Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81715.t1 | AEX20344.1 | 100 | 434 | 0 | 0 | 1 | 434 | 1 | 434 | 3.00E-247 | 864 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81715.t1 | Q40977 | 89.5 | 430 | 45 | 0 | 4 | 433 | 3 | 432 | 8.0e-225 | 780.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81715.t1 | H2EIY4 | 100.0 | 434 | 0 | 0 | 1 | 434 | 1 | 434 | 2.1e-247 | 864.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04915 | MS.gene81715 | 0.847624 | 1.03E-59 | -1.69E-46 |
| MS.gene049166 | MS.gene81715 | 0.801089 | 1.06E-48 | -1.69E-46 |
| MS.gene04917 | MS.gene81715 | 0.841014 | 6.14E-58 | -1.69E-46 |
| MS.gene049861 | MS.gene81715 | 0.834663 | 2.63E-56 | -1.69E-46 |
| MS.gene04991 | MS.gene81715 | -0.813477 | 2.51E-51 | -1.69E-46 |
| MS.gene050114 | MS.gene81715 | 0.832507 | 9.09E-56 | -1.69E-46 |
| MS.gene050317 | MS.gene81715 | 0.821729 | 3.46E-53 | -1.69E-46 |
| MS.gene050359 | MS.gene81715 | 0.803255 | 3.80E-49 | -1.69E-46 |
| MS.gene050623 | MS.gene81715 | -0.804749 | 1.86E-49 | -1.69E-46 |
| MS.gene050654 | MS.gene81715 | 0.812518 | 4.07E-51 | -1.69E-46 |
| MS.gene050763 | MS.gene81715 | 0.800122 | 1.67E-48 | -1.69E-46 |
| MS.gene051122 | MS.gene81715 | 0.83569 | 1.45E-56 | -1.69E-46 |
| MS.gene051184 | MS.gene81715 | 0.838 | 3.73E-57 | -1.69E-46 |
| MS.gene051831 | MS.gene81715 | 0.817417 | 3.33E-52 | -1.69E-46 |
| MS.gene051987 | MS.gene81715 | 0.843705 | 1.19E-58 | -1.69E-46 |
| MS.gene052176 | MS.gene81715 | 0.800191 | 1.62E-48 | -1.69E-46 |
| MS.gene052434 | MS.gene81715 | 0.812829 | 3.48E-51 | -1.69E-46 |
| MS.gene052580 | MS.gene81715 | 0.862567 | 4.63E-64 | -1.69E-46 |
| MS.gene053058 | MS.gene81715 | 0.813395 | 2.62E-51 | -1.69E-46 |
| MS.gene053216 | MS.gene81715 | 0.814434 | 1.54E-51 | -1.69E-46 |
| MS.gene05344 | MS.gene81715 | -0.801697 | 7.97E-49 | -1.69E-46 |
| MS.gene054379 | MS.gene81715 | 0.806136 | 9.53E-50 | -1.69E-46 |
| MS.gene055441 | MS.gene81715 | 0.819005 | 1.46E-52 | -1.69E-46 |
| MS.gene056181 | MS.gene81715 | 0.806468 | 8.11E-50 | -1.69E-46 |
| MS.gene056752 | MS.gene81715 | 0.808725 | 2.69E-50 | -1.69E-46 |
| MS.gene056787 | MS.gene81715 | 0.831381 | 1.72E-55 | -1.69E-46 |
| MS.gene056849 | MS.gene81715 | 0.964847 | 7.60E-124 | -1.69E-46 |
| MS.gene056975 | MS.gene81715 | 0.802055 | 6.73E-49 | -1.69E-46 |
| MS.gene057055 | MS.gene81715 | 0.807738 | 4.37E-50 | -1.69E-46 |
| MS.gene057451 | MS.gene81715 | -0.817671 | 2.92E-52 | -1.69E-46 |
| MS.gene057452 | MS.gene81715 | -0.847291 | 1.27E-59 | -1.69E-46 |
| MS.gene057999 | MS.gene81715 | 0.806077 | 9.80E-50 | -1.69E-46 |
| MS.gene058054 | MS.gene81715 | 0.816444 | 5.51E-52 | -1.69E-46 |
| MS.gene058055 | MS.gene81715 | 0.806827 | 6.81E-50 | -1.69E-46 |
| MS.gene058238 | MS.gene81715 | 0.810347 | 1.21E-50 | -1.69E-46 |
| MS.gene058278 | MS.gene81715 | 0.832405 | 9.63E-56 | -1.69E-46 |
| MS.gene058399 | MS.gene81715 | 0.800477 | 1.42E-48 | -1.69E-46 |
| MS.gene059050 | MS.gene81715 | 0.81703 | 4.07E-52 | -1.69E-46 |
| MS.gene059719 | MS.gene81715 | 0.803099 | 4.10E-49 | -1.69E-46 |
| MS.gene059872 | MS.gene81715 | -0.807923 | 3.99E-50 | -1.69E-46 |
| MS.gene060084 | MS.gene81715 | 0.867951 | 9.37E-66 | -1.69E-46 |
| MS.gene060297 | MS.gene81715 | 0.847504 | 1.11E-59 | -1.69E-46 |
| MS.gene060563 | MS.gene81715 | 0.820056 | 8.39E-53 | -1.69E-46 |
| MS.gene060851 | MS.gene81715 | 0.814022 | 1.90E-51 | -1.69E-46 |
| MS.gene060852 | MS.gene81715 | 0.815827 | 7.57E-52 | -1.69E-46 |
| MS.gene060869 | MS.gene81715 | 0.839126 | 1.91E-57 | -1.69E-46 |
| MS.gene060870 | MS.gene81715 | 0.821642 | 3.62E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene81715 | MS.gene054624 | PPI |
| MS.gene40946 | MS.gene81715 | PPI |
| MS.gene049230 | MS.gene81715 | PPI |
| MS.gene31111 | MS.gene81715 | PPI |
| MS.gene044004 | MS.gene81715 | PPI |
| MS.gene81715 | MS.gene48483 | PPI |
| MS.gene78401 | MS.gene81715 | PPI |
| MS.gene06344 | MS.gene81715 | PPI |
| MS.gene81715 | MS.gene67091 | PPI |
| MS.gene064542 | MS.gene81715 | PPI |
| MS.gene81715 | MS.gene044005 | PPI |
| MS.gene81715 | MS.gene67151 | PPI |
| MS.gene45537 | MS.gene81715 | PPI |
| MS.gene24365 | MS.gene81715 | PPI |
| MS.gene81715 | MS.gene062762 | PPI |
| MS.gene013259 | MS.gene81715 | PPI |
| MS.gene73119 | MS.gene81715 | PPI |
| MS.gene035805 | MS.gene81715 | PPI |
| MS.gene052072 | MS.gene81715 | PPI |
| MS.gene013003 | MS.gene81715 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81715.t1 | MTR_1g060620 | 97.926 | 434 | 9 | 0 | 1 | 434 | 1 | 434 | 0.0 | 863 |
| MS.gene81715.t1 | MTR_7g034715 | 55.374 | 428 | 186 | 3 | 4 | 431 | 3 | 425 | 1.61e-172 | 492 |
| MS.gene81715.t1 | MTR_8g098910 | 46.028 | 428 | 206 | 8 | 2 | 417 | 56 | 470 | 1.93e-118 | 355 |
| MS.gene81715.t1 | MTR_8g098910 | 46.028 | 428 | 206 | 8 | 2 | 417 | 47 | 461 | 2.07e-118 | 354 |
| MS.gene81715.t1 | MTR_8g098910 | 46.731 | 413 | 195 | 8 | 2 | 402 | 56 | 455 | 2.32e-115 | 346 |
| MS.gene81715.t1 | MTR_8g098910 | 46.731 | 413 | 195 | 8 | 2 | 402 | 47 | 446 | 2.40e-115 | 345 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene81715.t1 | AT3G52880 | 78.291 | 433 | 94 | 0 | 1 | 433 | 1 | 433 | 0.0 | 688 |
| MS.gene81715.t1 | AT3G52880 | 72.747 | 466 | 95 | 1 | 1 | 434 | 1 | 466 | 0.0 | 672 |
