Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95672.t1 | XP_003623356.1 | 97.4 | 265 | 7 | 0 | 1 | 265 | 1 | 265 | 4.50E-145 | 523.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95672.t1 | Q93VH9 | 91.2 | 260 | 23 | 0 | 1 | 260 | 1 | 260 | 1.5e-141 | 503.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95672.t1 | G7KT73 | 97.4 | 265 | 7 | 0 | 1 | 265 | 1 | 265 | 3.2e-145 | 523.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049298 | MS.gene95672 | 0.808412 | 3.14E-50 | -1.69E-46 |
| MS.gene049361 | MS.gene95672 | 0.825391 | 4.81E-54 | -1.69E-46 |
| MS.gene050134 | MS.gene95672 | 0.819106 | 1.38E-52 | -1.69E-46 |
| MS.gene050875 | MS.gene95672 | 0.806959 | 6.39E-50 | -1.69E-46 |
| MS.gene051984 | MS.gene95672 | 0.826917 | 2.08E-54 | -1.69E-46 |
| MS.gene052209 | MS.gene95672 | 0.854685 | 1.04E-61 | -1.69E-46 |
| MS.gene052664 | MS.gene95672 | 0.81723 | 3.67E-52 | -1.69E-46 |
| MS.gene054662 | MS.gene95672 | 0.825784 | 3.88E-54 | -1.69E-46 |
| MS.gene054941 | MS.gene95672 | 0.814545 | 1.46E-51 | -1.69E-46 |
| MS.gene056387 | MS.gene95672 | -0.821302 | 4.34E-53 | -1.69E-46 |
| MS.gene05652 | MS.gene95672 | 0.813666 | 2.28E-51 | -1.69E-46 |
| MS.gene057367 | MS.gene95672 | 0.824892 | 6.31E-54 | -1.69E-46 |
| MS.gene057669 | MS.gene95672 | 0.840239 | 9.80E-58 | -1.69E-46 |
| MS.gene057990 | MS.gene95672 | 0.823299 | 1.49E-53 | -1.69E-46 |
| MS.gene058853 | MS.gene95672 | 0.806605 | 7.59E-50 | -1.69E-46 |
| MS.gene059616 | MS.gene95672 | 0.819638 | 1.05E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene59369 | MS.gene95672 | PPI |
| MS.gene95672 | MS.gene023799 | PPI |
| MS.gene95672 | MS.gene071029 | PPI |
| MS.gene95672 | MS.gene72768 | PPI |
| MS.gene95672 | MS.gene010439 | PPI |
| MS.gene95672 | MS.gene74487 | PPI |
| MS.gene95672 | MS.gene99501 | PPI |
| MS.gene95672 | MS.gene035447 | PPI |
| MS.gene047717 | MS.gene95672 | PPI |
| MS.gene53517 | MS.gene95672 | PPI |
| MS.gene43012 | MS.gene95672 | PPI |
| MS.gene95672 | MS.gene38870 | PPI |
| MS.gene95672 | MS.gene82426 | PPI |
| MS.gene95672 | MS.gene028153 | PPI |
| MS.gene42236 | MS.gene95672 | PPI |
| MS.gene27648 | MS.gene95672 | PPI |
| MS.gene95672 | MS.gene032440 | PPI |
| MS.gene069005 | MS.gene95672 | PPI |
| MS.gene95672 | MS.gene053443 | PPI |
| MS.gene95672 | MS.gene83444 | PPI |
| MS.gene95672 | MS.gene52173 | PPI |
| MS.gene95672 | MS.gene073888 | PPI |
| MS.gene95672 | MS.gene041181 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95672.t1 | MTR_7g069950 | 97.358 | 265 | 7 | 0 | 1 | 265 | 1 | 265 | 0.0 | 533 |
| MS.gene95672.t1 | MTR_4g014590 | 96.591 | 264 | 9 | 0 | 1 | 264 | 1 | 264 | 0.0 | 527 |
| MS.gene95672.t1 | MTR_5g018940 | 96.414 | 251 | 9 | 0 | 1 | 251 | 1 | 251 | 0.0 | 504 |
| MS.gene95672.t1 | MTR_5g018940 | 96.414 | 251 | 9 | 0 | 1 | 251 | 1 | 251 | 0.0 | 504 |
| MS.gene95672.t1 | MTR_8g052030 | 96.414 | 251 | 9 | 0 | 1 | 251 | 1 | 251 | 0.0 | 504 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95672.t1 | AT5G07090 | 91.255 | 263 | 22 | 1 | 1 | 263 | 1 | 262 | 0.0 | 510 |
| MS.gene95672.t1 | AT2G17360 | 91.154 | 260 | 23 | 0 | 1 | 260 | 1 | 260 | 0.0 | 509 |
| MS.gene95672.t1 | AT5G58420 | 91.255 | 263 | 22 | 1 | 1 | 263 | 1 | 262 | 0.0 | 509 |
| MS.gene95672.t1 | AT5G07090 | 90.612 | 245 | 22 | 1 | 19 | 263 | 1 | 244 | 7.36e-171 | 471 |
| MS.gene95672.t1 | AT5G07090 | 90.612 | 245 | 22 | 1 | 19 | 263 | 1 | 244 | 7.36e-171 | 471 |
| MS.gene95672.t1 | AT2G17360 | 91.713 | 181 | 15 | 0 | 1 | 181 | 1 | 181 | 6.78e-126 | 355 |
Find 89 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGAATGTTGTTATGGTTAC+TGG | 0.229538 | 7.4:-33811418 | MS.gene95672:CDS |
| TTGTGTCATTGGCCTTAATA+AGG | 0.244306 | 7.4:+33811494 | None:intergenic |
