Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53708.t1 | XP_013467242.1 | 95.8 | 881 | 36 | 1 | 102 | 982 | 106 | 985 | 0.00E+00 | 1557.7 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53708.t1 | Q6NU40 | 28.7 | 907 | 484 | 21 | 138 | 981 | 194 | 1000 | 6.3e-84 | 313.9 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53708.t1 | A0A072VI46 | 95.8 | 881 | 36 | 1 | 102 | 982 | 106 | 985 | 0.0e+00 | 1557.7 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53708.t1 | MTR_1g047790 | 96.045 | 986 | 34 | 2 | 1 | 982 | 1 | 985 | 0.0 | 1951 |
MS.gene53708.t1 | MTR_4g050180 | 23.503 | 451 | 268 | 11 | 349 | 770 | 455 | 857 | 2.30e-14 | 78.2 |
MS.gene53708.t1 | MTR_4g050180 | 23.503 | 451 | 268 | 11 | 349 | 770 | 426 | 828 | 2.69e-14 | 78.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene53708.t1 | AT1G04730 | 56.790 | 891 | 323 | 13 | 102 | 981 | 103 | 942 | 0.0 | 951 |
MS.gene53708.t1 | AT1G04730 | 58.862 | 773 | 262 | 11 | 214 | 981 | 1 | 722 | 0.0 | 873 |
MS.gene53708.t1 | AT1G04730 | 58.862 | 773 | 262 | 11 | 214 | 981 | 1 | 722 | 0.0 | 873 |
MS.gene53708.t1 | AT1G04730 | 58.862 | 773 | 262 | 11 | 214 | 981 | 1 | 722 | 0.0 | 873 |
MS.gene53708.t1 | AT5G22010 | 31.944 | 216 | 103 | 5 | 346 | 546 | 390 | 576 | 4.28e-14 | 77.4 |
MS.gene53708.t1 | AT5G22010 | 31.944 | 216 | 103 | 5 | 346 | 546 | 390 | 576 | 6.86e-14 | 76.6 |
Find 201 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGGTAGCTTTATAAACTTTA+AGG | 0.108911 | 1.3:+29702107 | MS.gene53708:CDS |
AAGCTAGAGGTTTCGGTTTA+TGG | 0.116815 | 1.3:-29688633 | None:intergenic |
TCATGGATCGTTAGTGTTTC+AGG | 0.156403 | 1.3:-29688297 | None:intergenic |
GTAGAGATCTGTCATCATTT+TGG | 0.180648 | 1.3:-29703882 | None:intergenic |
ACTTCATACTTCAGGGTATT+AGG | 0.243838 | 1.3:-29702048 | None:intergenic |
TTGAAAAGAGAGAGAAAGTT+AGG | 0.252411 | 1.3:+29687115 | MS.gene53708:CDS |
CTTTCTTCTTAGAGAGAAAT+TGG | 0.253179 | 1.3:-29698024 | None:intergenic |
TTTACCTATGAAGCAGGTTT+TGG | 0.269384 | 1.3:+29702244 | MS.gene53708:CDS |
TCACCTGTCGAAGAAATTTA+AGG | 0.271243 | 1.3:-29703039 | None:intergenic |
GATTTCCTTGCTAAAACATT+AGG | 0.287862 | 1.3:-29702903 | None:intergenic |
CGGTGGTGGTTGTTCTGGTT+CGG | 0.289350 | 1.3:-29687016 | None:intergenic |
ACCGGTGCTCAGTTTGATAT+TGG | 0.299156 | 1.3:+29699805 | MS.gene53708:intron |
ATCGGAATCTGAATTCAAAT+TGG | 0.302705 | 1.3:-29687076 | None:intergenic |
CATGAATTCCATCCAGAATC+AGG | 0.306086 | 1.3:-29700178 | None:intergenic |
CATCTGCTACTTCATACTTC+AGG | 0.308025 | 1.3:-29702056 | None:intergenic |
TGGTTTACCGGTATGATATA+AGG | 0.308456 | 1.3:-29700066 | None:intergenic |