| MS.gene81715.t1 | AT5G03630 | 74.651 | 430 | 109 | 0 | 3 | 432 | 4 | 433 | 0.0 | 650 |
| MS.gene81715.t1 | AT3G09940 | 65.820 | 433 | 147 | 1 | 3 | 434 | 4 | 436 | 0.0 | 570 |
| MS.gene81715.t1 | AT3G09940 | 65.127 | 433 | 142 | 2 | 3 | 434 | 4 | 428 | 0.0 | 558 |
| MS.gene81715.t1 | AT3G27820 | 55.012 | 429 | 186 | 4 | 4 | 431 | 3 | 425 | 1.10e-158 | 457 |
| MS.gene81715.t1 | AT1G63940 | 45.902 | 427 | 208 | 7 | 1 | 417 | 56 | 469 | 7.62e-123 | 366 |
| MS.gene81715.t1 | AT1G63940 | 45.902 | 427 | 208 | 7 | 1 | 417 | 49 | 462 | 7.86e-123 | 365 |
| MS.gene81715.t1 | AT1G63940 | 44.965 | 427 | 208 | 7 | 1 | 417 | 49 | 458 | 1.71e-118 | 354 |
| MS.gene81715.t1 | AT1G63940 | 47.312 | 372 | 178 | 6 | 1 | 362 | 49 | 412 | 1.26e-108 | 327 |
Find 115 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATCATCAAAGCCTAATTT+TGG | 0.178444 | 1.3:-43995458 | MS.gene81715:CDS |
| GCAGCTCCTGCTAGACTTCC+TGG | 0.182558 | 1.3:-43997231 | MS.gene81715:intron |
| ATCCAGTATGTTCCAAAATT+AGG | 0.241603 | 1.3:+43995446 | None:intergenic |
| CCTTTCTCATTGTACCATTC+TGG | 0.242015 | 1.3:+43997168 | None:intergenic |
| AAAATATCTTTAAAATTTAC+TGG | 0.242138 | 1.3:+43995289 | None:intergenic |
| GAAGTTATATACCGCTTCTT+TGG | 0.253487 | 1.3:+43998321 | None:intergenic |
| CACTTACTGCACCAAGGTTC+TGG | 0.254429 | 1.3:+43996552 | None:intergenic |
| TGAGGGATATTATGCAAATA+AGG | 0.254901 | 1.3:-43996400 | MS.gene81715:CDS |
| ATTAAAGACGGGAAAGTTAT+TGG | 0.257644 | 1.3:-43995425 | MS.gene81715:CDS |
| CAAACTTACACTCCGGAAAA+AGG | 0.272710 | 1.3:+43997516 | None:intergenic |
| GTTGGTGACACAGTGCTATT+TGG | 0.278134 | 1.3:-43995494 | MS.gene81715:CDS |
| TCCTGCCTCTGCTGCAATGA+TGG | 0.311126 | 1.3:+43995598 | None:intergenic |
| CTTCAACCTGCCCTTTGAAT+AGG | 0.313300 | 1.3:+43996145 | None:intergenic |
| ATGGGAAAGCTGTGGTTGTT+GGG | 0.325418 | 1.3:-43996644 | MS.gene81715:CDS |
| TTCAACCTGCCCTTTGAATA+GGG | 0.331938 | 1.3:+43996146 | None:intergenic |
| AGCAAGGGAGTTTGTGAAAC+AGG | 0.334221 | 1.3:-43998374 | MS.gene81715:CDS |
| GTTATAAGGTTGACCGATTT+CGG | 0.348452 | 1.3:-43996756 | MS.gene81715:CDS |
| AGGAGTTCCGCCCTCCAAAA+AGG | 0.369207 | 1.3:+43995400 | None:intergenic |
| GCAATAGCTTTGTTCTCATC+AGG | 0.370142 | 1.3:+43995380 | None:intergenic |
| TACCTCTCCATCGGAATTAG+AGG | 0.382642 | 1.3:+43996338 | None:intergenic |
| GAGGGATATTATGCAAATAA+GGG | 0.399575 | 1.3:-43996399 | MS.gene81715:CDS |
| CCCGCTCATTTGATCTGTCT+TGG | 0.402893 | 1.3:-43995535 | MS.gene81715:CDS |
| AATGGGAAAGCTGTGGTTGT+TGG | 0.405868 | 1.3:-43996645 | MS.gene81715:CDS |
| AGCTCCTTCTACACCGAAAT+CGG | 0.406909 | 1.3:+43996743 | None:intergenic |
| GATTGCCTCGTACAATTTGT+CGG | 0.408450 | 1.3:+43996680 | None:intergenic |
| TTCCATACCTGTGTTGGAAG+TGG | 0.409257 | 1.3:-43997207 | MS.gene81715:CDS |
| GGGAGTTAAGCCTGGGGAGC+TGG | 0.410028 | 1.3:-43998353 | MS.gene81715:CDS |
| TTGACCGATTTCGGTGTAGA+AGG | 0.410797 | 1.3:-43996747 | MS.gene81715:CDS |
| AATGAGCGGGAATAGAAGTA+TGG | 0.414692 | 1.3:+43995548 | None:intergenic |
| CAGCTCCTGCTAGACTTCCT+GGG | 0.431228 | 1.3:-43997230 | MS.gene81715:CDS |
| TCCATACCTGTGTTGGAAGT+GGG | 0.433327 | 1.3:-43997206 | MS.gene81715:CDS |
| AACATTCAAATACCAGACTT+TGG | 0.436365 | 1.3:-43996894 | MS.gene81715:CDS |
| GATATGATTGCCAGCTCCCC+AGG | 0.439711 | 1.3:+43998343 | None:intergenic |
| CTTAGAGCAGGACGTTCATA+AGG | 0.442351 | 1.3:+43997548 | None:intergenic |
| TGCTCGCAAATCAGCTGAGC+AGG | 0.448272 | 1.3:-43995884 | MS.gene81715:CDS |
| AAATTAGGCTTTGATGATGC+AGG | 0.450521 | 1.3:+43995461 | None:intergenic |
| CAGACTTTGGTTATTGCAAC+GGG | 0.454674 | 1.3:-43996881 | MS.gene81715:CDS |
| GTGAAACAGGGAGTTAAGCC+TGG | 0.456583 | 1.3:-43998361 | MS.gene81715:CDS |
| ACTAAAGGACGGAAGGGTAC+TGG | 0.464010 | 1.3:-43996214 | MS.gene81715:CDS |
| GATATCGTTGTTGTTGGTGT+TGG | 0.464393 | 1.3:-43996186 | MS.gene81715:CDS |
| CTCAAATATCCCTATTCAAA+GGG | 0.465069 | 1.3:-43996155 | MS.gene81715:CDS |
| ATTAAAGGAACTGTTGCTAC+TGG | 0.465914 | 1.3:-43996366 | MS.gene81715:CDS |
| AGAGGAGAAGGGTGGAATCA+AGG | 0.470693 | 1.3:-43996124 | MS.gene81715:intron |
| ACTTACTGCACCAAGGTTCT+GGG | 0.472875 | 1.3:+43996553 | None:intergenic |
| ACCTCATTGTACAATTTCAA+AGG | 0.474444 | 1.3:+43995931 | None:intergenic |
| GCAATCAAAGGAAAGAAGAA+TGG | 0.475038 | 1.3:-43996663 | MS.gene81715:CDS |
| ATCGTTGTTGTTGGTGTTGG+AGG | 0.475278 | 1.3:-43996183 | MS.gene81715:CDS |
| TGGGAAAGCTGTGGTTGTTG+GGG | 0.478224 | 1.3:-43996643 | MS.gene81715:CDS |
| AAATCTCTGACTAGTGCAAA+AGG | 0.484247 | 1.3:-43996920 | MS.gene81715:CDS |
| GATCTGTCTTGGCAATTCTA+CGG | 0.487729 | 1.3:-43995524 | MS.gene81715:CDS |
| CAATCAAAGGAAAGAAGAAT+GGG | 0.494313 | 1.3:-43996662 | MS.gene81715:CDS |
| CCTCATTGTACAATTTCAAA+GGG | 0.496085 | 1.3:+43995932 | None:intergenic |
| ATCAGCTGAGCAGGCTGCGA+AGG | 0.503643 | 1.3:-43995875 | MS.gene81715:intron |
| CCCCACTTCCAACACAGGTA+TGG | 0.504218 | 1.3:+43997205 | None:intergenic |
| CCTGGGTTCCATACCTGTGT+TGG | 0.504798 | 1.3:-43997213 | MS.gene81715:CDS |
| CCTCAAATATCCCTATTCAA+AGG | 0.504920 | 1.3:-43996156 | MS.gene81715:CDS |
| GCCATCATTGCAGCAGAGGC+AGG | 0.506274 | 1.3:-43995599 | MS.gene81715:CDS |
| TGATTCACATCCTTCACTGC+AGG | 0.508882 | 1.3:+43995338 | None:intergenic |
