Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41343.t1 | XP_013467242.1 | 96 | 881 | 35 | 0 | 102 | 982 | 105 | 985 | 0.00E+00 | 1548.1 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41343.t1 | Q6NU40 | 28.6 | 921 | 496 | 23 | 123 | 981 | 180 | 1000 | 7.6e-82 | 307.0 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41343.t1 | A0A072VI46 | 96.0 | 881 | 35 | 0 | 102 | 982 | 105 | 985 | 0.0e+00 | 1548.1 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41343.t1 | MTR_1g047790 | 96.345 | 985 | 33 | 2 | 1 | 982 | 1 | 985 | 0.0 | 1959 |
MS.gene41343.t1 | MTR_4g050180 | 23.503 | 451 | 268 | 11 | 349 | 770 | 455 | 857 | 2.08e-14 | 78.6 |
MS.gene41343.t1 | MTR_4g050180 | 23.503 | 451 | 268 | 11 | 349 | 770 | 426 | 828 | 2.83e-14 | 78.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene41343.t1 | AT1G04730 | 55.649 | 947 | 344 | 18 | 53 | 981 | 54 | 942 | 0.0 | 962 |
MS.gene41343.t1 | AT1G04730 | 58.991 | 773 | 261 | 11 | 214 | 981 | 1 | 722 | 0.0 | 876 |
MS.gene41343.t1 | AT1G04730 | 58.991 | 773 | 261 | 11 | 214 | 981 | 1 | 722 | 0.0 | 876 |
MS.gene41343.t1 | AT1G04730 | 58.991 | 773 | 261 | 11 | 214 | 981 | 1 | 722 | 0.0 | 876 |
MS.gene41343.t1 | AT5G22010 | 31.944 | 216 | 103 | 5 | 346 | 546 | 390 | 576 | 4.28e-14 | 77.4 |
MS.gene41343.t1 | AT5G22010 | 31.944 | 216 | 103 | 5 | 346 | 546 | 390 | 576 | 6.52e-14 | 77.0 |
Find 204 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CGGCAGCTTTATAAACTTTA+AGG | 0.086280 | 1.2:+30975859 | MS.gene41343:CDS |
AAGCTAGAGGTTTCGGTTTA+TGG | 0.116815 | 1.2:-30962719 | None:intergenic |
TCATGGACCGTTAGTGTTTC+AGG | 0.171737 | 1.2:-30962383 | None:intergenic |
CTTTCTAACAAAACACTAAT+AGG | 0.222514 | 1.2:-30962120 | None:intergenic |
ACTTCATACTTCAGGGTATT+AGG | 0.243838 | 1.2:-30975800 | None:intergenic |
CTTTCTTCTTAGAGAGAAAT+TGG | 0.253179 | 1.2:-30971735 | None:intergenic |
GGCGGTGGTTGTTCGGGTTC+GGG | 0.262383 | 1.2:-30961115 | None:intergenic |
TTTACCTATGAAGCAGGTTT+TGG | 0.269384 | 1.2:+30975985 | MS.gene41343:CDS |
TCACCTGTCGAAGAAATTTA+AGG | 0.271243 | 1.2:-30976781 | None:intergenic |
TGGCGGTGGTTGTTCGGGTT+CGG | 0.275661 | 1.2:-30961116 | None:intergenic |
ACTGGTGCTCAGTTTGATAT+TGG | 0.281263 | 1.2:+30973481 | MS.gene41343:intron |
GATTTCCTTGCTAAAACATT+AGG | 0.287862 | 1.2:-30976645 | None:intergenic |
GTAGAGCTCTGTCATCATTT+TGG | 0.289374 | 1.2:-30977609 | None:intergenic |
TCGGGTTCGTGTTCGTCTTC+GGG | 0.291494 | 1.2:-30961097 | None:intergenic |
ATCTGTTGGCGGTGGTTGTT+CGG | 0.297612 | 1.2:-30961122 | None:intergenic |
CATGAATTCCATCCAGAATC+AGG | 0.306086 | 1.2:-30973854 | None:intergenic |
TTCGGGTTCGTGTTCGTCTT+CGG | 0.307271 | 1.2:-30961098 | None:intergenic |
