AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene013678

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene013678.t1 MTR_3g089940 99.474 380 2 0 1 380 1 380 0.0 783
MS.gene013678.t1 MTR_3g089940 98.421 380 6 0 1 380 1 380 0.0 776
MS.gene013678.t1 MTR_3g089977 97.632 380 9 0 1 380 1 380 0.0 775
MS.gene013678.t1 MTR_3g089970 97.625 379 9 0 2 380 3 381 0.0 767
MS.gene013678.t1 MTR_3g089940 99.708 342 1 0 1 342 1 342 0.0 706
MS.gene013678.t1 MTR_3g089940 98.538 342 5 0 1 342 1 342 0.0 699
MS.gene013678.t1 MTR_7g099040 58.886 377 155 0 2 378 3 379 4.22e-170 480
MS.gene013678.t1 MTR_1g069430 56.915 376 162 0 3 378 2 377 4.64e-165 467
MS.gene013678.t1 MTR_6g068930 51.715 379 179 2 2 380 3 377 9.11e-144 413
MS.gene013678.t1 MTR_7g068320 48.825 383 190 5 1 378 12 393 1.83e-127 372
MS.gene013678.t1 MTR_7g068330 48.556 381 191 4 2 378 6 385 2.75e-127 371
MS.gene013678.t1 MTR_5g087710 45.812 382 203 4 2 380 11 391 2.17e-121 357
MS.gene013678.t1 MTR_3g099460 50.132 379 183 4 6 379 13 390 5.42e-121 355
MS.gene013678.t1 MTR_3g099460 49.604 379 178 5 6 379 13 383 7.39e-117 345
MS.gene013678.t1 MTR_3g079180 43.832 381 210 4 2 379 6 385 1.95e-110 328
MS.gene013678.t1 MTR_3g099460 49.379 322 159 3 61 379 7 327 1.18e-96 291
MS.gene013678.t1 MTR_0001s0660 39.578 379 219 5 3 378 2 373 1.23e-89 278
MS.gene013678.t1 MTR_5g045710 39.211 380 223 6 1 378 1 374 4.23e-89 273
MS.gene013678.t1 MTR_3g099460 52.650 283 128 4 6 283 13 294 5.57e-85 261
MS.gene013678.t1 MTR_3g099460 51.943 283 123 5 6 283 13 287 9.71e-81 250
MS.gene013678.t1 MTR_3g079170 42.182 275 137 4 101 370 25 282 2.09e-69 220
MS.gene013678.t1 MTR_5g045710 36.395 294 183 3 86 378 1 291 4.22e-61 199
MS.gene013678.t1 MTR_8g095220 31.053 380 239 15 12 378 55 424 4.66e-44 158
MS.gene013678.t1 MTR_8g095220 30.859 256 163 8 12 258 55 305 1.55e-31 122
MS.gene013678.t1 MTR_6g465010 25.405 370 224 13 16 369 3 336 7.36e-22 95.9
MS.gene013678.t1 MTR_6g466320 25.405 370 224 13 16 369 19 352 9.26e-22 95.9
MS.gene013678.t1 MTR_6g465010 25.405 370 224 13 16 369 19 352 9.26e-22 95.9
MS.gene013678.t1 MTR_5g031190 23.913 368 237 14 12 370 11 344 1.56e-13 71.6
MS.gene013678.t1 MTR_4g115300 25.369 339 215 9 37 370 39 344 1.09e-12 68.9
MS.gene013678.t1 MTR_5g031390 24.189 339 219 9 37 370 39 344 1.88e-12 68.2
MS.gene013678.t1 MTR_5g031230 23.894 339 220 10 37 370 39 344 9.36e-12 66.2
MS.gene013678.t1 MTR_1g025950 22.599 354 207 10 37 370 38 344 2.88e-11 64.7
MS.gene013678.t1 MTR_5g031210 24.702 336 221 10 37 370 39 344 4.15e-11 64.3
MS.gene013678.t1 MTR_5g031360 22.321 336 229 7 37 370 41 346 5.16e-11 63.9
MS.gene013678.t1 MTR_5g031180 24.044 366 239 13 12 370 11 344 7.69e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene013678.t1 AT1G77120 84.574 376 58 0 3 378 2 377 0.0 674
MS.gene013678.t1 AT5G43940 58.556 374 155 0 3 376 2 375 7.43e-168 474
MS.gene013678.t1 AT5G43940 56.477 386 156 1 3 376 2 387 7.03e-164 464
MS.gene013678.t1 AT5G24760 52.151 372 174 2 7 378 12 379 1.07e-146 421
MS.gene013678.t1 AT1G64710 49.735 378 187 2 4 378 3 380 1.12e-141 408
MS.gene013678.t1 AT1G32780 50.000 390 185 2 1 380 1 390 1.39e-141 408
MS.gene013678.t1 AT5G24760 50.847 354 170 2 25 378 1 350 1.40e-135 391
MS.gene013678.t1 AT5G24760 50.847 354 170 2 25 378 1 350 1.40e-135 391
MS.gene013678.t1 AT1G64710 48.179 357 182 2 25 378 1 357 2.45e-129 375
MS.gene013678.t1 AT5G42250 47.185 373 194 3 9 378 17 389 3.46e-120 353
MS.gene013678.t1 AT1G22440 49.096 387 184 6 2 380 5 386 3.01e-119 351
MS.gene013678.t1 AT1G22430 47.258 383 199 3 1 380 6 388 4.16e-117 345
MS.gene013678.t1 AT1G22430 47.258 383 199 3 1 380 6 388 4.16e-117 345
MS.gene013678.t1 AT4G22110 47.244 381 192 4 6 380 12 389 2.75e-114 338
MS.gene013678.t1 AT4G22110 47.244 381 192 4 6 380 12 389 2.75e-114 338
MS.gene013678.t1 AT1G64710 47.059 306 160 1 75 378 6 311 6.65e-107 317
MS.gene013678.t1 AT5G24760 46.992 266 140 1 113 378 1 265 2.85e-92 278
MS.gene013678.t1 AT1G22430 51.049 286 137 3 1 283 6 291 8.56e-91 276
MS.gene013678.t1 AT1G22430 52.610 249 116 2 1 247 6 254 2.65e-82 253
MS.gene013678.t1 AT1G22430 52.610 249 116 2 1 247 6 254 2.65e-82 253
MS.gene013678.t1 AT4G22110 52.439 246 109 3 6 246 12 254 1.82e-77 240
MS.gene013678.t1 AT5G63620 30.027 373 239 13 12 372 57 419 1.05e-39 146
MS.gene013678.t1 AT5G63620 29.380 371 244 11 12 372 57 419 3.06e-39 145
MS.gene013678.t1 AT5G63620 29.719 249 162 7 12 251 57 301 6.65e-28 112
MS.gene013678.t1 AT5G51970 23.711 388 242 14 1 371 6 356 8.22e-19 87.4
MS.gene013678.t1 AT5G51970 23.711 388 242 14 1 371 6 356 8.22e-19 87.4
MS.gene013678.t1 AT1G72680 24.933 373 245 9 1 370 1 341 1.05e-14 75.1
MS.gene013678.t1 AT4G37990 25.000 312 209 9 37 346 35 323 2.39e-12 68.2

Find 109 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTCATCTGTTGCTATCTT+TGG 0.236969 3.3:+75406360 MS.gene013678:CDS
ACGGGTTTGTCATGATCTTT+TGG 0.242014 3.3:-75406691 None:intergenic
GTCATACTGATGTTTACTTC+TGG 0.242164 3.3:+75404506 MS.gene013678:CDS
GCTTTGTTAATCTCTGAAAA+TGG 0.242441 3.3:-75407333 None:intergenic
