Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047717.t1 | XP_003611879.1 | 100 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 9.60E-148 | 532.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047717.t1 | P49204 | 90.5 | 262 | 25 | 0 | 1 | 262 | 1 | 262 | 6.3e-140 | 498.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047717.t1 | B7FL29 | 100.0 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 6.9e-148 | 532.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene047717 | MS.gene010439 | PPI |
| MS.gene047717 | MS.gene38870 | PPI |
| MS.gene047717 | MS.gene82426 | PPI |
| MS.gene047717 | MS.gene035447 | PPI |
| MS.gene047717 | MS.gene032440 | PPI |
| MS.gene047717 | MS.gene59369 | PPI |
| MS.gene047717 | MS.gene53517 | PPI |
| MS.gene047717 | MS.gene028153 | PPI |
| MS.gene047717 | MS.gene83444 | PPI |
| MS.gene047717 | MS.gene95672 | PPI |
| MS.gene047717 | MS.gene071029 | PPI |
| MS.gene047717 | MS.gene073888 | PPI |
| MS.gene047717 | MS.gene27648 | PPI |
| MS.gene047717 | MS.gene053443 | PPI |
| MS.gene047717 | MS.gene041181 | PPI |
| MS.gene43012 | MS.gene047717 | PPI |
| MS.gene047717 | MS.gene069005 | PPI |
| MS.gene047717 | MS.gene023799 | PPI |
| MS.gene047717 | MS.gene52173 | PPI |
| MS.gene047717 | MS.gene72768 | PPI |
| MS.gene047717 | MS.gene43012 | PPI |
| MS.gene047717 | MS.gene42236 | PPI |
| MS.gene047717 | MS.gene74487 | PPI |
| MS.gene047717 | MS.gene99501 | PPI |
| MS.gene069005 | MS.gene047717 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047717.t1 | MTR_5g018940 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
| MS.gene047717.t1 | MTR_5g018940 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
| MS.gene047717.t1 | MTR_8g052030 | 100.000 | 265 | 0 | 0 | 1 | 265 | 1 | 265 | 0.0 | 545 |
| MS.gene047717.t1 | MTR_4g014590 | 95.094 | 265 | 12 | 1 | 1 | 265 | 1 | 264 | 0.0 | 518 |
| MS.gene047717.t1 | MTR_7g069950 | 94.510 | 255 | 14 | 0 | 1 | 255 | 1 | 255 | 0.0 | 501 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene047717.t1 | AT5G07090 | 90.458 | 262 | 25 | 0 | 1 | 262 | 1 | 262 | 0.0 | 506 |
| MS.gene047717.t1 | AT2G17360 | 90.769 | 260 | 24 | 0 | 1 | 260 | 1 | 260 | 0.0 | 504 |
| MS.gene047717.t1 | AT5G58420 | 90.076 | 262 | 26 | 0 | 1 | 262 | 1 | 262 | 0.0 | 503 |
| MS.gene047717.t1 | AT5G07090 | 89.754 | 244 | 25 | 0 | 19 | 262 | 1 | 244 | 2.41e-169 | 468 |
| MS.gene047717.t1 | AT5G07090 | 89.754 | 244 | 25 | 0 | 19 | 262 | 1 | 244 | 2.41e-169 | 468 |
| MS.gene047717.t1 | AT2G17360 | 91.160 | 181 | 16 | 0 | 1 | 181 | 1 | 181 | 2.61e-125 | 354 |
Find 90 sgRNAs with CRISPR-Local
Find 151 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTGGATGCTTGACAAAT+TGG | 0.267158 | 5.3:-10729140 | MS.gene047717:CDS |
| TTAGCCCTGATGACGGGGTC+TGG | 0.336130 | 5.3:+10727735 | None:intergenic |
| TGTGGTCCAGATGAGGGTTT+AGG | 0.339811 | 5.3:+10729018 | None:intergenic |
| CGAAAGCTCTCATTTGTCTT+GGG | 0.340445 | 5.3:+10728377 | None:intergenic |
| AGGTTCGTTCAGTGCAATTT+GGG | 0.356395 | 5.3:-10727809 | MS.gene047717:CDS |
| AAGGTTCGTTCAGTGCAATT+TGG | 0.362570 | 5.3:-10727810 | MS.gene047717:CDS |