CATCTGCTACTTCATACTTC+AGG | 0.308025 | 1.2:-30975808 | None:intergenic |
TGGTTTACCGGTATGATATA+AGG | 0.308456 | 1.2:-30973742 | None:intergenic |
TCGAGTAATTCGAGTTCTTC+GGG | 0.309357 | 1.2:-30961013 | None:intergenic |
CAATGGGATTCTACTGTGTT+TGG | 0.310955 | 1.2:+30962633 | MS.gene41343:CDS |
TAAGTATATTACCGGTCTTA+TGG | 0.317117 | 1.2:-30974516 | None:intergenic |
TGGTGATAGTGACCTGATTC+TGG | 0.331266 | 1.2:+30973842 | MS.gene41343:CDS |
GACTTTGGCCACTCAATGTT+TGG | 0.335215 | 1.2:-30974242 | None:intergenic |
AGCTAGAGGTTTCGGTTTAT+GGG | 0.335276 | 1.2:-30962718 | None:intergenic |
ACGAAGCTGGATAGGTATTA+TGG | 0.338675 | 1.2:+30961409 | MS.gene41343:CDS |
TCTGTTGGCGGTGGTTGTTC+GGG | 0.341153 | 1.2:-30961121 | None:intergenic |
CGATGTCATGGATATGGATA+TGG | 0.345675 | 1.2:+30960967 | MS.gene41343:CDS |
AACATTAGGTTGACTTTCAA+TGG | 0.351503 | 1.2:-30976631 | None:intergenic |
AGACTTAATTTCTCCATTGT+TGG | 0.358311 | 1.2:+30974475 | MS.gene41343:CDS |
AAACTTTGCTTCCCTGCATC+AGG | 0.364573 | 1.2:-30966664 | None:intergenic |
AAATTTGAAGCTAGAGGTTT+CGG | 0.367950 | 1.2:-30962726 | None:intergenic |
TGATTTCGATGTCATGGATA+TGG | 0.372752 | 1.2:+30960961 | MS.gene41343:CDS |
AATTGTAGAGGAGATTCTTC+TGG | 0.374605 | 1.2:+30961454 | MS.gene41343:CDS |
GTTTAAGAAGTCAAGTGTTA+AGG | 0.375440 | 1.2:+30977582 | MS.gene41343:CDS |
AAAAGTTAGGGTTAGGGTTG+CGG | 0.379315 | 1.2:+30961225 | MS.gene41343:CDS |
AAGTGCAGCTGCATGATTCT+TGG | 0.379554 | 1.2:-30976598 | None:intergenic |
GCTATGTGGACCACCAGGTC+TGG | 0.382139 | 1.2:+30963954 | MS.gene41343:CDS |
GAACAAAAGGAGGGCACACC+TGG | 0.382644 | 1.2:+30962805 | MS.gene41343:CDS |
TTTATAAAGCTGCCGATAGA+AGG | 0.384388 | 1.2:-30975851 | None:intergenic |
TGATGCAGGGAAGCAAAGTT+TGG | 0.385461 | 1.2:+30966666 | MS.gene41343:CDS |
GCTTCGGCCACCTCCGACTT+CGG | 0.389145 | 1.2:+30961276 | MS.gene41343:CDS |
TTCGAGTAATTCGAGTTCTT+CGG | 0.396296 | 1.2:-30961014 | None:intergenic |
TGATTCTTGGTATTCGCAAA+TGG | 0.399723 | 1.2:-30976585 | None:intergenic |
CAAGTTTGGTGAAATTGTCT+TGG | 0.403380 | 1.2:-30976679 | None:intergenic |
TGCACCAAAACCTGCTTCAT+AGG | 0.417809 | 1.2:-30975989 | None:intergenic |
TCACCATTCGGCGCAGTAAC+CGG | 0.423448 | 1.2:-30961376 | None:intergenic |
GTTCCTTAAATTTCTTCGAC+AGG | 0.426510 | 1.2:+30976778 | MS.gene41343:CDS |
GGGAAGCAAAGTTTGGATAA+AGG | 0.427568 | 1.2:+30966673 | MS.gene41343:CDS |
CCTGGAGTAGTAATAGTAAC+AGG | 0.427634 | 1.2:+30962823 | MS.gene41343:CDS |
CGATTTGCGTCGGAGATTGA+TGG | 0.427799 | 1.2:+30961343 | MS.gene41343:CDS |
AAATTTAAGGAACTCCTAGA+TGG | 0.428279 | 1.2:-30976768 | None:intergenic |
TTTAAGAAGTCAAGTGTTAA+GGG | 0.430291 | 1.2:+30977583 | MS.gene41343:CDS |
