS.gene041181:intron | 20.0% |
| !! | TATCATAAATCAAATAACAC+AGG | + | chr5.1:10894134-10894153 | None:intergenic | 20.0% |
| !! | TCTAATCATCAAAATAAACT+AGG | + | chr5.1:10894173-10894192 | None:intergenic | 20.0% |
| !!! | CTTTATCATGATTTATTTTC+TGG | - | chr5.1:10894075-10894094 | MS.gene041181:CDS | 20.0% |
| !!! | TATTATTCATAAGCTTGTTA+AGG | - | chr5.1:10894337-10894356 | MS.gene041181:CDS | 20.0% |
| !!! | TTGAATTTTGATCCTTTATT+TGG | - | chr5.1:10894604-10894623 | MS.gene041181:intron | 20.0% |
| ! | AAAAAATAGGTCAATCCAAA+CGG | - | chr5.1:10894457-10894476 | MS.gene041181:intron | 25.0% |
| ! | AAGAACAGAGAAAAACATAA+GGG | - | chr5.1:10896358-10896377 | MS.gene041181:intron | 25.0% |
| ! | AGAGATCAGTAATCAAATAA+AGG | + | chr5.1:10895554-10895573 | None:intergenic | 25.0% |
| ! | AGATATATGTTATGTGTTCA+TGG | - | chr5.1:10895855-10895874 | MS.gene041181:intron | 25.0% |
| ! | ATGATTAGATCCCTTAATTT+AGG | - | chr5.1:10894184-10894203 | MS.gene041181:CDS | 25.0% |
| ! | ATTTCATCAAATTCGATGTT+GGG | - | chr5.1:10896284-10896303 | MS.gene041181:intron | 25.0% |
| ! | CGGAATAAATTAAAAGATCA+TGG | + | chr5.1:10895580-10895599 | None:intergenic | 25.0% |
| ! | TATTAAATTAACCGTCATTG+AGG | - | chr5.1:10896501-10896520 | MS.gene041181:intron | 25.0% |
| ! | TCATCAAAATAAACTAGGAA+TGG | + | chr5.1:10894168-10894187 | None:intergenic | 25.0% |
| ! | TGATTAGATCCCTTAATTTA+GGG | - | chr5.1:10894185-10894204 | MS.gene041181:CDS | 25.0% |
| ! | TGTTCAAAAACACTACATAA+AGG | + | chr5.1:10894562-10894581 | None:intergenic | 25.0% |
| ! | TTAGTATAATTAACACGTGA+TGG | - | chr5.1:10895984-10896003 | MS.gene041181:intron | 25.0% |
| !! | AAGTTACAATTTTTGTCAGT+GGG | - | chr5.1:10894384-10894403 | MS.gene041181:intron | 25.0% |
| !!! | CGAAAATTTATTTCGAGTTT+AGG | - | chr5.1:10894106-10894125 | MS.gene041181:CDS | 25.0% |
| !!! | GATCTTTTAATTTATTCCGT+AGG | - | chr5.1:10895581-10895600 | MS.gene041181:CDS | 25.0% |
| !!! | GTTTTATCTGAAGTTAAAAG+TGG | - | chr5.1:10895222-10895241 | MS.gene041181:intron | 25.0% |
| AAAAATAGGTCAATCCAAAC+GGG | - | chr5.1:10894458-10894477 | MS.gene041181:intron | 30.0% | |
| AAAATGAAAACATTGAGGGA+GGG | + | chr5.1:10893952-10893971 | None:intergenic | 30.0% | |
| AATTTAATACCCTTACCCTT+GGG | + | chr5.1:10896490-10896509 | None:intergenic | 30.0% | |
| ATGGTGTAATTAACATGTGA+TGG | - | chr5.1:10895874-10895893 | MS.gene041181:intron | 30.0% | |
| ATTCATAGAATTCTTTCACG+AGG | + | chr5.1:10895375-10895394 | None:intergenic | 30.0% | |
| CAAGAACAGAGAAAAACATA+AGG | - | chr5.1:10896357-10896376 | MS.gene041181:intron | 30.0% | |
| GATTTCATCAAATTCGATGT+TGG | - | chr5.1:10896283-10896302 | MS.gene041181:intron | 30.0% | |
| TAAATAAGCCGATCCAAATA+TGG | - | chr5.1:10894240-10894259 | MS.gene041181:CDS | 30.0% | |
| TAATTTAATACCCTTACCCT+TGG | + | chr5.1:10896491-10896510 | None:intergenic | 30.0% | |
| TCAATCAAGCCCTAAATTAA+GGG | + | chr5.1:10894197-10894216 | None:intergenic | 30.0% | |