| TGCGACCATCATAGGTGTTC+AGG | 0.372486 | 5.3:+10727769 | None:intergenic |
| GTTACCCAGACCCCGTCATC+AGG | 0.378657 | 5.3:-10727740 | MS.gene047717:CDS |
| GGTGACTGGTGGTAAGAATA+GGG | 0.379702 | 5.3:-10727637 | MS.gene047717:CDS |
| TTGTCAAGCATCCAATGCTT+GGG | 0.386706 | 5.3:+10729145 | None:intergenic |
| ATTTCATCAAATTTGATGTT+GGG | 0.389801 | 5.3:-10727671 | MS.gene047717:CDS |
| GACTTATCCAGCTGGATTCA+TGG | 0.391447 | 5.3:-10728863 | MS.gene047717:CDS |
| TGGTGACTGGTGGTAAGAAT+AGG | 0.412505 | 5.3:-10727638 | MS.gene047717:CDS |
| AATGAGTGGGAGACATTCCC+TGG | 0.424661 | 5.3:+10728990 | None:intergenic |
| CTGGTCAATGTGTTCACTAT+TGG | 0.427005 | 5.3:-10727519 | MS.gene047717:CDS |
| ACGAAAGCTCTCATTTGTCT+TGG | 0.430485 | 5.3:+10728376 | None:intergenic |
| CTTTGAGACAATCCACGTTC+AGG | 0.430746 | 5.3:-10727571 | MS.gene047717:CDS |
| TAATTTAATACCCTTGCCCT+TGG | 0.435192 | 5.3:+10727467 | None:intergenic |
| TTTGTCAAGCATCCAATGCT+TGG | 0.437860 | 5.3:+10729144 | None:intergenic |
| CAACGACATGTCCTTGTTGA+TGG | 0.438982 | 5.3:-10728904 | MS.gene047717:CDS |
| ACGGATAGTGCGACCATCAT+AGG | 0.439814 | 5.3:+10727761 | None:intergenic |
| CCTCATCATCTCTGACTGAA+TGG | 0.453638 | 5.3:+10728321 | None:intergenic |
| GTGTCATTAGCCCTGATGAC+GGG | 0.456779 | 5.3:+10727729 | None:intergenic |
| TCATGAGTTTGCAACTCGTC+TGG | 0.461260 | 5.3:-10727538 | MS.gene047717:CDS |
| CATTGGATGCTTGACAAATT+GGG | 0.462746 | 5.3:-10729139 | MS.gene047717:CDS |
| TGATGTTGGGAATGTAGTTA+TGG | 0.467410 | 5.3:-10727658 | MS.gene047717:CDS |
| CAAGAACAGAGAAAAGCATA+AGG | 0.471422 | 5.3:-10727598 | MS.gene047717:CDS |
| CCATCATAGGTGTTCAGGTA+TGG | 0.471971 | 5.3:+10727774 | None:intergenic |
| TAGGCTCCTAAACCCTCATC+TGG | 0.473255 | 5.3:-10729024 | MS.gene047717:CDS |
| CATCTGGACCACACAAGTCC+AGG | 0.474068 | 5.3:-10729008 | MS.gene047717:CDS |
| ATGGAGACGGAAACGGCCTT+TGG | 0.474465 | 5.3:+10728340 | None:intergenic |
| TAGCCCTGATGACGGGGTCT+GGG | 0.476922 | 5.3:+10727736 | None:intergenic |
| TCAGAATAGCAATGACTTCA+CGG | 0.477884 | 5.3:+10728929 | None:intergenic |
| TCCTTGTTGATGGCAAAGTC+AGG | 0.479245 | 5.3:-10728894 | MS.gene047717:CDS |
| GATTTCATCAAATTTGATGT+TGG | 0.482045 | 5.3:-10727672 | MS.gene047717:CDS |
| TAACTGTCATTGAGGAAGCT+AGG | 0.506931 | 5.3:-10727446 | MS.gene047717:CDS |
| ACTTATCCAGCTGGATTCAT+GGG | 0.514100 | 5.3:-10728862 | MS.gene047717:intron |
| GAAAGCTCTCATTTGTCTTG+GGG | 0.515146 | 5.3:+10728378 | None:intergenic |
| TTCATACCCATGAATCCAGC+TGG | 0.521349 | 5.3:+10728856 | None:intergenic |
| CCATACCTGAACACCTATGA+TGG | 0.523294 | 5.3:-10727774 | MS.gene047717:CDS |
| CTGAACGTGGATTGTCTCAA+AGG | 0.529462 | 5.3:+10727572 | None:intergenic |
| GGCTAATGACACTATCAAGC+TGG | 0.530045 | 5.3:-10727718 | MS.gene047717:CDS |
| GCCATGGGTTTCTCTTCCCA+AGG | 0.532349 | 5.3:-10727484 | MS.gene047717:CDS |
| GGTTTCTCTTCCCAAGGGCA+AGG | 0.533054 | 5.3:-10727478 | MS.gene047717:CDS |
| TGACACTATCAAGCTGGACC+TGG | 0.533062 | 5.3:-10727712 | MS.gene047717:CDS |
| TGATGACGGGGTCTGGGTAA+CGG | 0.533614 | 5.3:+10727742 | None:intergenic |