| AGGGCAGGTTGAAGAGGAGA+AGG | 0.510981 | 1.3:-43996136 | MS.gene81715:CDS |
| CCGTTGCAATAACCAAAGTC+TGG | 0.512143 | 1.3:+43996882 | None:intergenic |
| CAGGTTGAAGAGGAGAAGGG+TGG | 0.514261 | 1.3:-43996132 | MS.gene81715:CDS |
| TTCAAGTACATCATCGTTGG+TGG | 0.514305 | 1.3:-43998889 | MS.gene81715:CDS |
| CCCTTTGAAATTGTACAATG+AGG | 0.515845 | 1.3:-43995932 | MS.gene81715:CDS |
| TGAAATAGCTGCGTTCTATG+AGG | 0.518052 | 1.3:-43996418 | MS.gene81715:CDS |
| CCTTTGAATAGGGATATTTG+AGG | 0.518462 | 1.3:+43996156 | None:intergenic |
| CCAGACTTTGGTTATTGCAA+CGG | 0.522695 | 1.3:-43996882 | MS.gene81715:CDS |
| AAGTACATCATCGTTGGTGG+TGG | 0.527872 | 1.3:-43998886 | MS.gene81715:CDS |
| CCATACCTGTGTTGGAAGTG+GGG | 0.529148 | 1.3:-43997205 | MS.gene81715:CDS |
| AATATCCCTATTCAAAGGGC+AGG | 0.530083 | 1.3:-43996151 | MS.gene81715:CDS |
| GAAGCAGATATCGTTGTTGT+TGG | 0.531051 | 1.3:-43996192 | MS.gene81715:CDS |
| TGAAACAGGGAGTTAAGCCT+GGG | 0.531517 | 1.3:-43998360 | MS.gene81715:CDS |
| AGGTAAGCCTTGCTTAGAGC+AGG | 0.532956 | 1.3:+43997536 | None:intergenic |
| GGAACATACTGGATTAAAGA+CGG | 0.545200 | 1.3:-43995437 | MS.gene81715:CDS |
| GGTAAAAGAAGTCAAACTAA+AGG | 0.545234 | 1.3:-43996229 | MS.gene81715:CDS |
| TGGAACCCAGGAAGTCTAGC+AGG | 0.547573 | 1.3:+43997225 | None:intergenic |
| GAACATACTGGATTAAAGAC+GGG | 0.548378 | 1.3:-43995436 | MS.gene81715:CDS |
| CCAGAATGGTACAATGAGAA+AGG | 0.552633 | 1.3:-43997168 | MS.gene81715:intron |
| AAGTCAAACTAAAGGACGGA+AGG | 0.553804 | 1.3:-43996221 | MS.gene81715:CDS |
| GAAATAGCTGCGTTCTATGA+GGG | 0.560533 | 1.3:-43996417 | MS.gene81715:CDS |
| GCCAAGACAGATCAAATGAG+CGG | 0.563154 | 1.3:+43995534 | None:intergenic |
| AAGAGCATTGCCTGCAGTGA+AGG | 0.564265 | 1.3:-43995348 | MS.gene81715:CDS |
| GTTTCCAATGTATATGCTGT+TGG | 0.565674 | 1.3:-43995970 | MS.gene81715:CDS |
| TCATTCAAGTACATCATCGT+TGG | 0.568162 | 1.3:-43998892 | MS.gene81715:CDS |
| CCAAGACAGATCAAATGAGC+GGG | 0.570191 | 1.3:+43995535 | None:intergenic |
| GTGAATCAACTTGCAAAGGA+AGG | 0.570354 | 1.3:-43995323 | MS.gene81715:CDS |
| GGATGTGAATCAACTTGCAA+AGG | 0.570956 | 1.3:-43995327 | MS.gene81715:CDS |
| ATTCAAAGGGCAGGTTGAAG+AGG | 0.578439 | 1.3:-43996142 | MS.gene81715:CDS |
| GAGAAAGATTGCTTCCAGAA+TGG | 0.579572 | 1.3:-43997182 | MS.gene81715:CDS |
| GCAGGCCATCATTGCAGCAG+AGG | 0.583036 | 1.3:-43995603 | MS.gene81715:intron |
| AAATTGTACGAGGCAATCAA+AGG | 0.584541 | 1.3:-43996675 | MS.gene81715:CDS |
| GGATTCACCTCTAATTCCGA+TGG | 0.584598 | 1.3:-43996345 | MS.gene81715:CDS |
| GGGAAAGCTGTGGTTGTTGG+GGG | 0.584691 | 1.3:-43996642 | MS.gene81715:CDS |
| AATTGTAGGGTTATGCAGCA+AGG | 0.585751 | 1.3:-43998390 | MS.gene81715:intron |
| CAATTCTACGGCGACAACGT+TGG | 0.592292 | 1.3:-43995512 | MS.gene81715:CDS |
| AGGGATATTATGCAAATAAG+GGG | 0.599658 | 1.3:-43996398 | MS.gene81715:CDS |
| ATTGTAGGGTTATGCAGCAA+GGG | 0.600524 | 1.3:-43998389 | MS.gene81715:intron |
| ATGCGGCCATACCTCTCCAT+CGG | 0.604691 | 1.3:+43996329 | None:intergenic |
| CACCTCTAATTCCGATGGAG+AGG | 0.604818 | 1.3:-43996340 | MS.gene81715:intron |
| ATCGCCAACAGCATATACAT+TGG | 0.608592 | 1.3:+43995966 | None:intergenic |
| CAATAATATTGATGTTACCA+TGG | 0.614036 | 1.3:-43996580 | MS.gene81715:CDS |
| CATACCTGTGTTGGAAGTGG+GGG | 0.614897 | 1.3:-43997204 | MS.gene81715:CDS |
| CCATGGTCTACCCAGAACCT+TGG | 0.617370 | 1.3:-43996563 | MS.gene81715:CDS |
| GGGCAGGTTGAAGAGGAGAA+GGG | 0.619159 | 1.3:-43996135 | MS.gene81715:CDS |
| GGCAATCATATCCAAAGAAG+CGG | 0.620227 | 1.3:-43998332 | MS.gene81715:intron |
| GCAAGGGAGTTTGTGAAACA+GGG | 0.620845 | 1.3:-43998373 | MS.gene81715:CDS |
| CCAACACAGGTATGGAACCC+AGG | 0.626347 | 1.3:+43997213 | None:intergenic |
| CCAAGGTTCTGGGTAGACCA+TGG | 0.634221 | 1.3:+43996563 | None:intergenic |
| AAAGAAGTCAAACTAAAGGA+CGG | 0.634551 | 1.3:-43996225 | MS.gene81715:CDS |
| TGAACGTCCTGCTCTAAGCA+AGG | 0.638367 | 1.3:-43997543 | MS.gene81715:CDS |
| AGTCAAACTAAAGGACGGAA+GGG | 0.640917 | 1.3:-43996220 | MS.gene81715:CDS |
| AAAGAAGAATGGGAAAGCTG+TGG | 0.672130 | 1.3:-43996652 | MS.gene81715:CDS |
| GGGATATTATGCAAATAAGG+GGG | 0.714196 | 1.3:-43996397 | MS.gene81715:CDS |
| AATGTCCACTTACTGCACCA+AGG | 0.718065 | 1.3:+43996546 | None:intergenic |
| TGATGCCGACAAATTGTACG+AGG | 0.731621 | 1.3:-43996685 | MS.gene81715:CDS |
| GAAACAGGGAGTTAAGCCTG+GGG | 0.761504 | 1.3:-43998359 | MS.gene81715:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAGAATTAAAATAAAATAA+GGG | + | chr1.3:43997079-43997098 | None:intergenic | 10.0% |
| !!! | CAAAAATATATTTTATTTGA+GGG | - | chr1.3:43997487-43997506 | MS.gene81715:intron | 10.0% |
| !!! | CATATCAAATTAAATTTTTT+TGG | - | chr1.3:43995764-43995783 | MS.gene81715:intron | 10.0% |
| !! | AGAATTAAAATAAAATAAGG+GGG | + | chr1.3:43997077-43997096 | None:intergenic | 15.0% |
| !! | AGATAAGTAAATATAAGAAT+GGG | - | chr1.3:43997157-43997176 | MS.gene81715:intron | 15.0% |
| !! | ATAAAACTTTAAACTTCATA+TGG | + | chr1.3:43996028-43996047 | None:intergenic | 15.0% |
| !! | CACAGAATTAAAATAAAATA+AGG | + | chr1.3:43997080-43997099 | None:intergenic | 15.0% |
| !! | CAGAATTAAAATAAAATAAG+GGG | + | chr1.3:43997078-43997097 | None:intergenic | 15.0% |
| !! | CTTCATTTAATTCTTATATT+TGG | - | chr1.3:43995931-43995950 | MS.gene81715:CDS | 15.0% |