| TGATGTATTATAGCAGAGTA+TGG | - | chr5.1:10895151-10895170 | MS.gene041181:intron | 30.0% | |
| TTCAATCAAGCCCTAAATTA+AGG | + | chr5.1:10894198-10894217 | None:intergenic | 30.0% | |
| TTTCGTGTATGTGATATACA+TGG | - | chr5.1:10896107-10896126 | MS.gene041181:intron | 30.0% | |
| ! | ATTTGGCATGTTTTCATTAC+TGG | - | chr5.1:10895285-10895304 | MS.gene041181:intron | 30.0% |
| ! | GAAGTTACAATTTTTGTCAG+TGG | - | chr5.1:10894383-10894402 | MS.gene041181:intron | 30.0% |
| AATGTGTTCACTATTGGCAA+GGG | - | chr5.1:10896442-10896461 | MS.gene041181:intron | 35.0% | |
| ATTCCGTAGGATACTTTGAA+TGG | - | chr5.1:10895594-10895613 | MS.gene041181:CDS | 35.0% | |
| CATTGGATGCTTGACAAATT+GGG | - | chr5.1:10894715-10894734 | MS.gene041181:intron | 35.0% | |
| CCCTTAAACCATATTTGGAT+CGG | + | chr5.1:10894251-10894270 | None:intergenic | 35.0% | |
| CCGATCCAAATATGGTTTAA+GGG | - | chr5.1:10894248-10894267 | MS.gene041181:CDS | 35.0% | |
| CGATCCAAATATGGTTTAAG+GGG | - | chr5.1:10894249-10894268 | MS.gene041181:CDS | 35.0% | |
| GAAAATGAAAACATTGAGGG+AGG | + | chr5.1:10893953-10893972 | None:intergenic | 35.0% | |
| GAAAGCTCTCATTTGTCTTA+GGG | + | chr5.1:10895466-10895485 | None:intergenic | 35.0% | |
| GTATTATAGCAGAGTATGGT+AGG | - | chr5.1:10895155-10895174 | MS.gene041181:intron | 35.0% | |
| GTGTAATTAAATAAGCTGCC+TGG | - | chr5.1:10895339-10895358 | MS.gene041181:intron | 35.0% | |
| TCAGAATAGCAATGACTTCA+CGG | + | chr5.1:10894932-10894951 | None:intergenic | 35.0% | |
| TTTGGACAATCAACATGCTT+TGG | - | chr5.1:10895063-10895082 | MS.gene041181:intron | 35.0% | |
| ! | AAGCCATTCAAAGTATCCTA+CGG | + | chr5.1:10895600-10895619 | None:intergenic | 35.0% |
| ! | GTGATGGCTTTTACTTTGAA+TGG | - | chr5.1:10896000-10896019 | MS.gene041181:intron | 35.0% |
| !! | GTGATGGTTGTTACTTTGTA+TGG | - | chr5.1:10895793-10895812 | MS.gene041181:CDS | 35.0% |
| !! | GTTTGAAGAAGCATTTGAAG+AGG | - | chr5.1:10894677-10894696 | MS.gene041181:intron | 35.0% |
| !! | TGAATCATTTGATTTGGCTG+TGG | - | chr5.1:10895390-10895409 | MS.gene041181:intron | 35.0% |
| !!! | CAACAATCTTGTTTTCCTCA+AGG | + | chr5.1:10896264-10896283 | None:intergenic | 35.0% |
| AAGGTTCGTTCAGTGCAATT+TGG | - | chr5.1:10896145-10896164 | MS.gene041181:intron | 40.0% | |
| AATGTAGTGATGGTTACTGG+TGG | - | chr5.1:10896307-10896326 | MS.gene041181:intron | 40.0% | |
| ACAAAAACTAAGCACCCGTT+TGG | + | chr5.1:10894475-10894494 | None:intergenic | 40.0% | |
| ACAGCCCCTTAAACCATATT+TGG | + | chr5.1:10894256-10894275 | None:intergenic | 40.0% | |
| ACTTATCCAGCTGGATTCAT+GGG | - | chr5.1:10894996-10895015 | MS.gene041181:CDS | 40.0% | |
| AGCAGAGTATGGTAGGTTAA+AGG | - | chr5.1:10895162-10895181 | MS.gene041181:intron | 40.0% | |
| AGGTTCGTTCAGTGCAATTT+GGG | - | chr5.1:10896146-10896165 | MS.gene041181:intron | 40.0% | |
| ATATGGTTTAAGGGGCTGTT+TGG | - | chr5.1:10894257-10894276 | MS.gene041181:CDS | 40.0% | |