| GTCTAGTTTGATTGTGTCAT+TGG | 0.330535 | 7.4:+33811483 | None:intergenic |
| CAATTTGATACCTCTGCCTT+TGG | 0.334135 | 7.4:+33811234 | None:intergenic |
| CATCTGGACCACACAAATCT+AGG | 0.341173 | 7.4:-33812181 | MS.gene95672:CDS |
| CTATCCTGATCCCCTTATTA+AGG | 0.341569 | 7.4:-33811506 | MS.gene95672:CDS |
| CACATCAAATTTGATGAAAT+CGG | 0.353228 | 7.4:+33811441 | None:intergenic |
| CAGCGCCATGTTCTAGTTGA+TGG | 0.370577 | 7.4:-33812077 | MS.gene95672:CDS |
| TGTGGTCCAGATGACGGCTT+TGG | 0.371859 | 7.4:+33812191 | None:intergenic |
| GTGGTCCAGATGACGGCTTT+GGG | 0.392493 | 7.4:+33812192 | None:intergenic |
| CATGAATTTGCCACCCGATT+GGG | 0.398903 | 7.4:-33811304 | MS.gene95672:CDS |
| CCCTATCTGAACACCTATGA+TGG | 0.404871 | 7.4:-33811541 | MS.gene95672:CDS |
| TGATGTGGGGAATGTTGTTA+TGG | 0.412773 | 7.4:-33811425 | MS.gene95672:CDS |
| TAGGCCCCAAAGCCGTCATC+TGG | 0.419333 | 7.4:-33812197 | MS.gene95672:CDS |
| TTCTAGTTGATGGCAAAGTT+AGG | 0.423367 | 7.4:-33812067 | MS.gene95672:CDS |
| GCGGATGGTACGCCCATCAT+AGG | 0.425274 | 7.4:+33811528 | None:intergenic |
| TGTGTCATTGGCCTTAATAA+GGG | 0.427302 | 7.4:+33811495 | None:intergenic |
| GCGGATGGCTGCTTCTCAAC+AGG | 0.434949 | 7.4:-33811188 | MS.gene95672:CDS |
| TTATCAAGCATCCAATGCTT+TGG | 0.443903 | 7.4:+33812332 | None:intergenic |
| AATTTGATACCTCTGCCTTT+GGG | 0.446445 | 7.4:+33811235 | None:intergenic |
| AAGGTACGATCTGTTCAGTT+TGG | 0.452040 | 7.4:-33811577 | MS.gene95672:CDS |
| TTCCTTTGATCCTTATCTTG+AGG | 0.458746 | 7.4:-33812151 | MS.gene95672:CDS |
| TGGCAAAGGGTCGAAACCTT+GGG | 0.468242 | 7.4:-33811266 | MS.gene95672:CDS |
| TTGGCAAAGGGTCGAAACCT+TGG | 0.470746 | 7.4:-33811267 | MS.gene95672:CDS |
| CCCATCATAGGTGTTCAGAT+AGG | 0.472698 | 7.4:+33811540 | None:intergenic |
| GATTCCGTCTCCACTCTGTA+AGG | 0.474226 | 7.4:-33811759 | MS.gene95672:CDS |
| TTAGTCTGTTCCTCAAGATA+AGG | 0.480277 | 7.4:+33812141 | None:intergenic |
| TTGGGTAATGTCTTCACCAT+TGG | 0.482231 | 7.4:-33811286 | MS.gene95672:CDS |
| ATCTGTTCAGTTTGGTCAGA+AGG | 0.484249 | 7.4:-33811569 | MS.gene95672:CDS |
| TTGGCCTTAATAAGGGGATC+AGG | 0.486385 | 7.4:+33811502 | None:intergenic |
| TGGTGAAGACATTACCCAAT+CGG | 0.489747 | 7.4:+33811290 | None:intergenic |
| TCATGAATTTGCCACCCGAT+TGG | 0.504246 | 7.4:-33811305 | MS.gene95672:CDS |
| CGATTTCATCAAATTTGATG+TGG | 0.506182 | 7.4:-33811440 | MS.gene95672:CDS |
| ATTCATGACCAGTAGCATCC+TGG | 0.506676 | 7.4:+33811320 | None:intergenic |
| ATTCATGTCCAGGATGCTAC+TGG | 0.515866 | 7.4:-33811328 | MS.gene95672:CDS |
| CCATCATAGGTGTTCAGATA+GGG | 0.523285 | 7.4:+33811541 | None:intergenic |
| GGTGAAGACATTACCCAATC+GGG | 0.525214 | 7.4:+33811291 | None:intergenic |
| GATTTCATCAAATTTGATGT+GGG | 0.526677 | 7.4:-33811439 | MS.gene95672:CDS |
| GGCTCAATGCTCCAAAGCAT+TGG | 0.529449 | 7.4:-33812343 | MS.gene95672:CDS |
| AATGTCTTCACCATTGGCAA+AGG | 0.532928 | 7.4:-33811280 | MS.gene95672:CDS |
| TGACACAATCAAACTAGACT+TGG | 0.533545 | 7.4:-33811479 | MS.gene95672:CDS |
| AGGTTTCGACCCTTTGCCAA+TGG | 0.537915 | 7.4:+33811270 | None:intergenic |
| CGTCTTCTCTATGACACAAA+GGG | 0.544988 | 7.4:-33811784 | MS.gene95672:CDS |
| GATTTGTGTGGTCCAGATGA+CGG | 0.548493 | 7.4:+33812185 | None:intergenic |
| TCTGTTCAGTTTGGTCAGAA+GGG | 0.549501 | 7.4:-33811568 | MS.gene95672:CDS |
| AGTAGCATCCTGGACATGAA+TGG | 0.557858 | 7.4:+33811330 | None:intergenic |
| CATTGGATGCTTGATAAGCT+TGG | 0.558832 | 7.4:-33812326 | MS.gene95672:CDS |
| TCTCGTGTATTTCAGGCAAG+AGG | 0.559812 | 7.4:-33812386 | MS.gene95672:intron |
| TGGATGCTTGATAAGCTTGG+TGG | 0.561385 | 7.4:-33812323 | MS.gene95672:CDS |
| TGACCGTCATTGAGGAGGCT+AGG | 0.563524 | 7.4:-33811213 | MS.gene95672:CDS |
| CCCATACCCATAAAACCAGC+AGG | 0.563703 | 7.4:+33812029 | None:intergenic |