GTTTCTAGCCGATTTGAATT+AGG 0.268437 3.3:+75406547 MS.gene013678:CDS
TGGTCTCAGCTAAGAAGTTT+GGG 0.291376 3.3:+75406650 MS.gene013678:intron
CTTTCATTCAACAAATTCAT+AGG 0.292860 3.3:-75407084 None:intergenic
GGGTTTGTAGTTACCATAAA+AGG 0.296012 3.3:-75407121 None:intergenic
TTGGTCTCAGCTAAGAAGTT+TGG 0.297490 3.3:+75406649 MS.gene013678:intron
GCAACATGTGTGATCTTCTT+AGG 0.311495 3.3:+75405707 MS.gene013678:CDS
TCAGTCAAGATTCACTATTA+AGG 0.325630 3.3:+75405765 MS.gene013678:CDS
TGGGGTGTTGCTGTACTTGT+TGG 0.336473 3.3:+75407027 MS.gene013678:CDS
ATGTACTTCTCTACAACATT+AGG 0.344846 3.3:-75407156 None:intergenic
TTGAATGCATCATCTTTGTT+TGG 0.346611 3.3:-75407054 None:intergenic
GCTGAAGGAGCAAGGATATC+TGG 0.347450 3.3:+75406496 MS.gene013678:CDS
GTTGAATGAAAGGACTCTTA+AGG 0.347627 3.3:+75407095 MS.gene013678:CDS
ATCTTTGGACTTGGAGCTGT+TGG 0.351212 3.3:+75406375 MS.gene013678:CDS
ACTTTGTCAAGTGGTGCATC+AGG 0.352356 3.3:-75405871 None:intergenic
TTGAATGAAAGGACTCTTAA+GGG 0.375052 3.3:+75407096 MS.gene013678:CDS
GCAACAGATGAACCGGGTTT+CGG 0.376365 3.3:-75406351 None:intergenic
TATCTGCAGCTGCGGTTGCA+TGG 0.381586 3.3:+75404392 MS.gene013678:intron
GCTGCGGTTGCATGGGAGGC+GGG 0.386440 3.3:+75404400 MS.gene013678:intron
TCATACTGATGTTTACTTCT+GGG 0.391708 3.3:+75404507 MS.gene013678:CDS
GGCGGGGAAGCCGCTGGTGA+TGG 0.393519 3.3:+75404417 MS.gene013678:CDS
TGTTGAACTAACCTGTTGTA+CGG 0.403420 3.3:-75406710 None:intergenic
AGCTGCGGTTGCATGGGAGG+CGG 0.413137 3.3:+75404399 MS.gene013678:intron
AAAGATAGCAACAGATGAAC+CGG 0.416086 3.3:-75406358 None:intergenic
TCTGTTGCTATCTTTGGACT+TGG 0.419387 3.3:+75406366 MS.gene013678:CDS
CAGTCAAGATTCACTATTAA+GGG 0.421787 3.3:+75405766 MS.gene013678:CDS
TCATGACAAACCCGTACAAC+AGG 0.433809 3.3:+75406699 MS.gene013678:CDS
GATCGTGCTGTTGAATGTAC+TGG 0.436537 3.3:+75406869 MS.gene013678:CDS
ATCTGCAGCTGCGGTTGCAT+GGG 0.438978 3.3:+75404393 MS.gene013678:intron
TTGTAGAGAAGTACATGAAA+GGG 0.451043 3.3:+75407163 MS.gene013678:CDS
TCTGGTGCATCAAGAATCAT+TGG 0.451804 3.3:+75406514 MS.gene013678:CDS
GTAATTGCTGAAATGACAAA+TGG 0.467912 3.3:+75406839 MS.gene013678:CDS
TTTCGGCTTAGCAACATTGA+TGG 0.472708 3.3:-75406334 None:intergenic
CCACACTCCCCTGTGAATAC+AGG 0.474104 3.3:-75405655 None:intergenic
CCTGTATTCACAGGGGAGTG+TGG 0.474817 3.3:+75405655 MS.gene013678:CDS
CATGCCCTGCCTGTATTCAC+AGG 0.480140 3.3:+75405646 MS.gene013678:CDS
GCCGCTGGTGATGGAGGAAG+TGG 0.480972 3.3:+75404426 MS.gene013678:CDS
ACAGGCAGGGCATGATCCCC+TGG 0.483648 3.3:-75405637 None:intergenic
CTGTATTCACAGGGGAGTGT+GGG 0.483700 3.3:+75405656 MS.gene013678:CDS
TGCAGCTGCGGTTGCATGGG+AGG 0.488595 3.3:+75404396 MS.gene013678:intron
ATGGGAGGCGGGGAAGCCGC+TGG 0.490732 3.3:+75404411 MS.gene013678:CDS
CTATGAATTTGTTGAATGAA+AGG 0.494743 3.3:+75407085 MS.gene013678:CDS
TTCTTAGGATCAACACGGAC+AGG 0.502318 3.3:+75405722 MS.gene013678:CDS
CATTCGGATGATGCATCTGA+TGG 0.504913 3.3:-75407382 None:intergenic
ACATTCGAAAGCTGAGATCA+TGG 0.510392 3.3:-75406903 None:intergenic
TTTCATTCAACAAATTCATA+GGG 0.514951 3.3:-75407083 None:intergenic
TAAGTCATGTCGAGTACAGC+TGG 0.515258 3.3:+75403330 None:intergenic
GTTGAACTAACCTGTTGTAC+GGG 0.516621 3.3:-75406709 None:intergenic
AACATTAGGAAGATCAGTGC+GGG 0.517924 3.3:-75407142 None:intergenic
TACAAATTTCAGGCTGCTGA+AGG 0.521714 3.3:+75406481 MS.gene013678:intron
GCATTGTACCTAATTCAAAT+CGG 0.523873 3.3:-75406555 None:intergenic
CTGCGGTTGCATGGGAGGCG+GGG 0.533283 3.3:+75404401 MS.gene013678:CDS
GGTGATGGAGGAAGTGGAGG+TGG 0.533501 3.3:+75404432 MS.gene013678:CDS
GGGGAAGCCGCTGGTGATGG+AGG 0.533706 3.3:+75404420 MS.gene013678:CDS
GTTGTAGAGAAGTACATGAA+AGG 0.537144 3.3:+75407162 MS.gene013678:CDS
GAATATACTGTTGTTCATGC+TGG 0.538058 3.3:+75405829 MS.gene013678:CDS
CTCAGCTGTGGAATATGCAC+AGG 0.542001 3.3:+75405901 MS.gene013678:CDS
TGTTTACTTCTGGGAAGCTA+AGG 0.543162 3.3:+75404516 MS.gene013678:CDS
AGACGGACTTCACCGGCTTG+TGG 0.546092 3.3:-75404460 None:intergenic
GTAAACATCAGTATGACAAA+GGG 0.554993 3.3:-75404500 None:intergenic
GTGCCGACGAAATGATGAAT+GGG 0.557629 3.3:-75405793 None:intergenic
AAAGTTTGTATTCTCAGCTG+TGG 0.560671 3.3:+75405889 MS.gene013678:CDS
TATCTTGAGACGGACTTCAC+CGG 0.564597 3.3:-75404467 None:intergenic
AGTAAACATCAGTATGACAA+AGG 0.570922 3.3:-75404501 None:intergenic
TGTGCCGACGAAATGATGAA+TGG 0.574064 3.3:-75405794 None:intergenic
CGAAAGCTGAGATCATGGCC+TGG 0.579058 3.3:-75406898 None:intergenic
ACTCCCCTGTGAATACAGGC+AGG 0.579461 3.3:-75405651 None:intergenic
CATGATGTTGATCAGGATTG+TGG 0.581178 3.3:+75405582 MS.gene013678:intron
TTCAGGCTGCTGAAGGAGCA+AGG 0.586031 3.3:+75406488 MS.gene013678:intron
CATCAGATGCATCATCCGAA+TGG 0.586918 3.3:+75407383 MS.gene013678:CDS
CAGCCCATTCATCATTTCGT+CGG 0.590024 3.3:+75405790 MS.gene013678:CDS
TGTATTCACAGGGGAGTGTG+GGG 0.591767 3.3:+75405657 MS.gene013678:CDS
CTTTGTCAAGTGGTGCATCA+GGG 0.593942 3.3:-75405870 None:intergenic
GATTGTGGAGAGCGTAGGCG+AGG 0.594735 3.3:+75405597 MS.gene013678:CDS
TCTTAGGATCAACACGGACA+GGG 0.595918 3.3:+75405723 MS.gene013678:CDS
AGAATACAAACTTTGTCAAG+TGG 0.596408 3.3:-75405880 None:intergenic
TGAATGTACTGGGAGCATCC+AGG 0.596660 3.3:+75406880 MS.gene013678:CDS
GAGGTGGCGCCACCACAAGC+CGG 0.599089 3.3:+75404448 MS.gene013678:CDS
