Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43369.t1 | XP_013467242.1 | 95.7 | 866 | 36 | 1 | 102 | 967 | 104 | 968 | 0.00E+00 | 1510.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43369.t1 | Q6NU40 | 28.1 | 901 | 494 | 20 | 125 | 967 | 180 | 984 | 5.6e-77 | 290.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43369.t1 | A0A072VI46 | 95.7 | 866 | 36 | 1 | 102 | 967 | 104 | 968 | 0.0e+00 | 1510.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43369.t1 | MTR_1g047790 | 95.745 | 940 | 39 | 1 | 28 | 967 | 30 | 968 | 0.0 | 1792 |
| MS.gene43369.t1 | MTR_4g050180 | 23.503 | 451 | 268 | 11 | 351 | 772 | 455 | 857 | 2.06e-14 | 78.6 |
| MS.gene43369.t1 | MTR_4g050180 | 23.503 | 451 | 268 | 11 | 351 | 772 | 426 | 828 | 2.56e-14 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43369.t1 | AT1G04730 | 55.275 | 910 | 343 | 15 | 70 | 967 | 69 | 926 | 0.0 | 925 |
| MS.gene43369.t1 | AT1G04730 | 58.124 | 757 | 261 | 11 | 216 | 967 | 1 | 706 | 0.0 | 842 |
| MS.gene43369.t1 | AT1G04730 | 58.124 | 757 | 261 | 11 | 216 | 967 | 1 | 706 | 0.0 | 842 |
| MS.gene43369.t1 | AT1G04730 | 58.124 | 757 | 261 | 11 | 216 | 967 | 1 | 706 | 0.0 | 842 |
| MS.gene43369.t1 | AT5G22010 | 31.944 | 216 | 103 | 5 | 348 | 548 | 390 | 576 | 3.38e-14 | 77.8 |
| MS.gene43369.t1 | AT5G22010 | 31.944 | 216 | 103 | 5 | 348 | 548 | 390 | 576 | 5.51e-14 | 77.0 |
Find 206 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGGCAGCTTTATAAACTTTA+AGG | 0.086280 | 1.4:+32917270 | MS.gene43369:CDS |
| AAGCTAGAGGTTTCGGTTTA+TGG | 0.116815 | 1.4:-32904133 | None:intergenic |
| TCATGGATCGTTAGTGTTTC+AGG | 0.156403 | 1.4:-32903797 | None:intergenic |
| GTAGAGATCTGTCATCATTT+TGG | 0.220632 | 1.4:-32919032 | None:intergenic |
| CTTTCTAACAAAACACTAAT+AGG | 0.222514 | 1.4:-32903536 | None:intergenic |
| ACTTCATACTTCAGGGTATT+AGG | 0.243838 | 1.4:-32917211 | None:intergenic |
| TTGAAAAGAGAGAGAAAGTT+AGG | 0.252411 | 1.4:+32902630 | MS.gene43369:CDS |
| CTTTCTTCTTAGAGAGAAAT+TGG | 0.253179 | 1.4:-32913143 | None:intergenic |
| TTTACCTATGAAGCAGGTTT+TGG | 0.269384 | 1.4:+32917407 | MS.gene43369:CDS |
| TCACCTGTCGAAGAAATTTA+AGG | 0.271243 | 1.4:-32918203 | None:intergenic |
| ACTGGTGCTCAGTTTGATAT+TGG | 0.281263 | 1.4:+32914892 | MS.gene43369:intron |
| GATTTCCTTGCTAAAACATT+AGG | 0.287862 | 1.4:-32918067 | None:intergenic |
| CGGTGGTGGTTGTTCTGGTT+CGG | 0.289350 | 1.4:-32902531 | None:intergenic |
| ATCGGAATCTGAATTCAAAT+TGG | 0.302705 | 1.4:-32902591 | None:intergenic |
| CATGAATTCCATCCAGAATC+AGG | 0.306086 | 1.4:-32915265 | None:intergenic |
| CATCTGCTACTTCATACTTC+AGG | 0.308025 | 1.4:-32917219 | None:intergenic |
| TGGTTTACCGGTATGATATA+AGG | 0.308456 | 1.4:-32915153 | None:intergenic |