| AATTTAATACCCTTGCCCTT+GGG | 0.533880 | 5.3:+10727468 | None:intergenic |
| TTGGCAAGGGGACAAAGCCA+TGG | 0.543228 | 5.3:-10727500 | MS.gene047717:CDS |
| TCAGTGCAATTTGGGCAGAA+AGG | 0.544106 | 5.3:-10727801 | MS.gene047717:CDS |
| GGGAATGTAGTTATGGTGAC+TGG | 0.550052 | 5.3:-10727651 | MS.gene047717:CDS |
| GACTTGTGTGGTCCAGATGA+GGG | 0.550628 | 5.3:+10729012 | None:intergenic |
| TATTAAATTAACTGTCATTG+AGG | 0.555206 | 5.3:-10727454 | MS.gene047717:CDS |
| CAATGTGTTCACTATTGGCA+AGG | 0.556225 | 5.3:-10727514 | MS.gene047717:CDS |
| TGTCAAGCATCCAATGCTTG+GGG | 0.568821 | 5.3:+10729146 | None:intergenic |
| GGACTTGTGTGGTCCAGATG+AGG | 0.570686 | 5.3:+10729011 | None:intergenic |
| GTTTCTCTTCCCAAGGGCAA+GGG | 0.571738 | 5.3:-10727477 | MS.gene047717:CDS |
| TCATTGAGGAAGCTAGGAAG+AGG | 0.573169 | 5.3:-10727440 | MS.gene047717:CDS |
| TGGCAAGGGGACAAAGCCAT+GGG | 0.585049 | 5.3:-10727499 | MS.gene047717:CDS |
| TGACTGAATGGAGACGGAAA+CGG | 0.588177 | 5.3:+10728333 | None:intergenic |
| CATCTCTGACTGAATGGAGA+CGG | 0.590006 | 5.3:+10728327 | None:intergenic |
| GTTTGAAGAAGCATTTGAAG+AGG | 0.590332 | 5.3:-10729177 | MS.gene047717:CDS |
| AGTCAGAGATGATGAGGCAA+AGG | 0.591111 | 5.3:-10728315 | MS.gene047717:intron |
| CCATTCAGTCAGAGATGATG+AGG | 0.595121 | 5.3:-10728321 | MS.gene047717:CDS |
| AAGAACAGAGAAAAGCATAA+GGG | 0.598361 | 5.3:-10727597 | MS.gene047717:CDS |
| AATGTGTTCACTATTGGCAA+GGG | 0.602196 | 5.3:-10727513 | MS.gene047717:CDS |
| ATCTGGACCACACAAGTCCA+GGG | 0.607205 | 5.3:-10729007 | MS.gene047717:CDS |
| ATCCACGTTCAGGATGCCAC+TGG | 0.616221 | 5.3:-10727561 | MS.gene047717:CDS |
| GACCAGTGGCATCCTGAACG+TGG | 0.616751 | 5.3:+10727559 | None:intergenic |
| CCATGGGTTTCTCTTCCCAA+GGG | 0.618310 | 5.3:-10727483 | MS.gene047717:CDS |
| TTTCGCAAGATCAGAATGAG+TGG | 0.619970 | 5.3:+10728976 | None:intergenic |
| ACTGACAAGACTTATCCAGC+TGG | 0.621794 | 5.3:-10728871 | MS.gene047717:CDS |
| CGTTTGCTGTATGACACCAA+AGG | 0.627898 | 5.3:-10728356 | MS.gene047717:CDS |
| AGTGTCATTAGCCCTGATGA+CGG | 0.628940 | 5.3:+10727728 | None:intergenic |
| ATGGCAGTTCAAGCTGTGCA+AGG | 0.628961 | 5.3:-10727829 | MS.gene047717:intron |
| CACTATCAAGCTGGACCTGG+AGG | 0.630561 | 5.3:-10727709 | MS.gene047717:CDS |
| GTGACTGGTGGTAAGAATAG+GGG | 0.630861 | 5.3:-10727636 | MS.gene047717:CDS |
| TTCGCAAGATCAGAATGAGT+GGG | 0.633304 | 5.3:+10728977 | None:intergenic |
| TCCTGACTTTGCCATCAACA+AGG | 0.633379 | 5.3:+10728893 | None:intergenic |
| TGTCATTAGCCCTGATGACG+GGG | 0.640624 | 5.3:+10727730 | None:intergenic |
| TTGTGAATGTAACAGGCGAG+AGG | 0.643632 | 5.3:-10729199 | MS.gene047717:intron |
| GTCAAGCATCCAATGCTTGG+GGG | 0.650283 | 5.3:+10729147 | None:intergenic |
| TTACCCAGACCCCGTCATCA+GGG | 0.650709 | 5.3:-10727739 | MS.gene047717:CDS |
| AGACATTCCCTGGACTTGTG+TGG | 0.650760 | 5.3:+10729000 | None:intergenic |
| CCCTTGGGAAGAGAAACCCA+TGG | 0.658024 | 5.3:+10727483 | None:intergenic |
| CATTGAGGAAGCTAGGAAGA+GGG | 0.661325 | 5.3:-10727439 | MS.gene047717:CDS |
| TGACTGGTGGTAAGAATAGG+GGG | 0.662881 | 5.3:-10727635 | MS.gene047717:CDS |
| ATGTGTTCACTATTGGCAAG+GGG | 0.666865 | 5.3:-10727512 | MS.gene047717:CDS |