| !!! | ATTTGGTTATACTTTTTTAA+TGG | - | chr1.3:43995948-43995967 | MS.gene81715:CDS | 15.0% |
| !!! | CCAAAAATATATTTTATTTG+AGG | - | chr1.3:43997486-43997505 | MS.gene81715:intron | 15.0% |
| !!! | CCTCAAATAAAATATATTTT+TGG | + | chr1.3:43997489-43997508 | None:intergenic | 15.0% |
| !!! | TTTTAATTCTGTGTTATATT+TGG | - | chr1.3:43997087-43997106 | MS.gene81715:intron | 15.0% |
| !!! | TTTTGAATTATATTTAGTGA+AGG | - | chr1.3:43996837-43996856 | MS.gene81715:intron | 15.0% |
| !! | AAAAAATTCACAAGAATCTA+CGG | + | chr1.3:43995416-43995435 | None:intergenic | 20.0% |
| !! | AAGTTAAGCAAAATTTGATT+AGG | + | chr1.3:43997939-43997958 | None:intergenic | 20.0% |
| !! | ATGAAGAAAAAAAACAAAAG+TGG | + | chr1.3:43995917-43995936 | None:intergenic | 20.0% |
| !! | ATTGAAACAAGAATAAAGAT+TGG | + | chr1.3:43995368-43995387 | None:intergenic | 20.0% |
| !! | GAGATAAGTAAATATAAGAA+TGG | - | chr1.3:43997156-43997175 | MS.gene81715:intron | 20.0% |
| !! | GATATTAGAAATGTTACATT+CGG | - | chr1.3:43997366-43997385 | MS.gene81715:intron | 20.0% |
| !! | TCAAAAAAATTGATTGTGAT+TGG | - | chr1.3:43995713-43995732 | MS.gene81715:intron | 20.0% |
| !! | TGTAACAATTCTATGTTAAA+GGG | - | chr1.3:43995462-43995481 | MS.gene81715:CDS | 20.0% |
| !! | TTTGTGAGTAAATATTCTAT+AGG | - | chr1.3:43996192-43996211 | MS.gene81715:CDS | 20.0% |
| !!! | AAATATATTTTATTTGAGGG+AGG | - | chr1.3:43997490-43997509 | MS.gene81715:intron | 20.0% |
| !!! | AATCACAATCAATTTTTTTG+AGG | + | chr1.3:43995714-43995733 | None:intergenic | 20.0% |
| !!! | ATCACAATCAATTTTTTTGA+GGG | + | chr1.3:43995713-43995732 | None:intergenic | 20.0% |
| !!! | ATGGTTTTCAGAATAAATAT+TGG | - | chr1.3:43997110-43997129 | MS.gene81715:intron | 20.0% |
| !!! | GTAAAAATTCGAAATTTTTC+AGG | + | chr1.3:43996452-43996471 | None:intergenic | 20.0% |
| !!! | TACTAATAATTTTGTTTTGC+AGG | - | chr1.3:43997424-43997443 | MS.gene81715:intron | 20.0% |
| !!! | TGGTTTTCAGAATAAATATT+GGG | - | chr1.3:43997111-43997130 | MS.gene81715:intron | 20.0% |
| !!! | TTTTTTGGATTGAATAATTG+AGG | - | chr1.3:43995779-43995798 | MS.gene81715:intron | 20.0% |
| ! | AACCAAAATGATTTCAAAAC+TGG | + | chr1.3:43998449-43998468 | None:intergenic | 25.0% |
| ! | AATTCTGTGTTATATTTGGA+TGG | - | chr1.3:43997091-43997110 | MS.gene81715:intron | 25.0% |
| ! | ACAAGAATAAAGATTGGAAA+AGG | + | chr1.3:43995362-43995381 | None:intergenic | 25.0% |
| ! | ACCAAAATGATTTCAAAACT+GGG | + | chr1.3:43998448-43998467 | None:intergenic | 25.0% |
| ! | AGATACATATCATGAAATTC+AGG | + | chr1.3:43996364-43996383 | None:intergenic | 25.0% |
| ! | ATCCAACTTAATGTTACAAT+TGG | - | chr1.3:43996942-43996961 | MS.gene81715:CDS | 25.0% |
| ! | ATCCAATTGTAACATTAAGT+TGG | + | chr1.3:43996947-43996966 | None:intergenic | 25.0% |
| ! | CAATAATATTGATGTTACCA+TGG | - | chr1.3:43997622-43997641 | MS.gene81715:intron | 25.0% |
| ! | CTGTAACAATTCTATGTTAA+AGG | - | chr1.3:43995461-43995480 | MS.gene81715:CDS | 25.0% |
| ! | TAACATTTCTAATATCAGCA+AGG | + | chr1.3:43997362-43997381 | None:intergenic | 25.0% |
| ! | TAATTAACCCATAACAGAAT+GGG | + | chr1.3:43996759-43996778 | None:intergenic | 25.0% |
| ! | TATGTTAAAGGGATTAGAAT+CGG | - | chr1.3:43995473-43995492 | MS.gene81715:CDS | 25.0% |
| ! | TTAATTAACCCATAACAGAA+TGG | + | chr1.3:43996760-43996779 | None:intergenic | 25.0% |
| !! | AATTTTTCACAGTATTCACA+AGG | + | chr1.3:43995521-43995540 | None:intergenic | 25.0% |
| !! | ACGTGGTACAAAATTTTAAA+AGG | + | chr1.3:43996556-43996575 | None:intergenic | 25.0% |
| !! | ATTTTGTACCACGTATTTAT+TGG | - | chr1.3:43996562-43996581 | MS.gene81715:CDS | 25.0% |
| !! | TATCAATGATACATTTGTTG+TGG | - | chr1.3:43998179-43998198 | MS.gene81715:intron | 25.0% |
| !!! | ACTTTTTTAATGGTGATAGT+GGG | - | chr1.3:43995958-43995977 | MS.gene81715:CDS | 25.0% |
| !!! | AGGTGTTTTTTGAAATTGTA+GGG | - | chr1.3:43995799-43995818 | MS.gene81715:intron | 25.0% |
| !!! | ATGTGCTATTTAAACTTCAA+TGG | + | chr1.3:43996900-43996919 | None:intergenic | 25.0% |
| !!! | ATTTTGTTTTGCAGGTTATA+AGG | - | chr1.3:43997432-43997451 | MS.gene81715:intron | 25.0% |
| !!! | GGACATATTTTTGCATTTTT+AGG | - | chr1.3:43996506-43996525 | MS.gene81715:intron | 25.0% |
| !!! | GTATGACTTTTAAAGTAGAA+AGG | - | chr1.3:43995630-43995649 | MS.gene81715:intron | 25.0% |
| !!! | TACTTTTTTAATGGTGATAG+TGG | - | chr1.3:43995957-43995976 | MS.gene81715:CDS | 25.0% |
| !!! | TTTGCTTTGCTTTGAATTTT+AGG | - | chr1.3:43995561-43995580 | MS.gene81715:CDS | 25.0% |
| !!! | TTTTTTTTTTGCTTTCATGC+AGG | - | chr1.3:43998581-43998600 | MS.gene81715:intron | 25.0% |
| AAAGAAGTCAAACTAAAGGA+CGG | - | chr1.3:43997977-43997996 | MS.gene81715:intron | 30.0% | |
| AAATTGAACCAATGATTGCA+GGG | - | chr1.3:43997211-43997230 | MS.gene81715:CDS | 30.0% | |
| AACATTCAAATACCAGACTT+TGG | - | chr1.3:43997308-43997327 | MS.gene81715:intron | 30.0% | |
| AATTAACCCATAACAGAATG+GGG | + | chr1.3:43996758-43996777 | None:intergenic | 30.0% | |
| ACCTCATTGTACAATTTCAA+AGG | + | chr1.3:43998274-43998293 | None:intergenic | 30.0% | |
| AGGGATATTATGCAAATAAG+GGG | - | chr1.3:43997804-43997823 | MS.gene81715:intron | 30.0% | |
| AGTAATTAGTATGCGCTAAA+AGG | + | chr1.3:43997408-43997427 | None:intergenic | 30.0% | |
| AGTGAAGGTTATGTTATCTT+GGG | - | chr1.3:43996852-43996871 | MS.gene81715:intron | 30.0% | |