| TTCCTCAAGATAAGGATCAA+AGG | 0.570517 | 7.4:+33812149 | None:intergenic |
| ATTTCATCAAATTTGATGTG+GGG | 0.571477 | 7.4:-33811438 | MS.gene95672:CDS |
| ATGTCTTCACCATTGGCAAA+GGG | 0.574389 | 7.4:-33811279 | MS.gene95672:CDS |
| TTGTTATGGTTACTGGAGGA+AGG | 0.577647 | 7.4:-33811411 | MS.gene95672:CDS |
| GTGTCATTGGCCTTAATAAG+GGG | 0.578877 | 7.4:+33811496 | None:intergenic |
| ATCTGGACCACACAAATCTA+GGG | 0.581480 | 7.4:-33812180 | MS.gene95672:CDS |
| CATCCCTTACAGAGTGGAGA+CGG | 0.583231 | 7.4:+33811755 | None:intergenic |
| CTGTTCAGTTTGGTCAGAAG+GGG | 0.586960 | 7.4:-33811567 | MS.gene95672:CDS |
| CCTATCTGAACACCTATGAT+GGG | 0.588146 | 7.4:-33811540 | MS.gene95672:CDS |
| TATCAAATTGACCGTCATTG+AGG | 0.588863 | 7.4:-33811221 | MS.gene95672:CDS |
| AACATGGCGCTGCATCAAGA+TGG | 0.592027 | 7.4:+33812088 | None:intergenic |
| CTTCCTAGCCTCCTCAATGA+CGG | 0.598313 | 7.4:+33811210 | None:intergenic |
| TTTGCAGTTTAAGCTTTGCA+AGG | 0.600506 | 7.4:-33811596 | MS.gene95672:intron |
| CCGTCTTCTCTATGACACAA+AGG | 0.601166 | 7.4:-33811785 | MS.gene95672:CDS |
| CTTCATCATCCCTTACAGAG+TGG | 0.602533 | 7.4:+33811749 | None:intergenic |
| TGTAAGGGATGATGAAGCAA+AGG | 0.603418 | 7.4:-33811743 | MS.gene95672:intron |
| TCAAGATAAGGATCAAAGGA+AGG | 0.604671 | 7.4:+33812153 | None:intergenic |
| ATTCCGTCTCCACTCTGTAA+GGG | 0.605035 | 7.4:-33811758 | MS.gene95672:CDS |
| GTTTGAAGAAACATTTGAAG+CGG | 0.606217 | 7.4:-33812364 | MS.gene95672:CDS |
| GATGGCTGCTTCTCAACAGG+TGG | 0.606348 | 7.4:-33811185 | MS.gene95672:CDS |
| GTGTCTCTTCCCAAAGGCAG+AGG | 0.606870 | 7.4:-33811244 | MS.gene95672:CDS |
| CTTTGCCATCAACTAGAACA+TGG | 0.608587 | 7.4:+33812072 | None:intergenic |
| CCTTTGTGTCATAGAGAAGA+CGG | 0.614516 | 7.4:+33811785 | None:intergenic |
| GGAAGGAACAGAGGTCGTGT+TGG | 0.620629 | 7.4:-33811394 | MS.gene95672:CDS |
| TCATTGAGGAGGCTAGGAAG+CGG | 0.621155 | 7.4:-33811207 | MS.gene95672:CDS |
| CAAATTGACCGTCATTGAGG+AGG | 0.630124 | 7.4:-33811218 | MS.gene95672:CDS |
| TGGTCCAGATGACGGCTTTG+GGG | 0.632723 | 7.4:+33812193 | None:intergenic |
| TGAGGAGGCTAGGAAGCGGA+TGG | 0.633594 | 7.4:-33811203 | MS.gene95672:CDS |
| ACAGACAAGACATATCCTGC+TGG | 0.635500 | 7.4:-33812044 | MS.gene95672:CDS |
| CCTTGGGTGTCTCTTCCCAA+AGG | 0.641736 | 7.4:-33811250 | MS.gene95672:CDS |
| AATGTTGTTATGGTTACTGG+AGG | 0.642866 | 7.4:-33811415 | MS.gene95672:CDS |
| TAATAAGGGGATCAGGATAG+CGG | 0.659430 | 7.4:+33811509 | None:intergenic |
| AAGGGGATCAGGATAGCGGA+TGG | 0.659733 | 7.4:+33811513 | None:intergenic |
| GAAGACATTACCCAATCGGG+TGG | 0.669278 | 7.4:+33811294 | None:intergenic |
| CCTTTGGGAAGAGACACCCA+AGG | 0.673569 | 7.4:+33811250 | None:intergenic |
| AGGCACTCCCTAGATTTGTG+TGG | 0.684968 | 7.4:+33812173 | None:intergenic |
| AAGAACAGAGAGAAACACAA+AGG | 0.703870 | 7.4:-33811364 | MS.gene95672:CDS |
| GTTACTGGAGGAAGGAACAG+AGG | 0.715931 | 7.4:-33811403 | MS.gene95672:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAAAATCAATATAAAGA+AGG | + | chr7.4:33814161-33814180 | None:intergenic | 10.0% |
| !!! | AAAAAAATCTAGAATTTATT+TGG | + | chr7.4:33811855-33811874 | None:intergenic | 10.0% |
| !!! | AATTTTTTACTTTGAATAAT+TGG | - | chr7.4:33813833-33813852 | MS.gene95672:intron | 10.0% |
| !!! | ATCAAATTTTTTTTAGTAAA+TGG | - | chr7.4:33811777-33811796 | MS.gene95672:CDS | 10.0% |
| !! | AAATATTATAGATATTGTGA+AGG | + | chr7.4:33814091-33814110 | None:intergenic | 15.0% |
| !! | ATGTTCAATATGTATAAAAA+AGG | + | chr7.4:33811954-33811973 | None:intergenic | 15.0% |
| !! | GAAATTATTCAAATCTAAAT+TGG | + | chr7.4:33811512-33811531 | None:intergenic | 15.0% |
| !!! | AACATTATTATTTTTTCTGA+TGG | - | chr7.4:33811393-33811412 | MS.gene95672:CDS | 15.0% |