TCGAGTAATTCGAGTTCTTC+GGG | 0.309357 | 1.3:-29686913 | None:intergenic |
CAATGGGATTCTACTGTGTT+TGG | 0.310955 | 1.3:+29688547 | MS.gene53708:CDS |
AGAGAGAGAAAGTTAGGGTT+AGG | 0.325005 | 1.3:+29687121 | MS.gene53708:CDS |
GACTTTGGCCACTCGATGTT+TGG | 0.326000 | 1.3:-29700566 | None:intergenic |
TGGTGATAGTGACCTGATTC+TGG | 0.331266 | 1.3:+29700166 | MS.gene53708:CDS |
TAAGTATATTACCGGTCTTA+TGG | 0.335176 | 1.3:-29700839 | None:intergenic |
AGCTAGAGGTTTCGGTTTAT+GGG | 0.335276 | 1.3:-29688632 | None:intergenic |
ACGAAGCTGGATAGGTATTA+TGG | 0.338675 | 1.3:+29687315 | MS.gene53708:CDS |
GAAAGTTAGGGTTAGGGTTG+CGG | 0.343559 | 1.3:+29687128 | MS.gene53708:CDS |
CGATGTCATGGATATGGATA+TGG | 0.345675 | 1.3:+29686873 | MS.gene53708:CDS |
GGTGGTGGTTGTTCTGGTTC+GGG | 0.346780 | 1.3:-29687015 | None:intergenic |
CTTTCTAACAAAACACCAAT+AGG | 0.348145 | 1.3:-29688034 | None:intergenic |
GCTTCGGCCACCTCCGACTT+CGG | 0.349858 | 1.3:+29687179 | MS.gene53708:CDS |
GTTGGCGGTGGTGGTTGTTC+TGG | 0.349989 | 1.3:-29687021 | None:intergenic |
AACATTAGGTTGACTTTCAA+TGG | 0.351503 | 1.3:-29702889 | None:intergenic |
AGATTTAATTTCTCCATTGT+TGG | 0.363566 | 1.3:+29700798 | MS.gene53708:CDS |
TTTGAATTCAGATTCCGATT+TGG | 0.363594 | 1.3:+29687080 | MS.gene53708:CDS |
AAACTTTGCTTCCCTGCATC+AGG | 0.364573 | 1.3:-29692888 | None:intergenic |
AAATTTGAAGCTAGAGGTTT+CGG | 0.367950 | 1.3:-29688640 | None:intergenic |
TTCGGGTTCGAGTTCGTCTT+CGG | 0.369479 | 1.3:-29686998 | None:intergenic |
TGATTTCGATGTCATGGATA+TGG | 0.372752 | 1.3:+29686867 | MS.gene53708:CDS |
AATTGTAGAGGAGATTCTTC+TGG | 0.374605 | 1.3:+29687360 | MS.gene53708:CDS |
GTTTAAGAAGTCAAGTGTTA+AGG | 0.375440 | 1.3:+29703855 | MS.gene53708:CDS |
AAGTGCAGCTGCATGATTCT+TGG | 0.379554 | 1.3:-29702856 | None:intergenic |
GAACAAAAGGAGGGCACACC+TGG | 0.382644 | 1.3:+29688719 | MS.gene53708:CDS |
TGATGCAGGGAAGCAAAGTT+TGG | 0.385461 | 1.3:+29692890 | MS.gene53708:CDS |
TTCGAGTAATTCGAGTTCTT+CGG | 0.396296 | 1.3:-29686914 | None:intergenic |
CAAGTTTGGTGAAACTGTCT+TGG | 0.398112 | 1.3:-29702937 | None:intergenic |
TGATTCTTGGTATTCGCAAA+TGG | 0.399723 | 1.3:-29702843 | None:intergenic |
TCGGGTTCGAGTTCGTCTTC+GGG | 0.406020 | 1.3:-29686997 | None:intergenic |
TTTATAAAGCTACCGATAGA+AGG | 0.414296 | 1.3:-29702099 | None:intergenic |
TTACTGCACCGAATGGAGAT+AGG | 0.417329 | 1.3:+29687286 | MS.gene53708:CDS |
TGCACCAAAACCTGCTTCAT+AGG | 0.417809 | 1.3:-29702248 | None:intergenic |
TTTAAGAAGTCAAGTGTTAA+GGG | 0.418513 | 1.3:+29703856 | MS.gene53708:CDS |
GTTCCTTAAATTTCTTCGAC+AGG | 0.426510 | 1.3:+29703036 | MS.gene53708:CDS |
GGGAAGCAAAGTTTGGATAA+AGG | 0.427568 | 1.3:+29692897 | MS.gene53708:CDS |