| ATCCAGTATGTTCCAAAATT+AGG | + | chr1.3:43998759-43998778 | None:intergenic | 30.0% | |
| ATGAAATTCAGGAAATAGTG+TGG | + | chr1.3:43996353-43996372 | None:intergenic | 30.0% | |
| ATTAAAGACGGGAAAGTTAT+TGG | - | chr1.3:43998777-43998796 | MS.gene81715:intron | 30.0% | |
| ATTTCAGCAGTAAAAAGTCT+TGG | + | chr1.3:43997770-43997789 | None:intergenic | 30.0% | |
| CAAAAATATGTCCATCACAA+GGG | + | chr1.3:43996499-43996518 | None:intergenic | 30.0% | |
| CAATCAAAGGAAAGAAGAAT+GGG | - | chr1.3:43997540-43997559 | MS.gene81715:CDS | 30.0% | |
| CACAAAGGTAAGATATGTAA+GGG | + | chr1.3:43996625-43996644 | None:intergenic | 30.0% | |
| CCTCATTGTACAATTTCAAA+GGG | + | chr1.3:43998273-43998292 | None:intergenic | 30.0% | |
| CTCAAATATCCCTATTCAAA+GGG | - | chr1.3:43998047-43998066 | MS.gene81715:intron | 30.0% | |
| CTTAATAAGACACTTCCATA+TGG | + | chr1.3:43998526-43998545 | None:intergenic | 30.0% | |
| GAGGGATATTATGCAAATAA+GGG | - | chr1.3:43997803-43997822 | MS.gene81715:intron | 30.0% | |
| GGTAAAAGAAGTCAAACTAA+AGG | - | chr1.3:43997973-43997992 | MS.gene81715:intron | 30.0% | |
| GTAGTATTATGAAGATCGAT+CGG | + | chr1.3:43995394-43995413 | None:intergenic | 30.0% | |
| TAAATTGAACCAATGATTGC+AGG | - | chr1.3:43997210-43997229 | MS.gene81715:CDS | 30.0% | |
| TACAATGAGAAAGGTGAATT+TGG | - | chr1.3:43997043-43997062 | MS.gene81715:intron | 30.0% | |
| TAGTGAAGGTTATGTTATCT+TGG | - | chr1.3:43996851-43996870 | MS.gene81715:intron | 30.0% | |
| TGAGGGATATTATGCAAATA+AGG | - | chr1.3:43997802-43997821 | MS.gene81715:intron | 30.0% | |
| TGGAGAAGGATAAATATGTA+GGG | + | chr1.3:43998363-43998382 | None:intergenic | 30.0% | |
| TTGGAGAAGGATAAATATGT+AGG | + | chr1.3:43998364-43998383 | None:intergenic | 30.0% | |
| ! | AAAGACATGTATCCTTTTTC+CGG | - | chr1.3:43998393-43998412 | MS.gene81715:intron | 30.0% |
| ! | ACATGTCTTTTGTGCATAAT+TGG | + | chr1.3:43998383-43998402 | None:intergenic | 30.0% |
| ! | CGTAAAACTTTTGACACTAT+TGG | - | chr1.3:43995608-43995627 | MS.gene81715:intron | 30.0% |
| !!! | ACCCAGTTTTGAAATCATTT+TGG | - | chr1.3:43998444-43998463 | MS.gene81715:intron | 30.0% |
| !!! | CTTTTTTAATGGTGATAGTG+GGG | - | chr1.3:43995959-43995978 | MS.gene81715:CDS | 30.0% |
| !!! | GAGGTGTTTTTTGAAATTGT+AGG | - | chr1.3:43995798-43995817 | MS.gene81715:intron | 30.0% |
| !!! | GGAAACATTTGTTTTGAAGA+AGG | + | chr1.3:43998218-43998237 | None:intergenic | 30.0% |
| !!! | TGAAATCATTTTGGTTCCTT+AGG | - | chr1.3:43998453-43998472 | MS.gene81715:intron | 30.0% |
| AAATCTCTGACTAGTGCAAA+AGG | - | chr1.3:43997282-43997301 | MS.gene81715:intron | 35.0% | |
| AAATTGTACGAGGCAATCAA+AGG | - | chr1.3:43997527-43997546 | MS.gene81715:CDS | 35.0% | |
| AAGGGGGTCAATATCATTAA+AGG | - | chr1.3:43997821-43997840 | MS.gene81715:intron | 35.0% | |
| AATAAGACACTTCCATATGG+AGG | + | chr1.3:43998523-43998542 | None:intergenic | 35.0% | |
| AATTGAACCAATGATTGCAG+GGG | - | chr1.3:43997212-43997231 | MS.gene81715:CDS | 35.0% | |
| ACAGAATGGGGGAAAATTAA+AGG | + | chr1.3:43996746-43996765 | None:intergenic | 35.0% | |
| AGCATTACAAACTTACACTC+CGG | + | chr1.3:43996696-43996715 | None:intergenic | 35.0% | |
| ATGATTTCAAAACTGGGTGT+CGG | + | chr1.3:43998442-43998461 | None:intergenic | 35.0% | |
| ATTAAAGGAACTGTTGCTAC+TGG | - | chr1.3:43997836-43997855 | MS.gene81715:intron | 35.0% | |
| ATTAACCCATAACAGAATGG+GGG | + | chr1.3:43996757-43996776 | None:intergenic | 35.0% | |
| CAAAAATCCATAACTGCACA+AGG | + | chr1.3:43996593-43996612 | None:intergenic | 35.0% | |
| CCTCAAATATCCCTATTCAA+AGG | - | chr1.3:43998046-43998065 | MS.gene81715:intron | 35.0% | |
| CCTTTGAATAGGGATATTTG+AGG | + | chr1.3:43998049-43998068 | None:intergenic | 35.0% | |
| GAACATACTGGATTAAAGAC+GGG | - | chr1.3:43998766-43998785 | MS.gene81715:intron | 35.0% | |
| GAAGTTATATACCGCTTCTT+TGG | + | chr1.3:43995884-43995903 | None:intergenic | 35.0% | |
| GAGAAAAACACAAGAGGATA+AGG | + | chr1.3:43996285-43996304 | None:intergenic | 35.0% | |
| GCAAAAATATGTCCATCACA+AGG | + | chr1.3:43996500-43996519 | None:intergenic | 35.0% | |
| GCAATCAAAGGAAAGAAGAA+TGG | - | chr1.3:43997539-43997558 | MS.gene81715:CDS | 35.0% | |
| GCACAAAGGTAAGATATGTA+AGG | + | chr1.3:43996626-43996645 | None:intergenic | 35.0% | |
| GGAAAATTAAAGGAGGAAAG+GGG | + | chr1.3:43996736-43996755 | None:intergenic | 35.0% | |
| GGAACATACTGGATTAAAGA+CGG | - | chr1.3:43998765-43998784 | MS.gene81715:intron | 35.0% | |
| GGGAAAATTAAAGGAGGAAA+GGG | + | chr1.3:43996737-43996756 | None:intergenic | 35.0% | |
| GGGATATTATGCAAATAAGG+GGG | - | chr1.3:43997805-43997824 | MS.gene81715:intron | 35.0% | |
| GGGTTATTGTGTCAAGTTAA+AGG | - | chr1.3:43997131-43997150 | MS.gene81715:intron | 35.0% | |
| GTTTCCAATGTATATGCTGT+TGG | - | chr1.3:43998232-43998251 | MS.gene81715:intron | 35.0% | |
| TAAATTTCTCGGGACGAATA+TGG | + | chr1.3:43996411-43996430 | None:intergenic | 35.0% | |
| TACATATCTTACCTTTGTGC+AGG | - | chr1.3:43996626-43996645 | MS.gene81715:CDS | 35.0% | |
| TCATTCAAGTACATCATCGT+TGG | - | chr1.3:43995310-43995329 | MS.gene81715:CDS | 35.0% | |
| TGTCCCATCACTAAATTTCT+CGG | + | chr1.3:43996422-43996441 | None:intergenic | 35.0% | |
| TTAACTTTCATCCATCTGTC+AGG | - | chr1.3:43997952-43997971 | MS.gene81715:intron | 35.0% | |
| TTGATGGAGAAAAACACAAG+AGG | + | chr1.3:43996291-43996310 | None:intergenic | 35.0% | |