TTACTGCGCCGAATGGTGAT+AGG | 0.430846 | 1.2:+30961380 | MS.gene41343:CDS |
TTGTCTCTTGTTCCTTCTAT+CGG | 0.433258 | 1.2:+30975839 | MS.gene41343:CDS |
AGGACAGAAATTCGCGCATT+CGG | 0.439141 | 1.2:-30978298 | None:intergenic |
CATTGCACTCAGTGCTTTAG+CGG | 0.442706 | 1.2:+30971370 | MS.gene41343:CDS |
ACTCTTGTGGTTAAAACAAT+GGG | 0.444335 | 1.2:+30962617 | MS.gene41343:CDS |
ATCTGCTACTTCATACTTCA+GGG | 0.444478 | 1.2:-30975807 | None:intergenic |
CACTTGGCGTAATGATCTTA+AGG | 0.447217 | 1.2:-30966894 | None:intergenic |
GATGAGACTGGTAGTTCAAA+TGG | 0.448581 | 1.2:+30962867 | MS.gene41343:CDS |
AGTGCTTTAGCGGATTATAC+AGG | 0.455389 | 1.2:+30971380 | MS.gene41343:CDS |
TATGGATATGGACATGGAAA+TGG | 0.455506 | 1.2:+30960979 | MS.gene41343:CDS |
GCTGAAAAGAAGCCTGATGC+AGG | 0.458981 | 1.2:+30966652 | MS.gene41343:CDS |
TTCCCGTTCGAATTCAGATT+CGG | 0.459530 | 1.2:+30961165 | MS.gene41343:CDS |
TAAAACTCACAGGTCTTGAC+AGG | 0.461992 | 1.2:-30966741 | None:intergenic |
GATTCTTGGTATTCGCAAAT+GGG | 0.462184 | 1.2:-30976584 | None:intergenic |
CAATTATCATGATCCAGTTA+TGG | 0.463721 | 1.2:+30973893 | MS.gene41343:CDS |
CAGTTAGTCGGGTGGTAAGC+AGG | 0.464227 | 1.2:+30969627 | MS.gene41343:CDS |
GGTTTACCGGTATGATATAA+GGG | 0.466141 | 1.2:-30973741 | None:intergenic |
TGATTCAAAGCCAAAGTGTC+TGG | 0.469721 | 1.2:+30965793 | MS.gene41343:CDS |
AGCCAATCCTCTTCTTCTGC+AGG | 0.471765 | 1.2:-30961256 | None:intergenic |
TCGCGATAACCTCTTATCCT+TGG | 0.472647 | 1.2:-30961323 | None:intergenic |
GGAAAGGAAATCATCAAAGA+AGG | 0.474855 | 1.2:+30966702 | MS.gene41343:CDS |
TACCTTCTGTTCTGGTGCAC+CGG | 0.476036 | 1.2:-30962925 | None:intergenic |
AAGTTTGGATAAAGGACAAA+TGG | 0.476134 | 1.2:+30966681 | MS.gene41343:CDS |
CAGTCTTGAAGTTTATGATC+TGG | 0.476462 | 1.2:+30974028 | MS.gene41343:CDS |
TGTTCAACCAACAGTTAGTC+GGG | 0.477153 | 1.2:+30969616 | MS.gene41343:CDS |
TACTGCGCCGAATGGTGATA+GGG | 0.481091 | 1.2:+30961381 | MS.gene41343:CDS |
CTATGTGGACCACCAGGTCT+GGG | 0.481166 | 1.2:+30963955 | MS.gene41343:CDS |
AAGTTTGGTGAAATTGTCTT+GGG | 0.486340 | 1.2:-30976678 | None:intergenic |
TTGAAATCTTACCGCATTGA+GGG | 0.487130 | 1.2:-30971761 | None:intergenic |
GATATTGGTTCGCAAGTTGT+TGG | 0.489356 | 1.2:+30973496 | MS.gene41343:CDS |
CAGGAACATCTACAACACTT+TGG | 0.491795 | 1.2:-30962364 | None:intergenic |
ATCCGAATCTGAATTCGAAC+GGG | 0.492703 | 1.2:-30961167 | None:intergenic |
AGAAATTCGCGCATTCGGAC+AGG | 0.495293 | 1.2:-30978293 | None:intergenic |
ATTACAACTACTGTCGGATA+AGG | 0.495520 | 1.2:+30975697 | MS.gene41343:CDS |
GGGCATGACGTTATTGAGGC+TGG | 0.495747 | 1.2:+30976546 | MS.gene41343:CDS |
TACTCTTGTGGTTAAAACAA+TGG | 0.496335 | 1.2:+30962616 | MS.gene41343:CDS |