| TGGATGCTTGACAAATTGGG+TGG | 0.687057 | 5.3:-10729136 | MS.gene047717:CDS |
| AGTTGCAAACTCATGACCAG+TGG | 0.709942 | 5.3:+10727545 | None:intergenic |
| AATGTAGTTATGGTGACTGG+TGG | 0.733221 | 5.3:-10727648 | MS.gene047717:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACATTAAAATCAAATATAAA+CGG | + | chr5.3:10727642-10727661 | None:intergenic | 10.0% |
| !!! | ATATTTTAAAAAATACAATC+AGG | + | chr5.3:10728923-10728942 | None:intergenic | 10.0% |
| !!! | TATTTTAAAAAATACAATCA+GGG | + | chr5.3:10728922-10728941 | None:intergenic | 10.0% |
| !!! | TTTATCATTATTTATTTTCT+GGG | - | chr5.3:10727550-10727569 | MS.gene047717:CDS | 10.0% |
| !!! | TTTTTTAAAATATTTGTATC+TGG | - | chr5.3:10728930-10728949 | MS.gene047717:CDS | 10.0% |
| !! | ATATTATAATTAACATGTGA+TGG | - | chr5.3:10729306-10729325 | MS.gene047717:intron | 15.0% |
| !! | CAAATTCAAAAATTTATCTT+AGG | + | chr5.3:10728124-10728143 | None:intergenic | 15.0% |
| !!! | CTAAGATAAATTTTTGAATT+TGG | - | chr5.3:10728122-10728141 | MS.gene047717:intron | 15.0% |
| !!! | CTTTATCATTATTTATTTTC+TGG | - | chr5.3:10727549-10727568 | MS.gene047717:CDS | 15.0% |
| !!! | GTAATTTGATTTATGATATT+AGG | - | chr5.3:10727610-10727629 | MS.gene047717:CDS | 15.0% |
| !! | AAAAAATAAACCAATCCAAA+CGG | + | chr5.3:10727749-10727768 | None:intergenic | 20.0% |
| !! | ATTCTATGAATCATTTGATT+TGG | - | chr5.3:10728890-10728909 | MS.gene047717:CDS | 20.0% |
| !! | ATTTCATCAAATTTGATGTT+GGG | - | chr5.3:10729677-10729696 | MS.gene047717:intron | 20.0% |
| !! | TATCATAAATCAAATTACAC+AGG | + | chr5.3:10727608-10727627 | None:intergenic | 20.0% |
| !! | TATTAAATTAACTGTCATTG+AGG | - | chr5.3:10729894-10729913 | MS.gene047717:intron | 20.0% |
| !!! | AGATTTATTTTATGTATGCA+TGG | - | chr5.3:10729384-10729403 | MS.gene047717:intron | 20.0% |
| !!! | ATCATATTTCAATTGATTCA+AGG | - | chr5.3:10728256-10728275 | MS.gene047717:intron | 20.0% |
| !!! | ATTTTTTGCGTGAAATTTAT+AGG | - | chr5.3:10728305-10728324 | MS.gene047717:intron | 20.0% |
| !!! | GAACTTTAATTTTTGATCTT+AGG | - | chr5.3:10727986-10728005 | MS.gene047717:intron | 20.0% |
| ! | AAAAATAAGTCAATCCAAAC+GGG | - | chr5.3:10727943-10727962 | MS.gene047717:intron | 25.0% |
| ! | AGAGATCAGTAATCAAATAA+AGG | + | chr5.3:10729061-10729080 | None:intergenic | 25.0% |
| ! | CAAAAATAAGTCAATCCAAA+CGG | - | chr5.3:10727942-10727961 | MS.gene047717:intron | 25.0% |
| ! | GATTTCATCAAATTTGATGT+TGG | - | chr5.3:10729676-10729695 | MS.gene047717:intron | 25.0% |
| ! | TATGAAAATTTGAACTGAAG+TGG | - | chr5.3:10728823-10728842 | MS.gene047717:intron | 25.0% |
| ! | TCAATCAAGCTCAAAATTAA+GGG | + | chr5.3:10727671-10727690 | None:intergenic | 25.0% |
| ! | TGATGTATTATAGCAAAGTA+TGG | - | chr5.3:10728641-10728660 | MS.gene047717:intron | 25.0% |
| !! | CGAAAATTTATTTGGAGTTT+AGG | - | chr5.3:10727580-10727599 | MS.gene047717:CDS | 25.0% |
| !! | GTTTGTTGCGAAAATTTATT+TGG | - | chr5.3:10727572-10727591 | MS.gene047717:CDS | 25.0% |
| !!! | GTTTTATCTGAAGTTAAAAG+TGG | - | chr5.3:10728713-10728732 | MS.gene047717:intron | 25.0% |
| ATGAAAAACATGCCAAATAC+AGG | + | chr5.3:10728788-10728807 | None:intergenic | 30.0% | |