| !!! | TTTTGAGTTAATATTTGTAT+TGG | - | chr7.4:33811922-33811941 | MS.gene95672:intron | 15.0% |
| !!! | TTTTTTTTAGTTTTCTTTAC+TGG | - | chr7.4:33812047-33812066 | MS.gene95672:CDS | 15.0% |
| !!! | TTTTTTTTTTCAAAAACATG+TGG | - | chr7.4:33811728-33811747 | MS.gene95672:intron | 15.0% |
| !! | AAATAATATAAACAACACAG+CGG | + | chr7.4:33813527-33813546 | None:intergenic | 20.0% |
| !! | AAATGCAAAAACAAAAATAG+TGG | + | chr7.4:33812141-33812160 | None:intergenic | 20.0% |
| !! | AAGCCAAAATAAATAAAGTA+TGG | + | chr7.4:33812244-33812263 | None:intergenic | 20.0% |
| !! | AAGTCATCAAACATTATTAA+TGG | + | chr7.4:33812952-33812971 | None:intergenic | 20.0% |
| !! | AATTTATATAAACTACATGC+TGG | - | chr7.4:33814133-33814152 | MS.gene95672:intron | 20.0% |
| !! | AGCCAAAATAAATAAAGTAT+GGG | + | chr7.4:33812243-33812262 | None:intergenic | 20.0% |
| !! | ATGATTCTTGTCTAATAAAT+TGG | - | chr7.4:33812072-33812091 | MS.gene95672:CDS | 20.0% |
| !! | ATTATAGACATTAATGATGT+AGG | - | chr7.4:33813078-33813097 | MS.gene95672:intron | 20.0% |
| !! | CTTAAAATTATTTGTAGATG+TGG | - | chr7.4:33813127-33813146 | MS.gene95672:intron | 20.0% |
| !! | TTTGACATTGTAAATAATCT+CGG | - | chr7.4:33812504-33812523 | MS.gene95672:intron | 20.0% |
| !!! | AACATAAAATGTGTTGTTAT+TGG | - | chr7.4:33812377-33812396 | MS.gene95672:intron | 20.0% |
| !!! | AGAGACATTTTAAATAATCT+CGG | - | chr7.4:33811440-33811459 | MS.gene95672:CDS | 20.0% |
| !!! | ATTGAATTTCTTTGTTGTAT+AGG | - | chr7.4:33813582-33813601 | MS.gene95672:intron | 20.0% |
| !!! | ATTTTTGTTGATTGTAATGT+TGG | - | chr7.4:33811252-33811271 | MS.gene95672:CDS | 20.0% |
| !!! | CACATCTACAAATAATTTTA+AGG | + | chr7.4:33813129-33813148 | None:intergenic | 20.0% |
| !!! | CTTTTTTAGTTAGGAATATT+AGG | - | chr7.4:33811362-33811381 | MS.gene95672:CDS | 20.0% |
| !!! | TATGTGATTCTTTTTTAGTT+AGG | - | chr7.4:33811353-33811372 | MS.gene95672:CDS | 20.0% |
| !!! | TCTAATTGATTTAGATTAGA+CGG | - | chr7.4:33812589-33812608 | MS.gene95672:intron | 20.0% |
| !!! | TTTTAGTAAATGGTTTTTCT+AGG | - | chr7.4:33811787-33811806 | MS.gene95672:CDS | 20.0% |
| !!! | TTTTTGTTGATTGTAATGTT+GGG | - | chr7.4:33811253-33811272 | MS.gene95672:CDS | 20.0% |
| ! | AAAATTTCCAACATTATCGA+TGG | + | chr7.4:33812165-33812184 | None:intergenic | 25.0% |
| ! | ATTAACTCAAAAACCGTTAA+GGG | + | chr7.4:33811914-33811933 | None:intergenic | 25.0% |
| ! | ATTTCATCAAATTTGATGTG+GGG | - | chr7.4:33814360-33814379 | MS.gene95672:intron | 25.0% |
| ! | CACATCAAATTTGATGAAAT+CGG | + | chr7.4:33814360-33814379 | None:intergenic | 25.0% |
| ! | GATTTCATCAAATTTGATGT+GGG | - | chr7.4:33814359-33814378 | MS.gene95672:intron | 25.0% |
| ! | TAAAACAAACATACCCTTAA+CGG | - | chr7.4:33811898-33811917 | MS.gene95672:intron | 25.0% |
| ! | TAGACAATATAACCAAAAGT+AGG | - | chr7.4:33813892-33813911 | MS.gene95672:intron | 25.0% |
| ! | TATTAACTCAAAAACCGTTA+AGG | + | chr7.4:33811915-33811934 | None:intergenic | 25.0% |
| ! | TATTGAACATATCTTTAGTC+TGG | - | chr7.4:33811964-33811983 | MS.gene95672:intron | 25.0% |
| !! | AAAAAGTGTAATTGTAGTGT+AGG | + | chr7.4:33811189-33811208 | None:intergenic | 25.0% |
| !! | AAAAGTGTAATTGTAGTGTA+GGG | + | chr7.4:33811188-33811207 | None:intergenic | 25.0% |
| !! | TCTATGTGTAATTTTGTATG+TGG | - | chr7.4:33812311-33812330 | MS.gene95672:intron | 25.0% |
| !!! | CACCCATACTTTATTTATTT+TGG | - | chr7.4:33812238-33812257 | MS.gene95672:intron | 25.0% |
| !!! | GAATCATTTTTTGACTCAAA+TGG | - | chr7.4:33811668-33811687 | MS.gene95672:intron | 25.0% |
| !!! | TCTGTTTGATTTTTATTAGC+TGG | - | chr7.4:33812275-33812294 | MS.gene95672:intron | 25.0% |
| !!! | TGTAATGTTGGGTTTTATTT+TGG | - | chr7.4:33811264-33811283 | MS.gene95672:CDS | 25.0% |
| !!! | TGTTTTTGAGTACTTTGATT+TGG | - | chr7.4:33812009-33812028 | MS.gene95672:intron | 25.0% |