TGAGATTCTCCAAGGATAAG+AGG | 0.498717 | 1.2:+30961314 | MS.gene41343:CDS |
GCTTTCAGAACTAGCTTCCA+AGG | 0.500607 | 1.2:-30962342 | None:intergenic |
AATTCGAGTTCTTCGGGGAG+AGG | 0.501144 | 1.2:-30961007 | None:intergenic |
ATAGAAAATACCAGACACTT+TGG | 0.502044 | 1.2:-30965803 | None:intergenic |
GAACAAAAGGAGGGCACAGT+TGG | 0.504795 | 1.2:+30962754 | MS.gene41343:CDS |
GTATACCTGTGATATGACTT+TGG | 0.506724 | 1.2:-30974257 | None:intergenic |
AAAGTAGTGGTCATCATCAT+CGG | 0.508984 | 1.2:-30961065 | None:intergenic |
CTAGGAAAATTTGAAGCTAG+AGG | 0.512122 | 1.2:-30962732 | None:intergenic |
AGCACTGAGTGCAATGGCAT+TGG | 0.515089 | 1.2:-30971363 | None:intergenic |
TTCGCAAGTTGTTGGTCAGA+AGG | 0.515705 | 1.2:+30973504 | MS.gene41343:CDS |
CTCCTGCAGAAGAAGAGGAT+TGG | 0.516624 | 1.2:+30961254 | MS.gene41343:CDS |
AATGGATGATTTCGATGTCA+TGG | 0.519594 | 1.2:+30960955 | None:intergenic |
AACAACGATGATGGAAAAGA+TGG | 0.521725 | 1.2:+30974379 | MS.gene41343:CDS |
TTGTTGTTCGTAAGTGCGAT+AGG | 0.521744 | 1.2:-30961041 | None:intergenic |
GCTTTCTTTACCTATGAAGC+AGG | 0.522251 | 1.2:+30975979 | MS.gene41343:CDS |
AAAACTGCGACTTTAACAAA+AGG | 0.522898 | 1.2:+30976522 | MS.gene41343:CDS |
CTTCTGCTATGTGGACCACC+AGG | 0.524036 | 1.2:+30963949 | MS.gene41343:CDS |
CAGAAGAAGAGGATTGGCTT+CGG | 0.525407 | 1.2:+30961260 | MS.gene41343:CDS |
TAGGTATCGAACAACGATGA+TGG | 0.526100 | 1.2:+30974370 | MS.gene41343:intron |
AAGTAGTGGTCATCATCATC+GGG | 0.530659 | 1.2:-30961064 | None:intergenic |
ACACAACAAATGCCTCTCCT+TGG | 0.533973 | 1.2:+30974071 | MS.gene41343:CDS |
GAAAGGAAATCATCAAAGAA+GGG | 0.537066 | 1.2:+30966703 | MS.gene41343:CDS |
TGATAGGGTTTATACGAAGC+TGG | 0.538089 | 1.2:+30961396 | MS.gene41343:CDS |
TGGTAACTTACTTGGCCACT+TGG | 0.539907 | 1.2:-30966910 | None:intergenic |
CCTGTTACTATTACTACTCC+AGG | 0.540186 | 1.2:-30962823 | None:intergenic |
AAGTCTTCAACAAAGGAAGT+AGG | 0.542169 | 1.2:-30974458 | None:intergenic |
AATATATATGTAACAAGGAG+GGG | 0.542801 | 1.2:+30971333 | MS.gene41343:CDS |
TGATGGAAAGGGTGCTGTGG+AGG | 0.543413 | 1.2:+30965930 | MS.gene41343:CDS |
TAGGTAAAGAAAGCGCGTAA+TGG | 0.543937 | 1.2:-30975970 | None:intergenic |
TGTTCTCGACATCTGGAAAG+AGG | 0.544296 | 1.2:+30973540 | MS.gene41343:CDS |
TAGGTGGTGGATGAAATTGA+TGG | 0.544828 | 1.2:+30965898 | MS.gene41343:intron |
ATCCCCACCATCCATAAGAC+CGG | 0.546602 | 1.2:+30974505 | MS.gene41343:CDS |
GAGGTTATCGCGATTTGCGT+CGG | 0.547066 | 1.2:+30961333 | MS.gene41343:CDS |
GGGTTTATACGAAGCTGGAT+AGG | 0.547407 | 1.2:+30961401 | MS.gene41343:CDS |
ACTGTATCCGAAGTCGGAGG+TGG | 0.550934 | 1.2:-30961283 | None:intergenic |
ATTGAAATCTTACCGCATTG+AGG | 0.554309 | 1.2:-30971762 | None:intergenic |