| TCGAGTAATTCGAGTTCTTC+GGG | 0.309357 | 1.4:-32902428 | None:intergenic |
| CAATGGGATTCTACTGTGTT+TGG | 0.310955 | 1.4:+32904047 | MS.gene43369:CDS |
| TAAGTATATTACCGGTCTTA+TGG | 0.317117 | 1.4:-32915927 | None:intergenic |
| AGAGAGAGAAAGTTAGGGTT+AGG | 0.325005 | 1.4:+32902636 | MS.gene43369:CDS |
| TGGTGATAGTGACCTGATTC+TGG | 0.331266 | 1.4:+32915253 | MS.gene43369:CDS |
| GACTTTGGCCACTCAATGTT+TGG | 0.335215 | 1.4:-32915653 | None:intergenic |
| AGCTAGAGGTTTCGGTTTAT+GGG | 0.335276 | 1.4:-32904132 | None:intergenic |
| GAAAGTTAGGGTTAGGGTTG+CGG | 0.343559 | 1.4:+32902643 | MS.gene43369:CDS |
| CGATGTCATGGATATGGATA+TGG | 0.345675 | 1.4:+32902382 | MS.gene43369:CDS |
| GGTGGTGGTTGTTCTGGTTC+GGG | 0.346780 | 1.4:-32902530 | None:intergenic |
| GCTTCGGCCACCTCCGACTT+CGG | 0.349858 | 1.4:+32902694 | MS.gene43369:CDS |
| GTTGGCGGTGGTGGTTGTTC+TGG | 0.349989 | 1.4:-32902536 | None:intergenic |
| AACATTAGGTTGACTTTCAA+TGG | 0.351503 | 1.4:-32918053 | None:intergenic |
| AGACTTAATTTCTCCATTGT+TGG | 0.358311 | 1.4:+32915886 | MS.gene43369:CDS |
| TTTGAATTCAGATTCCGATT+TGG | 0.363594 | 1.4:+32902595 | MS.gene43369:CDS |
| AAACTTTGCTTCCCTGCATC+AGG | 0.364573 | 1.4:-32908074 | None:intergenic |
| AAATTTGAAGCTAGAGGTTT+CGG | 0.367950 | 1.4:-32904140 | None:intergenic |
| TTCGGGTTCGAGTTCGTCTT+CGG | 0.369479 | 1.4:-32902513 | None:intergenic |
| TGATTTCGATGTCATGGATA+TGG | 0.372752 | 1.4:+32902376 | MS.gene43369:CDS |
| AATTGTAGAGGAGATTCTTC+TGG | 0.374605 | 1.4:+32902875 | MS.gene43369:CDS |
| GTTTAAGAAGTCAAGTGTTA+AGG | 0.375440 | 1.4:+32919005 | MS.gene43369:CDS |
| AAGTGCAGCTGCATGATTCT+TGG | 0.379554 | 1.4:-32918020 | None:intergenic |
| GCTATGTGGACCACCAGGTC+TGG | 0.382139 | 1.4:+32905368 | MS.gene43369:CDS |
| GAACAAAAGGAGGGCACACC+TGG | 0.382644 | 1.4:+32904219 | MS.gene43369:CDS |
| TTTATAAAGCTGCCGATAGA+AGG | 0.384388 | 1.4:-32917262 | None:intergenic |
| TGATGCAGGGAAGCAAAGTT+TGG | 0.385461 | 1.4:+32908076 | MS.gene43369:CDS |
| TTCGAGTAATTCGAGTTCTT+CGG | 0.396296 | 1.4:-32902429 | None:intergenic |
| TGATTCTTGGTATTCGCAAA+TGG | 0.399723 | 1.4:-32918007 | None:intergenic |
| CAAGTTTGGTGAAATTGTCT+TGG | 0.403380 | 1.4:-32918101 | None:intergenic |
| TCGGGTTCGAGTTCGTCTTC+GGG | 0.406020 | 1.4:-32902512 | None:intergenic |
| TGCACCAAAACCTGCTTCAT+AGG | 0.417809 | 1.4:-32917411 | None:intergenic |
| TCACCATTCGGCGCAGTAAC+CGG | 0.423448 | 1.4:-32902797 | None:intergenic |
| GTTCCTTAAATTTCTTCGAC+AGG | 0.426510 | 1.4:+32918200 | MS.gene43369:CDS |
| GGGAAGCAAAGTTTGGATAA+AGG | 0.427568 | 1.4:+32908083 | MS.gene43369:CDS |
| CCTGGAGTAGTAATAGTAAC+AGG | 0.427634 | 1.4:+32904237 | MS.gene43369:CDS |
| CGATTTGCGTCGGAGATTGA+TGG | 0.427799 | 1.4:+32902764 | MS.gene43369:CDS |