AATGTTGCTAAGCCGAAACC+CGG 0.606869 3.3:+75406339 MS.gene013678:CDS
ATCGTGCTGTTGAATGTACT+GGG 0.609310 3.3:+75406870 MS.gene013678:CDS
GTGTGACACATCTAAAACCA+GGG 0.609545 3.3:+75405620 MS.gene013678:CDS
CGGACTTCACCGGCTTGTGG+TGG 0.618100 3.3:-75404457 None:intergenic
CTGTCCACATTGTAAGTCAG+AGG 0.618115 3.3:+75405681 MS.gene013678:CDS
CAGATGCATCATCCGAATGG+AGG 0.625117 3.3:+75407386 MS.gene013678:CDS
TGTAGAGAAGTACATGAAAG+GGG 0.626357 3.3:+75407164 MS.gene013678:CDS
AACATCAGTATGACAAAGGG+AGG 0.627239 3.3:-75404497 None:intergenic
GCTGGTGATGGAGGAAGTGG+AGG 0.628022 3.3:+75404429 MS.gene013678:CDS
GGTGTGACACATCTAAAACC+AGG 0.629311 3.3:+75405619 MS.gene013678:CDS
GGTCAAGTCATCAAATGCAA+AGG 0.634446 3.3:+75403351 MS.gene013678:CDS
CTCTCCTCTGACTTACAATG+TGG 0.634714 3.3:-75405685 None:intergenic
ATGCCCTGCCTGTATTCACA+GGG 0.640094 3.3:+75405647 MS.gene013678:CDS
GGTCTCAGCTAAGAAGTTTG+GGG 0.642019 3.3:+75406651 MS.gene013678:intron
AGGTGAAGAGTATCTTGAGA+CGG 0.642729 3.3:-75404477 None:intergenic
ATCAGGATTGTGGAGAGCGT+AGG 0.642832 3.3:+75405592 MS.gene013678:intron
CTTAGGATCAACACGGACAG+GGG 0.662424 3.3:+75405724 MS.gene013678:CDS
ATTGTGGAGAGCGTAGGCGA+GGG 0.662603 3.3:+75405598 MS.gene013678:CDS
AAGATAGCAACAGATGAACC+GGG 0.667433 3.3:-75406357 None:intergenic
ATTGCTGAAATGACAAATGG+AGG 0.669847 3.3:+75406842 MS.gene013678:CDS
CTCCCCTGTGAATACAGGCA+GGG 0.674123 3.3:-75405650 None:intergenic
TCCACTTCCTCCATCACCAG+CGG 0.690568 3.3:-75404427 None:intergenic
CAACATTAGGAAGATCAGTG+CGG 0.707517 3.3:-75407143 None:intergenic
TGAAATGACAAATGGAGGTG+TGG 0.709912 3.3:+75406847 MS.gene013678:CDS
ACATTAGGAAGATCAGTGCG+GGG 0.718262 3.3:-75407141 None:intergenic
TGTGACACATCTAAAACCAG+GGG 0.732525 3.3:+75405621 MS.gene013678:CDS
TGCCCTGCCTGTATTCACAG+GGG 0.737931 3.3:+75405648 MS.gene013678:CDS
TGATCTTCTTAGGATCAACA+CGG 0.743683 3.3:+75405717 MS.gene013678:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAACAATCAAAATTTATA+GGG + chr3.3:75403705-75403724 MS.gene013678:intron 10.0%
!! ATGATATTTATATAAAGTTT+GGG + chr3.3:75404848-75404867 MS.gene013678:intron 10.0%
!! TAAAAACAATCAAAATTTAT+AGG + chr3.3:75403704-75403723 MS.gene013678:intron 10.0%
!! TATGATATTTATATAAAGTT+TGG + chr3.3:75404847-75404866 MS.gene013678:intron 10.0%
!!! ATTTTTCTTAATTTACTATA+TGG + chr3.3:75405482-75405501 MS.gene013678:intron 10.0%
!!! CATTTTATAACTTTAATTTT+TGG - chr3.3:75404063-75404082 None:intergenic 10.0%
!!! TAAACATAGTAATTAATTTT+TGG - chr3.3:75404094-75404113 None:intergenic 10.0%
!!! TAAATTTTGATTGTTTTTAT+TGG - chr3.3:75403703-75403722 None:intergenic 10.0%
!! AAAATTAAGTCATATAACTT+AGG - chr3.3:75406619-75406638 None:intergenic 15.0%
!! AATATATGTAATTATTGCAT+TGG + chr3.3:75403789-75403808 MS.gene013678:intron 15.0%
!! ATGTATAGTATTTATAATCA+GGG - chr3.3:75404912-75404931 None:intergenic 15.0%
!! TCGTAAAAAATATAAAAAGA+GGG + chr3.3:75404733-75404752 MS.gene013678:intron 15.0%
!! TGATATTTATATAAAGTTTG+GGG + chr3.3:75404849-75404868 MS.gene013678:intron 15.0%
!! TTCGTAAAAAATATAAAAAG+AGG + chr3.3:75404732-75404751 MS.gene013678:intron 15.0%
!!! AATAAGTTTAAAACAACTTA+TGG - chr3.3:75406051-75406070 None:intergenic 15.0%
!!! ACATTTTACAACTTAATTTT+TGG - chr3.3:75404033-75404052 None:intergenic 15.0%
!!! ATGAATTTTATTCATAATGT+TGG + chr3.3:75405559-75405578 MS.gene013678:intron 15.0%
!!! ATTTAATTCTTGTTTTTTGA+GGG + chr3.3:75405261-75405280 MS.gene013678:intron 15.0%
!!! CTTAATTTTTGAAATATTCT+TGG + chr3.3:75406630-75406649 MS.gene013678:intron 15.0%
!!! TATTTAATTCTTGTTTTTTG+AGG + chr3.3:75405260-75405279 MS.gene013678:intron 15.0%
!!! TGAGTTTAATTTTAGATTAA+AGG + chr3.3:75405040-75405059 MS.gene013678:intron 15.0%
!! ATAATCGTCTTTAAATCAAA+TGG - chr3.3:75403481-75403500 None:intergenic 20.0%
!! ATATTTATATAAAGTTTGGG+GGG + chr3.3:75404851-75404870 MS.gene013678:intron 20.0%
!! ATTTGATTGTATATGAAAAG+GGG + chr3.3:75404982-75405001 MS.gene013678:intron 20.0%
!! CATGTATAGTATTTATAATC+AGG - chr3.3:75404913-75404932 None:intergenic 20.0%
!! GATATTTATATAAAGTTTGG+GGG + chr3.3:75404850-75404869 MS.gene013678:intron 20.0%
!! GATTCAATAATACAAATTTC+AGG + chr3.3:75406471-75406490 MS.gene013678:intron 20.0%
!! GATTTGATTGTATATGAAAA+GGG + chr3.3:75404981-75405000 MS.gene013678:intron 20.0%
!! TAATATAACAACATATGTAC+CGG - chr3.3:75404820-75404839 None:intergenic 20.0%
!! TATATTAATATCTCAATGCA+AGG - chr3.3:75406250-75406269 None:intergenic 20.0%
!! TGAGATATTAATATATACCT+AGG + chr3.3:75406255-75406274 MS.gene013678:intron 20.0%
!! TGATTTGATTGTATATGAAA+AGG + chr3.3:75404980-75404999 MS.gene013678:intron 20.0%
!! TGTATAGTATTTATAATCAG+GGG - chr3.3:75404911-75404930 None:intergenic 20.0%
!! TTTCATTCAACAAATTCATA+GGG - chr3.3:75407086-75407105 None:intergenic 20.0%
!!! AAATTGTGTTTTGCTTTTTA+TGG + chr3.3:75404290-75404309 MS.gene013678:intron 20.0%
!!! CATAAGTTTAAAACAACTTA+TGG - chr3.3:75406022-75406041 None:intergenic 20.0%
!!! CATATTTTATACCCAAAAAA+AGG - chr3.3:75404707-75404726 None:intergenic 20.0%
!!! CTTATTTTTATAATCTCTCT+AGG + chr3.3:75406065-75406084 MS.gene013678:intron 20.0%
!!! TTTAATTCTTGTTTTTTGAG+GGG + chr3.3:75405262-75405281 MS.gene013678:intron 20.0%