CCTGGAGTAGTAATAGTAAC+AGG | 0.427634 | 1.3:+29688737 | MS.gene53708:CDS |
CGATTTGCGTCGGAGATTGA+TGG | 0.427799 | 1.3:+29687249 | MS.gene53708:CDS |
GATGAGAGTGGTAGTTCAAA+TGG | 0.439557 | 1.3:+29688781 | MS.gene53708:CDS |
AGAAATTCGCGCATTCGAAC+AGG | 0.440184 | 1.3:-29705224 | None:intergenic |
TTGTCTCTTGTTCCTTCTAT+CGG | 0.440495 | 1.3:+29702087 | MS.gene53708:CDS |
CATTGCACTCAGTGCTTTAG+CGG | 0.442706 | 1.3:+29697649 | MS.gene53708:CDS |
ACTCTTGTGGTTAAAACAAT+GGG | 0.444335 | 1.3:+29688531 | MS.gene53708:CDS |
ATCTGCTACTTCATACTTCA+GGG | 0.444478 | 1.3:-29702055 | None:intergenic |
CACTTGGCGTAATGATCTTA+AGG | 0.447217 | 1.3:-29693118 | None:intergenic |
ATCTGAATTCAAATTGGAAC+GGG | 0.449378 | 1.3:-29687070 | None:intergenic |
GCGAAATCTGTTGGCGGTGG+TGG | 0.449678 | 1.3:-29687030 | None:intergenic |
AGTGCTTTAGCGGATTATAC+AGG | 0.455389 | 1.3:+29697659 | MS.gene53708:CDS |
GCTGAAAAGAAGCCTGATGC+AGG | 0.458981 | 1.3:+29692876 | MS.gene53708:CDS |
ATTACAATTACTGTCGGATA+AGG | 0.460067 | 1.3:+29701945 | MS.gene53708:CDS |
GAGAGAGAAAGTTAGGGTTA+GGG | 0.460468 | 1.3:+29687122 | MS.gene53708:CDS |
TAAAACTCACAGGTCTTGAC+AGG | 0.461992 | 1.3:-29692965 | None:intergenic |
GATTCTTGGTATTCGCAAAT+GGG | 0.462184 | 1.3:-29702842 | None:intergenic |
CAATTATCATGATCCAGTTA+TGG | 0.463721 | 1.3:+29700217 | MS.gene53708:CDS |
CAGTTAGTCGGGTGGTAAGC+AGG | 0.464227 | 1.3:+29695907 | MS.gene53708:CDS |
GGTTTACCGGTATGATATAA+GGG | 0.466141 | 1.3:-29700065 | None:intergenic |
TGATTCAAAGCCAAAGTGTC+TGG | 0.469721 | 1.3:+29692011 | MS.gene53708:CDS |
AGCCAATCCTCTTCTTCTGC+AGG | 0.471765 | 1.3:-29687159 | None:intergenic |
GGAAAGGAAATCATCAAAGA+AGG | 0.474855 | 1.3:+29692926 | MS.gene53708:CDS |
GAAGAAATTTAAGGAACTCC+TGG | 0.475123 | 1.3:-29703030 | None:intergenic |
TACCTTCTGTTCTGGTGCAC+CGG | 0.476036 | 1.3:-29688839 | None:intergenic |
AAGTTTGGATAAAGGACAAA+TGG | 0.476134 | 1.3:+29692905 | MS.gene53708:CDS |
CAGTCTTGAAGTTTATGATC+TGG | 0.476462 | 1.3:+29700352 | MS.gene53708:CDS |
TGTTCAACCAACAGTTAGTC+GGG | 0.477153 | 1.3:+29695896 | MS.gene53708:CDS |
TCGCGATAACGTCTTATCCT+TGG | 0.485922 | 1.3:-29687229 | None:intergenic |
TTGAAATCTTACCGCATTGA+GGG | 0.487130 | 1.3:-29698050 | None:intergenic |
GATATTGGTTCGCAAGTTGT+TGG | 0.489356 | 1.3:+29699820 | MS.gene53708:CDS |
ATATACCTGTGATATGACTT+TGG | 0.490373 | 1.3:-29700581 | None:intergenic |
CAGGAACATCTACAACACTT+TGG | 0.491795 | 1.3:-29688278 | None:intergenic |
GGGCATGACGTTATTGAGGC+TGG | 0.495747 | 1.3:+29702804 | MS.gene53708:CDS |
TACTCTTGTGGTTAAAACAA+TGG | 0.496335 | 1.3:+29688530 | MS.gene53708:CDS |
GCTTTCAGAACTAGCTTCCA+AGG | 0.500607 | 1.3:-29688256 | None:intergenic |