| AAATTTAAGGAACTCCTAGA+TGG | 0.428279 | 1.4:-32918190 | None:intergenic |
| TTTAAGAAGTCAAGTGTTAA+GGG | 0.430291 | 1.4:+32919006 | MS.gene43369:CDS |
| TTACTGCGCCGAATGGTGAT+AGG | 0.430846 | 1.4:+32902801 | MS.gene43369:CDS |
| TTGTCTCTTGTTCCTTCTAT+CGG | 0.433258 | 1.4:+32917250 | MS.gene43369:CDS |
| CATTGCACTCAGTGCTTTAG+CGG | 0.442706 | 1.4:+32912778 | MS.gene43369:CDS |
| ACTCTTGTGGTTAAAACAAT+GGG | 0.444335 | 1.4:+32904031 | MS.gene43369:CDS |
| ATCTGCTACTTCATACTTCA+GGG | 0.444478 | 1.4:-32917218 | None:intergenic |
| CACTTGGCGTAATGATCTTA+AGG | 0.447217 | 1.4:-32908304 | None:intergenic |
| GATGAGACTGGTAGTTCAAA+TGG | 0.448581 | 1.4:+32904281 | MS.gene43369:CDS |
| ATCTGAATTCAAATTGGAAC+GGG | 0.449378 | 1.4:-32902585 | None:intergenic |
| GCGAAATCTGTTGGCGGTGG+TGG | 0.449678 | 1.4:-32902545 | None:intergenic |
| AGTGCTTTAGCGGATTATAC+AGG | 0.455389 | 1.4:+32912788 | MS.gene43369:CDS |
| TATGGATATGGACATGGAAA+TGG | 0.455506 | 1.4:+32902394 | MS.gene43369:CDS |
| GCTGAAAAGAAGCCTGATGC+AGG | 0.458981 | 1.4:+32908062 | MS.gene43369:CDS |
| GAGAGAGAAAGTTAGGGTTA+GGG | 0.460468 | 1.4:+32902637 | MS.gene43369:CDS |
| TAAAACTCACAGGTCTTGAC+AGG | 0.461992 | 1.4:-32908151 | None:intergenic |
| GATTCTTGGTATTCGCAAAT+GGG | 0.462184 | 1.4:-32918006 | None:intergenic |
| CAATTATCATGATCCAGTTA+TGG | 0.463721 | 1.4:+32915304 | MS.gene43369:CDS |
| CAGTTAGTCGGGTGGTAAGC+AGG | 0.464227 | 1.4:+32911037 | MS.gene43369:CDS |
| GGTTTACCGGTATGATATAA+GGG | 0.466141 | 1.4:-32915152 | None:intergenic |
| TGATTCAAAGCCAAAGTGTC+TGG | 0.469721 | 1.4:+32907203 | MS.gene43369:CDS |
| AGCCAATCCTCTTCTTCTGC+AGG | 0.471765 | 1.4:-32902674 | None:intergenic |
| TCGCGATAACCTCTTATCCT+TGG | 0.472647 | 1.4:-32902744 | None:intergenic |
| ACGAAGCTGGATAGGTATTA+CGG | 0.473484 | 1.4:+32902830 | MS.gene43369:CDS |
| GGAAAGGAAATCATCAAAGA+AGG | 0.474855 | 1.4:+32908112 | MS.gene43369:CDS |
| TACCTTCTGTTCTGGTGCAC+CGG | 0.476036 | 1.4:-32904339 | None:intergenic |
| AAGTTTGGATAAAGGACAAA+TGG | 0.476134 | 1.4:+32908091 | MS.gene43369:CDS |
| CAGTCTTGAAGTTTATGATC+TGG | 0.476462 | 1.4:+32915439 | MS.gene43369:CDS |
| TGTTCAACCAACAGTTAGTC+GGG | 0.477153 | 1.4:+32911026 | MS.gene43369:CDS |
| AACATCAGAACAATCCAAAT+CGG | 0.477494 | 1.4:-32902609 | None:intergenic |
| TACTGCGCCGAATGGTGATA+GGG | 0.481091 | 1.4:+32902802 | MS.gene43369:CDS |
| CTATGTGGACCACCAGGTCT+GGG | 0.481166 | 1.4:+32905369 | MS.gene43369:CDS |
| AAGTTTGGTGAAATTGTCTT+GGG | 0.486340 | 1.4:-32918100 | None:intergenic |
| TTGAAATCTTACCGCATTGA+GGG | 0.487130 | 1.4:-32913169 | None:intergenic |
| GATATTGGTTCGCAAGTTGT+TGG | 0.489356 | 1.4:+32914907 | MS.gene43369:CDS |
| CAGGAACATCTACAACACTT+TGG | 0.491795 | 1.4:-32903778 | None:intergenic |