| ATGGTGTAATTAACATGTGA+TGG | - | chr5.3:10729403-10729422 | MS.gene047717:intron | 30.0% | |
| ATGTTAAACACACGACATAA+AGG | + | chr5.3:10728048-10728067 | None:intergenic | 30.0% | |
| ATTCATAGAATTCTTTCACG+AGG | + | chr5.3:10728881-10728900 | None:intergenic | 30.0% | |
| CTCAATCAAGCTCAAAATTA+AGG | + | chr5.3:10727672-10727691 | None:intergenic | 30.0% | |
| GCAAAAAATTACATCAGTCT+TGG | + | chr5.3:10728294-10728313 | None:intergenic | 30.0% | |
| GTATTATAGCAAAGTATGGT+AGG | - | chr5.3:10728645-10728664 | MS.gene047717:intron | 30.0% | |
| TAAATAAGTCGATCCAAACA+TGG | - | chr5.3:10727714-10727733 | MS.gene047717:CDS | 30.0% | |
| TAAATAAGTTGCCTGATCTT+CGG | - | chr5.3:10728852-10728871 | MS.gene047717:intron | 30.0% | |
| TTAGACGATCTATTGTAACA+TGG | + | chr5.3:10728760-10728779 | None:intergenic | 30.0% | |
| TTTGAATCTCATCTTCGTAA+TGG | - | chr5.3:10727449-10727468 | MS.gene047717:CDS | 30.0% | |
| ! | AAGAACAGAGAAAAGCATAA+GGG | - | chr5.3:10729751-10729770 | MS.gene047717:intron | 30.0% |
| ! | TTTGGCATGTTTTTCATTAC+TGG | - | chr5.3:10728791-10728810 | MS.gene047717:intron | 30.0% |
| AAGCCATTCAAAGTATGCTA+CGG | + | chr5.3:10729107-10729126 | None:intergenic | 35.0% | |
| AATGTGTTCACTATTGGCAA+GGG | - | chr5.3:10729835-10729854 | MS.gene047717:intron | 35.0% | |
| AATTTAATACCCTTGCCCTT+GGG | + | chr5.3:10729883-10729902 | None:intergenic | 35.0% | |
| AGCAAAGTATGGTAGGTAAA+CGG | - | chr5.3:10728652-10728671 | MS.gene047717:intron | 35.0% | |
| CATTGGATGCTTGACAAATT+GGG | - | chr5.3:10728209-10728228 | MS.gene047717:intron | 35.0% | |
| CGATCCAAACATGGTTTAAT+GGG | - | chr5.3:10727723-10727742 | MS.gene047717:CDS | 35.0% | |
| GCATTATTCACAACATGTCA+AGG | - | chr5.3:10727810-10727829 | MS.gene047717:CDS | 35.0% | |
| TAATTTAATACCCTTGCCCT+TGG | + | chr5.3:10729884-10729903 | None:intergenic | 35.0% | |
| TCAGAATAGCAATGACTTCA+CGG | + | chr5.3:10728422-10728441 | None:intergenic | 35.0% | |
| TCGATCCAAACATGGTTTAA+TGG | - | chr5.3:10727722-10727741 | MS.gene047717:CDS | 35.0% | |
| TGATGTTGGGAATGTAGTTA+TGG | - | chr5.3:10729690-10729709 | MS.gene047717:intron | 35.0% | |
| TGGATGTTTGTGAATGTAAC+AGG | - | chr5.3:10728142-10728161 | MS.gene047717:intron | 35.0% | |
| TTCCTTGTATGTGATGTACA+TGG | - | chr5.3:10729500-10729519 | MS.gene047717:intron | 35.0% | |
| ! | ACACAGTGTTGTTACTGAAA+TGG | - | chr5.3:10727513-10727532 | MS.gene047717:CDS | 35.0% |
| ! | CAAGAACAGAGAAAAGCATA+AGG | - | chr5.3:10729750-10729769 | MS.gene047717:intron | 35.0% |
| !! | GTTTGAAGAAGCATTTGAAG+AGG | - | chr5.3:10728171-10728190 | MS.gene047717:intron | 35.0% |
| !! | TGAATCATTTGATTTGGCTG+TGG | - | chr5.3:10728896-10728915 | MS.gene047717:CDS | 35.0% |
| AAGGTTCGTTCAGTGCAATT+TGG | - | chr5.3:10729538-10729557 | MS.gene047717:intron | 40.0% | |
| AATGTAGTTATGGTGACTGG+TGG | - | chr5.3:10729700-10729719 | MS.gene047717:intron | 40.0% | |
| ACGAAAGCTCTCATTTGTCT+TGG | + | chr5.3:10728975-10728994 | None:intergenic | 40.0% | |
| ACTAACACTAAGAACCCGTT+TGG | + | chr5.3:10727960-10727979 | None:intergenic | 40.0% | |
| ACTCCGTAGCATACTTTGAA+TGG | - | chr5.3:10729101-10729120 | MS.gene047717:intron | 40.0% | |