AAGTTTGGTGAAACTGTCTT+GGG | 0.500765 | 1.3:-29702936 | None:intergenic |
AATTCGAGTTCTTCGGGGAG+AGG | 0.501144 | 1.3:-29686907 | None:intergenic |
AACATCAGAAGAATCCAAAT+CGG | 0.501769 | 1.3:-29687094 | None:intergenic |
GATCTTGCTGTAGAACCTAT+TGG | 0.501797 | 1.3:+29688019 | MS.gene53708:intron |
ATAGAAAATACCAGACACTT+TGG | 0.502044 | 1.3:-29692021 | None:intergenic |
GAACAAAAGGAGGGCACAGT+TGG | 0.504795 | 1.3:+29688668 | MS.gene53708:CDS |
AAAGTAGTGGTCATCATCAT+CGG | 0.508984 | 1.3:-29686965 | None:intergenic |
TGAAAAGAGAGAGAAAGTTA+GGG | 0.509596 | 1.3:+29687116 | MS.gene53708:CDS |
CTAGGAAAATTTGAAGCTAG+AGG | 0.512122 | 1.3:-29688646 | None:intergenic |
GACGTTATCGCGATTTGCGT+CGG | 0.512410 | 1.3:+29687239 | MS.gene53708:CDS |
AGCACTGAGTGCAATGGCAT+TGG | 0.515089 | 1.3:-29697642 | None:intergenic |
TTCGCAAGTTGTTGGTCAGA+AGG | 0.515705 | 1.3:+29699828 | MS.gene53708:CDS |
CTCCTGCAGAAGAAGAGGAT+TGG | 0.516624 | 1.3:+29687157 | MS.gene53708:CDS |
AATGGATGATTTCGATGTCA+TGG | 0.519594 | 1.3:+29686861 | None:intergenic |
AACAACGATGATGGAAAAGA+TGG | 0.521725 | 1.3:+29700702 | MS.gene53708:CDS |
GCTTTCTTTACCTATGAAGC+AGG | 0.522251 | 1.3:+29702238 | MS.gene53708:CDS |
AAAACTGCGACTTTAACAAA+AGG | 0.522898 | 1.3:+29702780 | MS.gene53708:CDS |
CAGAAGAAGAGGATTGGCTT+CGG | 0.525407 | 1.3:+29687163 | MS.gene53708:CDS |
TAGGTATCGAACAACGATGA+TGG | 0.526147 | 1.3:+29700693 | MS.gene53708:intron |
AAGTAGTGGTCATCATCATC+GGG | 0.530659 | 1.3:-29686964 | None:intergenic |
ACACAACAAATGCCTCTCCT+TGG | 0.533973 | 1.3:+29700395 | MS.gene53708:CDS |
GTATAAACCCTATCTCCATT+CGG | 0.535127 | 1.3:-29687294 | None:intergenic |
TACTGCACCGAATGGAGATA+GGG | 0.536495 | 1.3:+29687287 | MS.gene53708:CDS |
AGATAGGGTTTATACGAAGC+TGG | 0.538089 | 1.3:+29687302 | MS.gene53708:CDS |
TGGTAACTTACTTGGCCACT+TGG | 0.539907 | 1.3:-29693134 | None:intergenic |
CCTGTTACTATTACTACTCC+AGG | 0.540186 | 1.3:-29688737 | None:intergenic |
AATATATATGTAACAAGGAG+GGG | 0.542801 | 1.3:+29697612 | MS.gene53708:CDS |
TGATGGAAAGGGTGCTGTGG+AGG | 0.543413 | 1.3:+29692145 | MS.gene53708:CDS |
TAGGTAAAGAAAGCGCGTAA+TGG | 0.543937 | 1.3:-29702229 | None:intergenic |
TGTTCTCGACATCTGGAAAG+AGG | 0.544296 | 1.3:+29699864 | MS.gene53708:CDS |
AAATCTTCAACAAAGGAAGT+AGG | 0.544311 | 1.3:-29700781 | None:intergenic |
TAGGTGGTGGATGAAATTGA+TGG | 0.544828 | 1.3:+29692113 | MS.gene53708:intron |
ATCCCCACCATCCATAAGAC+CGG | 0.546602 | 1.3:+29700828 | MS.gene53708:CDS |
GGGTTTATACGAAGCTGGAT+AGG | 0.547407 | 1.3:+29687307 | MS.gene53708:CDS |
ATTGAAATCTTACCGCATTG+AGG | 0.554309 | 1.3:-29698051 | None:intergenic |