| ATTACAACTACTGTCGGATA+AGG | 0.495520 | 1.4:+32917108 | MS.gene43369:CDS |
| GGGCATGACGTTATTGAGGC+TGG | 0.495747 | 1.4:+32917968 | MS.gene43369:CDS |
| TACTCTTGTGGTTAAAACAA+TGG | 0.496335 | 1.4:+32904030 | MS.gene43369:CDS |
| TGAGATTCTCCAAGGATAAG+AGG | 0.498717 | 1.4:+32902735 | MS.gene43369:CDS |
| GCTTTCAGAACTAGCTTCCA+AGG | 0.500607 | 1.4:-32903756 | None:intergenic |
| AATTCGAGTTCTTCGGGGAG+AGG | 0.501144 | 1.4:-32902422 | None:intergenic |
| ATAGAAAATACCAGACACTT+TGG | 0.502044 | 1.4:-32907213 | None:intergenic |
| GAACAAAAGGAGGGCACAGT+TGG | 0.504795 | 1.4:+32904168 | MS.gene43369:CDS |
| GTATACCTGTGATATGACTT+TGG | 0.506724 | 1.4:-32915668 | None:intergenic |
| AAAGTAGTGGTCATCATCAT+CGG | 0.508984 | 1.4:-32902480 | None:intergenic |
| TGAAAAGAGAGAGAAAGTTA+GGG | 0.509596 | 1.4:+32902631 | MS.gene43369:CDS |
| CTAGGAAAATTTGAAGCTAG+AGG | 0.512122 | 1.4:-32904146 | None:intergenic |
| AGCACTGAGTGCAATGGCAT+TGG | 0.515089 | 1.4:-32912771 | None:intergenic |
| TTCGCAAGTTGTTGGTCAGA+AGG | 0.515705 | 1.4:+32914915 | MS.gene43369:CDS |
| CTCCTGCAGAAGAAGAGGAT+TGG | 0.516624 | 1.4:+32902672 | MS.gene43369:CDS |
| AATGGATGATTTCGATGTCA+TGG | 0.519594 | 1.4:+32902370 | None:intergenic |
| AACAACGATGATGGAAAAGA+TGG | 0.521725 | 1.4:+32915790 | MS.gene43369:CDS |
| GCTTTCTTTACCTATGAAGC+AGG | 0.522251 | 1.4:+32917401 | MS.gene43369:CDS |
| AAAACTGCGACTTTAACAAA+AGG | 0.522898 | 1.4:+32917944 | MS.gene43369:CDS |
| CTTCTGCTATGTGGACCACC+AGG | 0.524036 | 1.4:+32905363 | MS.gene43369:CDS |
| CAGAAGAAGAGGATTGGCTT+CGG | 0.525407 | 1.4:+32902678 | MS.gene43369:CDS |
| TAGGTATCGAACAACGATGA+TGG | 0.526100 | 1.4:+32915781 | MS.gene43369:intron |
| AAGTAGTGGTCATCATCATC+GGG | 0.530659 | 1.4:-32902479 | None:intergenic |
| ACACAACAAATGCCTCTCCT+TGG | 0.533973 | 1.4:+32915482 | MS.gene43369:CDS |
| GAAAGGAAATCATCAAAGAA+GGG | 0.537066 | 1.4:+32908113 | MS.gene43369:CDS |
| TGATAGGGTTTATACGAAGC+TGG | 0.538089 | 1.4:+32902817 | MS.gene43369:CDS |
| TGGTAACTTACTTGGCCACT+TGG | 0.539907 | 1.4:-32908320 | None:intergenic |
| CCTGTTACTATTACTACTCC+AGG | 0.540186 | 1.4:-32904237 | None:intergenic |
| AAGTCTTCAACAAAGGAAGT+AGG | 0.542169 | 1.4:-32915869 | None:intergenic |
| AATATATATGTAACAAGGAG+GGG | 0.542801 | 1.4:+32912741 | MS.gene43369:CDS |
| TGATGGAAAGGGTGCTGTGG+AGG | 0.543413 | 1.4:+32907340 | MS.gene43369:CDS |
| TAGGTAAAGAAAGCGCGTAA+TGG | 0.543937 | 1.4:-32917392 | None:intergenic |
| TGTTCTCGACATCTGGAAAG+AGG | 0.544296 | 1.4:+32914951 | MS.gene43369:CDS |
| TAGGTGGTGGATGAAATTGA+TGG | 0.544828 | 1.4:+32907308 | MS.gene43369:intron |
| ATCCCCACCATCCATAAGAC+CGG | 0.546602 | 1.4:+32915916 | MS.gene43369:CDS |