TTGTTCAACCAACAGTTAGT+CGG | 0.555383 | 1.2:+30969615 | MS.gene41343:CDS |
GTCTATGACAGGTACTCTTG+TGG | 0.556382 | 1.2:+30962604 | MS.gene41343:intron |
TACCGGTCTTATGGATGGTG+GGG | 0.557624 | 1.2:-30974507 | None:intergenic |
ATTGATGGAGCCCTTGGTGA+TGG | 0.558634 | 1.2:+30965913 | MS.gene41343:CDS |
AATGCGAAGTCACGGAATAC+CGG | 0.559927 | 1.2:+30962906 | MS.gene41343:CDS |
GTATAAACCCTATCACCATT+CGG | 0.560491 | 1.2:-30961388 | None:intergenic |
AGAAATTAAGTCTTCAACAA+AGG | 0.560850 | 1.2:-30974465 | None:intergenic |
TTACCGGTCTTATGGATGGT+GGG | 0.560914 | 1.2:-30974508 | None:intergenic |
AAATATATATGTAACAAGGA+GGG | 0.561991 | 1.2:+30971332 | MS.gene41343:CDS |
GATTGATGGTGAAGTTATGC+CGG | 0.565913 | 1.2:+30961357 | MS.gene41343:CDS |
TGGTGATGGAAAGGGTGCTG+TGG | 0.566395 | 1.2:+30965927 | MS.gene41343:CDS |
TGTACTCCCTTATATCATAC+CGG | 0.566517 | 1.2:+30973735 | MS.gene41343:CDS |
CGCTAAAGCACTGAGTGCAA+TGG | 0.568087 | 1.2:-30971369 | None:intergenic |
AAGAAGATCAGTAAAAGACT+TGG | 0.568243 | 1.2:-30962432 | None:intergenic |
TTGTGGATATCATGTGGTTG+AGG | 0.568428 | 1.2:+30964011 | MS.gene41343:CDS |
TGGCGTAATGATCTTAAGGC+AGG | 0.570004 | 1.2:-30966890 | None:intergenic |
TGACAGATCCTTCTGCTATG+TGG | 0.570271 | 1.2:+30963940 | MS.gene41343:intron |
ATCTTAAGGCAGGTGCATAT+AGG | 0.572649 | 1.2:-30966880 | None:intergenic |
TGATGTAGAACGATCATCAC+TGG | 0.573132 | 1.2:-30965720 | None:intergenic |
TTTAAGAGTACAGATGAGAC+TGG | 0.574395 | 1.2:+30962855 | MS.gene41343:CDS |
GATGAAATTGATGGAGCCCT+TGG | 0.575535 | 1.2:+30965907 | MS.gene41343:CDS |
AGGAGGGCATGACGTTATTG+AGG | 0.578081 | 1.2:+30976542 | MS.gene41343:CDS |
AGATGCTCCTGCAGAAGAAG+AGG | 0.578687 | 1.2:+30961249 | MS.gene41343:CDS |
CTTACCACCCGACTAACTGT+TGG | 0.578892 | 1.2:-30969623 | None:intergenic |
TACCGGTGCACCAGAACAGA+AGG | 0.583983 | 1.2:+30962923 | MS.gene41343:CDS |
AGATCAAGAGAATTTCGCTA+AGG | 0.584578 | 1.2:+30962146 | MS.gene41343:CDS |
TGACTGTTAGCGAGATCTGT+TGG | 0.584939 | 1.2:-30961136 | None:intergenic |
CATGGATATGGATATGGACA+TGG | 0.589625 | 1.2:+30960973 | MS.gene41343:CDS |
ATGCCGGTTACTGCGCCGAA+TGG | 0.589653 | 1.2:+30961373 | MS.gene41343:CDS |
TGTACAATAATTGCTATGGT+AGG | 0.589957 | 1.2:-30974194 | None:intergenic |
TCTTCTACTGTATCCGAAGT+CGG | 0.591603 | 1.2:-30961289 | None:intergenic |
TGGATAAAGGACAAATGGAA+AGG | 0.593258 | 1.2:+30966686 | MS.gene41343:CDS |
AGAAGATCAGTAAAAGACTT+GGG | 0.594029 | 1.2:-30962431 | None:intergenic |
GGAGCCCTTGGTGATGGAAA+GGG | 0.595218 | 1.2:+30965919 | MS.gene41343:CDS |
TATATTACCGGTCTTATGGA+TGG | 0.596794 | 1.2:-30974512 | None:intergenic |
CTTAAGATCATTACGCCAAG+TGG | 0.597064 | 1.2:+30966895 | MS.gene41343:CDS |