| !!! | TTTTTTCTAATGTTGTCTAC+TGG | - | chr7.4:33812430-33812449 | MS.gene95672:intron | 25.0% |
| AAACCTAGATTGAGAAAGAA+AGG | + | chr7.4:33813231-33813250 | None:intergenic | 30.0% | |
| AATTATTTGTAGATGTGGCT+AGG | - | chr7.4:33813132-33813151 | MS.gene95672:intron | 30.0% | |
| ACATAACACATTCTCCAAAT+TGG | - | chr7.4:33812552-33812571 | MS.gene95672:intron | 30.0% | |
| CGATTTCATCAAATTTGATG+TGG | - | chr7.4:33814358-33814377 | MS.gene95672:intron | 30.0% | |
| GAGTTTATTTCAAGCCAATT+TGG | + | chr7.4:33812569-33812588 | None:intergenic | 30.0% | |
| GATAGAACTGTTCTGATAAA+TGG | - | chr7.4:33811475-33811494 | MS.gene95672:CDS | 30.0% | |
| GTTTGAAGAAACATTTGAAG+CGG | - | chr7.4:33813434-33813453 | MS.gene95672:intron | 30.0% | |
| TACAGTTAAAACAGAGAATC+TGG | + | chr7.4:33812476-33812495 | None:intergenic | 30.0% | |
| TAGTACACAGTTTACGTTTA+GGG | - | chr7.4:33811597-33811616 | MS.gene95672:intron | 30.0% | |
| TGTTGAGATCGATAACTTTA+TGG | - | chr7.4:33811553-33811572 | MS.gene95672:CDS | 30.0% | |
| TTAGTTAGGAATATTAGGAG+AGG | - | chr7.4:33811367-33811386 | MS.gene95672:CDS | 30.0% | |
| TTTCTAGGTAGTAAACAAAC+AGG | - | chr7.4:33811802-33811821 | MS.gene95672:CDS | 30.0% | |
| ! | AGGTTTAAAATCAGTAGACA+TGG | + | chr7.4:33812192-33812211 | None:intergenic | 30.0% |
| ! | TAGAATCACAAACCTACTTT+TGG | + | chr7.4:33813907-33813926 | None:intergenic | 30.0% |
| ! | TAGTTTTTCTCGTGTATTTC+AGG | - | chr7.4:33813405-33813424 | MS.gene95672:intron | 30.0% |
| !! | AGATGTTTGCTTTTGTCTTA+AGG | - | chr7.4:33812761-33812780 | MS.gene95672:intron | 30.0% |
| !! | TAGTTCTAAGCCTGAAAAAT+TGG | - | chr7.4:33812998-33813017 | MS.gene95672:intron | 30.0% |
| !!! | TTTATTTTGGCTTAGCTTAC+TGG | - | chr7.4:33812251-33812270 | MS.gene95672:intron | 30.0% |
| AAGAACAGAGAGAAACACAA+AGG | - | chr7.4:33814434-33814453 | MS.gene95672:intron | 35.0% | |
| AAGCTTAAACTGCAAAAGGT+TGG | + | chr7.4:33814198-33814217 | None:intergenic | 35.0% | |
| AATGAGTGAGAACTTGTATG+CGG | + | chr7.4:33813028-33813047 | None:intergenic | 35.0% | |
| AATGTTGTTATGGTTACTGG+AGG | - | chr7.4:33814383-33814402 | MS.gene95672:intron | 35.0% | |
| AATTTGATACCTCTGCCTTT+GGG | + | chr7.4:33814566-33814585 | None:intergenic | 35.0% | |
| AGTACTAGTACTAGTAGACA+TGG | + | chr7.4:33812979-33812998 | None:intergenic | 35.0% | |
| CTAAACGTAAACTGTGTACT+AGG | + | chr7.4:33811598-33811617 | None:intergenic | 35.0% | |
| CTACCTTTCTTTCTCAATCT+AGG | - | chr7.4:33813225-33813244 | MS.gene95672:intron | 35.0% | |
| CTAGATTGAGAAAGAAAGGT+AGG | + | chr7.4:33813227-33813246 | None:intergenic | 35.0% | |
| CTAGTACACAGTTTACGTTT+AGG | - | chr7.4:33811596-33811615 | MS.gene95672:intron | 35.0% | |
| CTTGACAAAAACATTGTCAG+TGG | + | chr7.4:33811422-33811441 | None:intergenic | 35.0% | |
| GACTCAAATGGAAAGCTATT+AGG | - | chr7.4:33811680-33811699 | MS.gene95672:intron | 35.0% | |
| TAAACTCTATACTCAGCCAA+TGG | + | chr7.4:33812669-33812688 | None:intergenic | 35.0% | |
| TAGCTGTTCACATGATTCAT+CGG | - | chr7.4:33813163-33813182 | MS.gene95672:intron | 35.0% | |
| TATCAAATTGACCGTCATTG+AGG | - | chr7.4:33814577-33814596 | MS.gene95672:intron | 35.0% | |
| TCAAGATAAGGATCAAAGGA+AGG | + | chr7.4:33813648-33813667 | None:intergenic | 35.0% | |
| TGACACAATCAAACTAGACT+TGG | - | chr7.4:33814319-33814338 | MS.gene95672:intron | 35.0% | |
| TGAGAATGATGTCCATACAA+AGG | + | chr7.4:33813503-33813522 | None:intergenic | 35.0% | |
| TGCAAAGCTTAAACTGCAAA+AGG | + | chr7.4:33814202-33814221 | None:intergenic | 35.0% | |
| TGTCTTAAGGTTTCAAGGTT+AGG | - | chr7.4:33812774-33812793 | MS.gene95672:intron | 35.0% | |
| TTAGTCTGTTCCTCAAGATA+AGG | + | chr7.4:33813660-33813679 | None:intergenic | 35.0% | |