| ! | AACATGTGCATGTTGTTTGA+AGG | - | chr1.3:43995986-43996005 | MS.gene81715:CDS | 35.0% |
| ! | AATTTTCCCCCATTCTGTTA+TGG | - | chr1.3:43996748-43996767 | MS.gene81715:CDS | 35.0% |
| ! | ACATGCACAAACTTCTTTTC+TGG | - | chr1.3:43998496-43998515 | MS.gene81715:intron | 35.0% |
| ! | ACATGTGCATGTTGTTTGAA+GGG | - | chr1.3:43995987-43996006 | MS.gene81715:CDS | 35.0% |
| ! | ATTTTCCCCCATTCTGTTAT+GGG | - | chr1.3:43996749-43996768 | MS.gene81715:CDS | 35.0% |
| ! | CTTTTGTGCATAATTGGAGA+AGG | + | chr1.3:43998377-43998396 | None:intergenic | 35.0% |
| ! | GCATCATCAAAGCCTAATTT+TGG | - | chr1.3:43998744-43998763 | MS.gene81715:intron | 35.0% |
| ! | GTTATAAGGTTGACCGATTT+CGG | - | chr1.3:43997446-43997465 | MS.gene81715:intron | 35.0% |
| !! | AAATTAGGCTTTGATGATGC+AGG | + | chr1.3:43998744-43998763 | None:intergenic | 35.0% |
| !! | ACTTTCAACGTCTTGTTTGA+TGG | + | chr1.3:43996307-43996326 | None:intergenic | 35.0% |
| !! | CCCTTTGAAATTGTACAATG+AGG | - | chr1.3:43998270-43998289 | MS.gene81715:intron | 35.0% |
| !! | GAAAGTTATTGGTGCCTTTT+TGG | - | chr1.3:43998788-43998807 | MS.gene81715:intron | 35.0% |
| !!! | AGCCTAATTTTGGAACATAC+TGG | - | chr1.3:43998754-43998773 | MS.gene81715:intron | 35.0% |
| AAAGAAGAATGGGAAAGCTG+TGG | - | chr1.3:43997550-43997569 | MS.gene81715:CDS | 40.0% | |
| AAGTCAAACTAAAGGACGGA+AGG | - | chr1.3:43997981-43998000 | MS.gene81715:intron | 40.0% | |
| AATATCCCTATTCAAAGGGC+AGG | - | chr1.3:43998051-43998070 | MS.gene81715:intron | 40.0% | |
| AATGAGCGGGAATAGAAGTA+TGG | + | chr1.3:43998657-43998676 | None:intergenic | 40.0% | |
| AATTGTAGGGTTATGCAGCA+AGG | - | chr1.3:43995812-43995831 | MS.gene81715:intron | 40.0% | |
| AGTCAAACTAAAGGACGGAA+GGG | - | chr1.3:43997982-43998001 | MS.gene81715:intron | 40.0% | |
| ATCGCCAACAGCATATACAT+TGG | + | chr1.3:43998239-43998258 | None:intergenic | 40.0% | |
| ATGCACAAATTCGCATGAGT+GGG | + | chr1.3:43997705-43997724 | None:intergenic | 40.0% | |
| ATTGTAGGGTTATGCAGCAA+GGG | - | chr1.3:43995813-43995832 | MS.gene81715:intron | 40.0% | |
| CAAACTTACACTCCGGAAAA+AGG | + | chr1.3:43996689-43996708 | None:intergenic | 40.0% | |
| CAGACTTTGGTTATTGCAAC+GGG | - | chr1.3:43997321-43997340 | MS.gene81715:intron | 40.0% | |
| CCAGAATGGTACAATGAGAA+AGG | - | chr1.3:43997034-43997053 | MS.gene81715:intron | 40.0% | |
| CCAGACTTTGGTTATTGCAA+CGG | - | chr1.3:43997320-43997339 | MS.gene81715:intron | 40.0% | |
| CCTTTCTCATTGTACCATTC+TGG | + | chr1.3:43997037-43997056 | None:intergenic | 40.0% | |
| GAAATAGCTGCGTTCTATGA+GGG | - | chr1.3:43997785-43997804 | MS.gene81715:intron | 40.0% | |
| GAAGCAGATATCGTTGTTGT+TGG | - | chr1.3:43998010-43998029 | MS.gene81715:intron | 40.0% | |
| GAATGGGGGAAAATTAAAGG+AGG | + | chr1.3:43996743-43996762 | None:intergenic | 40.0% | |
| GAGAAAGATTGCTTCCAGAA+TGG | - | chr1.3:43997020-43997039 | MS.gene81715:intron | 40.0% | |
| GATATTCAGAGTGACAAGCA+AGG | + | chr1.3:43996925-43996944 | None:intergenic | 40.0% | |
| GATCTGTCTTGGCAATTCTA+CGG | - | chr1.3:43998678-43998697 | MS.gene81715:intron | 40.0% | |
| GATTGCCTCGTACAATTTGT+CGG | + | chr1.3:43997525-43997544 | None:intergenic | 40.0% | |
| GGATGTGAATCAACTTGCAA+AGG | - | chr1.3:43998875-43998894 | MS.gene81715:intron | 40.0% | |
| GGCAATCATATCCAAAGAAG+CGG | - | chr1.3:43995870-43995889 | MS.gene81715:intron | 40.0% | |
| GGGGAAAATTAAAGGAGGAA+AGG | + | chr1.3:43996738-43996757 | None:intergenic | 40.0% | |
| GTCCCATCACTAAATTTCTC+GGG | + | chr1.3:43996421-43996440 | None:intergenic | 40.0% | |
| GTCCCGAGAAATTTAGTGAT+GGG | - | chr1.3:43996416-43996435 | MS.gene81715:CDS | 40.0% | |
| GTGAATCAACTTGCAAAGGA+AGG | - | chr1.3:43998879-43998898 | MS.gene81715:CDS | 40.0% | |
| GTTAGTGATACCATATCCAG+AGG | - | chr1.3:43998100-43998119 | MS.gene81715:intron | 40.0% | |
| TACCACAAAATGAACAGCAC+TGG | + | chr1.3:43998560-43998579 | None:intergenic | 40.0% | |
| TATGCACAAATTCGCATGAG+TGG | + | chr1.3:43997706-43997725 | None:intergenic | 40.0% | |
| TGAAATAGCTGCGTTCTATG+AGG | - | chr1.3:43997784-43997803 | MS.gene81715:intron | 40.0% | |
| TGATTTCAAAACTGGGTGTC+GGG | + | chr1.3:43998441-43998460 | None:intergenic | 40.0% | |
| TGCATGTTCTGCTATGTAGA+AGG | + | chr1.3:43998483-43998502 | None:intergenic | 40.0% | |
| TGTTCTGCTATGTAGAAGGT+TGG | + | chr1.3:43998479-43998498 | None:intergenic | 40.0% | |
| TTCAACCTGCCCTTTGAATA+GGG | + | chr1.3:43998059-43998078 | None:intergenic | 40.0% | |
| TTCAAGTACATCATCGTTGG+TGG | - | chr1.3:43995313-43995332 | MS.gene81715:CDS | 40.0% | |
| ! | AAGCAAGGCTTACCTTTTTC+CGG | - | chr1.3:43996674-43996693 | MS.gene81715:CDS | 40.0% |
| ! | GACTTCTTTTACCTGACAGA+TGG | + | chr1.3:43997966-43997985 | None:intergenic | 40.0% |
| ! | GATATCGTTGTTGTTGGTGT+TGG | - | chr1.3:43998016-43998035 | MS.gene81715:intron | 40.0% |
| ! | TAGTCAGAGATTTTGCAGCA+AGG | + | chr1.3:43997275-43997294 | None:intergenic | 40.0% |
| !! | AGTTATTGGTGCCTTTTTGG+AGG | - | chr1.3:43998791-43998810 | MS.gene81715:intron | 40.0% |
| !! | GCAATAGCTTTGTTCTCATC+AGG | + | chr1.3:43998825-43998844 | None:intergenic | 40.0% |
| !! | GTTATTGGTGCCTTTTTGGA+GGG | - | chr1.3:43998792-43998811 | MS.gene81715:intron | 40.0% |
| !! | TTCTTTTCTGGTCCTCCATA+TGG | - | chr1.3:43998508-43998527 | MS.gene81715:intron | 40.0% |