| ACTTATCCAGCTGGATTCAT+GGG | - | chr5.3:10728486-10728505 | MS.gene047717:intron | 40.0% | |
| AGGTTCGTTCAGTGCAATTT+GGG | - | chr5.3:10729539-10729558 | MS.gene047717:intron | 40.0% | |
| ATGTGTTCACTATTGGCAAG+GGG | - | chr5.3:10729836-10729855 | MS.gene047717:intron | 40.0% | |
| CAATGTGTTCACTATTGGCA+AGG | - | chr5.3:10729834-10729853 | MS.gene047717:intron | 40.0% | |
| CGAAAGCTCTCATTTGTCTT+GGG | + | chr5.3:10728974-10728993 | None:intergenic | 40.0% | |
| CGTCTAAGTTCACCTGTATT+TGG | - | chr5.3:10728773-10728792 | MS.gene047717:intron | 40.0% | |
| CTGGTCAATGTGTTCACTAT+TGG | - | chr5.3:10729829-10729848 | MS.gene047717:intron | 40.0% | |
| GAAAGCTCTCATTTGTCTTG+GGG | + | chr5.3:10728973-10728992 | None:intergenic | 40.0% | |
| GCATTGGATGCTTGACAAAT+TGG | - | chr5.3:10728208-10728227 | MS.gene047717:intron | 40.0% | |
| GTGATGGTTGTTACTGTGAA+TGG | - | chr5.3:10729322-10729341 | MS.gene047717:intron | 40.0% | |
| TAACTGTCATTGAGGAAGCT+AGG | - | chr5.3:10729902-10729921 | MS.gene047717:intron | 40.0% | |
| TGCCATGTACATCACATACA+AGG | + | chr5.3:10729505-10729524 | None:intergenic | 40.0% | |
| TTCGCAAGATCAGAATGAGT+GGG | + | chr5.3:10728374-10728393 | None:intergenic | 40.0% | |
| TTGTCAAGCATCCAATGCTT+GGG | + | chr5.3:10728206-10728225 | None:intergenic | 40.0% | |
| TTTCGCAAGATCAGAATGAG+TGG | + | chr5.3:10728375-10728394 | None:intergenic | 40.0% | |
| TTTGGACAATCAACGTGCTT+TGG | - | chr5.3:10728553-10728572 | MS.gene047717:intron | 40.0% | |
| TTTGTCAAGCATCCAATGCT+TGG | + | chr5.3:10728207-10728226 | None:intergenic | 40.0% | |
| !!! | CAACAATCTTGTTTTCCTCC+AGG | + | chr5.3:10729657-10729676 | None:intergenic | 40.0% |
| ACGGCCCATTAAACCATGTT+TGG | + | chr5.3:10727730-10727749 | None:intergenic | 45.0% | |
| ACTGACAAGACTTATCCAGC+TGG | - | chr5.3:10728477-10728496 | MS.gene047717:intron | 45.0% | |
| AGTCAGAGATGATGAGGCAA+AGG | - | chr5.3:10729033-10729052 | MS.gene047717:intron | 45.0% | |
| AGTTGCAAACTCATGACCAG+TGG | + | chr5.3:10729806-10729825 | None:intergenic | 45.0% | |
| CAACGACATGTCCTTGTTGA+TGG | - | chr5.3:10728444-10728463 | MS.gene047717:intron | 45.0% | |
| CATCTCTGACTGAATGGAGA+CGG | + | chr5.3:10729024-10729043 | None:intergenic | 45.0% | |
| CATTGAGGAAGCTAGGAAGA+GGG | - | chr5.3:10729909-10729928 | MS.gene047717:intron | 45.0% | |
| CCATACCTGAACACCTATGA+TGG | - | chr5.3:10729574-10729593 | MS.gene047717:intron | 45.0% | |
| CCATCATAGGTGTTCAGGTA+TGG | + | chr5.3:10729577-10729596 | None:intergenic | 45.0% | |
| CCATTCAGTCAGAGATGATG+AGG | - | chr5.3:10729027-10729046 | MS.gene047717:intron | 45.0% | |
| CCTCATCATCTCTGACTGAA+TGG | + | chr5.3:10729030-10729049 | None:intergenic | 45.0% | |
| GACTTATCCAGCTGGATTCA+TGG | - | chr5.3:10728485-10728504 | MS.gene047717:intron | 45.0% | |
| GGCTAATGACACTATCAAGC+TGG | - | chr5.3:10729630-10729649 | MS.gene047717:intron | 45.0% | |
| GGGAATGTAGTTATGGTGAC+TGG | - | chr5.3:10729697-10729716 | MS.gene047717:intron | 45.0% | |
| GGTGACTGGTGGTAAGAATA+GGG | - | chr5.3:10729711-10729730 | MS.gene047717:intron | 45.0% | |