| ATGTGTTCACTATTGGCAAG+GGG | - | chr5.1:10896443-10896462 | MS.gene041181:intron | 40.0% | |
| CAATGTGTTCACTATTGGCA+AGG | - | chr5.1:10896441-10896460 | MS.gene041181:intron | 40.0% | |
| CATCATAGGTGTTCAGGTAT+GGG | + | chr5.1:10896183-10896202 | None:intergenic | 40.0% | |
| CGAAAGCTCTCATTTGTCTT+AGG | + | chr5.1:10895467-10895486 | None:intergenic | 40.0% | |
| CTGGTCAATGTGTTCACTAT+TGG | - | chr5.1:10896436-10896455 | MS.gene041181:intron | 40.0% | |
| GCATTGGATGCTTGACAAAT+TGG | - | chr5.1:10894714-10894733 | MS.gene041181:intron | 40.0% | |
| GCCGATCCAAATATGGTTTA+AGG | - | chr5.1:10894247-10894266 | MS.gene041181:CDS | 40.0% | |
| GGGATGTTTGTGAATGTTAC+AGG | - | chr5.1:10894648-10894667 | MS.gene041181:intron | 40.0% | |
| GGTTACTGGTGGTAAGAATA+GGG | - | chr5.1:10896318-10896337 | MS.gene041181:intron | 40.0% | |
| GTGATAGCTGTTACTGTGAA+TGG | - | chr5.1:10895698-10895717 | MS.gene041181:intron | 40.0% | |
| GTTACTGGTGGTAAGAATAG+GGG | - | chr5.1:10896319-10896338 | MS.gene041181:intron | 40.0% | |
| TGGTTACTGGTGGTAAGAAT+AGG | - | chr5.1:10896317-10896336 | MS.gene041181:intron | 40.0% | |
| TTACTGGTGGTAAGAATAGG+GGG | - | chr5.1:10896320-10896339 | MS.gene041181:intron | 40.0% | |
| TTCGCAAGATCAGAATGAGT+GGG | + | chr5.1:10894884-10894903 | None:intergenic | 40.0% | |
| TTGTCAAGCATCCAATGCTT+GGG | + | chr5.1:10894712-10894731 | None:intergenic | 40.0% | |
| TTTCGCAAGATCAGAATGAG+TGG | + | chr5.1:10894885-10894904 | None:intergenic | 40.0% | |
| TTTGTCAAGCATCCAATGCT+TGG | + | chr5.1:10894713-10894732 | None:intergenic | 40.0% | |
| ! | TAAATAAGCTGCCTGGTCTT+TGG | - | chr5.1:10895346-10895365 | MS.gene041181:intron | 40.0% |
| ACTGACAAGACTTATCCAGC+TGG | - | chr5.1:10894987-10895006 | MS.gene041181:CDS | 45.0% | |
| AGACATTCCCTAGACTTGTG+TGG | + | chr5.1:10894861-10894880 | None:intergenic | 45.0% | |
| AGTCAGAGATGATGAGGCAA+AGG | - | chr5.1:10895526-10895545 | MS.gene041181:CDS | 45.0% | |
| AGTTGCAAACTCATGACCTG+TGG | + | chr5.1:10896413-10896432 | None:intergenic | 45.0% | |
| ATGGTAGTTCAAGCTGTGCA+AGG | - | chr5.1:10896126-10896145 | MS.gene041181:intron | 45.0% | |
| CAACGACATGTCCTTGTTGA+CGG | - | chr5.1:10894954-10894973 | MS.gene041181:CDS | 45.0% | |
| CATCTCTGACTGAATGGAGA+CGG | + | chr5.1:10895517-10895536 | None:intergenic | 45.0% | |
| CATTGAGGAAGCTAGGAAGA+GGG | - | chr5.1:10896516-10896535 | MS.gene041181:intron | 45.0% | |
| CCATACCTGAACACCTATGA+TGG | - | chr5.1:10896181-10896200 | MS.gene041181:intron | 45.0% | |
| CCATCATAGGTGTTCAGGTA+TGG | + | chr5.1:10896184-10896203 | None:intergenic | 45.0% | |
| CCATTCAGTCAGAGATGATG+AGG | - | chr5.1:10895520-10895539 | MS.gene041181:CDS | 45.0% | |
| CCTCATCATCTCTGACTGAA+TGG | + | chr5.1:10895523-10895542 | None:intergenic | 45.0% | |
| CGATGTTGGGAATGTAGTGA+TGG | - | chr5.1:10896297-10896316 | MS.gene041181:intron | 45.0% | |
| CTTCCTAGCTTCCTCAATGA+CGG | + | chr5.1:10896515-10896534 | None:intergenic | 45.0% | |