!!! TTTTTCACTACTATAAATGA+AGG + chr3.3:75404128-75404147 MS.gene013678:intron 20.0%
! AAATATGCAATGTTGTAAAC+TGG + chr3.3:75404621-75404640 MS.gene013678:intron 25.0%
! ACAAGACCCAAAATTTATAA+AGG + chr3.3:75403890-75403909 MS.gene013678:intron 25.0%
! ACTATGTTTAGAAAATCACT+CGG + chr3.3:75404104-75404123 MS.gene013678:intron 25.0%
! AGAAATTATAAAGCTTACTG+AGG + chr3.3:75406975-75406994 MS.gene013678:intron 25.0%
! AGGATATATTATACACTACT+TGG - chr3.3:75406230-75406249 None:intergenic 25.0%
! ATGCAAAAATGACACATATT+TGG + chr3.3:75403649-75403668 MS.gene013678:intron 25.0%
! CAATAAATCAATCATATCTG+TGG - chr3.3:75405391-75405410 None:intergenic 25.0%
! CCAAAATTTATAAAGGAAGA+GGG + chr3.3:75403897-75403916 MS.gene013678:intron 25.0%
! CGTAAGTACTTAAATGATAA+GGG + chr3.3:75406168-75406187 MS.gene013678:intron 25.0%
! CTAAGGTATATTATAAACAG+TGG + chr3.3:75404533-75404552 MS.gene013678:intron 25.0%
! CTCAATCTTAAATCATTTGA+TGG - chr3.3:75406591-75406610 None:intergenic 25.0%
! CTTTCATTCAACAAATTCAT+AGG - chr3.3:75407087-75407106 None:intergenic 25.0%
! TAGATTAAAGGAAATTAAGC+TGG + chr3.3:75405052-75405071 MS.gene013678:intron 25.0%
! TATAAAAGTAACATACAGCA+AGG - chr3.3:75406401-75406420 None:intergenic 25.0%
! TATGAATTGAATCCTTTACA+AGG - chr3.3:75405290-75405309 None:intergenic 25.0%
! TTTGATTGTATATGAAAAGG+GGG + chr3.3:75404983-75405002 MS.gene013678:intron 25.0%
! TTTGTAACAAAGAGAAAAAG+AGG - chr3.3:75404260-75404279 None:intergenic 25.0%
!! AGAATATTCTAGAAACGAAA+AGG + chr3.3:75403924-75403943 MS.gene013678:intron 25.0%
!! CATCAAATGATTTAAGATTG+AGG + chr3.3:75406589-75406608 MS.gene013678:intron 25.0%
!! CCTCTTCCTTTATAAATTTT+GGG - chr3.3:75403899-75403918 None:intergenic 25.0%
!! TATTTGGAGTAGTATACAAT+TGG + chr3.3:75403665-75403684 MS.gene013678:intron 25.0%
!!! ATTGGAGTCTTTTTTAATCT+GGG + chr3.3:75405077-75405096 MS.gene013678:intron 25.0%
!!! CTATGAATTTGTTGAATGAA+AGG + chr3.3:75407085-75407104 MS.gene013678:CDS 25.0%
!!! TTTGCTTTTTATGGATCTAA+GGG + chr3.3:75404299-75404318 MS.gene013678:intron 25.0%
!!! TTTTGCTTTTTATGGATCTA+AGG + chr3.3:75404298-75404317 MS.gene013678:intron 25.0%
AAGAAGAAACACAATCCAAA+TGG - chr3.3:75404326-75404345 None:intergenic 30.0%
ACCCTAAGAAAAACAAATCA+AGG - chr3.3:75407007-75407026 None:intergenic 30.0%
AGAAAACAATAAATGTTGCC+TGG + chr3.3:75403586-75403605 MS.gene013678:intron 30.0%
AGAATACAAACTTTGTCAAG+TGG - chr3.3:75405883-75405902 None:intergenic 30.0%
AGCTGCAGATATAAAATGAT+CGG - chr3.3:75404383-75404402 None:intergenic 30.0%
AGGTATATTATAAACAGTGG+CGG + chr3.3:75404536-75404555 MS.gene013678:intron 30.0%
AGTAAACATCAGTATGACAA+AGG - chr3.3:75404504-75404523 None:intergenic 30.0%
ATAGTATTTATAATCAGGGG+CGG - chr3.3:75404908-75404927 None:intergenic 30.0%
ATGTACTTCTCTACAACATT+AGG - chr3.3:75407159-75407178 None:intergenic 30.0%
CAGTCAAGATTCACTATTAA+GGG + chr3.3:75405766-75405785 MS.gene013678:CDS 30.0%
CCATGAATGCAAATTGAATT+AGG - chr3.3:75406296-75406315 None:intergenic 30.0%
CCCAAAATTTATAAAGGAAG+AGG + chr3.3:75403896-75403915 MS.gene013678:intron 30.0%
CCTAATTCAATTTGCATTCA+TGG + chr3.3:75406293-75406312 MS.gene013678:intron 30.0%
GCATTGTACCTAATTCAAAT+CGG - chr3.3:75406558-75406577 None:intergenic 30.0%
GCGTAAGTACTTAAATGATA+AGG + chr3.3:75406167-75406186 MS.gene013678:intron 30.0%
GTAAACATCAGTATGACAAA+GGG - chr3.3:75404503-75404522 None:intergenic 30.0%
GTAATTGCTGAAATGACAAA+TGG + chr3.3:75406839-75406858 MS.gene013678:CDS 30.0%
TATTCTTTCCTTCTGTTTCA+GGG + chr3.3:75405146-75405165 MS.gene013678:intron 30.0%
TCAGTCAAGATTCACTATTA+AGG + chr3.3:75405765-75405784 MS.gene013678:CDS 30.0%
TCATACTGATGTTTACTTCT+GGG + chr3.3:75404507-75404526 MS.gene013678:CDS 30.0%
TCGGTCTTTATATCAGTAAA+TGG - chr3.3:75404782-75404801 None:intergenic 30.0%
TTATTCTTTCCTTCTGTTTC+AGG + chr3.3:75405145-75405164 MS.gene013678:intron 30.0%
TTGAATGAAAGGACTCTTAA+GGG + chr3.3:75407096-75407115 MS.gene013678:CDS 30.0%
TTGAATGCATCATCTTTGTT+TGG - chr3.3:75407057-75407076 None:intergenic 30.0%
! CCCTCTTCCTTTATAAATTT+TGG - chr3.3:75403900-75403919 None:intergenic 30.0%
! CGGATCTTGAGTAAATTTTT+CGG + chr3.3:75404556-75404575 MS.gene013678:intron 30.0%
! GATCTTGAGTAAATTTTTCG+GGG + chr3.3:75404558-75404577 MS.gene013678:intron 30.0%
! GGATCTTGAGTAAATTTTTC+GGG + chr3.3:75404557-75404576 MS.gene013678:intron 30.0%
! TTGTAGAGAAGTACATGAAA+GGG + chr3.3:75407163-75407182 MS.gene013678:CDS 30.0%
!! AATGTTGTAAACTGGTTTGA+TGG + chr3.3:75404629-75404648 MS.gene013678:intron 30.0%
!! ATCTTGAGTAAATTTTTCGG+GGG + chr3.3:75404559-75404578 MS.gene013678:intron 30.0%
!! ATTTGTTTTTCTTAGGGTTG+GGG + chr3.3:75407009-75407028 MS.gene013678:intron 30.0%
!! GATTTGTTTTTCTTAGGGTT+GGG + chr3.3:75407008-75407027 MS.gene013678:intron 30.0%
!! TGTTGATAATTTGATACTGC+AGG + chr3.3:75407275-75407294 MS.gene013678:intron 30.0%
!!! AGCCTTGATTTGTTTTTCTT+AGG + chr3.3:75407002-75407021 MS.gene013678:intron 30.0%
!!! ATTTTGTTTTGCATACATCG+TGG - chr3.3:75406931-75406950 None:intergenic 30.0%
!!! GATTGGAGTCTTTTTTAATC+TGG + chr3.3:75405076-75405095 MS.gene013678:intron 30.0%