TTGTTCAACCAACAGTTAGT+CGG | 0.555383 | 1.3:+29695895 | MS.gene53708:CDS |
GTCTATGACAGGTACTCTTG+TGG | 0.556382 | 1.3:+29688518 | MS.gene53708:intron |
TACCGGTCTTATGGATGGTG+GGG | 0.557624 | 1.3:-29700830 | None:intergenic |
ATTGATGGAGCCCTTGGTGA+TGG | 0.558634 | 1.3:+29692128 | MS.gene53708:CDS |
AATGCGAAGTCACGGAATAC+CGG | 0.559927 | 1.3:+29688820 | MS.gene53708:CDS |
AGAAATTAAATCTTCAACAA+AGG | 0.560439 | 1.3:-29700788 | None:intergenic |
TTACCGGTCTTATGGATGGT+GGG | 0.560914 | 1.3:-29700831 | None:intergenic |
AAATATATATGTAACAAGGA+GGG | 0.561991 | 1.3:+29697611 | MS.gene53708:CDS |
TTTAAGAGTACAGATGAGAG+TGG | 0.564729 | 1.3:+29688769 | MS.gene53708:CDS |
TGGTGATGGAAAGGGTGCTG+TGG | 0.566395 | 1.3:+29692142 | MS.gene53708:CDS |
TGTACTCCCTTATATCATAC+CGG | 0.566517 | 1.3:+29700059 | MS.gene53708:CDS |
CGCTAAAGCACTGAGTGCAA+TGG | 0.568087 | 1.3:-29697648 | None:intergenic |
TTGTGGATATCATGTGGTTG+AGG | 0.568428 | 1.3:+29690204 | MS.gene53708:CDS |
TCAACTGTAACTTCCGAAGT+CGG | 0.568857 | 1.3:-29687192 | None:intergenic |
TGGCGTAATGATCTTAAGGC+AGG | 0.570004 | 1.3:-29693114 | None:intergenic |
TGACAGATCCTTCTGCTATG+TGG | 0.570271 | 1.3:+29690133 | MS.gene53708:intron |
GAAAGGAAATCATCAAAGAA+GGG | 0.570750 | 1.3:+29692927 | MS.gene53708:CDS |
ATCTTAAGGCAGGTGCATAT+AGG | 0.572649 | 1.3:-29693104 | None:intergenic |
TGATGTAGAACGATCATCAC+TGG | 0.573132 | 1.3:-29691938 | None:intergenic |
GATGAAATTGATGGAGCCCT+TGG | 0.575535 | 1.3:+29692122 | MS.gene53708:CDS |
AGGAGGGCATGACGTTATTG+AGG | 0.578081 | 1.3:+29702800 | MS.gene53708:CDS |
AGATGCTCCTGCAGAAGAAG+AGG | 0.578687 | 1.3:+29687152 | MS.gene53708:CDS |
CTTACCACCCGACTAACTGT+TGG | 0.578892 | 1.3:-29695903 | None:intergenic |
TACCGGTGCACCAGAACAGA+AGG | 0.583983 | 1.3:+29688837 | MS.gene53708:CDS |
GAGAAGATCAGTAAAAGACT+TGG | 0.584087 | 1.3:-29688346 | None:intergenic |
AGATCAAGAGAATTTCGCTA+AGG | 0.584578 | 1.3:+29688060 | MS.gene53708:CDS |
GTAACTTCCGAAGTCGGAGG+TGG | 0.588749 | 1.3:-29687186 | None:intergenic |
TGTACAATAATTGCTATGGT+AGG | 0.589957 | 1.3:-29700518 | None:intergenic |
AATCTGAATTCAAATTGGAA+CGG | 0.592683 | 1.3:-29687071 | None:intergenic |
GGTGGCATTACAATTACTGT+CGG | 0.593069 | 1.3:+29701939 | MS.gene53708:intron |
TGGATAAAGGACAAATGGAA+AGG | 0.593258 | 1.3:+29692910 | MS.gene53708:CDS |
GGAGCCCTTGGTGATGGAAA+GGG | 0.595218 | 1.3:+29692134 | MS.gene53708:CDS |
TGACTGTTAGCGAAATCTGT+TGG | 0.596289 | 1.3:-29687039 | None:intergenic |
TATATTACCGGTCTTATGGA+TGG | 0.596794 | 1.3:-29700835 | None:intergenic |
CTTAAGATCATTACGCCAAG+TGG | 0.597064 | 1.3:+29693119 | MS.gene53708:CDS |
ATATATATGTAACAAGGAGG+GGG | 0.598305 | 1.3:+29697613 | MS.gene53708:CDS |