| GAGGTTATCGCGATTTGCGT+CGG | 0.547066 | 1.4:+32902754 | MS.gene43369:CDS |
| GGGTTTATACGAAGCTGGAT+AGG | 0.547407 | 1.4:+32902822 | MS.gene43369:CDS |
| ATTGAAATCTTACCGCATTG+AGG | 0.554309 | 1.4:-32913170 | None:intergenic |
| TTGTTCAACCAACAGTTAGT+CGG | 0.555383 | 1.4:+32911025 | MS.gene43369:CDS |
| GTCTATGACAGGTACTCTTG+TGG | 0.556382 | 1.4:+32904018 | MS.gene43369:intron |
| TACCGGTCTTATGGATGGTG+GGG | 0.557624 | 1.4:-32915918 | None:intergenic |
| ATTGATGGAGCCCTTGGTGA+TGG | 0.558634 | 1.4:+32907323 | MS.gene43369:CDS |
| AATGCGAAGTCACGGAATAC+CGG | 0.559927 | 1.4:+32904320 | MS.gene43369:CDS |
| GTATAAACCCTATCACCATT+CGG | 0.560491 | 1.4:-32902809 | None:intergenic |
| AGAAATTAAGTCTTCAACAA+AGG | 0.560850 | 1.4:-32915876 | None:intergenic |
| TTACCGGTCTTATGGATGGT+GGG | 0.560914 | 1.4:-32915919 | None:intergenic |
| AAATATATATGTAACAAGGA+GGG | 0.561991 | 1.4:+32912740 | MS.gene43369:CDS |
| GATTGATGGTGAAGTTATGC+CGG | 0.565913 | 1.4:+32902778 | MS.gene43369:CDS |
| TGGTGATGGAAAGGGTGCTG+TGG | 0.566395 | 1.4:+32907337 | MS.gene43369:CDS |
| TGTACTCCCTTATATCATAC+CGG | 0.566517 | 1.4:+32915146 | MS.gene43369:CDS |
| CGCTAAAGCACTGAGTGCAA+TGG | 0.568087 | 1.4:-32912777 | None:intergenic |
| TTGTGGATATCATGTGGTTG+AGG | 0.568428 | 1.4:+32905425 | MS.gene43369:CDS |
| TCAACTGTAACTTCCGAAGT+CGG | 0.568857 | 1.4:-32902707 | None:intergenic |
| TGGCGTAATGATCTTAAGGC+AGG | 0.570004 | 1.4:-32908300 | None:intergenic |
| TGACAGATCCTTCTGCTATG+TGG | 0.570271 | 1.4:+32905354 | MS.gene43369:intron |
| ATCTTAAGGCAGGTGCATAT+AGG | 0.572649 | 1.4:-32908290 | None:intergenic |
| TGATGTAGAACGATCATCAC+TGG | 0.573132 | 1.4:-32907130 | None:intergenic |
| TTTAAGAGTACAGATGAGAC+TGG | 0.574395 | 1.4:+32904269 | MS.gene43369:CDS |
| GATGAAATTGATGGAGCCCT+TGG | 0.575535 | 1.4:+32907317 | MS.gene43369:CDS |
| AGGAGGGCATGACGTTATTG+AGG | 0.578081 | 1.4:+32917964 | MS.gene43369:CDS |
| AGATGCTCCTGCAGAAGAAG+AGG | 0.578687 | 1.4:+32902667 | MS.gene43369:CDS |
| CTTACCACCCGACTAACTGT+TGG | 0.578892 | 1.4:-32911033 | None:intergenic |
| TACCGGTGCACCAGAACAGA+AGG | 0.583983 | 1.4:+32904337 | MS.gene43369:CDS |
| GAGAAGATCAGTAAAAGACT+TGG | 0.584087 | 1.4:-32903846 | None:intergenic |
| AGATCAAGAGAATTTCGCTA+AGG | 0.584578 | 1.4:+32903562 | MS.gene43369:CDS |
| GTAACTTCCGAAGTCGGAGG+TGG | 0.588749 | 1.4:-32902701 | None:intergenic |
| CATGGATATGGATATGGACA+TGG | 0.589625 | 1.4:+32902388 | MS.gene43369:CDS |
| ATGCCGGTTACTGCGCCGAA+TGG | 0.589653 | 1.4:+32902794 | MS.gene43369:CDS |
| TGTACAATAATTGCTATGGT+AGG | 0.589957 | 1.4:-32915605 | None:intergenic |
| AATCTGAATTCAAATTGGAA+CGG | 0.592683 | 1.4:-32902586 | None:intergenic |
| TGGATAAAGGACAAATGGAA+AGG | 0.593258 | 1.4:+32908096 | MS.gene43369:CDS |