| TTATCAAGCATCCAATGCTT+TGG | + | chr7.4:33813469-33813488 | None:intergenic | 35.0% | |
| TTCCTCAAGATAAGGATCAA+AGG | + | chr7.4:33813652-33813671 | None:intergenic | 35.0% | |
| TTCCTTTGATCCTTATCTTG+AGG | - | chr7.4:33813647-33813666 | MS.gene95672:intron | 35.0% | |
| TTTGCAGTTTAAGCTTTGCA+AGG | - | chr7.4:33814202-33814221 | MS.gene95672:intron | 35.0% | |
| ! | ACTGGTAATGTATTTGCCAA+GGG | - | chr7.4:33812448-33812467 | MS.gene95672:intron | 35.0% |
| ! | GCTTTTGTCTTAAGGTTTCA+AGG | - | chr7.4:33812769-33812788 | MS.gene95672:intron | 35.0% |
| ! | GTCTAGTTTGATTGTGTCAT+TGG | + | chr7.4:33814318-33814337 | None:intergenic | 35.0% |
| ! | TACTGGTAATGTATTTGCCA+AGG | - | chr7.4:33812447-33812466 | MS.gene95672:intron | 35.0% |
| ! | TGATTTTAAACCTGCCAACT+TGG | - | chr7.4:33812199-33812218 | MS.gene95672:intron | 35.0% |
| !! | TGTGTCATTGGCCTTAATAA+GGG | + | chr7.4:33814306-33814325 | None:intergenic | 35.0% |
| !! | TTCTAGTTGATGGCAAAGTT+AGG | - | chr7.4:33813731-33813750 | MS.gene95672:intron | 35.0% |
| !! | TTGTGTCATTGGCCTTAATA+AGG | + | chr7.4:33814307-33814326 | None:intergenic | 35.0% |
| !!! | ACATATCCTGCTGGTTTTAT+GGG | - | chr7.4:33813763-33813782 | MS.gene95672:intron | 35.0% |
| AAGGTACGATCTGTTCAGTT+TGG | - | chr7.4:33814221-33814240 | MS.gene95672:intron | 40.0% | |
| AATGTCTTCACCATTGGCAA+AGG | - | chr7.4:33814518-33814537 | MS.gene95672:intron | 40.0% | |
| ATCTGGACCACACAAATCTA+GGG | - | chr7.4:33813618-33813637 | MS.gene95672:intron | 40.0% | |
| ATCTGTTCAGTTTGGTCAGA+AGG | - | chr7.4:33814229-33814248 | MS.gene95672:intron | 40.0% | |
| ATGTCTTCACCATTGGCAAA+GGG | - | chr7.4:33814519-33814538 | MS.gene95672:intron | 40.0% | |
| CAACTTGGACATCTTGTACA+AGG | - | chr7.4:33812214-33812233 | MS.gene95672:intron | 40.0% | |
| CAATTTGATACCTCTGCCTT+TGG | + | chr7.4:33814567-33814586 | None:intergenic | 40.0% | |
| CAGCAAGCTGTAAAAGTTTC+TGG | - | chr7.4:33812404-33812423 | MS.gene95672:intron | 40.0% | |
| CATTGGATGCTTGATAAGCT+TGG | - | chr7.4:33813472-33813491 | MS.gene95672:intron | 40.0% | |
| CCATCATAGGTGTTCAGATA+GGG | + | chr7.4:33814260-33814279 | None:intergenic | 40.0% | |
| CCTATCTGAACACCTATGAT+GGG | - | chr7.4:33814258-33814277 | MS.gene95672:intron | 40.0% | |
| CCTTTGTGTCATAGAGAAGA+CGG | + | chr7.4:33814016-33814035 | None:intergenic | 40.0% | |
| CGTCTTCTCTATGACACAAA+GGG | - | chr7.4:33814014-33814033 | MS.gene95672:intron | 40.0% | |
| CTATCCTGATCCCCTTATTA+AGG | - | chr7.4:33814292-33814311 | MS.gene95672:intron | 40.0% | |
| CTGTGTACTAGGATTCTCTA+CGG | + | chr7.4:33811587-33811606 | None:intergenic | 40.0% | |
| CTTGTACAAGATGTCCAAGT+TGG | + | chr7.4:33812216-33812235 | None:intergenic | 40.0% | |
| CTTTGCCATCAACTAGAACA+TGG | + | chr7.4:33813729-33813748 | None:intergenic | 40.0% | |
| GCATTTGCCATCGATAATGT+TGG | - | chr7.4:33812155-33812174 | MS.gene95672:CDS | 40.0% | |
| GGGAATGTTGTTATGGTTAC+TGG | - | chr7.4:33814380-33814399 | MS.gene95672:intron | 40.0% | |
| GGGCATTAGACTTAATTGCA+CGG | - | chr7.4:33813789-33813808 | MS.gene95672:intron | 40.0% | |
| TAAACTGCAAAAGGTTGGAG+AGG | + | chr7.4:33814193-33814212 | None:intergenic | 40.0% | |
| TAATAAGGGGATCAGGATAG+CGG | + | chr7.4:33814292-33814311 | None:intergenic | 40.0% | |
| TCTGTTCAGTTTGGTCAGAA+GGG | - | chr7.4:33814230-33814249 | MS.gene95672:intron | 40.0% | |
| TGATGTGGGGAATGTTGTTA+TGG | - | chr7.4:33814373-33814392 | MS.gene95672:intron | 40.0% | |
| TGCCTAAAATCTCAGTCCAT+TGG | - | chr7.4:33812650-33812669 | MS.gene95672:intron | 40.0% | |
| TGGTGAAGACATTACCCAAT+CGG | + | chr7.4:33814511-33814530 | None:intergenic | 40.0% | |
| TGTAAGGGATGATGAAGCAA+AGG | - | chr7.4:33814055-33814074 | MS.gene95672:intron | 40.0% | |
| TTGGGTAATGTCTTCACCAT+TGG | - | chr7.4:33814512-33814531 | MS.gene95672:intron | 40.0% | |