| AACTGTACCCCTGCAATCAT+TGG | + | chr1.3:43997222-43997241 | None:intergenic | 45.0% | |
| AATGGGAAAGCTGTGGTTGT+TGG | - | chr1.3:43997557-43997576 | MS.gene81715:CDS | 45.0% | |
| AATGTCCACTTACTGCACCA+AGG | + | chr1.3:43997659-43997678 | None:intergenic | 45.0% | |
| ACTTACTGCACCAAGGTTCT+GGG | + | chr1.3:43997652-43997671 | None:intergenic | 45.0% | |
| AGCAAGGGAGTTTGTGAAAC+AGG | - | chr1.3:43995828-43995847 | MS.gene81715:intron | 45.0% | |
| AGCTCCTTCTACACCGAAAT+CGG | + | chr1.3:43997462-43997481 | None:intergenic | 45.0% | |
| AGGCTCAGCCAATAAATACG+TGG | + | chr1.3:43996573-43996592 | None:intergenic | 45.0% | |
| ATGGGAAAGCTGTGGTTGTT+GGG | - | chr1.3:43997558-43997577 | MS.gene81715:intron | 45.0% | |
| CACAAGGGAGTGATAGGTAA+GGG | + | chr1.3:43996484-43996503 | None:intergenic | 45.0% | |
| CAGTATTCCGAGATCACATG+CGG | + | chr1.3:43997893-43997912 | None:intergenic | 45.0% | |
| CCAAGACAGATCAAATGAGC+GGG | + | chr1.3:43998670-43998689 | None:intergenic | 45.0% | |
| CCGTTGCAATAACCAAAGTC+TGG | + | chr1.3:43997323-43997342 | None:intergenic | 45.0% | |
| CGTCCCGAGAAATTTAGTGA+TGG | - | chr1.3:43996415-43996434 | MS.gene81715:CDS | 45.0% | |
| CTAATTCCGATGGAGAGGTA+TGG | - | chr1.3:43997867-43997886 | MS.gene81715:intron | 45.0% | |
| CTCGGAATACTGTCATGTGA+TGG | - | chr1.3:43997901-43997920 | MS.gene81715:intron | 45.0% | |
| CTTAGAGCAGGACGTTCATA+AGG | + | chr1.3:43996657-43996676 | None:intergenic | 45.0% | |
| CTTCAACCTGCCCTTTGAAT+AGG | + | chr1.3:43998060-43998079 | None:intergenic | 45.0% | |
| GCAAGGGAGTTTGTGAAACA+GGG | - | chr1.3:43995829-43995848 | MS.gene81715:intron | 45.0% | |
| GCCAAGACAGATCAAATGAG+CGG | + | chr1.3:43998671-43998690 | None:intergenic | 45.0% | |
| GGATTCACCTCTAATTCCGA+TGG | - | chr1.3:43997857-43997876 | MS.gene81715:intron | 45.0% | |
| TAAAGCTTGACACAAGCCTC+TGG | + | chr1.3:43998119-43998138 | None:intergenic | 45.0% | |
| TACCTATCACTCCCTTGTGA+TGG | - | chr1.3:43996485-43996504 | MS.gene81715:intron | 45.0% | |
| TACCTCTCCATCGGAATTAG+AGG | + | chr1.3:43997867-43997886 | None:intergenic | 45.0% | |
| TCACAAGGGAGTGATAGGTA+AGG | + | chr1.3:43996485-43996504 | None:intergenic | 45.0% | |
| TCCATACCTGTGTTGGAAGT+GGG | - | chr1.3:43996996-43997015 | MS.gene81715:intron | 45.0% | |
| TGAAACAGGGAGTTAAGCCT+GGG | - | chr1.3:43995842-43995861 | MS.gene81715:intron | 45.0% | |
| TGATGCCGACAAATTGTACG+AGG | - | chr1.3:43997517-43997536 | MS.gene81715:intron | 45.0% | |
| TGATTCACATCCTTCACTGC+AGG | + | chr1.3:43998867-43998886 | None:intergenic | 45.0% | |
| TGTCGGGATATAGGGATCAT+GGG | + | chr1.3:43998425-43998444 | None:intergenic | 45.0% | |
| TTCCATACCTGTGTTGGAAG+TGG | - | chr1.3:43996995-43997014 | MS.gene81715:intron | 45.0% | |
| TTGACACAAGCCTCTGGATA+TGG | + | chr1.3:43998113-43998132 | None:intergenic | 45.0% | |
| ! | AAGTACATCATCGTTGGTGG+TGG | - | chr1.3:43995316-43995335 | MS.gene81715:CDS | 45.0% |
| ! | ATAAGGTGCTACCTGCACAA+AGG | + | chr1.3:43996640-43996659 | None:intergenic | 45.0% |
| ! | ATTCAAAGGGCAGGTTGAAG+AGG | - | chr1.3:43998060-43998079 | MS.gene81715:intron | 45.0% |
| ! | TTGACCGATTTCGGTGTAGA+AGG | - | chr1.3:43997455-43997474 | MS.gene81715:intron | 45.0% |
| !! | AAAACTGGGTGTCGGGATAT+AGG | + | chr1.3:43998434-43998453 | None:intergenic | 45.0% |
| !! | AAACTGGGTGTCGGGATATA+GGG | + | chr1.3:43998433-43998452 | None:intergenic | 45.0% |
| !! | ATCGTTGTTGTTGGTGTTGG+AGG | - | chr1.3:43998019-43998038 | MS.gene81715:intron | 45.0% |
| !! | CTATGTAGAAGGTTGGCCTA+AGG | + | chr1.3:43998472-43998491 | None:intergenic | 45.0% |
| !! | GTTGGTGACACAGTGCTATT+TGG | - | chr1.3:43998708-43998727 | MS.gene81715:intron | 45.0% |
| !! | TGCCAGTGCTGTTCATTTTG+TGG | - | chr1.3:43998555-43998574 | MS.gene81715:intron | 45.0% |
| AGAGGAGAAGGGTGGAATCA+AGG | - | chr1.3:43998078-43998097 | MS.gene81715:intron | 50.0% | |
| AGGTAAGCCTTGCTTAGAGC+AGG | + | chr1.3:43996669-43996688 | None:intergenic | 50.0% | |
| CAATTCTACGGCGACAACGT+TGG | - | chr1.3:43998690-43998709 | MS.gene81715:intron | 50.0% | |
| CACAAATTCGCATGAGTGGG+AGG | + | chr1.3:43997702-43997721 | None:intergenic | 50.0% | |
| CACCTCTAATTCCGATGGAG+AGG | - | chr1.3:43997862-43997881 | MS.gene81715:intron | 50.0% | |
| CACTTACTGCACCAAGGTTC+TGG | + | chr1.3:43997653-43997672 | None:intergenic | 50.0% | |
| CATACCTGTGTTGGAAGTGG+GGG | - | chr1.3:43996998-43997017 | MS.gene81715:intron | 50.0% | |
| CATGGGATCATGCCGGAAAA+AGG | + | chr1.3:43998408-43998427 | None:intergenic | 50.0% | |
| CCATACCTGTGTTGGAAGTG+GGG | - | chr1.3:43996997-43997016 | MS.gene81715:intron | 50.0% | |
| CCCGCTCATTTGATCTGTCT+TGG | - | chr1.3:43998667-43998686 | MS.gene81715:intron | 50.0% | |
| GAAACAGGGAGTTAAGCCTG+GGG | - | chr1.3:43995843-43995862 | MS.gene81715:intron | 50.0% | |
| GTCCATCACAAGGGAGTGAT+AGG | + | chr1.3:43996490-43996509 | None:intergenic | 50.0% | |
| GTGAAACAGGGAGTTAAGCC+TGG | - | chr1.3:43995841-43995860 | MS.gene81715:intron | 50.0% | |
| GTGTCGGGATATAGGGATCA+TGG | + | chr1.3:43998426-43998445 | None:intergenic | 50.0% | |
| GTTGTTGGGGGAGGATACAT+TGG | - | chr1.3:43997572-43997591 | MS.gene81715:intron | 50.0% | |
| TAGGGATCATGGGATCATGC+CGG | + | chr1.3:43998415-43998434 | None:intergenic | 50.0% | |