ATTACCGGTCTTATGGATGG+TGG | 0.598649 | 1.3:-29700832 | None:intergenic |
CTGTTAGCGAAATCTGTTGG+CGG | 0.598908 | 1.3:-29687036 | None:intergenic |
AAATTTAAGGAACTCCTGGA+TGG | 0.599268 | 1.3:-29703026 | None:intergenic |
CATGGATATGGATATGGACA+TGG | 0.601883 | 1.3:+29686879 | MS.gene53708:CDS |
CTGAAAAGAAGCCTGATGCA+GGG | 0.603143 | 1.3:+29692877 | MS.gene53708:CDS |
GATTGATGGTGAAGTTATGT+CGG | 0.603265 | 1.3:+29687263 | MS.gene53708:CDS |
TGGAGCCCTTGGTGATGGAA+AGG | 0.603757 | 1.3:+29692133 | MS.gene53708:CDS |
ACTGCGACTTTAACAAAAGG+AGG | 0.605355 | 1.3:+29702783 | MS.gene53708:CDS |
AGAAGATCAGTAAAAGACTT+GGG | 0.607880 | 1.3:-29688345 | None:intergenic |
CAAGACAAAACTGCTAGACA+TGG | 0.608832 | 1.3:+29702989 | MS.gene53708:CDS |
AAATATCGCCACATATTGCA+AGG | 0.608936 | 1.3:+29700749 | MS.gene53708:CDS |
CGGGAGGATTGTAAAAGTAG+TGG | 0.611377 | 1.3:-29686978 | None:intergenic |
TTCAAAAGCCAAACATCGAG+TGG | 0.613266 | 1.3:+29700558 | MS.gene53708:CDS |
AGTGGCCAAAGTCATATCAC+AGG | 0.614743 | 1.3:+29700576 | MS.gene53708:CDS |
CACTTGCACATGTAGCTGCT+AGG | 0.615704 | 1.3:+29690179 | MS.gene53708:CDS |
ATGTCGGTTACTGCACCGAA+TGG | 0.618081 | 1.3:+29687279 | MS.gene53708:CDS |
GTATGATATAAGGGAGTACA+AGG | 0.619033 | 1.3:-29700056 | None:intergenic |
TTAGCGAAATCTGTTGGCGG+TGG | 0.621962 | 1.3:-29687033 | None:intergenic |
ATGATGTACAATAATTGCTA+TGG | 0.623036 | 1.3:-29700522 | None:intergenic |
GGGGATAAAATGTCCAACAA+TGG | 0.624497 | 1.3:-29700811 | None:intergenic |
AAAATATATATGTAACAAGG+AGG | 0.625229 | 1.3:+29697610 | MS.gene53708:CDS |
CATGTAGCTGCTAGGCATTG+TGG | 0.628699 | 1.3:+29690187 | MS.gene53708:CDS |
ATACACGCAATGCGAAGTCA+CGG | 0.634854 | 1.3:+29688812 | MS.gene53708:CDS |
TGAAGAAGTGAGATTCTCCA+AGG | 0.636503 | 1.3:+29687212 | MS.gene53708:CDS |
GTTACGAAGCTGAATTGTAG+AGG | 0.637412 | 1.3:+29687348 | MS.gene53708:CDS |
AGCACCCTTTCCATCACCAA+GGG | 0.639210 | 1.3:-29692138 | None:intergenic |
GATAAGTGCCTTGCAATATG+TGG | 0.639941 | 1.3:-29700757 | None:intergenic |
GATAGTGACCTGATTCTGGA+TGG | 0.642489 | 1.3:+29700170 | MS.gene53708:CDS |
GGTTCGAGTTCGTCTTCGGG+AGG | 0.648144 | 1.3:-29686994 | None:intergenic |
TGCTCAATTAGTTAGCACAA+TGG | 0.651026 | 1.3:+29701981 | MS.gene53708:CDS |
CGAGTAATTCGAGTTCTTCG+GGG | 0.654717 | 1.3:-29686912 | None:intergenic |
CTGCGACTTTAACAAAAGGA+GGG | 0.663227 | 1.3:+29702784 | MS.gene53708:CDS |
AGTATCATCCTACCAAGGAG+AGG | 0.672223 | 1.3:-29700407 | None:intergenic |
ACTAAAATATATATGTAACA+AGG | 0.680306 | 1.3:+29697607 | MS.gene53708:CDS |
CAGCACCCTTTCCATCACCA+AGG | 0.682192 | 1.3:-29692139 | None:intergenic |
ACTGTAACTTCCGAAGTCGG+AGG | 0.688921 | 1.3:-29687189 | None:intergenic |