!!! GCCTTGATTTGTTTTTCTTA+GGG + chr3.3:75407003-75407022 MS.gene013678:intron 30.0%
!!! TGATTTGTTTTTCTTAGGGT+TGG + chr3.3:75407007-75407026 MS.gene013678:intron 30.0%
AAACCAGGTGGTATAATTTG+TGG + chr3.3:75403948-75403967 MS.gene013678:intron 35.0%
AAAGATAGCAACAGATGAAC+CGG - chr3.3:75406361-75406380 None:intergenic 35.0%
AAAGTTTGTATTCTCAGCTG+TGG + chr3.3:75405889-75405908 MS.gene013678:CDS 35.0%
AAGGAAATTAAGCTGGTGAT+TGG + chr3.3:75405059-75405078 MS.gene013678:intron 35.0%
AAGTGCATAACTTTGACATG+AGG + chr3.3:75404655-75404674 MS.gene013678:intron 35.0%
ACAAAGAGAAAAAGAGGACA+TGG - chr3.3:75404254-75404273 None:intergenic 35.0%
ATTGCTGAAATGACAAATGG+AGG + chr3.3:75406842-75406861 MS.gene013678:CDS 35.0%
CAATTTGCATTCATGGTTGT+AGG + chr3.3:75406300-75406319 MS.gene013678:intron 35.0%
CCAAAAATACGAGGAAACAA+TGG - chr3.3:75405179-75405198 None:intergenic 35.0%
GAATATACTGTTGTTCATGC+TGG + chr3.3:75405829-75405848 MS.gene013678:CDS 35.0%
GGAAATCATATACTCAACCT+AGG - chr3.3:75406275-75406294 None:intergenic 35.0%
GGGTTTGTAGTTACCATAAA+AGG - chr3.3:75407124-75407143 None:intergenic 35.0%
GGTATGATCACTGGATTTAT+TGG + chr3.3:75403372-75403391 MS.gene013678:intron 35.0%
GTCATACTGATGTTTACTTC+TGG + chr3.3:75404506-75404525 MS.gene013678:CDS 35.0%
GTTGAATGAAAGGACTCTTA+AGG + chr3.3:75407095-75407114 MS.gene013678:CDS 35.0%
TAGAAACGAAAAGGAAAACC+AGG + chr3.3:75403933-75403952 MS.gene013678:intron 35.0%
TGATCTTCTTAGGATCAACA+CGG + chr3.3:75405717-75405736 MS.gene013678:CDS 35.0%
TGTTGAACTAACCTGTTGTA+CGG - chr3.3:75406713-75406732 None:intergenic 35.0%
TTAACTATGTCGAACACTGT+TGG + chr3.3:75404205-75404224 MS.gene013678:intron 35.0%
! AAATGCAAAGGTATGATCAC+TGG + chr3.3:75403363-75403382 MS.gene013678:intron 35.0%
! ATGATTATGAGTGAGTTGAG+TGG - chr3.3:75404175-75404194 None:intergenic 35.0%
! CCATTGTTTCCTCGTATTTT+TGG + chr3.3:75405176-75405195 MS.gene013678:CDS 35.0%
! GTTGTAGAGAAGTACATGAA+AGG + chr3.3:75407162-75407181 MS.gene013678:CDS 35.0%
! TCATTTTATATCTGCAGCTG+CGG + chr3.3:75404384-75404403 MS.gene013678:intron 35.0%
! TGATTATGAGTGAGTTGAGT+GGG - chr3.3:75404174-75404193 None:intergenic 35.0%
! TGTAGAGAAGTACATGAAAG+GGG + chr3.3:75407164-75407183 MS.gene013678:CDS 35.0%
!! AATATAAAAAGAGGGTGCCA+TGG + chr3.3:75404741-75404760 MS.gene013678:intron 35.0%
!! ATATAAAAAGAGGGTGCCAT+GGG + chr3.3:75404742-75404761 MS.gene013678:intron 35.0%
!! GCTGTCACTTTAAAATAACC+AGG - chr3.3:75403607-75403626 None:intergenic 35.0%
!! GCTTTTGATTACATGCTGAA+AGG + chr3.3:75407354-75407373 MS.gene013678:CDS 35.0%
!! GTTTCTAGCCGATTTGAATT+AGG + chr3.3:75406547-75406566 MS.gene013678:CDS 35.0%
!!! ACTCTTAAGGGTACCTTTTA+TGG + chr3.3:75407108-75407127 MS.gene013678:CDS 35.0%
AAACGAAAAGGAAAACCAGG+TGG + chr3.3:75403936-75403955 MS.gene013678:intron 40.0%
AACACAAACACACACACTCA+TGG - chr3.3:75406424-75406443 None:intergenic 40.0%
AACATCAGTATGACAAAGGG+AGG - chr3.3:75404500-75404519 None:intergenic 40.0%
AACATTAGGAAGATCAGTGC+GGG - chr3.3:75407145-75407164 None:intergenic 40.0%
AAGATAGCAACAGATGAACC+GGG - chr3.3:75406360-75406379 None:intergenic 40.0%
AAGCCACAAATTATACCACC+TGG - chr3.3:75403954-75403973 None:intergenic 40.0%
ACATTCGAAAGCTGAGATCA+TGG - chr3.3:75406906-75406925 None:intergenic 40.0%
ATGGCACACTTAATCTGAGA+CGG - chr3.3:75403462-75403481 None:intergenic 40.0%
ATGTTCCTTAAAGAATGCCC+CGG - chr3.3:75403749-75403768 None:intergenic 40.0%
ATGTTGGCATGATGTTGATC+AGG + chr3.3:75405575-75405594 MS.gene013678:intron 40.0%
CAACATTAGGAAGATCAGTG+CGG - chr3.3:75407146-75407165 None:intergenic 40.0%
CATGATGTTGATCAGGATTG+TGG + chr3.3:75405582-75405601 MS.gene013678:intron 40.0%
GCAACATGTGTGATCTTCTT+AGG + chr3.3:75405707-75405726 MS.gene013678:CDS 40.0%
GCTTCATGACCAAAAATACG+AGG - chr3.3:75405188-75405207 None:intergenic 40.0%
GGTCAAGTCATCAAATGCAA+AGG + chr3.3:75403351-75403370 MS.gene013678:CDS 40.0%
GGTTCATCTGTTGCTATCTT+TGG + chr3.3:75406360-75406379 MS.gene013678:CDS 40.0%
GTGGTAAAGTCAAATCCCAA+AGG + chr3.3:75403975-75403994 MS.gene013678:intron 40.0%
GTTGAACTAACCTGTTGTAC+GGG - chr3.3:75406712-75406731 None:intergenic 40.0%
TAACTTTGACATGAGGTACG+CGG + chr3.3:75404662-75404681 MS.gene013678:intron 40.0%
TAATTTGATACTGCAGGAGC+TGG + chr3.3:75407281-75407300 MS.gene013678:intron 40.0%
TACAAATTTCAGGCTGCTGA+AGG + chr3.3:75406481-75406500 MS.gene013678:intron 40.0%
TATGGATCTAAGGGTCCATT+TGG + chr3.3:75404308-75404327 MS.gene013678:intron 40.0%
TCTGGTGCATCAAGAATCAT+TGG + chr3.3:75406514-75406533 MS.gene013678:CDS 40.0%
TCTGTTGCTATCTTTGGACT+TGG + chr3.3:75406366-75406385 MS.gene013678:CDS 40.0%
TCTTGTTAACGAGTGTCTTC+GGG - chr3.3:75403876-75403895 None:intergenic 40.0%
TGAAATGACAAATGGAGGTG+TGG + chr3.3:75406847-75406866 MS.gene013678:CDS 40.0%
TGGTCTCAGCTAAGAAGTTT+GGG + chr3.3:75406650-75406669 MS.gene013678:intron 40.0%
TTGGTCTCAGCTAAGAAGTT+TGG + chr3.3:75406649-75406668 MS.gene013678:intron 40.0%
TTTCGGCTTAGCAACATTGA+TGG - chr3.3:75406337-75406356 None:intergenic 40.0%
! ACGGGTTTGTCATGATCTTT+TGG - chr3.3:75406694-75406713 None:intergenic 40.0%
! AGGTGGTATAATTTGTGGCT+TGG + chr3.3:75403953-75403972 MS.gene013678:intron 40.0%
! ATCGTGCTGTTGAATGTACT+GGG + chr3.3:75406870-75406889 MS.gene013678:CDS 40.0%