| GGAGCCCTTGGTGATGGAAA+GGG | 0.595218 | 1.4:+32907329 | MS.gene43369:CDS |
| TGACTGTTAGCGAAATCTGT+TGG | 0.596289 | 1.4:-32902554 | None:intergenic |
| TATATTACCGGTCTTATGGA+TGG | 0.596794 | 1.4:-32915923 | None:intergenic |
| CTTAAGATCATTACGCCAAG+TGG | 0.597064 | 1.4:+32908305 | MS.gene43369:CDS |
| ATATATATGTAACAAGGAGG+GGG | 0.598305 | 1.4:+32912742 | MS.gene43369:CDS |
| ATTACCGGTCTTATGGATGG+TGG | 0.598649 | 1.4:-32915920 | None:intergenic |
| CTGTTAGCGAAATCTGTTGG+CGG | 0.598908 | 1.4:-32902551 | None:intergenic |
| AGTGGCCAAAGTCATATCAC+AGG | 0.601263 | 1.4:+32915663 | MS.gene43369:CDS |
| AGTTCATCTGAACCACATCA+AGG | 0.601964 | 1.4:-32907170 | None:intergenic |
| CTGAAAAGAAGCCTGATGCA+GGG | 0.603143 | 1.4:+32908063 | MS.gene43369:CDS |
| TGGAGCCCTTGGTGATGGAA+AGG | 0.603757 | 1.4:+32907328 | MS.gene43369:CDS |
| ACTGCGACTTTAACAAAAGG+AGG | 0.605355 | 1.4:+32917947 | MS.gene43369:CDS |
| TTCAAAAGCCAAACATTGAG+TGG | 0.605804 | 1.4:+32915645 | MS.gene43369:CDS |
| AGAAGATCAGTAAAAGACTT+GGG | 0.607880 | 1.4:-32903845 | None:intergenic |
| CAAGACAAAACTGCTAGACA+TGG | 0.608832 | 1.4:+32918153 | MS.gene43369:CDS |
| AAATATCGCCACATATTGCA+AGG | 0.608936 | 1.4:+32915837 | MS.gene43369:CDS |
| CGGGAGGATTGTAAAAGTAG+TGG | 0.611377 | 1.4:-32902493 | None:intergenic |
| CACTTGCACATGTAGCTGCT+AGG | 0.615704 | 1.4:+32905400 | MS.gene43369:CDS |
| GTATGATATAAGGGAGTACA+AGG | 0.619033 | 1.4:-32915143 | None:intergenic |
| TTAGCGAAATCTGTTGGCGG+TGG | 0.621962 | 1.4:-32902548 | None:intergenic |
| ATGATGTACAATAATTGCTA+TGG | 0.623036 | 1.4:-32915609 | None:intergenic |
| GGTGGCATTACAACTACTGT+CGG | 0.624310 | 1.4:+32917102 | MS.gene43369:intron |
| GGGGATAAAATGTCCAACAA+TGG | 0.624497 | 1.4:-32915899 | None:intergenic |
| CTGGTGGTCCACATAGCAGA+AGG | 0.624816 | 1.4:-32905362 | None:intergenic |
| AAAATATATATGTAACAAGG+AGG | 0.625229 | 1.4:+32912739 | MS.gene43369:CDS |
| CATGTAGCTGCTAGGCATTG+TGG | 0.628699 | 1.4:+32905408 | MS.gene43369:CDS |
| ATACACGCAATGCGAAGTCA+CGG | 0.634854 | 1.4:+32904312 | MS.gene43369:CDS |
| TGAAGAAGTGAGATTCTCCA+AGG | 0.636503 | 1.4:+32902727 | MS.gene43369:CDS |
| GTTACGAAGCTGAATTGTAG+AGG | 0.637412 | 1.4:+32902863 | MS.gene43369:CDS |
| AGCACCCTTTCCATCACCAA+GGG | 0.639210 | 1.4:-32907333 | None:intergenic |
| GATAAGTGCCTTGCAATATG+TGG | 0.639941 | 1.4:-32915845 | None:intergenic |
| GATAGTGACCTGATTCTGGA+TGG | 0.642489 | 1.4:+32915257 | MS.gene43369:CDS |
| AAAGGAAATCATCAAAGAAG+GGG | 0.646484 | 1.4:+32908114 | MS.gene43369:CDS |
| GGTTCGAGTTCGTCTTCGGG+AGG | 0.648144 | 1.4:-32902509 | None:intergenic |
| TGCTCAATTAGTTAGCACAA+TGG | 0.651026 | 1.4:+32917144 | MS.gene43369:CDS |
| CGAGTAATTCGAGTTCTTCG+GGG | 0.654717 | 1.4:-32902427 | None:intergenic |