| GTGACTGGTGGTAAGAATAG+GGG | - | chr5.3:10729712-10729731 | MS.gene047717:intron | 45.0% | |
| TCAGTGCAATTTGGGCAGAA+AGG | - | chr5.3:10729547-10729566 | MS.gene047717:intron | 45.0% | |
| TCATGAGTTTGCAACTCGTC+TGG | - | chr5.3:10729810-10729829 | MS.gene047717:intron | 45.0% | |
| TCATTGAGGAAGCTAGGAAG+AGG | - | chr5.3:10729908-10729927 | MS.gene047717:intron | 45.0% | |
| TCCTGACTTTGCCATCAACA+AGG | + | chr5.3:10728458-10728477 | None:intergenic | 45.0% | |
| TGACTGAATGGAGACGGAAA+CGG | + | chr5.3:10729018-10729037 | None:intergenic | 45.0% | |
| TGACTGGTGGTAAGAATAGG+GGG | - | chr5.3:10729713-10729732 | MS.gene047717:intron | 45.0% | |
| TGGATGCTTGACAAATTGGG+TGG | - | chr5.3:10728212-10728231 | MS.gene047717:intron | 45.0% | |
| TGGTGACTGGTGGTAAGAAT+AGG | - | chr5.3:10729710-10729729 | MS.gene047717:intron | 45.0% | |
| TGTCAAGCATCCAATGCTTG+GGG | + | chr5.3:10728205-10728224 | None:intergenic | 45.0% | |
| TTCATACCCATGAATCCAGC+TGG | + | chr5.3:10728495-10728514 | None:intergenic | 45.0% | |
| TTGTGAATGTAACAGGCGAG+AGG | - | chr5.3:10728149-10728168 | MS.gene047717:intron | 45.0% | |
| ! | ACATGGTTTAATGGGCCGTT+TGG | - | chr5.3:10727731-10727750 | MS.gene047717:CDS | 45.0% |
| ! | AGTGTCATTAGCCCTGATGA+CGG | + | chr5.3:10729623-10729642 | None:intergenic | 45.0% |
| ! | CTGAACGTGGATTGTCTCAA+AGG | + | chr5.3:10729779-10729798 | None:intergenic | 45.0% |
| ! | GTTTAATGGGCCGTTTGGAT+TGG | - | chr5.3:10727736-10727755 | MS.gene047717:CDS | 45.0% |
| !! | CGTTTGCTGTATGACACCAA+AGG | - | chr5.3:10728992-10729011 | MS.gene047717:CDS | 45.0% |
| !! | CTTTGAGACAATCCACGTTC+AGG | - | chr5.3:10729777-10729796 | MS.gene047717:intron | 45.0% |
| !! | TCCTTGTTGATGGCAAAGTC+AGG | - | chr5.3:10728454-10728473 | MS.gene047717:intron | 45.0% |
| !!! | AATAATTGATTAATTTATTT+TGG | - | chr5.3:10728535-10728554 | MS.gene047717:intron | 5.0% |
| AATGAGTGGGAGACATTCCC+TGG | + | chr5.3:10728361-10728380 | None:intergenic | 50.0% | |
| ACGGATAGTGCGACCATCAT+AGG | + | chr5.3:10729590-10729609 | None:intergenic | 50.0% | |
| AGACATTCCCTGGACTTGTG+TGG | + | chr5.3:10728351-10728370 | None:intergenic | 50.0% | |
| ATCTGGACCACACAAGTCCA+GGG | - | chr5.3:10728341-10728360 | MS.gene047717:CDS | 50.0% | |
| ATGGCAGTTCAAGCTGTGCA+AGG | - | chr5.3:10729519-10729538 | MS.gene047717:intron | 50.0% | |
| CCATGGGTTTCTCTTCCCAA+GGG | - | chr5.3:10729865-10729884 | MS.gene047717:intron | 50.0% | |
| GACTTGTGTGGTCCAGATGA+GGG | + | chr5.3:10728339-10728358 | None:intergenic | 50.0% | |
| GTCAAGCATCCAATGCTTGG+GGG | + | chr5.3:10728204-10728223 | None:intergenic | 50.0% | |
| GTTTCTCTTCCCAAGGGCAA+GGG | - | chr5.3:10729871-10729890 | MS.gene047717:intron | 50.0% | |
| TAGGCTCCTAAACCCTCATC+TGG | - | chr5.3:10728324-10728343 | MS.gene047717:CDS | 50.0% | |
| TCACGAGGATACCGAAGATC+AGG | + | chr5.3:10728866-10728885 | None:intergenic | 50.0% | |
| TGACACTATCAAGCTGGACC+TGG | - | chr5.3:10729636-10729655 | MS.gene047717:intron | 50.0% | |
| TGCGACCATCATAGGTGTTC+AGG | + | chr5.3:10729582-10729601 | None:intergenic | 50.0% | |
| TGTGGTCCAGATGAGGGTTT+AGG | + | chr5.3:10728333-10728352 | None:intergenic | 50.0% | |