TCAACCAACAGTTAGTCGGG+TGG | 0.692860 | 1.3:+29695899 | MS.gene53708:CDS |
AAAACTCACAGGTCTTGACA+GGG | 0.694198 | 1.3:-29692964 | None:intergenic |
TAGGCATTGTGGATATCATG+TGG | 0.703509 | 1.3:+29690198 | MS.gene53708:CDS |
GAAGAAAGAAACCCTCAATG+CGG | 0.741008 | 1.3:+29698039 | MS.gene53708:CDS |
AGTTCATCTGAACCACATCG+AGG | 0.753488 | 1.3:-29691978 | None:intergenic |
TGATGAACAGACAAACCGCG+AGG | 0.794628 | 1.3:+29688371 | MS.gene53708:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.3 | gene | 29686862 | 29705253 | 29686862 | ID=MS.gene53708 |
chr1.3 | mRNA | 29686862 | 29705253 | 29686862 | ID=MS.gene53708.t1;Parent=MS.gene53708 |
chr1.3 | exon | 29686862 | 29687381 | 29686862 | ID=MS.gene53708.t1.exon1;Parent=MS.gene53708.t1 |
chr1.3 | CDS | 29686862 | 29687381 | 29686862 | ID=cds.MS.gene53708.t1;Parent=MS.gene53708.t1 |
chr1.3 | exon | 29688020 | 29688081 | 29688020 | ID=MS.gene53708.t1.exon2;Parent=MS.gene53708.t1 |
chr1.3 | CDS | 29688020 | 29688081 | 29688020 | ID=cds.MS.gene53708.t1;Parent=MS.gene53708.t1 |
chr1.3 | exon | 29688255 | 29688392 | 29688255 | ID=MS.gene53708.t1.exon3;Parent=MS.gene53708.t1 |
chr1.3 | CDS | 29688255 | 29688392 | 29688255 | ID=cds.MS.gene53708.t1;Parent=MS.gene53708.t1 |
chr1.3 | exon | 29688529 | 29688858 | 29688529 | ID=MS.gene53708.t1.exon4;Parent=MS.gene53708.t1 |
chr1.3 | CDS | 29688529 | 29688858 | 29688529 | ID=cds.MS.gene53708.t1;Parent=MS.gene53708.t1 |
chr1.3 | exon | 29690139 | 29690225 | 29690139 | ID=MS.gene53708.t1.exon5;Parent=MS.gene53708.t1 |
chr1.3 | CDS | 29690139 | 29690225 | 29690139 | ID=cds.MS.gene53708.t1;Parent=MS.gene53708.t1 |
chr1.3 | exon | 29691931 | 29692032 | 29691931 | ID=MS.gene53708.t1.exon6;Parent=MS.gene53708.t1 |
chr1.3 | CDS | 29691931 | 29692032 | 29691931 | ID=cds.MS.gene53708.t1;Parent=MS.gene53708.t1 |
chr1.3 | exon | 29692116 | 29692181 | 29692116 | ID=MS.gene53708.t1.exon7;Parent=MS.gene53708.t1 |
chr1.3 | CDS | 29692116 | 29692181 | 29692116 | ID=cds.MS.gene53708.t1;Parent=MS.gene53708.t1 |
chr1.3 | exon | 29692870 | 29692977 | 29692870 | ID=MS.gene53708.t1.exon8;Parent=MS.gene53708.t1 |
chr1.3 | CDS | 29692870 | 29692977 | 29692870 | ID=cds.MS.gene53708.t1;Parent=MS.gene53708.t1 |
chr1.3 | exon | 29693084 | 29693145 | 29693084 | ID=MS.gene53708.t1.exon9;Parent=MS.gene53708.t1 |
chr1.3 | CDS | 29693084 | 29693145 | 29693084 | ID=cds.MS.gene53708.t1;Parent=MS.gene53708.t1 |
chr1.3 | exon | 29695884 | 29695928 | 29695884 | ID=MS.gene53708.t1.exon10;Parent=MS.gene53708.t1 |
chr1.3 | CDS | 29695884 | 29695928 | 29695884 | ID=cds.MS.gene53708.t1;Parent=MS.gene53708.t1 |