| CTGCGACTTTAACAAAAGGA+GGG | 0.663227 | 1.4:+32917948 | MS.gene43369:CDS |
| AGTATCATCCTACCAAGGAG+AGG | 0.672223 | 1.4:-32915494 | None:intergenic |
| ACTAAAATATATATGTAACA+AGG | 0.680306 | 1.4:+32912736 | MS.gene43369:CDS |
| CAGCACCCTTTCCATCACCA+AGG | 0.682192 | 1.4:-32907334 | None:intergenic |
| ACTGTAACTTCCGAAGTCGG+AGG | 0.688921 | 1.4:-32902704 | None:intergenic |
| TCAACCAACAGTTAGTCGGG+TGG | 0.692860 | 1.4:+32911029 | MS.gene43369:CDS |
| AAAACTCACAGGTCTTGACA+GGG | 0.694198 | 1.4:-32908150 | None:intergenic |
| TAGGCATTGTGGATATCATG+TGG | 0.703509 | 1.4:+32905419 | MS.gene43369:CDS |
| GAAGAAAGAAACCCTCAATG+CGG | 0.741008 | 1.4:+32913158 | MS.gene43369:CDS |
| TGATGAACAGACAAACCGCG+AGG | 0.794628 | 1.4:+32903871 | MS.gene43369:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 32902371 | 32919110 | 32902371 | ID=MS.gene43369 |
| chr1.4 | mRNA | 32902371 | 32919110 | 32902371 | ID=MS.gene43369.t1;Parent=MS.gene43369 |
| chr1.4 | exon | 32902371 | 32902896 | 32902371 | ID=MS.gene43369.t1.exon1;Parent=MS.gene43369.t1 |
| chr1.4 | CDS | 32902371 | 32902896 | 32902371 | ID=cds.MS.gene43369.t1;Parent=MS.gene43369.t1 |
| chr1.4 | exon | 32903522 | 32903583 | 32903522 | ID=MS.gene43369.t1.exon2;Parent=MS.gene43369.t1 |
| chr1.4 | CDS | 32903522 | 32903583 | 32903522 | ID=cds.MS.gene43369.t1;Parent=MS.gene43369.t1 |
| chr1.4 | exon | 32903755 | 32903892 | 32903755 | ID=MS.gene43369.t1.exon3;Parent=MS.gene43369.t1 |
| chr1.4 | CDS | 32903755 | 32903892 | 32903755 | ID=cds.MS.gene43369.t1;Parent=MS.gene43369.t1 |
| chr1.4 | exon | 32904029 | 32904358 | 32904029 | ID=MS.gene43369.t1.exon4;Parent=MS.gene43369.t1 |
| chr1.4 | CDS | 32904029 | 32904358 | 32904029 | ID=cds.MS.gene43369.t1;Parent=MS.gene43369.t1 |
| chr1.4 | exon | 32905360 | 32905446 | 32905360 | ID=MS.gene43369.t1.exon5;Parent=MS.gene43369.t1 |
| chr1.4 | CDS | 32905360 | 32905446 | 32905360 | ID=cds.MS.gene43369.t1;Parent=MS.gene43369.t1 |
| chr1.4 | exon | 32907123 | 32907224 | 32907123 | ID=MS.gene43369.t1.exon6;Parent=MS.gene43369.t1 |
| chr1.4 | CDS | 32907123 | 32907224 | 32907123 | ID=cds.MS.gene43369.t1;Parent=MS.gene43369.t1 |
| chr1.4 | exon | 32907311 | 32907376 | 32907311 | ID=MS.gene43369.t1.exon7;Parent=MS.gene43369.t1 |
| chr1.4 | CDS | 32907311 | 32907376 | 32907311 | ID=cds.MS.gene43369.t1;Parent=MS.gene43369.t1 |
| chr1.4 | exon | 32908056 | 32908163 | 32908056 | ID=MS.gene43369.t1.exon8;Parent=MS.gene43369.t1 |
| chr1.4 | CDS | 32908056 | 32908163 | 32908056 | ID=cds.MS.gene43369.t1;Parent=MS.gene43369.t1 |
| chr1.4 | exon | 32908270 | 32908331 | 32908270 | ID=MS.gene43369.t1.exon9;Parent=MS.gene43369.t1 |
| chr1.4 | CDS | 32908270 | 32908331 | 32908270 | ID=cds.MS.gene43369.t1;Parent=MS.gene43369.t1 |