AATCCGAATCTGAATTCGAA+CGG | 0.597934 | 1.2:-30961168 | None:intergenic |
ATATATATGTAACAAGGAGG+GGG | 0.598305 | 1.2:+30971334 | MS.gene41343:CDS |
TTAGCGAGATCTGTTGGCGG+TGG | 0.598390 | 1.2:-30961130 | None:intergenic |
ATTACCGGTCTTATGGATGG+TGG | 0.598649 | 1.2:-30974509 | None:intergenic |
AGAAGAAGTGAGATTCTCCA+AGG | 0.600698 | 1.2:+30961306 | MS.gene41343:CDS |
AGTGGCCAAAGTCATATCAC+AGG | 0.601263 | 1.2:+30974252 | MS.gene41343:CDS |
AGTTCATCTGAACCACATCA+AGG | 0.601964 | 1.2:-30965760 | None:intergenic |
CTGAAAAGAAGCCTGATGCA+GGG | 0.603143 | 1.2:+30966653 | MS.gene41343:CDS |
TGGAGCCCTTGGTGATGGAA+AGG | 0.603757 | 1.2:+30965918 | MS.gene41343:CDS |
ACTGCGACTTTAACAAAAGG+AGG | 0.605355 | 1.2:+30976525 | MS.gene41343:CDS |
TTCAAAAGCCAAACATTGAG+TGG | 0.605804 | 1.2:+30974234 | MS.gene41343:CDS |
CAAGACAAAACTGCTAGACA+TGG | 0.608832 | 1.2:+30976731 | MS.gene41343:CDS |
AAATATCGCCACATATTGCA+AGG | 0.608936 | 1.2:+30974426 | MS.gene41343:CDS |
CGGGAGGATTGTAAAAGTAG+TGG | 0.611377 | 1.2:-30961078 | None:intergenic |
CACTTGCACATGTAGCTGCT+AGG | 0.615704 | 1.2:+30963986 | MS.gene41343:CDS |
GTATGATATAAGGGAGTACA+AGG | 0.619033 | 1.2:-30973732 | None:intergenic |
ATGATGTACAATAATTGCTA+TGG | 0.623036 | 1.2:-30974198 | None:intergenic |
GGTGGCATTACAACTACTGT+CGG | 0.624310 | 1.2:+30975691 | MS.gene41343:intron |
GGGGATAAAATGTCCAACAA+TGG | 0.624497 | 1.2:-30974488 | None:intergenic |
CTGGTGGTCCACATAGCAGA+AGG | 0.624816 | 1.2:-30963948 | None:intergenic |
AAAATATATATGTAACAAGG+AGG | 0.625229 | 1.2:+30971331 | MS.gene41343:CDS |
CATGTAGCTGCTAGGCATTG+TGG | 0.628699 | 1.2:+30963994 | MS.gene41343:CDS |
CTGTTAGCGAGATCTGTTGG+CGG | 0.629876 | 1.2:-30961133 | None:intergenic |
ATACACGCAATGCGAAGTCA+CGG | 0.634854 | 1.2:+30962898 | MS.gene41343:CDS |
GTTACGAAGCTGAATTGTAG+AGG | 0.637412 | 1.2:+30961442 | MS.gene41343:CDS |
AGCACCCTTTCCATCACCAA+GGG | 0.639210 | 1.2:-30965923 | None:intergenic |
GATAAGTGCCTTGCAATATG+TGG | 0.639941 | 1.2:-30974434 | None:intergenic |
GATAGTGACCTGATTCTGGA+TGG | 0.642489 | 1.2:+30973846 | MS.gene41343:CDS |
AAAGGAAATCATCAAAGAAG+GGG | 0.646484 | 1.2:+30966704 | MS.gene41343:CDS |
GGTTCGTGTTCGTCTTCGGG+AGG | 0.648144 | 1.2:-30961094 | None:intergenic |
TGCTCAATTAGTTAGCACAA+TGG | 0.651026 | 1.2:+30975733 | MS.gene41343:CDS |
CGAGTAATTCGAGTTCTTCG+GGG | 0.654717 | 1.2:-30961012 | None:intergenic |
CTGCGACTTTAACAAAAGGA+GGG | 0.663227 | 1.2:+30976526 | MS.gene41343:CDS |
AGTATCATCCTACCAAGGAG+AGG | 0.672223 | 1.2:-30974083 | None:intergenic |
AGATGTTCCTGAAACACTAA+CGG | 0.675473 | 1.2:+30962376 | MS.gene41343:CDS |
ACTAAAATATATATGTAACA+AGG | 0.680306 | 1.2:+30971328 | MS.gene41343:CDS |