| ! | GTGTCATTAGCCCTGATGAC+GGG | + | chr5.3:10729622-10729641 | None:intergenic | 50.0% |
| ! | TGTCATTAGCCCTGATGACG+GGG | + | chr5.3:10729621-10729640 | None:intergenic | 50.0% |
| ATCCACGTTCAGGATGCCAC+TGG | - | chr5.3:10729787-10729806 | MS.gene047717:intron | 55.0% | |
| ATGGAGACGGAAACGGCCTT+TGG | + | chr5.3:10729011-10729030 | None:intergenic | 55.0% | |
| CACTATCAAGCTGGACCTGG+AGG | - | chr5.3:10729639-10729658 | MS.gene047717:intron | 55.0% | |
| CATCTGGACCACACAAGTCC+AGG | - | chr5.3:10728340-10728359 | MS.gene047717:CDS | 55.0% | |
| CCCTTGGGAAGAGAAACCCA+TGG | + | chr5.3:10729868-10729887 | None:intergenic | 55.0% | |
| GCCATGGGTTTCTCTTCCCA+AGG | - | chr5.3:10729864-10729883 | MS.gene047717:intron | 55.0% | |
| GGACTTGTGTGGTCCAGATG+AGG | + | chr5.3:10728340-10728359 | None:intergenic | 55.0% | |
| GGTTTCTCTTCCCAAGGGCA+AGG | - | chr5.3:10729870-10729889 | MS.gene047717:intron | 55.0% | |
| TGGCAAGGGGACAAAGCCAT+GGG | - | chr5.3:10729849-10729868 | MS.gene047717:intron | 55.0% | |
| TTACCCAGACCCCGTCATCA+GGG | - | chr5.3:10729609-10729628 | MS.gene047717:intron | 55.0% | |
| TTGGCAAGGGGACAAAGCCA+TGG | - | chr5.3:10729848-10729867 | MS.gene047717:intron | 55.0% | |
| ! | GGTAAGAATAGGGGGCGTGT+TGG | - | chr5.3:10729721-10729740 | MS.gene047717:intron | 55.0% |
| !! | TGATGACGGGGTCTGGGTAA+CGG | + | chr5.3:10729609-10729628 | None:intergenic | 55.0% |
| GACCAGTGGCATCCTGAACG+TGG | + | chr5.3:10729792-10729811 | None:intergenic | 60.0% | |
| GGCTCAATGCCCCCAAGCAT+TGG | - | chr5.3:10728192-10728211 | MS.gene047717:intron | 60.0% | |
| GTTACCCAGACCCCGTCATC+AGG | - | chr5.3:10729608-10729627 | MS.gene047717:intron | 60.0% | |
| !! | TAGCCCTGATGACGGGGTCT+GGG | + | chr5.3:10729615-10729634 | None:intergenic | 60.0% |
| !! | TTAGCCCTGATGACGGGGTC+TGG | + | chr5.3:10729616-10729635 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 10727407 | 10729963 | 10727407 | ID=MS.gene047717 |
| chr5.3 | mRNA | 10727407 | 10729963 | 10727407 | ID=MS.gene047717.t1;Parent=MS.gene047717 |
| chr5.3 | exon | 10729961 | 10729963 | 10729961 | ID=MS.gene047717.t1.exon1;Parent=MS.gene047717.t1 |
| chr5.3 | CDS | 10729961 | 10729963 | 10729961 | ID=cds.MS.gene047717.t1;Parent=MS.gene047717.t1 |
| chr5.3 | exon | 10729129 | 10729206 | 10729129 | ID=MS.gene047717.t1.exon2;Parent=MS.gene047717.t1 |
| chr5.3 | CDS | 10729129 | 10729206 | 10729129 | ID=cds.MS.gene047717.t1;Parent=MS.gene047717.t1 |
| chr5.3 | exon | 10728863 | 10729043 | 10728863 | ID=MS.gene047717.t1.exon3;Parent=MS.gene047717.t1 |
| chr5.3 | CDS | 10728863 | 10729043 | 10728863 | ID=cds.MS.gene047717.t1;Parent=MS.gene047717.t1 |
| chr5.3 | exon | 10728316 | 10728413 | 10728316 | ID=MS.gene047717.t1.exon4;Parent=MS.gene047717.t1 |
| chr5.3 | CDS | 10728316 | 10728413 | 10728316 | ID=cds.MS.gene047717.t1;Parent=MS.gene047717.t1 |
| chr5.3 | exon | 10727407 | 10727844 | 10727407 | ID=MS.gene047717.t1.exon5;Parent=MS.gene047717.t1 |
| chr5.3 | CDS | 10727407 | 10727844 | 10727407 | ID=cds.MS.gene047717.t1;Parent=MS.gene047717.t1 |
| Gene Sequence |
| Protein sequence |