! CGGGTTTGTCATGATCTTTT+GGG - chr3.3:75406693-75406712 None:intergenic 40.0%
! GATTATGAGTGAGTTGAGTG+GGG - chr3.3:75404173-75404192 None:intergenic 40.0%
! GTCTTGTTAACGAGTGTCTT+CGG - chr3.3:75403877-75403896 None:intergenic 40.0%
! GTGTGACACATCTAAAACCA+GGG + chr3.3:75405620-75405639 MS.gene013678:CDS 40.0%
! TGGTATAATTTGTGGCTTGG+TGG + chr3.3:75403956-75403975 MS.gene013678:intron 40.0%
! TGTGACACATCTAAAACCAG+GGG + chr3.3:75405621-75405640 MS.gene013678:CDS 40.0%
! TGTTTACTTCTGGGAAGCTA+AGG + chr3.3:75404516-75404535 MS.gene013678:CDS 40.0%
!! AGGTGAAGAGTATCTTGAGA+CGG - chr3.3:75404480-75404499 None:intergenic 40.0%
!! TATAAAAAGAGGGTGCCATG+GGG + chr3.3:75404743-75404762 MS.gene013678:intron 40.0%
!! TTTTGAGGGGTTCCTTGTAA+AGG + chr3.3:75405275-75405294 MS.gene013678:intron 40.0%
!! TTTTTGGTCATGAAGCTGGA+GGG + chr3.3:75405192-75405211 MS.gene013678:CDS 40.0%
!!! ATTTTTGGTCATGAAGCTGG+AGG + chr3.3:75405191-75405210 MS.gene013678:CDS 40.0%
!!! CGTATTTTTGGTCATGAAGC+TGG + chr3.3:75405188-75405207 MS.gene013678:CDS 40.0%
!!! GCTGTGTCATTTTGTGTGTA+AGG + chr3.3:75406817-75406836 MS.gene013678:intron 40.0%
AAATGTTAACGAGTGTCCCC+GGG + chr3.3:75403728-75403747 MS.gene013678:intron 45.0%
AACTTTGACATGAGGTACGC+GGG + chr3.3:75404663-75404682 MS.gene013678:intron 45.0%
AATGTTGCTAAGCCGAAACC+CGG + chr3.3:75406339-75406358 MS.gene013678:CDS 45.0%
ACATTAGGAAGATCAGTGCG+GGG - chr3.3:75407144-75407163 None:intergenic 45.0%
ACCCAAAAAAAGGACCCAGT+GGG - chr3.3:75404697-75404716 None:intergenic 45.0%
ACTTTGTCAAGTGGTGCATC+AGG - chr3.3:75405874-75405893 None:intergenic 45.0%
ATCTTTGGACTTGGAGCTGT+TGG + chr3.3:75406375-75406394 MS.gene013678:CDS 45.0%
CAGCCCATTCATCATTTCGT+CGG + chr3.3:75405790-75405809 MS.gene013678:CDS 45.0%
CATCAGATGCATCATCCGAA+TGG + chr3.3:75407383-75407402 MS.gene013678:CDS 45.0%
CATTCGGATGATGCATCTGA+TGG - chr3.3:75407385-75407404 None:intergenic 45.0%
CTCTCCTCTGACTTACAATG+TGG - chr3.3:75405688-75405707 None:intergenic 45.0%
CTGTCCACATTGTAAGTCAG+AGG + chr3.3:75405681-75405700 MS.gene013678:CDS 45.0%
CTTTGTCAAGTGGTGCATCA+GGG - chr3.3:75405873-75405892 None:intergenic 45.0%
GAAATGTTAACGAGTGTCCC+CGG + chr3.3:75403727-75403746 MS.gene013678:intron 45.0%
GAATATGCACAGGTATGAGC+TGG + chr3.3:75405911-75405930 MS.gene013678:intron 45.0%
GAGTTTGACCCTGAAACAGA+AGG - chr3.3:75405157-75405176 None:intergenic 45.0%
GCATTCATGGTTGTAGGTCT+TGG + chr3.3:75406306-75406325 MS.gene013678:intron 45.0%
GGTCTCAGCTAAGAAGTTTG+GGG + chr3.3:75406651-75406670 MS.gene013678:intron 45.0%
TAAAGACCGAATAACCGCTG+CGG + chr3.3:75404792-75404811 MS.gene013678:intron 45.0%
TACCCAAAAAAAGGACCCAG+TGG - chr3.3:75404698-75404717 None:intergenic 45.0%
TATGTCGAACACTGTTGGTC+AGG + chr3.3:75404210-75404229 MS.gene013678:intron 45.0%
TCATGACAAACCCGTACAAC+AGG + chr3.3:75406699-75406718 MS.gene013678:CDS 45.0%
TCTTAGGATCAACACGGACA+GGG + chr3.3:75405723-75405742 MS.gene013678:CDS 45.0%
TGAAGGTCACTGACAGTAGT+TGG + chr3.3:75404145-75404164 MS.gene013678:intron 45.0%
TGTTCCTTAAAGAATGCCCC+GGG - chr3.3:75403748-75403767 None:intergenic 45.0%
TTCTTAGGATCAACACGGAC+AGG + chr3.3:75405722-75405741 MS.gene013678:CDS 45.0%
! ATTTTACCAGCTGCGCCTTT+GGG - chr3.3:75403993-75404012 None:intergenic 45.0%
! GATCGTGCTGTTGAATGTAC+TGG + chr3.3:75406869-75406888 MS.gene013678:CDS 45.0%
! GGTGTGACACATCTAAAACC+AGG + chr3.3:75405619-75405638 MS.gene013678:CDS 45.0%
! GTGCCGACGAAATGATGAAT+GGG - chr3.3:75405796-75405815 None:intergenic 45.0%
! TATCTTGAGACGGACTTCAC+CGG - chr3.3:75404470-75404489 None:intergenic 45.0%
! TGTGCCGACGAAATGATGAA+TGG - chr3.3:75405797-75405816 None:intergenic 45.0%
!! ATATATATTCTATAAATATT+TGG - chr3.3:75404587-75404606 None:intergenic 5.0%
!!! TTTATTTTTATATTTCATTA+TGG + chr3.3:75406133-75406152 MS.gene013678:intron 5.0%
AATGTTAACGAGTGTCCCCG+GGG + chr3.3:75403729-75403748 MS.gene013678:intron 50.0%
ATGCCCTGCCTGTATTCACA+GGG + chr3.3:75405647-75405666 MS.gene013678:CDS 50.0%
CAGATGCATCATCCGAATGG+AGG + chr3.3:75407386-75407405 MS.gene013678:CDS 50.0%
CCCAAAAAAAGGACCCAGTG+GGG - chr3.3:75404696-75404715 None:intergenic 50.0%
CTCAGCTGTGGAATATGCAC+AGG + chr3.3:75405901-75405920 MS.gene013678:CDS 50.0%
CTTAGGATCAACACGGACAG+GGG + chr3.3:75405724-75405743 MS.gene013678:CDS 50.0%
GCAACAGATGAACCGGGTTT+CGG - chr3.3:75406354-75406373 None:intergenic 50.0%
GCTGAAGGAGCAAGGATATC+TGG + chr3.3:75406496-75406515 MS.gene013678:CDS 50.0%
GTTCCTTAAAGAATGCCCCG+GGG - chr3.3:75403747-75403766 None:intergenic 50.0%
TGCACAGGTATGAGCTGGTT+TGG + chr3.3:75405916-75405935 MS.gene013678:intron 50.0%
! ATAAAGTTTGGGGGGTGCAG+TGG + chr3.3:75404859-75404878 MS.gene013678:intron 50.0%
! ATCAGGATTGTGGAGAGCGT+AGG + chr3.3:75405592-75405611 MS.gene013678:intron 50.0%
! CAAAGGCGCAGCTGGTAAAA+TGG + chr3.3:75403992-75404011 MS.gene013678:intron 50.0%
! CATTTTACCAGCTGCGCCTT+TGG - chr3.3:75403994-75404013 None:intergenic 50.0%
! CTGTATTCACAGGGGAGTGT+GGG + chr3.3:75405656-75405675 MS.gene013678:CDS 50.0%
! GCACAGGTATGAGCTGGTTT+GGG + chr3.3:75405917-75405936 MS.gene013678:intron 50.0%