| TGGGAAAGCTGTGGTTGTTG+GGG | - | chr1.3:43997559-43997578 | MS.gene81715:intron | 50.0% | |
| ! | ACTAAAGGACGGAAGGGTAC+TGG | - | chr1.3:43997988-43998007 | MS.gene81715:intron | 50.0% |
| ! | CAGAACCTTGGTGCAGTAAG+TGG | - | chr1.3:43997651-43997670 | MS.gene81715:intron | 50.0% |
| ! | TGAACGTCCTGCTCTAAGCA+AGG | - | chr1.3:43996659-43996678 | MS.gene81715:CDS | 50.0% |
| ! | TTGCAACGGGCTCAACTGTA+AGG | - | chr1.3:43997334-43997353 | MS.gene81715:intron | 50.0% |
| !! | AAGAGCATTGCCTGCAGTGA+AGG | - | chr1.3:43998854-43998873 | MS.gene81715:intron | 50.0% |
| !! | ATTGGTGCCTTTTTGGAGGG+CGG | - | chr1.3:43998795-43998814 | MS.gene81715:intron | 50.0% |
| AAAGCTGTGGTTGTTGGGGG+AGG | - | chr1.3:43997563-43997582 | MS.gene81715:intron | 55.0% | |
| AGGAGTTCCGCCCTCCAAAA+AGG | + | chr1.3:43998805-43998824 | None:intergenic | 55.0% | |
| ATGCGGCCATACCTCTCCAT+CGG | + | chr1.3:43997876-43997895 | None:intergenic | 55.0% | |
| CAGCTCCTGCTAGACTTCCT+GGG | - | chr1.3:43996972-43996991 | MS.gene81715:CDS | 55.0% | |
| CCAACACAGGTATGGAACCC+AGG | + | chr1.3:43996992-43997011 | None:intergenic | 55.0% | |
| CCATGGTCTACCCAGAACCT+TGG | - | chr1.3:43997639-43997658 | MS.gene81715:intron | 55.0% | |
| CCCCACTTCCAACACAGGTA+TGG | + | chr1.3:43997000-43997019 | None:intergenic | 55.0% | |
| CCTGGGTTCCATACCTGTGT+TGG | - | chr1.3:43996989-43997008 | MS.gene81715:intron | 55.0% | |
| GATATGATTGCCAGCTCCCC+AGG | + | chr1.3:43995862-43995881 | None:intergenic | 55.0% | |
| GGGAAAGCTGTGGTTGTTGG+GGG | - | chr1.3:43997560-43997579 | MS.gene81715:intron | 55.0% | |
| GGTATGGCCGCATGTGATCT+CGG | - | chr1.3:43997883-43997902 | MS.gene81715:intron | 55.0% | |
| TCCTGCCTCTGCTGCAATGA+TGG | + | chr1.3:43998607-43998626 | None:intergenic | 55.0% | |
| TGCTCGCAAATCAGCTGAGC+AGG | - | chr1.3:43998318-43998337 | MS.gene81715:intron | 55.0% | |
| TGGAACCCAGGAAGTCTAGC+AGG | + | chr1.3:43996980-43996999 | None:intergenic | 55.0% | |
| TGGGGGAGGATACATTGGTC+TGG | - | chr1.3:43997577-43997596 | MS.gene81715:intron | 55.0% | |
| TTCTCCCCCACTTCCAACAC+AGG | + | chr1.3:43997005-43997024 | None:intergenic | 55.0% | |
| ! | AGGGCAGGTTGAAGAGGAGA+AGG | - | chr1.3:43998066-43998085 | MS.gene81715:intron | 55.0% |
| ! | CAGGTTGAAGAGGAGAAGGG+TGG | - | chr1.3:43998070-43998089 | MS.gene81715:intron | 55.0% |
| ! | GGCTGAGCCTTGTGCAGTTA+TGG | - | chr1.3:43996583-43996602 | MS.gene81715:CDS | 55.0% |
| ! | GGGCAGGTTGAAGAGGAGAA+GGG | - | chr1.3:43998067-43998086 | MS.gene81715:intron | 55.0% |
| !! | CCAAGGTTCTGGGTAGACCA+TGG | + | chr1.3:43997642-43997661 | None:intergenic | 55.0% |
| ATCAGCTGAGCAGGCTGCGA+AGG | - | chr1.3:43998327-43998346 | MS.gene81715:intron | 60.0% | |
| GCAGCTCCTGCTAGACTTCC+TGG | - | chr1.3:43996971-43996990 | MS.gene81715:CDS | 60.0% | |
| GCAGGCCATCATTGCAGCAG+AGG | - | chr1.3:43998599-43998618 | MS.gene81715:intron | 60.0% | |
| GCCATCATTGCAGCAGAGGC+AGG | - | chr1.3:43998603-43998622 | MS.gene81715:intron | 60.0% | |
| GGGAGTTAAGCCTGGGGAGC+TGG | - | chr1.3:43995849-43995868 | MS.gene81715:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 43995298 | 43998926 | 43995298 | ID=MS.gene81715 |
| chr1.3 | mRNA | 43995298 | 43998926 | 43995298 | ID=MS.gene81715.t1;Parent=MS.gene81715 |
| chr1.3 | exon | 43998876 | 43998926 | 43998876 | ID=MS.gene81715.t1.exon1;Parent=MS.gene81715.t1 |
| chr1.3 | CDS | 43998876 | 43998926 | 43998876 | ID=cds.MS.gene81715.t1;Parent=MS.gene81715.t1 |
| chr1.3 | exon | 43998333 | 43998404 | 43998333 | ID=MS.gene81715.t1.exon2;Parent=MS.gene81715.t1 |
| chr1.3 | CDS | 43998333 | 43998404 | 43998333 | ID=cds.MS.gene81715.t1;Parent=MS.gene81715.t1 |
| chr1.3 | exon | 43997525 | 43997576 | 43997525 | ID=MS.gene81715.t1.exon3;Parent=MS.gene81715.t1 |
| chr1.3 | CDS | 43997525 | 43997576 | 43997525 | ID=cds.MS.gene81715.t1;Parent=MS.gene81715.t1 |
| chr1.3 | exon | 43997169 | 43997249 | 43997169 | ID=MS.gene81715.t1.exon4;Parent=MS.gene81715.t1 |
| chr1.3 | CDS | 43997169 | 43997249 | 43997169 | ID=cds.MS.gene81715.t1;Parent=MS.gene81715.t1 |
| chr1.3 | exon | 43996874 | 43996992 | 43996874 | ID=MS.gene81715.t1.exon5;Parent=MS.gene81715.t1 |
| chr1.3 | CDS | 43996874 | 43996992 | 43996874 | ID=cds.MS.gene81715.t1;Parent=MS.gene81715.t1 |
| chr1.3 | exon | 43996559 | 43996778 | 43996559 | ID=MS.gene81715.t1.exon6;Parent=MS.gene81715.t1 |
| chr1.3 | CDS | 43996559 | 43996778 | 43996559 | ID=cds.MS.gene81715.t1;Parent=MS.gene81715.t1 |
| chr1.3 | exon | 43996341 | 43996459 | 43996341 | ID=MS.gene81715.t1.exon7;Parent=MS.gene81715.t1 |
| chr1.3 | CDS | 43996341 | 43996459 | 43996341 | ID=cds.MS.gene81715.t1;Parent=MS.gene81715.t1 |
| chr1.3 | exon | 43996125 | 43996250 | 43996125 | ID=MS.gene81715.t1.exon8;Parent=MS.gene81715.t1 |
| chr1.3 | CDS | 43996125 | 43996250 | 43996125 | ID=cds.MS.gene81715.t1;Parent=MS.gene81715.t1 |
| chr1.3 | exon | 43995876 | 43996016 | 43995876 | ID=MS.gene81715.t1.exon9;Parent=MS.gene81715.t1 |
| chr1.3 | CDS | 43995876 | 43996016 | 43995876 | ID=cds.MS.gene81715.t1;Parent=MS.gene81715.t1 |
| chr1.3 | exon | 43995298 | 43995621 | 43995298 | ID=MS.gene81715.t1.exon10;Parent=MS.gene81715.t1 |
| chr1.3 | CDS | 43995298 | 43995621 | 43995298 | ID=cds.MS.gene81715.t1;Parent=MS.gene81715.t1 |
| Gene Sequence |
| Protein sequence |