chr1.3 | exon | 29697607 | 29697680 | 29697607 | ID=MS.gene53708.t1.exon11;Parent=MS.gene53708.t1 |
chr1.3 | CDS | 29697607 | 29697680 | 29697607 | ID=cds.MS.gene53708.t1;Parent=MS.gene53708.t1 |
chr1.3 | exon | 29697993 | 29698060 | 29697993 | ID=MS.gene53708.t1.exon12;Parent=MS.gene53708.t1 |
chr1.3 | CDS | 29697993 | 29698060 | 29697993 | ID=cds.MS.gene53708.t1;Parent=MS.gene53708.t1 |
chr1.3 | exon | 29699817 | 29699885 | 29699817 | ID=MS.gene53708.t1.exon13;Parent=MS.gene53708.t1 |
chr1.3 | CDS | 29699817 | 29699885 | 29699817 | ID=cds.MS.gene53708.t1;Parent=MS.gene53708.t1 |
chr1.3 | exon | 29699986 | 29700080 | 29699986 | ID=MS.gene53708.t1.exon14;Parent=MS.gene53708.t1 |
chr1.3 | CDS | 29699986 | 29700080 | 29699986 | ID=cds.MS.gene53708.t1;Parent=MS.gene53708.t1 |
chr1.3 | exon | 29700166 | 29700247 | 29700166 | ID=MS.gene53708.t1.exon15;Parent=MS.gene53708.t1 |
chr1.3 | CDS | 29700166 | 29700247 | 29700166 | ID=cds.MS.gene53708.t1;Parent=MS.gene53708.t1 |
chr1.3 | exon | 29700338 | 29700416 | 29700338 | ID=MS.gene53708.t1.exon16;Parent=MS.gene53708.t1 |
chr1.3 | CDS | 29700338 | 29700416 | 29700338 | ID=cds.MS.gene53708.t1;Parent=MS.gene53708.t1 |
chr1.3 | exon | 29700510 | 29700597 | 29700510 | ID=MS.gene53708.t1.exon17;Parent=MS.gene53708.t1 |
chr1.3 | CDS | 29700510 | 29700597 | 29700510 | ID=cds.MS.gene53708.t1;Parent=MS.gene53708.t1 |
chr1.3 | exon | 29700696 | 29700849 | 29700696 | ID=MS.gene53708.t1.exon18;Parent=MS.gene53708.t1 |
chr1.3 | CDS | 29700696 | 29700849 | 29700696 | ID=cds.MS.gene53708.t1;Parent=MS.gene53708.t1 |
chr1.3 | exon | 29701940 | 29702128 | 29701940 | ID=MS.gene53708.t1.exon19;Parent=MS.gene53708.t1 |
chr1.3 | CDS | 29701940 | 29702128 | 29701940 | ID=cds.MS.gene53708.t1;Parent=MS.gene53708.t1 |
chr1.3 | exon | 29702215 | 29702274 | 29702215 | ID=MS.gene53708.t1.exon20;Parent=MS.gene53708.t1 |
chr1.3 | CDS | 29702215 | 29702274 | 29702215 | ID=cds.MS.gene53708.t1;Parent=MS.gene53708.t1 |
chr1.3 | exon | 29702747 | 29703057 | 29702747 | ID=MS.gene53708.t1.exon21;Parent=MS.gene53708.t1 |
chr1.3 | CDS | 29702747 | 29703057 | 29702747 | ID=cds.MS.gene53708.t1;Parent=MS.gene53708.t1 |
chr1.3 | exon | 29703855 | 29703960 | 29703855 | ID=MS.gene53708.t1.exon22;Parent=MS.gene53708.t1 |
chr1.3 | CDS | 29703855 | 29703960 | 29703855 | ID=cds.MS.gene53708.t1;Parent=MS.gene53708.t1 |
chr1.3 | exon | 29705200 | 29705253 | 29705200 | ID=MS.gene53708.t1.exon23;Parent=MS.gene53708.t1 |
chr1.3 | CDS | 29705200 | 29705253 | 29705200 | ID=cds.MS.gene53708.t1;Parent=MS.gene53708.t1 |
Gene Sequence |
Protein sequence |