! TGTATTCACAGGGGAGTGTG+GGG + chr3.3:75405657-75405676 MS.gene013678:CDS 50.0%
!! TGAATGTACTGGGAGCATCC+AGG + chr3.3:75406880-75406899 MS.gene013678:CDS 50.0%
!! TGGGGTGTTGCTGTACTTGT+TGG + chr3.3:75407027-75407046 MS.gene013678:CDS 50.0%
!!! CCCCACTGGGTCCTTTTTTT+GGG + chr3.3:75404693-75404712 MS.gene013678:intron 50.0%
!!! TCCCCACTGGGTCCTTTTTT+TGG + chr3.3:75404692-75404711 MS.gene013678:intron 50.0%
ACTCCCCTGTGAATACAGGC+AGG - chr3.3:75405654-75405673 None:intergenic 55.0%
ATCTGCAGCTGCGGTTGCAT+GGG + chr3.3:75404393-75404412 MS.gene013678:intron 55.0%
CATGCCCTGCCTGTATTCAC+AGG + chr3.3:75405646-75405665 MS.gene013678:CDS 55.0%
CCACACTCCCCTGTGAATAC+AGG - chr3.3:75405658-75405677 None:intergenic 55.0%
CCTGTATTCACAGGGGAGTG+TGG + chr3.3:75405655-75405674 MS.gene013678:CDS 55.0%
CGAAAGCTGAGATCATGGCC+TGG - chr3.3:75406901-75406920 None:intergenic 55.0%
CTCCCCTGTGAATACAGGCA+GGG - chr3.3:75405653-75405672 None:intergenic 55.0%
GGTCAGGTCATCAAGTGCAG+AGG + chr3.3:75404226-75404245 MS.gene013678:intron 55.0%
TATCTGCAGCTGCGGTTGCA+TGG + chr3.3:75404392-75404411 MS.gene013678:intron 55.0%
TCCACTTCCTCCATCACCAG+CGG - chr3.3:75404430-75404449 None:intergenic 55.0%
TGCCCTGCCTGTATTCACAG+GGG + chr3.3:75405648-75405667 MS.gene013678:CDS 55.0%
TTCAGGCTGCTGAAGGAGCA+AGG + chr3.3:75406488-75406507 MS.gene013678:intron 55.0%
! ATTGTGGAGAGCGTAGGCGA+GGG + chr3.3:75405598-75405617 MS.gene013678:CDS 55.0%
! GGATCTCTTTAGAGACCCCC+AGG - chr3.3:75404887-75404906 None:intergenic 55.0%
! TCAAATCCCAAAGGCGCAGC+TGG + chr3.3:75403984-75404003 MS.gene013678:intron 55.0%
! TGTCCCCGGGGCATTCTTTA+AGG + chr3.3:75403741-75403760 MS.gene013678:intron 55.0%
ACGCGGGTTCAAATCCCCAC+TGG + chr3.3:75404679-75404698 MS.gene013678:intron 60.0%
CGCGGGTTCAAATCCCCACT+GGG + chr3.3:75404680-75404699 MS.gene013678:intron 60.0%
! GATTGTGGAGAGCGTAGGCG+AGG + chr3.3:75405597-75405616 MS.gene013678:CDS 60.0%
!! AGACGGACTTCACCGGCTTG+TGG - chr3.3:75404463-75404482 None:intergenic 60.0%
!! GCTGGTGATGGAGGAAGTGG+AGG + chr3.3:75404429-75404448 MS.gene013678:CDS 60.0%
!! GGTGATGGAGGAAGTGGAGG+TGG + chr3.3:75404432-75404451 MS.gene013678:CDS 60.0%
ACAGGCAGGGCATGATCCCC+TGG - chr3.3:75405640-75405659 None:intergenic 65.0%
AGCTGCGGTTGCATGGGAGG+CGG + chr3.3:75404399-75404418 MS.gene013678:intron 65.0%
GGTCGCGTGTTCGAACCCCA+TGG - chr3.3:75404761-75404780 None:intergenic 65.0%
TGCAGCTGCGGTTGCATGGG+AGG + chr3.3:75404396-75404415 MS.gene013678:intron 65.0%
! CATATGTACCGGCGCCGCAG+CGG - chr3.3:75404809-75404828 None:intergenic 65.0%
!! CGGACTTCACCGGCTTGTGG+TGG - chr3.3:75404460-75404479 None:intergenic 65.0%
!! GCCGCTGGTGATGGAGGAAG+TGG + chr3.3:75404426-75404445 MS.gene013678:CDS 65.0%
CCGAATAACCGCTGCGGCGC+CGG + chr3.3:75404798-75404817 MS.gene013678:intron 70.0%
CCGGCGCCGCAGCGGTTATT+CGG - chr3.3:75404801-75404820 None:intergenic 70.0%
CTGCGGTTGCATGGGAGGCG+GGG + chr3.3:75404401-75404420 MS.gene013678:CDS 70.0%
GAGGTGGCGCCACCACAAGC+CGG + chr3.3:75404448-75404467 MS.gene013678:CDS 70.0%
GCTGCGGTTGCATGGGAGGC+GGG + chr3.3:75404400-75404419 MS.gene013678:intron 70.0%
! TGGGGGGTGCAGTGGCACCT+GGG + chr3.3:75404867-75404886 MS.gene013678:intron 70.0%
! TTGGGGGGTGCAGTGGCACC+TGG + chr3.3:75404866-75404885 MS.gene013678:intron 70.0%
!! GGGGAAGCCGCTGGTGATGG+AGG + chr3.3:75404420-75404439 MS.gene013678:CDS 70.0%
ATGGGAGGCGGGGAAGCCGC+TGG + chr3.3:75404411-75404430 MS.gene013678:CDS 75.0%
GGCGGGGAAGCCGCTGGTGA+TGG + chr3.3:75404417-75404436 MS.gene013678:CDS 75.0%
! GGGGGGTGCAGTGGCACCTG+GGG + chr3.3:75404868-75404887 MS.gene013678:intron 75.0%
! GGGGGTGCAGTGGCACCTGG+GGG + chr3.3:75404869-75404888 MS.gene013678:intron 75.0%


Chromosome Type Strat End Strand Name
chr3.3 gene 75403336 75407413 75403336 ID=MS.gene013678
chr3.3 mRNA 75403336 75407413 75403336 ID=MS.gene013678.t1;Parent=MS.gene013678
chr3.3 exon 75403336 75403372 75403336 ID=MS.gene013678.t1.exon1;Parent=MS.gene013678.t1
chr3.3 CDS 75403336 75403372 75403336 ID=cds.MS.gene013678.t1;Parent=MS.gene013678.t1
chr3.3 exon 75404401 75404537 75404401 ID=MS.gene013678.t1.exon2;Parent=MS.gene013678.t1
chr3.3 CDS 75404401 75404537 75404401 ID=cds.MS.gene013678.t1;Parent=MS.gene013678.t1
chr3.3 exon 75405167 75405213 75405167 ID=MS.gene013678.t1.exon3;Parent=MS.gene013678.t1
chr3.3 CDS 75405167 75405213 75405167 ID=cds.MS.gene013678.t1;Parent=MS.gene013678.t1
chr3.3 exon 75405597 75405922 75405597 ID=MS.gene013678.t1.exon4;Parent=MS.gene013678.t1
chr3.3 CDS 75405597 75405922 75405597 ID=cds.MS.gene013678.t1;Parent=MS.gene013678.t1
chr3.3 exon 75406322 75406404 75406322 ID=MS.gene013678.t1.exon5;Parent=MS.gene013678.t1
chr3.3 CDS 75406322 75406404 75406322 ID=cds.MS.gene013678.t1;Parent=MS.gene013678.t1
chr3.3 exon 75406493 75406568 75406493 ID=MS.gene013678.t1.exon6;Parent=MS.gene013678.t1
chr3.3 CDS 75406493 75406568 75406493 ID=cds.MS.gene013678.t1;Parent=MS.gene013678.t1
chr3.3 exon 75406659 75406720 75406659 ID=MS.gene013678.t1.exon7;Parent=MS.gene013678.t1
chr3.3 CDS 75406659 75406720 75406659 ID=cds.MS.gene013678.t1;Parent=MS.gene013678.t1
chr3.3 exon 75406839 75406934 75406839 ID=MS.gene013678.t1.exon8;Parent=MS.gene013678.t1