| GACTTATCCAGCTGGATTCA+TGG | - | chr5.1:10894995-10895014 | MS.gene041181:CDS | 45.0% | |
| GGCTAATGACACAATCAAGC+TGG | - | chr5.1:10896237-10896256 | MS.gene041181:intron | 45.0% | |
| GGGAATGTAGTGATGGTTAC+TGG | - | chr5.1:10896304-10896323 | MS.gene041181:intron | 45.0% | |
| GTATCTCTTCCCAAGGGTAA+GGG | - | chr5.1:10896478-10896497 | MS.gene041181:intron | 45.0% | |
| GTTTAAGGGGCTGTTTGGAT+TGG | - | chr5.1:10894262-10894281 | MS.gene041181:CDS | 45.0% | |
| TAACCGTCATTGAGGAAGCT+AGG | - | chr5.1:10896509-10896528 | MS.gene041181:intron | 45.0% | |
| TCAGTGCAATTTGGGCAGAA+AGG | - | chr5.1:10896154-10896173 | MS.gene041181:intron | 45.0% | |
| TCATGAGTTTGCAACTCGTC+TGG | - | chr5.1:10896417-10896436 | MS.gene041181:intron | 45.0% | |
| TCATTGAGGAAGCTAGGAAG+AGG | - | chr5.1:10896515-10896534 | MS.gene041181:intron | 45.0% | |
| TGACTGAATGGAGACGGAAA+CGG | + | chr5.1:10895511-10895530 | None:intergenic | 45.0% | |
| TGGATGCTTGACAAATTGGG+TGG | - | chr5.1:10894718-10894737 | MS.gene041181:intron | 45.0% | |
| TTCATACCCATGAATCCAGC+TGG | + | chr5.1:10895005-10895024 | None:intergenic | 45.0% | |
| TTGTGAATGTTACAGGCGAG+AGG | - | chr5.1:10894655-10894674 | MS.gene041181:intron | 45.0% | |
| ! | CTGAACGTGGATTGTCTCAA+AGG | + | chr5.1:10896386-10896405 | None:intergenic | 45.0% |
| ! | TGTGTCATTAGCCCTGATGA+CGG | + | chr5.1:10896230-10896249 | None:intergenic | 45.0% |
| !! | CTTTGAGACAATCCACGTTC+AGG | - | chr5.1:10896384-10896403 | MS.gene041181:intron | 45.0% |
| !!! | AATAATTGATTAATTTATTT+TGG | - | chr5.1:10895045-10895064 | MS.gene041181:intron | 5.0% |
| CACAATCAAGCTGGACCTTG+AGG | - | chr5.1:10896246-10896265 | MS.gene041181:intron | 50.0% | |
| CCATGGGTATCTCTTCCCAA+GGG | - | chr5.1:10896472-10896491 | MS.gene041181:intron | 50.0% | |
| CGTCTGCTGTATGACACCAA+AGG | - | chr5.1:10895485-10895504 | MS.gene041181:CDS | 50.0% | |
| CTCAGGACCACACAAGTCTA+GGG | - | chr5.1:10894851-10894870 | MS.gene041181:intron | 50.0% | |
| GGTATCTCTTCCCAAGGGTA+AGG | - | chr5.1:10896477-10896496 | MS.gene041181:intron | 50.0% | |
| TCACGAGGATTCCAAAGACC+AGG | + | chr5.1:10895360-10895379 | None:intergenic | 50.0% | |
| TCCTGACTTTGCCGTCAACA+AGG | + | chr5.1:10894968-10894987 | None:intergenic | 50.0% | |
| TCCTTGTTGACGGCAAAGTC+AGG | - | chr5.1:10894964-10894983 | MS.gene041181:CDS | 50.0% | |
| TGCGACCATCATAGGTGTTC+AGG | + | chr5.1:10896189-10896208 | None:intergenic | 50.0% | |
| ! | GTGTCATTAGCCCTGATGAC+GGG | + | chr5.1:10896229-10896248 | None:intergenic | 50.0% |
| ! | TGTCATTAGCCCTGATGACG+GGG | + | chr5.1:10896228-10896247 | None:intergenic | 50.0% |
| AGACTTGTGTGGTCCTGAGG+AGG | + | chr5.1:10894850-10894869 | None:intergenic | 55.0% | |
| ATCCACGTTCAGGATGCCAC+AGG | - | chr5.1:10896394-10896413 | MS.gene041181:intron | 55.0% | |
| ATGGAGACGGAAACGGCCTT+TGG | + | chr5.1:10895504-10895523 | None:intergenic | 55.0% | |