| TTGTTATGGTTACTGGAGGA+AGG | - | chr7.4:33814387-33814406 | MS.gene95672:intron | 40.0% | |
| ! | ATGCGGATGTCCAATTTTTC+AGG | + | chr7.4:33813011-33813030 | None:intergenic | 40.0% |
| ! | CTGGTAATGTATTTGCCAAG+GGG | - | chr7.4:33812449-33812468 | MS.gene95672:intron | 40.0% |
| ! | GAGAAGACGGAAGTTTTCAT+TGG | + | chr7.4:33814003-33814022 | None:intergenic | 40.0% |
| !! | ACGGAAGTTTTCATTGGTCT+TGG | + | chr7.4:33813997-33814016 | None:intergenic | 40.0% |
| !! | GTGTCATTGGCCTTAATAAG+GGG | + | chr7.4:33814305-33814324 | None:intergenic | 40.0% |
| !!! | AGCCAATGGACTGAGATTTT+AGG | + | chr7.4:33812655-33812674 | None:intergenic | 40.0% |
| !!! | CGGAAGTTTTCATTGGTCTT+GGG | + | chr7.4:33813996-33814015 | None:intergenic | 40.0% |
| !!! | GACATATCCTGCTGGTTTTA+TGG | - | chr7.4:33813762-33813781 | MS.gene95672:intron | 40.0% |
| !!! | TTTTGAGACCATTCATGTCC+AGG | - | chr7.4:33814460-33814479 | MS.gene95672:intron | 40.0% |
| ACAGACAAGACATATCCTGC+TGG | - | chr7.4:33813754-33813773 | MS.gene95672:intron | 45.0% | |
| AGTAGCATCCTGGACATGAA+TGG | + | chr7.4:33814471-33814490 | None:intergenic | 45.0% | |
| ATTCATGACCAGTAGCATCC+TGG | + | chr7.4:33814481-33814500 | None:intergenic | 45.0% | |
| ATTCATGTCCAGGATGCTAC+TGG | - | chr7.4:33814470-33814489 | MS.gene95672:intron | 45.0% | |
| ATTCCGTCTCCACTCTGTAA+GGG | - | chr7.4:33814040-33814059 | MS.gene95672:intron | 45.0% | |
| CAAATTGACCGTCATTGAGG+AGG | - | chr7.4:33814580-33814599 | MS.gene95672:intron | 45.0% | |
| CATCTGGACCACACAAATCT+AGG | - | chr7.4:33813617-33813636 | MS.gene95672:intron | 45.0% | |
| CATGAATTTGCCACCCGATT+GGG | - | chr7.4:33814494-33814513 | MS.gene95672:intron | 45.0% | |
| CCCATCATAGGTGTTCAGAT+AGG | + | chr7.4:33814261-33814280 | None:intergenic | 45.0% | |
| CCCTATCTGAACACCTATGA+TGG | - | chr7.4:33814257-33814276 | MS.gene95672:intron | 45.0% | |
| CCGTCTTCTCTATGACACAA+AGG | - | chr7.4:33814013-33814032 | MS.gene95672:intron | 45.0% | |
| CTGTTCAGTTTGGTCAGAAG+GGG | - | chr7.4:33814231-33814250 | MS.gene95672:intron | 45.0% | |
| CTTCATCATCCCTTACAGAG+TGG | + | chr7.4:33814052-33814071 | None:intergenic | 45.0% | |
| GATTTGTGTGGTCCAGATGA+CGG | + | chr7.4:33813616-33813635 | None:intergenic | 45.0% | |
| GGTGAAGACATTACCCAATC+GGG | + | chr7.4:33814510-33814529 | None:intergenic | 45.0% | |
| TCATGAATTTGCCACCCGAT+TGG | - | chr7.4:33814493-33814512 | MS.gene95672:intron | 45.0% | |
| TCTCGTGTATTTCAGGCAAG+AGG | - | chr7.4:33813412-33813431 | MS.gene95672:intron | 45.0% | |
| TGCAAAAGGTTGGAGAGGTA+GGG | + | chr7.4:33814188-33814207 | None:intergenic | 45.0% | |
| TGGATGCTTGATAAGCTTGG+TGG | - | chr7.4:33813475-33813494 | MS.gene95672:intron | 45.0% | |
| ! | CGTTTAGGGTGCGTTTGTTT+AGG | - | chr7.4:33811611-33811630 | MS.gene95672:intron | 45.0% |
| ! | TACAAGATGTCCAAGTTGGC+AGG | + | chr7.4:33812212-33812231 | None:intergenic | 45.0% |
| !! | TTGGCCTTAATAAGGGGATC+AGG | + | chr7.4:33814299-33814318 | None:intergenic | 45.0% |
| !!! | CCTGCTGGTTTTATGGGTAT+GGG | - | chr7.4:33813769-33813788 | MS.gene95672:intron | 45.0% |
| !!! | TCCTGCTGGTTTTATGGGTA+TGG | - | chr7.4:33813768-33813787 | MS.gene95672:intron | 45.0% |
| !!! | AAAAAAAAAAAAAAAGATTT+TGG | + | chr7.4:33811717-33811736 | None:intergenic | 5.0% |
| !!! | AAAAAAAAAAAAAAGATTTT+GGG | + | chr7.4:33811716-33811735 | None:intergenic | 5.0% |
| AACAGAGAATCTGGTCCCCT+TGG | + | chr7.4:33812467-33812486 | None:intergenic | 50.0% | |
| AACATGGCGCTGCATCAAGA+TGG | + | chr7.4:33813713-33813732 | None:intergenic | 50.0% | |
| AGGCACTCCCTAGATTTGTG+TGG | + | chr7.4:33813628-33813647 | None:intergenic | 50.0% | |
| AGGTTTCGACCCTTTGCCAA+TGG | + | chr7.4:33814531-33814550 | None:intergenic | 50.0% | |