chr3.3 CDS 75406839 75406934 75406839 ID=cds.MS.gene013678.t1;Parent=MS.gene013678.t1
chr3.3 exon 75407024 75407185 75407024 ID=MS.gene013678.t1.exon9;Parent=MS.gene013678.t1
chr3.3 CDS 75407024 75407185 75407024 ID=cds.MS.gene013678.t1;Parent=MS.gene013678.t1
chr3.3 exon 75407297 75407413 75407297 ID=MS.gene013678.t1.exon10;Parent=MS.gene013678.t1
chr3.3 CDS 75407297 75407413 75407297 ID=cds.MS.gene013678.t1;Parent=MS.gene013678.t1
Gene Sequence

>MS.gene013678

ATGTCGAGTACAGCTGGTCAAGTCATCAAATGCAAAGGTATGATCACTGGATTTATTGGATCAAATTTCAATTTGTATCTAGAAAATTGTAATTATAATTATATATAGTATACGATACTCGTTCCGTCTCAGATTAAGTGTGCCATTTGATTTAAAGACGATTATTAAGAAAATGATAGTTGAATTGACTTTAATTGTAAAATTAACATCATTTCTAAAATATCTTTATTAAATGTACTATTAGTGCAAAAGAAAACAATAAATGTTGCCTGGTTATTTTAAAGTGACAGCAATTTTAAAACAAAGAAAGAAAATGCAAAAATGACACATATTTGGAGTAGTATACAATTGGTTCAATTAACAGCCAATAAAAACAATCAAAATTTATAGGGAAATGTTAACGAGTGTCCCCGGGGCATTCTTTAAGGAACATAAGTAACAAGTATTTATGAAAATATATGTAATTATTGCATTGGAAATTGAAATATTTGACTTTTTAAAAAGATAATTGCTCATTTTAGTATGCTTAAAGAGTGTCCCGAAGACACTCGTTAACAAGACCCAAAATTTATAAAGGAAGAGGGCATAAGAATATTCTAGAAACGAAAAGGAAAACCAGGTGGTATAATTTGTGGCTTGGTGGTAAAGTCAAATCCCAAAGGCGCAGCTGGTAAAATGGTAAAATATTTCTTGTCCAAAAATTAAGTTGTAAAATGTTTCTTGTCCAAAAATTAAAGTTATAAAATGTGTCTTGTCCAAAAATTAATTACTATGTTTAGAAAATCACTCGGTTTTTTCACTACTATAAATGAAGGTCACTGACAGTAGTTGGTTCCCCACTCAACTCACTCATAATCATCTTTTGTTAATTAACTATGTCGAACACTGTTGGTCAGGTCATCAAGTGCAGAGGTACCATGTCCTCTTTTTCTCTTTGTTACAAACATGTTGTACAAATTGTGTTTTGCTTTTTATGGATCTAAGGGTCCATTTGGATTGTGTTTCTTCTTTATTAAGAATAGTTTTTTTTTTTTGCGTACTATTCCGATCATTTTATATCTGCAGCTGCGGTTGCATGGGAGGCGGGGAAGCCGCTGGTGATGGAGGAAGTGGAGGTGGCGCCACCACAAGCCGGTGAAGTCCGTCTCAAGATACTCTTCACCTCCCTTTGTCATACTGATGTTTACTTCTGGGAAGCTAAGGTATATTATAAACAGTGGCGGATCTTGAGTAAATTTTTCGGGGGTGCCAAATATTTATAGAATATATATTAAAAAGTATCATAAAATATGCAATGTTGTAAACTGGTTTGATGGTAGAAGTGCATAACTTTGACATGAGGTACGCGGGTTCAAATCCCCACTGGGTCCTTTTTTTGGGTATAAAATATGAAGAATTCGTAAAAAATATAAAAAGAGGGTGCCATGGGGTTCGAACACGCGACCATTTACTGATATAAAGACCGAATAACCGCTGCGGCGCCGGTACATATGTTGTTATATTATGCATAATATGATATTTATATAAAGTTTGGGGGGTGCAGTGGCACCTGGGGGTCTCTAAAGAGATCCGCCCCTGATTATAAATACTATACATGCAGTTTTATAAATTTAGACATTAAGCTTCACTCTTATGATTTTAGTTTGATTTGATTGTATATGAAAAGGGGGTGTTTAGTTTCTTTTGCATAACATAAAATTCTTCTGAGTTTAATTTTAGATTAAAGGAAATTAAGCTGGTGATTGGAGTCTTTTTTAATCTGGGTGTTTCAGTGTCATGTTATGCATCGCAATAGCTCAAGTAATTGTTTTATTCTTTCCTTCTGTTTCAGGGTCAAACTCCATTGTTTCCTCGTATTTTTGGTCATGAAGCTGGAGGGTATGTTTCTCTTCTCAATACTAAAAGTTGAACTACATATCTTAAATATTTAATTCTTGTTTTTTGAGGGGTTCCTTGTAAAGGATTCAATTCATATACTTTGCTAATGTAATTTTTTTACAATGTCAATCAATTATAATTGCAAGATCATTAATTTTTTAACTTCTTTGAAAACCACAGATATGATTGATTTATTGTAATTTGTTGACTGCATGAAACTTTTTAGAATCAATCAAAATGAAGCTGATATTTTAATATACACTACTTCATTTTTCTTAATTTACTATATGGTTTTGACAAAGACTGTTTTTTGATGAAATCTTTTGATTATCTAATGTAATATGAATGAATTTTATTCATAATGTTGGCATGATGTTGATCAGGATTGTGGAGAGCGTAGGCGAGGGTGTGACACATCTAAAACCAGGGGATCATGCCCTGCCTGTATTCACAGGGGAGTGTGGGGACTGTCCACATTGTAAGTCAGAGGAGAGCAACATGTGTGATCTTCTTAGGATCAACACGGACAGGGGCGTTATGATCAATGACAATCAGTCAAGATTCACTATTAAGGGACAGCCCATTCATCATTTCGTCGGCACATCGACATTCAGTGAATATACTGTTGTTCATGCTGGATGTGTTGCAAAGATCAACCCTGATGCACCACTTGACAAAGTTTGTATTCTCAGCTGTGGAATATGCACAGGTATGAGCTGGTTTGGGTTGACTTATTTAAGCTTATCTATTGAAATAAGCATATGTTAGACTTTGAGAGAGCTTATGAAAACAACTTATGACATGACCATAAGTTGTTTTAAACTTATGACATGACCATAAGTTGTTTTAAACTTATTTTTATAATCTCTCTAGGATAGTTTATGAAAACAATTTATAGCTTATATATGAAAACGATGACTTTATTTTTATATTTCATTATGGAAATAGCTTATGCGTAAGTACTTAAATGATAAGGGCTTATACTGTAAACTCTTATTAATTAAGCTGTTTATCCAAGTAGTGTATAATATATCCTTGCATTGAGATATTAATATATACCTAGGTTGAGTATATGATTTCCTAATTCAATTTGCATTCATGGTTGTAGGTCTTGGTGCTACCATCAATGTTGCTAAGCCGAAACCCGGTTCATCTGTTGCTATCTTTGGACTTGGAGCTGTTGGCCTTGCTGTATGTTACTTTTATACCATGAGTGTGTGTGTTTGTGTTACTGTTATCATATATAGAAACTAAAAAGATTCAATAATACAAATTTCAGGCTGCTGAAGGAGCAAGGATATCTGGTGCATCAAGAATCATTGGAGTCGATTTAGTTTCTAGCCGATTTGAATTAGGTACAATGCTTTTCTTATTCCATCAAATGATTTAAGATTGAGGTCAACCTAAGTTATATGACTTAATTTTTGAAATATTCTTGGTCTCAGCTAAGAAGTTTGGGGTAAATGAGTTTGTGAACCCAAAAGATCATGACAAACCCGTACAACAGGTTAGTTCAACAAAAAATTAGTGTTTACATTTATATTCTCTCTAAACTTTGTTAATTGAATATTGAAATTCAAATTTGATGCTATGCATTAAACATGCTGTGTCATTTTGTGTGTAAGGTAATTGCTGAAATGACAAATGGAGGTGTGGATCGTGCTGTTGAATGTACTGGGAGCATCCAGGCCATGATCTCAGCTTTCGAATGTGTCCACGATGTATGCAAAACAAAATTCATCTGTTCTTACTTGTTGCGAAAGAAATTATAAAGCTTACTGAGGCTAAAGCCTTGATTTGTTTTTCTTAGGGTTGGGGTGTTGCTGTACTTGTTGGAGTTCCAAACAAAGATGATGCATTCAAAACTCACCCTATGAATTTGTTGAATGAAAGGACTCTTAAGGGTACCTTTTATGGTAACTACAAACCCCGCACTGATCTTCCTAATGTTGTAGAGAAGTACATGAAAGGGGTAAGTTTATTTATATTGAATTGTGCAAACTTTTAGTAGAAGTGAGTGATCACAAATGTAGATTGATATTATTTATGTTGATGCTAATTTGTTGATAATTTGATACTGCAGGAGCTGGAACTTGAGAAATTCATCACTCACTCAATTCCATTTTCAGAGATTAACAAAGCTTTTGATTACATGCTGAAAGGAGAGTCCATCAGATGCATCATCCGAATGGAGGAGTAA
Protein sequence

>MS.gene013678.t1

MSSTAGQVIKCKAAVAWEAGKPLVMEEVEVAPPQAGEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTHLKPGDHALPVFTGECGDCPHCKSEESNMCDLLRINTDRGVMINDNQSRFTIKGQPIHHFVGTSTFSEYTVVHAGCVAKINPDAPLDKVCILSCGICTGLGATINVAKPKPGSSVAIFGLGAVGLAAAEGARISGASRIIGVDLVSSRFELAKKFGVNEFVNPKDHDKPVQQVIAEMTNGGVDRAVECTGSIQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFYGNYKPRTDLPNVVEKYMKGELELEKFITHSIPFSEINKAFDYMLKGESIRCIIRMEE