CAGCACCCTTTCCATCACCA+AGG | 0.682192 | 1.2:-30965924 | None:intergenic |
TCTACTGTATCCGAAGTCGG+AGG | 0.685593 | 1.2:-30961286 | None:intergenic |
TCAACCAACAGTTAGTCGGG+TGG | 0.692860 | 1.2:+30969619 | MS.gene41343:CDS |
AAAACTCACAGGTCTTGACA+GGG | 0.694198 | 1.2:-30966740 | None:intergenic |
TAGGCATTGTGGATATCATG+TGG | 0.703509 | 1.2:+30964005 | MS.gene41343:CDS |
CGACGAACAGACAAATCGCG+AGG | 0.715758 | 1.2:+30962457 | MS.gene41343:CDS |
GAAGAAAGAAACCCTCAATG+CGG | 0.741008 | 1.2:+30971750 | MS.gene41343:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 30960956 | 30978322 | 30960956 | ID=MS.gene41343 |
chr1.2 | mRNA | 30960956 | 30978322 | 30960956 | ID=MS.gene41343.t1;Parent=MS.gene41343 |
chr1.2 | exon | 30960956 | 30961475 | 30960956 | ID=MS.gene41343.t1.exon1;Parent=MS.gene41343.t1 |
chr1.2 | CDS | 30960956 | 30961475 | 30960956 | ID=cds.MS.gene41343.t1;Parent=MS.gene41343.t1 |
chr1.2 | exon | 30962106 | 30962167 | 30962106 | ID=MS.gene41343.t1.exon2;Parent=MS.gene41343.t1 |
chr1.2 | CDS | 30962106 | 30962167 | 30962106 | ID=cds.MS.gene41343.t1;Parent=MS.gene41343.t1 |
chr1.2 | exon | 30962341 | 30962478 | 30962341 | ID=MS.gene41343.t1.exon3;Parent=MS.gene41343.t1 |
chr1.2 | CDS | 30962341 | 30962478 | 30962341 | ID=cds.MS.gene41343.t1;Parent=MS.gene41343.t1 |
chr1.2 | exon | 30962615 | 30962944 | 30962615 | ID=MS.gene41343.t1.exon4;Parent=MS.gene41343.t1 |
chr1.2 | CDS | 30962615 | 30962944 | 30962615 | ID=cds.MS.gene41343.t1;Parent=MS.gene41343.t1 |
chr1.2 | exon | 30963946 | 30964032 | 30963946 | ID=MS.gene41343.t1.exon5;Parent=MS.gene41343.t1 |
chr1.2 | CDS | 30963946 | 30964032 | 30963946 | ID=cds.MS.gene41343.t1;Parent=MS.gene41343.t1 |
chr1.2 | exon | 30965713 | 30965814 | 30965713 | ID=MS.gene41343.t1.exon6;Parent=MS.gene41343.t1 |
chr1.2 | CDS | 30965713 | 30965814 | 30965713 | ID=cds.MS.gene41343.t1;Parent=MS.gene41343.t1 |
chr1.2 | exon | 30965901 | 30965966 | 30965901 | ID=MS.gene41343.t1.exon7;Parent=MS.gene41343.t1 |
chr1.2 | CDS | 30965901 | 30965966 | 30965901 | ID=cds.MS.gene41343.t1;Parent=MS.gene41343.t1 |
chr1.2 | exon | 30966646 | 30966753 | 30966646 | ID=MS.gene41343.t1.exon8;Parent=MS.gene41343.t1 |
chr1.2 | CDS | 30966646 | 30966753 | 30966646 | ID=cds.MS.gene41343.t1;Parent=MS.gene41343.t1 |
chr1.2 | exon | 30966860 | 30966921 | 30966860 | ID=MS.gene41343.t1.exon9;Parent=MS.gene41343.t1 |
chr1.2 | CDS | 30966860 | 30966921 | 30966860 | ID=cds.MS.gene41343.t1;Parent=MS.gene41343.t1 |
chr1.2 | exon | 30969604 | 30969648 | 30969604 | ID=MS.gene41343.t1.exon10;Parent=MS.gene41343.t1 |
chr1.2 | CDS | 30969604 | 30969648 | 30969604 | ID=cds.MS.gene41343.t1;Parent=MS.gene41343.t1 |