| CATCCCTTACAGAGTGGAGA+CGG | + | chr7.4:33814046-33814065 | None:intergenic | 50.0% | |
| CCCATACCCATAAAACCAGC+AGG | + | chr7.4:33813772-33813791 | None:intergenic | 50.0% | |
| CTGCAAAAGGTTGGAGAGGT+AGG | + | chr7.4:33814189-33814208 | None:intergenic | 50.0% | |
| CTTCCTAGCCTCCTCAATGA+CGG | + | chr7.4:33814591-33814610 | None:intergenic | 50.0% | |
| GAAGACATTACCCAATCGGG+TGG | + | chr7.4:33814507-33814526 | None:intergenic | 50.0% | |
| GATTCCGTCTCCACTCTGTA+AGG | - | chr7.4:33814039-33814058 | MS.gene95672:intron | 50.0% | |
| GGCTCAATGCTCCAAAGCAT+TGG | - | chr7.4:33813455-33813474 | MS.gene95672:intron | 50.0% | |
| GTTACTGGAGGAAGGAACAG+AGG | - | chr7.4:33814395-33814414 | MS.gene95672:intron | 50.0% | |
| TCATTGAGGAGGCTAGGAAG+CGG | - | chr7.4:33814591-33814610 | MS.gene95672:intron | 50.0% | |
| TGGCAAAGGGTCGAAACCTT+GGG | - | chr7.4:33814532-33814551 | MS.gene95672:intron | 50.0% | |
| TTGGCAAAGGGTCGAAACCT+TGG | - | chr7.4:33814531-33814550 | MS.gene95672:intron | 50.0% | |
| ! | CAGCGCCATGTTCTAGTTGA+TGG | - | chr7.4:33813721-33813740 | MS.gene95672:intron | 50.0% |
| !! | AGCTTGGTGGTGCCTTTGTA+TGG | - | chr7.4:33813488-33813507 | MS.gene95672:intron | 50.0% |
| CCTTGGGTGTCTCTTCCCAA+AGG | - | chr7.4:33814548-33814567 | MS.gene95672:intron | 55.0% | |
| GATGGCTGCTTCTCAACAGG+TGG | - | chr7.4:33814613-33814632 | MS.gene95672:intron | 55.0% | |
| GGAAGGAACAGAGGTCGTGT+TGG | - | chr7.4:33814404-33814423 | MS.gene95672:intron | 55.0% | |
| GTGTCTCTTCCCAAAGGCAG+AGG | - | chr7.4:33814554-33814573 | MS.gene95672:intron | 55.0% | |
| TGACCGTCATTGAGGAGGCT+AGG | - | chr7.4:33814585-33814604 | MS.gene95672:intron | 55.0% | |
| ! | CCTTTGGGAAGAGACACCCA+AGG | + | chr7.4:33814551-33814570 | None:intergenic | 55.0% |
| ! | GTGGTCCAGATGACGGCTTT+GGG | + | chr7.4:33813609-33813628 | None:intergenic | 55.0% |
| ! | TGGTCCAGATGACGGCTTTG+GGG | + | chr7.4:33813608-33813627 | None:intergenic | 55.0% |
| ! | TGTGGTCCAGATGACGGCTT+TGG | + | chr7.4:33813610-33813629 | None:intergenic | 55.0% |
| !! | AAGGGGATCAGGATAGCGGA+TGG | + | chr7.4:33814288-33814307 | None:intergenic | 55.0% |
| GCGGATGGCTGCTTCTCAAC+AGG | - | chr7.4:33814610-33814629 | MS.gene95672:intron | 60.0% | |
| GCGGATGGTACGCCCATCAT+AGG | + | chr7.4:33814273-33814292 | None:intergenic | 60.0% | |
| TAGGCCCCAAAGCCGTCATC+TGG | - | chr7.4:33813601-33813620 | MS.gene95672:intron | 60.0% | |
| TGAGGAGGCTAGGAAGCGGA+TGG | - | chr7.4:33814595-33814614 | MS.gene95672:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 33811174 | 33814646 | 33811174 | ID=MS.gene95672 |
| chr7.4 | mRNA | 33811174 | 33814646 | 33811174 | ID=MS.gene95672.t1;Parent=MS.gene95672 |
| chr7.4 | exon | 33814644 | 33814646 | 33814644 | ID=MS.gene95672.t1.exon1;Parent=MS.gene95672.t1 |
| chr7.4 | CDS | 33814644 | 33814646 | 33814644 | ID=cds.MS.gene95672.t1;Parent=MS.gene95672.t1 |
| chr7.4 | exon | 33812316 | 33812393 | 33812316 | ID=MS.gene95672.t1.exon2;Parent=MS.gene95672.t1 |
| chr7.4 | CDS | 33812316 | 33812393 | 33812316 | ID=cds.MS.gene95672.t1;Parent=MS.gene95672.t1 |
| chr7.4 | exon | 33812036 | 33812216 | 33812036 | ID=MS.gene95672.t1.exon3;Parent=MS.gene95672.t1 |
| chr7.4 | CDS | 33812036 | 33812216 | 33812036 | ID=cds.MS.gene95672.t1;Parent=MS.gene95672.t1 |
| chr7.4 | exon | 33811744 | 33811841 | 33811744 | ID=MS.gene95672.t1.exon4;Parent=MS.gene95672.t1 |
| chr7.4 | CDS | 33811744 | 33811841 | 33811744 | ID=cds.MS.gene95672.t1;Parent=MS.gene95672.t1 |
| chr7.4 | exon | 33811174 | 33811611 | 33811174 | ID=MS.gene95672.t1.exon5;Parent=MS.gene95672.t1 |
| chr7.4 | CDS | 33811174 | 33811611 | 33811174 | ID=cds.MS.gene95672.t1;Parent=MS.gene95672.t1 |
| Gene Sequence |
| Protein sequence |