| CCCTTGGGAAGAGATACCCA+TGG | + | chr5.1:10896475-10896494 | None:intergenic | 55.0% | |
| CCTAGACTTGTGTGGTCCTG+AGG | + | chr5.1:10894853-10894872 | None:intergenic | 55.0% | |
| CCTCAGGACCACACAAGTCT+AGG | - | chr5.1:10894850-10894869 | MS.gene041181:intron | 55.0% | |
| GACTTGTGTGGTCCTGAGGA+GGG | + | chr5.1:10894849-10894868 | None:intergenic | 55.0% | |
| GCCATGGGTATCTCTTCCCA+AGG | - | chr5.1:10896471-10896490 | MS.gene041181:intron | 55.0% | |
| GCGGATAGTGCGACCATCAT+AGG | + | chr5.1:10896197-10896216 | None:intergenic | 55.0% | |
| GGCTCAATGCTCCCAAGCAT+TGG | - | chr5.1:10894698-10894717 | MS.gene041181:intron | 55.0% | |
| TAGGCTCCTAAACCCTCCTC+AGG | - | chr5.1:10894834-10894853 | MS.gene041181:intron | 55.0% | |
| TGGCAAGGGGACAAAGCCAT+GGG | - | chr5.1:10896456-10896475 | MS.gene041181:intron | 55.0% | |
| TGTGGTCCTGAGGAGGGTTT+AGG | + | chr5.1:10894843-10894862 | None:intergenic | 55.0% | |
| TTGGCAAGGGGACAAAGCCA+TGG | - | chr5.1:10896455-10896474 | MS.gene041181:intron | 55.0% | |
| ! | GGTAAGAATAGGGGGCGTGT+TGG | - | chr5.1:10896328-10896347 | MS.gene041181:intron | 55.0% |
| CTACCCAGACCCCGTCATCA+GGG | - | chr5.1:10896216-10896235 | MS.gene041181:intron | 60.0% | |
| GACCTGTGGCATCCTGAACG+TGG | + | chr5.1:10896399-10896418 | None:intergenic | 60.0% | |
| !! | TAGCCCTGATGACGGGGTCT+GGG | + | chr5.1:10896222-10896241 | None:intergenic | 60.0% |
| !! | TGATGACGGGGTCTGGGTAG+CGG | + | chr5.1:10896216-10896235 | None:intergenic | 60.0% |
| !! | TTAGCCCTGATGACGGGGTC+TGG | + | chr5.1:10896223-10896242 | None:intergenic | 60.0% |
| GCTACCCAGACCCCGTCATC+AGG | - | chr5.1:10896215-10896234 | MS.gene041181:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 10893921 | 10896570 | 10893921 | ID=MS.gene041181 |
| chr5.1 | mRNA | 10893921 | 10896570 | 10893921 | ID=MS.gene041181.t1;Parent=MS.gene041181 |
| chr5.1 | exon | 10896568 | 10896570 | 10896568 | ID=MS.gene041181.t1.exon1;Parent=MS.gene041181.t1 |
| chr5.1 | CDS | 10896568 | 10896570 | 10896568 | ID=cds.MS.gene041181.t1;Parent=MS.gene041181.t1 |
| chr5.1 | exon | 10895744 | 10895821 | 10895744 | ID=MS.gene041181.t1.exon2;Parent=MS.gene041181.t1 |
| chr5.1 | CDS | 10895744 | 10895821 | 10895744 | ID=cds.MS.gene041181.t1;Parent=MS.gene041181.t1 |
| chr5.1 | exon | 10895474 | 10895654 | 10895474 | ID=MS.gene041181.t1.exon3;Parent=MS.gene041181.t1 |
| chr5.1 | CDS | 10895474 | 10895654 | 10895474 | ID=cds.MS.gene041181.t1;Parent=MS.gene041181.t1 |
| chr5.1 | exon | 10894944 | 10895041 | 10894944 | ID=MS.gene041181.t1.exon4;Parent=MS.gene041181.t1 |
| chr5.1 | CDS | 10894944 | 10895041 | 10894944 | ID=cds.MS.gene041181.t1;Parent=MS.gene041181.t1 |
| chr5.1 | exon | 10893921 | 10894358 | 10893921 | ID=MS.gene041181.t1.exon5;Parent=MS.gene041181.t1 |
| chr5.1 | CDS | 10893921 | 10894358 | 10893921 | ID=cds.MS.gene041181.t1;Parent=MS.gene041181.t1 |
| Gene Sequence |
| Protein sequence |