chr1.2 | exon | 30971328 | 30971401 | 30971328 | ID=MS.gene41343.t1.exon11;Parent=MS.gene41343.t1 |
chr1.2 | CDS | 30971328 | 30971401 | 30971328 | ID=cds.MS.gene41343.t1;Parent=MS.gene41343.t1 |
chr1.2 | exon | 30971704 | 30971771 | 30971704 | ID=MS.gene41343.t1.exon12;Parent=MS.gene41343.t1 |
chr1.2 | CDS | 30971704 | 30971771 | 30971704 | ID=cds.MS.gene41343.t1;Parent=MS.gene41343.t1 |
chr1.2 | exon | 30973493 | 30973561 | 30973493 | ID=MS.gene41343.t1.exon13;Parent=MS.gene41343.t1 |
chr1.2 | CDS | 30973493 | 30973561 | 30973493 | ID=cds.MS.gene41343.t1;Parent=MS.gene41343.t1 |
chr1.2 | exon | 30973662 | 30973756 | 30973662 | ID=MS.gene41343.t1.exon14;Parent=MS.gene41343.t1 |
chr1.2 | CDS | 30973662 | 30973756 | 30973662 | ID=cds.MS.gene41343.t1;Parent=MS.gene41343.t1 |
chr1.2 | exon | 30973842 | 30973923 | 30973842 | ID=MS.gene41343.t1.exon15;Parent=MS.gene41343.t1 |
chr1.2 | CDS | 30973842 | 30973923 | 30973842 | ID=cds.MS.gene41343.t1;Parent=MS.gene41343.t1 |
chr1.2 | exon | 30974014 | 30974092 | 30974014 | ID=MS.gene41343.t1.exon16;Parent=MS.gene41343.t1 |
chr1.2 | CDS | 30974014 | 30974092 | 30974014 | ID=cds.MS.gene41343.t1;Parent=MS.gene41343.t1 |
chr1.2 | exon | 30974186 | 30974273 | 30974186 | ID=MS.gene41343.t1.exon17;Parent=MS.gene41343.t1 |
chr1.2 | CDS | 30974186 | 30974273 | 30974186 | ID=cds.MS.gene41343.t1;Parent=MS.gene41343.t1 |
chr1.2 | exon | 30974373 | 30974526 | 30974373 | ID=MS.gene41343.t1.exon18;Parent=MS.gene41343.t1 |
chr1.2 | CDS | 30974373 | 30974526 | 30974373 | ID=cds.MS.gene41343.t1;Parent=MS.gene41343.t1 |
chr1.2 | exon | 30975692 | 30975880 | 30975692 | ID=MS.gene41343.t1.exon19;Parent=MS.gene41343.t1 |
chr1.2 | CDS | 30975692 | 30975880 | 30975692 | ID=cds.MS.gene41343.t1;Parent=MS.gene41343.t1 |
chr1.2 | exon | 30975956 | 30976015 | 30975956 | ID=MS.gene41343.t1.exon20;Parent=MS.gene41343.t1 |
chr1.2 | CDS | 30975956 | 30976015 | 30975956 | ID=cds.MS.gene41343.t1;Parent=MS.gene41343.t1 |
chr1.2 | exon | 30976489 | 30976799 | 30976489 | ID=MS.gene41343.t1.exon21;Parent=MS.gene41343.t1 |
chr1.2 | CDS | 30976489 | 30976799 | 30976489 | ID=cds.MS.gene41343.t1;Parent=MS.gene41343.t1 |
chr1.2 | exon | 30977582 | 30977687 | 30977582 | ID=MS.gene41343.t1.exon22;Parent=MS.gene41343.t1 |
chr1.2 | CDS | 30977582 | 30977687 | 30977582 | ID=cds.MS.gene41343.t1;Parent=MS.gene41343.t1 |
chr1.2 | exon | 30978269 | 30978322 | 30978269 | ID=MS.gene41343.t1.exon23;Parent=MS.gene41343.t1 |
chr1.2 | CDS | 30978269 | 30978322 | 30978269 | ID=cds.MS.gene41343.t1;Parent=MS.gene41343.t1 |
Gene Sequence |
Protein sequence |