| chr1.4 | exon | 32911014 | 32911058 | 32911014 | ID=MS.gene43369.t1.exon10;Parent=MS.gene43369.t1 |
| chr1.4 | CDS | 32911014 | 32911058 | 32911014 | ID=cds.MS.gene43369.t1;Parent=MS.gene43369.t1 |
| chr1.4 | exon | 32912736 | 32912809 | 32912736 | ID=MS.gene43369.t1.exon11;Parent=MS.gene43369.t1 |
| chr1.4 | CDS | 32912736 | 32912809 | 32912736 | ID=cds.MS.gene43369.t1;Parent=MS.gene43369.t1 |
| chr1.4 | exon | 32913112 | 32913179 | 32913112 | ID=MS.gene43369.t1.exon12;Parent=MS.gene43369.t1 |
| chr1.4 | CDS | 32913112 | 32913179 | 32913112 | ID=cds.MS.gene43369.t1;Parent=MS.gene43369.t1 |
| chr1.4 | exon | 32914904 | 32914972 | 32914904 | ID=MS.gene43369.t1.exon13;Parent=MS.gene43369.t1 |
| chr1.4 | CDS | 32914904 | 32914972 | 32914904 | ID=cds.MS.gene43369.t1;Parent=MS.gene43369.t1 |
| chr1.4 | exon | 32915073 | 32915167 | 32915073 | ID=MS.gene43369.t1.exon14;Parent=MS.gene43369.t1 |
| chr1.4 | CDS | 32915073 | 32915167 | 32915073 | ID=cds.MS.gene43369.t1;Parent=MS.gene43369.t1 |
| chr1.4 | exon | 32915253 | 32915334 | 32915253 | ID=MS.gene43369.t1.exon15;Parent=MS.gene43369.t1 |
| chr1.4 | CDS | 32915253 | 32915334 | 32915253 | ID=cds.MS.gene43369.t1;Parent=MS.gene43369.t1 |
| chr1.4 | exon | 32915425 | 32915503 | 32915425 | ID=MS.gene43369.t1.exon16;Parent=MS.gene43369.t1 |
| chr1.4 | CDS | 32915425 | 32915503 | 32915425 | ID=cds.MS.gene43369.t1;Parent=MS.gene43369.t1 |
| chr1.4 | exon | 32915597 | 32915684 | 32915597 | ID=MS.gene43369.t1.exon17;Parent=MS.gene43369.t1 |
| chr1.4 | CDS | 32915597 | 32915684 | 32915597 | ID=cds.MS.gene43369.t1;Parent=MS.gene43369.t1 |
| chr1.4 | exon | 32915784 | 32915937 | 32915784 | ID=MS.gene43369.t1.exon18;Parent=MS.gene43369.t1 |
| chr1.4 | CDS | 32915784 | 32915937 | 32915784 | ID=cds.MS.gene43369.t1;Parent=MS.gene43369.t1 |
| chr1.4 | exon | 32917103 | 32917291 | 32917103 | ID=MS.gene43369.t1.exon19;Parent=MS.gene43369.t1 |
| chr1.4 | CDS | 32917103 | 32917291 | 32917103 | ID=cds.MS.gene43369.t1;Parent=MS.gene43369.t1 |
| chr1.4 | exon | 32917378 | 32917437 | 32917378 | ID=MS.gene43369.t1.exon20;Parent=MS.gene43369.t1 |
| chr1.4 | CDS | 32917378 | 32917437 | 32917378 | ID=cds.MS.gene43369.t1;Parent=MS.gene43369.t1 |
| chr1.4 | exon | 32917911 | 32918221 | 32917911 | ID=MS.gene43369.t1.exon21;Parent=MS.gene43369.t1 |
| chr1.4 | CDS | 32917911 | 32918221 | 32917911 | ID=cds.MS.gene43369.t1;Parent=MS.gene43369.t1 |
| chr1.4 | exon | 32919005 | 32919110 | 32919005 | ID=MS.gene43369.t1.exon22;Parent=MS.gene43369.t1 |
| chr1.4 | CDS | 32919005 | 32919110 | 32919005 | ID=cds.MS.gene43369.t1;Parent=MS.gene43369.t1 |
| Gene Sequence |
| Protein sequence |
